Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene047686.t1 | XP_003611830.1 | 96.9 | 260 | 8 | 0 | 1 | 260 | 1 | 260 | 1.90E-140 | 508.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene047686.t1 | Q6RYA0 | 49.2 | 258 | 126 | 3 | 4 | 259 | 5 | 259 | 4.8e-60 | 232.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene047686.t1 | G7K9E5 | 96.9 | 260 | 8 | 0 | 1 | 260 | 1 | 260 | 1.4e-140 | 508.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene047686 | MS.gene041151 | PPI |
| MS.gene010412 | MS.gene047686 | PPI |
| MS.gene047686 | MS.gene011884 | PPI |
| MS.gene047686 | MS.gene44962 | PPI |
| MS.gene28543 | MS.gene047686 | PPI |
| MS.gene047689 | MS.gene047686 | PPI |
| MS.gene87350 | MS.gene047686 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene047686.t1 | MTR_5g018320 | 96.923 | 260 | 8 | 0 | 1 | 260 | 1 | 260 | 0.0 | 527 |
| MS.gene047686.t1 | MTR_5g018300 | 87.938 | 257 | 31 | 0 | 4 | 260 | 7 | 263 | 1.40e-173 | 479 |
| MS.gene047686.t1 | MTR_5g018280 | 83.270 | 263 | 40 | 2 | 1 | 260 | 1 | 262 | 7.72e-162 | 449 |
| MS.gene047686.t1 | MTR_8g007675 | 53.906 | 256 | 116 | 2 | 5 | 259 | 32 | 286 | 3.78e-98 | 289 |
| MS.gene047686.t1 | MTR_8g008500 | 53.053 | 262 | 118 | 4 | 2 | 259 | 24 | 284 | 8.75e-93 | 275 |
| MS.gene047686.t1 | MTR_8g008505 | 50.385 | 260 | 126 | 3 | 1 | 259 | 24 | 281 | 1.35e-89 | 267 |
| MS.gene047686.t1 | MTR_3g464040 | 49.231 | 260 | 127 | 3 | 1 | 259 | 15 | 270 | 6.06e-88 | 262 |
| MS.gene047686.t1 | MTR_8g008660 | 49.035 | 259 | 127 | 3 | 2 | 259 | 24 | 278 | 1.00e-87 | 262 |
| MS.gene047686.t1 | MTR_8g007670 | 46.124 | 258 | 136 | 3 | 4 | 259 | 6 | 262 | 1.14e-79 | 241 |
| MS.gene047686.t1 | MTR_8g079120 | 46.124 | 258 | 130 | 4 | 4 | 259 | 10 | 260 | 7.75e-75 | 228 |
| MS.gene047686.t1 | MTR_8g007670 | 40.698 | 258 | 106 | 3 | 4 | 259 | 6 | 218 | 9.86e-65 | 201 |
| MS.gene047686.t1 | MTR_5g018350 | 40.698 | 258 | 142 | 4 | 5 | 259 | 7 | 256 | 2.58e-62 | 196 |
| MS.gene047686.t1 | MTR_5g018365 | 41.860 | 258 | 141 | 3 | 4 | 259 | 11 | 261 | 1.71e-60 | 192 |
| MS.gene047686.t1 | MTR_7g015220 | 39.844 | 256 | 150 | 2 | 1 | 256 | 120 | 371 | 1.10e-54 | 181 |
| MS.gene047686.t1 | MTR_8g079120 | 48.780 | 164 | 77 | 3 | 4 | 165 | 52 | 210 | 3.92e-51 | 166 |
| MS.gene047686.t1 | MTR_3g005410 | 35.115 | 262 | 155 | 4 | 1 | 256 | 90 | 342 | 1.23e-46 | 159 |
| MS.gene047686.t1 | MTR_5g068100 | 37.209 | 258 | 154 | 3 | 4 | 259 | 29 | 280 | 1.28e-44 | 152 |
| MS.gene047686.t1 | MTR_3g093730 | 36.328 | 256 | 158 | 2 | 1 | 256 | 32 | 282 | 2.67e-42 | 146 |
| MS.gene047686.t1 | MTR_3g093730 | 32.692 | 260 | 117 | 5 | 1 | 256 | 32 | 237 | 5.71e-34 | 123 |
| MS.gene047686.t1 | MTR_5g008130 | 39.241 | 79 | 47 | 1 | 182 | 259 | 2 | 80 | 8.24e-14 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene047686.t1 | AT2G23610 | 44.444 | 261 | 134 | 5 | 4 | 259 | 8 | 262 | 1.15e-73 | 226 |
| MS.gene047686.t1 | AT3G50440 | 43.359 | 256 | 140 | 3 | 6 | 259 | 22 | 274 | 1.91e-73 | 226 |
| MS.gene047686.t1 | AT2G23560 | 45.627 | 263 | 130 | 6 | 2 | 259 | 5 | 259 | 3.93e-71 | 219 |
| MS.gene047686.t1 | AT2G23620 | 41.634 | 257 | 147 | 2 | 4 | 259 | 8 | 262 | 1.12e-69 | 216 |
| MS.gene047686.t1 | AT2G23580 | 44.106 | 263 | 137 | 6 | 2 | 259 | 5 | 262 | 2.38e-67 | 209 |
| MS.gene047686.t1 | AT2G23600 | 40.467 | 257 | 150 | 2 | 4 | 259 | 8 | 262 | 3.43e-66 | 206 |
| MS.gene047686.t1 | AT2G23600 | 40.467 | 257 | 150 | 2 | 4 | 259 | 23 | 277 | 5.71e-66 | 206 |
| MS.gene047686.t1 | AT4G37150 | 41.985 | 262 | 138 | 6 | 4 | 259 | 2 | 255 | 7.20e-66 | 206 |
| MS.gene047686.t1 | AT2G23550 | 42.586 | 263 | 141 | 6 | 2 | 259 | 5 | 262 | 2.69e-62 | 197 |
| MS.gene047686.t1 | AT2G23550 | 42.586 | 263 | 141 | 6 | 2 | 259 | 12 | 269 | 2.84e-62 | 197 |
| MS.gene047686.t1 | AT2G23610 | 39.689 | 257 | 107 | 5 | 4 | 259 | 8 | 217 | 3.61e-59 | 187 |
| MS.gene047686.t1 | AT5G10300 | 40.698 | 258 | 144 | 3 | 5 | 259 | 6 | 257 | 9.75e-59 | 187 |
| MS.gene047686.t1 | AT2G23590 | 36.680 | 259 | 154 | 2 | 1 | 259 | 23 | 271 | 4.84e-58 | 186 |
| MS.gene047686.t1 | AT3G29770 | 39.062 | 256 | 152 | 2 | 1 | 256 | 134 | 385 | 2.72e-51 | 172 |
| MS.gene047686.t1 | AT1G26360 | 37.255 | 255 | 156 | 2 | 2 | 256 | 186 | 436 | 5.68e-50 | 170 |
| MS.gene047686.t1 | AT5G58310 | 34.091 | 264 | 164 | 3 | 1 | 258 | 1 | 260 | 1.09e-49 | 164 |
| MS.gene047686.t1 | AT2G23550 | 37.786 | 262 | 126 | 6 | 2 | 259 | 5 | 233 | 4.93e-48 | 159 |
| MS.gene047686.t1 | AT1G33990 | 35.019 | 257 | 156 | 3 | 4 | 256 | 96 | 345 | 1.00e-45 | 156 |
| MS.gene047686.t1 | AT4G09900 | 34.615 | 260 | 159 | 3 | 1 | 256 | 94 | 346 | 1.03e-45 | 156 |
| MS.gene047686.t1 | AT1G69240 | 35.385 | 260 | 156 | 5 | 2 | 256 | 184 | 436 | 1.06e-45 | 159 |
| MS.gene047686.t1 | AT4G16690 | 35.938 | 256 | 142 | 4 | 5 | 252 | 12 | 253 | 7.68e-44 | 149 |
| MS.gene047686.t1 | AT2G23600 | 42.331 | 163 | 93 | 1 | 4 | 165 | 23 | 185 | 2.81e-43 | 145 |
| MS.gene047686.t1 | AT3G10870 | 35.573 | 253 | 160 | 3 | 5 | 256 | 20 | 270 | 8.74e-43 | 147 |
| MS.gene047686.t1 | AT2G23580 | 43.976 | 166 | 85 | 4 | 2 | 162 | 5 | 167 | 2.79e-40 | 138 |
| MS.gene047686.t1 | AT5G10300 | 44.025 | 159 | 82 | 2 | 5 | 160 | 6 | 160 | 1.25e-39 | 136 |
| MS.gene047686.t1 | AT4G37140 | 51.429 | 105 | 51 | 0 | 4 | 108 | 2 | 106 | 1.95e-39 | 134 |
| MS.gene047686.t1 | AT2G23550 | 43.353 | 173 | 89 | 5 | 2 | 169 | 12 | 180 | 9.92e-38 | 132 |
| MS.gene047686.t1 | AT2G23570 | 43.169 | 183 | 95 | 5 | 81 | 259 | 1 | 178 | 1.43e-35 | 125 |
| MS.gene047686.t1 | AT4G37140 | 50.549 | 91 | 45 | 0 | 4 | 94 | 2 | 92 | 2.42e-32 | 114 |
| MS.gene047686.t1 | AT3G29770 | 44.156 | 77 | 43 | 0 | 1 | 77 | 134 | 210 | 5.23e-18 | 81.6 |
Find 58 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAAATGGTTCCATGTTATT+TGG | 0.107480 | 5.3:-10370359 | MS.gene047686:CDS |
| CCCTTGCAATGTCTTTAATA+AGG | 0.211857 | 5.3:-10370190 | MS.gene047686:CDS |
| GAACCATTTGGTTTATCATT+TGG | 0.243454 | 5.3:+10370371 | None:intergenic |
| AACCATTTGGTTTATCATTT+GGG | 0.271934 | 5.3:+10370372 | None:intergenic |
| TTTGCTGATCAAGAACTATT+AGG | 0.294996 | 5.3:-10370155 | MS.gene047686:CDS |
| ACCCTAGACATGGCTGCTTC+TGG | 0.309439 | 5.3:-10372506 | MS.gene047686:CDS |
| CCAAATAACATGGAACCATT+TGG | 0.347623 | 5.3:+10370359 | None:intergenic |
| AGACATTTCGTGTTGGTTCA+TGG | 0.351633 | 5.3:-10372599 | MS.gene047686:CDS |
| TCCAGCTCATGCACTTGCTT+TGG | 0.361365 | 5.3:+10372476 | None:intergenic |
| CGTGTCCAGCAGATTTCAAC+AGG | 0.368596 | 5.3:+10372537 | None:intergenic |
| ATTGCAGTATCAACAAAGAT+TGG | 0.372297 | 5.3:-10370432 | MS.gene047686:intron |
| CTCTTTCGGTTTGGAGAACA+TGG | 0.400553 | 5.3:+10369974 | None:intergenic |
| GCTCATGCACTTGCTTTGGA+TGG | 0.400690 | 5.3:+10372480 | None:intergenic |
| GCGTATCTTCAAGAAATTGC+GGG | 0.452472 | 5.3:-10369945 | MS.gene047686:CDS |
| CTTGCCATGGGGCATGGTGT+TGG | 0.457852 | 5.3:-10372574 | MS.gene047686:CDS |
| TTGGTTCATGGAGCTTGCCA+TGG | 0.459523 | 5.3:-10372587 | MS.gene047686:CDS |
| AGAGTCAAGAAGCTTAGATC+AGG | 0.464438 | 5.3:+10372281 | None:intergenic |
| AGTGTCACACAAAACAACTA+TGG | 0.473238 | 5.3:-10370122 | MS.gene047686:CDS |
| CATAATCTTTGTGTCCAAGC+TGG | 0.478530 | 5.3:+10370406 | None:intergenic |
| TGGTTCATGGAGCTTGCCAT+GGG | 0.483424 | 5.3:-10372586 | MS.gene047686:CDS |
| ATTGCCCTGTTGAAATCTGC+TGG | 0.484179 | 5.3:-10372542 | MS.gene047686:CDS |
| ATCACTTTGACATCATTAGC+AGG | 0.486986 | 5.3:+10370017 | None:intergenic |
| TGATCAGCAAAGCTACGAAC+AGG | 0.487222 | 5.3:+10370167 | None:intergenic |
| AGCCCAAATGATAAACCAAA+TGG | 0.499816 | 5.3:-10370374 | MS.gene047686:CDS |
| ATGGAGCTTGCCATGGGGCA+TGG | 0.500266 | 5.3:-10372580 | MS.gene047686:CDS |
| TTCCAGAAGCAGCCATGTCT+AGG | 0.502599 | 5.3:+10372504 | None:intergenic |
| GCCTTATTAAAGACATTGCA+AGG | 0.509202 | 5.3:+10370189 | None:intergenic |
| AGGATAACTCTTTGCTCTTG+TGG | 0.521619 | 5.3:+10372404 | None:intergenic |
| ACAAAGATTGGATTCCAGCT+TGG | 0.525705 | 5.3:-10370420 | MS.gene047686:CDS |
| ATCCTAGTGGGTCATAGCTT+AGG | 0.529106 | 5.3:-10372386 | MS.gene047686:CDS |
| TCCAAAGCAAGTGCATGAGC+TGG | 0.530609 | 5.3:-10372477 | MS.gene047686:CDS |
| AACTTGGTTGCTAAGAATTG+TGG | 0.545480 | 5.3:+10370335 | None:intergenic |
| TTTGTTAGGAAATAATTCCA+TGG | 0.552369 | 5.3:+10372343 | None:intergenic |
| GATCTTAGAAATTCAATCAA+CGG | 0.558595 | 5.3:+10372431 | None:intergenic |
| TGAAGACAGTTGATACAACT+TGG | 0.563983 | 5.3:+10370319 | None:intergenic |
| CTAGTGGGTCATAGCTTAGG+TGG | 0.571744 | 5.3:-10372383 | MS.gene047686:CDS |
| GATGTGTATATCTGTGGCCA+TGG | 0.581135 | 5.3:-10372360 | MS.gene047686:CDS |
| TCCAGAAGCAGCCATGTCTA+GGG | 0.584704 | 5.3:+10372505 | None:intergenic |
| TGCGTATCTTCAAGAAATTG+CGG | 0.593654 | 5.3:-10369946 | MS.gene047686:CDS |
| GAGCAAAGAGTTATCCTAGT+GGG | 0.595319 | 5.3:-10372398 | MS.gene047686:CDS |
| TCACTTTGACATCATTAGCA+GGG | 0.601541 | 5.3:+10370018 | None:intergenic |
| AAGAAGCTTAGATCAGGAGA+AGG | 0.607709 | 5.3:+10372287 | None:intergenic |
| CGTATCTTCAAGAAATTGCG+GGG | 0.611463 | 5.3:-10369944 | MS.gene047686:CDS |
| CTTCTTGACTCTTCTCCAAG+AGG | 0.614857 | 5.3:-10372270 | MS.gene047686:intron |
| CGAAGTCACAACCCTAGACA+TGG | 0.616290 | 5.3:-10372516 | MS.gene047686:CDS |
| GGATACAAGACATTTCGTGT+TGG | 0.618681 | 5.3:-10372606 | MS.gene047686:CDS |
| AGGTGGGATGTGTATATCTG+TGG | 0.625917 | 5.3:-10372366 | MS.gene047686:CDS |
| GAATTGTGGTCCAAATAACA+TGG | 0.628245 | 5.3:+10370349 | None:intergenic |
| CACCTAAGCTATGACCCACT+AGG | 0.629760 | 5.3:+10372384 | None:intergenic |
| TAGTGGGTCATAGCTTAGGT+GGG | 0.639168 | 5.3:-10372382 | MS.gene047686:CDS |
| GTATCAACTGTCTTCACCTG+AGG | 0.640167 | 5.3:-10370312 | MS.gene047686:intron |
| TGTACCAACACCATGCCCCA+TGG | 0.644751 | 5.3:+10372570 | None:intergenic |
| GATTGTTGATGCTGATCACA+TGG | 0.672431 | 5.3:-10369997 | MS.gene047686:CDS |
| CCTTATTAAAGACATTGCAA+GGG | 0.676815 | 5.3:+10370190 | None:intergenic |
| GGTTCATGGAGCTTGCCATG+GGG | 0.706151 | 5.3:-10372585 | MS.gene047686:CDS |
| GTATCTTCAAGAAATTGCGG+GGG | 0.724507 | 5.3:-10369943 | MS.gene047686:CDS |
| AGAGCAAAGAGTTATCCTAG+TGG | 0.738096 | 5.3:-10372399 | MS.gene047686:CDS |
| GTGTCCAGCAGATTTCAACA+GGG | 0.752122 | 5.3:+10372538 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAGATCATAATTATAAT+AGG | - | chr5.3:10370796-10370815 | MS.gene047686:intron | 10.0% |
| !!! | AAATATTTTTTTATCAAGTT+TGG | - | chr5.3:10371015-10371034 | MS.gene047686:intron | 10.0% |
| !!! | AAATCTATTTTATATGAATA+TGG | + | chr5.3:10371395-10371414 | None:intergenic | 10.0% |
| !!! | AACTTGATAAAAAAATATTT+TGG | + | chr5.3:10371015-10371034 | None:intergenic | 10.0% |
| !!! | ATAGTTTTGATTTTAAAATT+AGG | + | chr5.3:10371969-10371988 | None:intergenic | 10.0% |
| !!! | TAGTTTTGATTTTAAAATTA+GGG | + | chr5.3:10371968-10371987 | None:intergenic | 10.0% |
| !! | CTAAAATACAATAAAGATTA+TGG | - | chr5.3:10370542-10370561 | MS.gene047686:intron | 15.0% |
| !! | TTTAACCCTTATATAATTTA+AGG | + | chr5.3:10371887-10371906 | None:intergenic | 15.0% |
| !!! | AGTTTTGATTTTAAAATTAG+GGG | + | chr5.3:10371967-10371986 | None:intergenic | 15.0% |
| !!! | TGGTTACTTAATTTTTTTAT+AGG | + | chr5.3:10372043-10372062 | None:intergenic | 15.0% |
| !!! | TTTAAAATTAAGATAAAGAG+TGG | - | chr5.3:10371850-10371869 | MS.gene047686:intron | 15.0% |
| !! | AACACTTATTTAATCCTTAA+AGG | - | chr5.3:10371348-10371367 | MS.gene047686:intron | 20.0% |
| !! | AACGAGTAAAAATAAAAAGA+TGG | - | chr5.3:10371069-10371088 | MS.gene047686:intron | 20.0% |
| !! | AATTGATGAAGGAAAAAAAA+TGG | + | chr5.3:10372063-10372082 | None:intergenic | 20.0% |
| !! | ATACAATAAAGATTATGGAT+AGG | - | chr5.3:10370547-10370566 | MS.gene047686:intron | 20.0% |
| !! | ATTGATATAACATACCTTTA+AGG | + | chr5.3:10371365-10371384 | None:intergenic | 20.0% |
| !! | CCTTTCCTTAAATTATATAA+GGG | - | chr5.3:10371879-10371898 | MS.gene047686:intron | 20.0% |
| !! | TAAAAAGATGGTATGTTTAT+AGG | - | chr5.3:10371081-10371100 | MS.gene047686:intron | 20.0% |
| !! | TCAATATGCTTAAATTCTTT+GGG | - | chr5.3:10372271-10372290 | MS.gene047686:CDS | 20.0% |
| !! | TCCTTTCCTTAAATTATATA+AGG | - | chr5.3:10371878-10371897 | MS.gene047686:intron | 20.0% |
| !! | TTCAATATGCTTAAATTCTT+TGG | - | chr5.3:10372270-10372289 | MS.gene047686:intron | 20.0% |
| !!! | AGAAAATCAAATTTTGGAAA+AGG | - | chr5.3:10371999-10372018 | MS.gene047686:intron | 20.0% |
| !!! | AGAAACAGAAAATCAAATTT+TGG | - | chr5.3:10371993-10372012 | MS.gene047686:intron | 20.0% |
| !!! | CATATATCACATTTCTTTTT+TGG | + | chr5.3:10370826-10370845 | None:intergenic | 20.0% |
| !!! | TCTTTATTGTATTTTAGCTA+AGG | + | chr5.3:10370539-10370558 | None:intergenic | 20.0% |
| !!! | TTTCTATTTTTTCATGTGTT+TGG | + | chr5.3:10371921-10371940 | None:intergenic | 20.0% |
| ! | AACCAAAGATTGTATACTTA+CGG | + | chr5.3:10370955-10370974 | None:intergenic | 25.0% |
| ! | AATCGAAATATGATATGTTG+AGG | - | chr5.3:10370659-10370678 | MS.gene047686:intron | 25.0% |
| ! | ACTAATAAACAAATAGGAGT+GGG | - | chr5.3:10371701-10371720 | MS.gene047686:intron | 25.0% |
| ! | ACTATATCATAAACCTCTAT+CGG | + | chr5.3:10370588-10370607 | None:intergenic | 25.0% |
| ! | AGTTTCAAAAATAATCTAGC+TGG | - | chr5.3:10370458-10370477 | MS.gene047686:intron | 25.0% |
| ! | CCCTTATATAATTTAAGGAA+AGG | + | chr5.3:10371882-10371901 | None:intergenic | 25.0% |
| ! | GATCTTAGAAATTCAATCAA+CGG | + | chr5.3:10370112-10370131 | None:intergenic | 25.0% |
| ! | GTTTCAAAAATAATCTAGCT+GGG | - | chr5.3:10370459-10370478 | MS.gene047686:intron | 25.0% |
| ! | TAAATGCTTATATATGAACC+AGG | - | chr5.3:10372321-10372340 | MS.gene047686:CDS | 25.0% |
| ! | TATAGAACAGTAATTGATGA+AGG | + | chr5.3:10372074-10372093 | None:intergenic | 25.0% |
| ! | TCATAGCTATCATCAAATTT+GGG | - | chr5.3:10370329-10370348 | MS.gene047686:CDS | 25.0% |
| ! | TGATGATAGCTATGAAATAT+GGG | + | chr5.3:10370324-10370343 | None:intergenic | 25.0% |
| ! | TTCATAGCTATCATCAAATT+TGG | - | chr5.3:10370328-10370347 | MS.gene047686:CDS | 25.0% |
| ! | TTTGTTAGGAAATAATTCCA+TGG | + | chr5.3:10370200-10370219 | None:intergenic | 25.0% |
| !! | AACCATTTGGTTTATCATTT+GGG | + | chr5.3:10372171-10372190 | None:intergenic | 25.0% |
| !! | TTCACATGTGTTATTGTATA+GGG | + | chr5.3:10371165-10371184 | None:intergenic | 25.0% |
| !! | TTGATGATAGCTATGAAATA+TGG | + | chr5.3:10370325-10370344 | None:intergenic | 25.0% |
| !! | TTTCACATGTGTTATTGTAT+AGG | + | chr5.3:10371166-10371185 | None:intergenic | 25.0% |
| !!! | CTTGAAAGTTTTTTTGTGAA+GGG | + | chr5.3:10371491-10371510 | None:intergenic | 25.0% |
| !!! | TCTTGAAAGTTTTTTTGTGA+AGG | + | chr5.3:10371492-10371511 | None:intergenic | 25.0% |
| ACAGAGAACAAATCTTTCAT+TGG | - | chr5.3:10371544-10371563 | MS.gene047686:intron | 30.0% | |
| AGCAATAATTTAGTACCTCT+TGG | + | chr5.3:10370288-10370307 | None:intergenic | 30.0% | |
| ATTGCAGTATCAACAAAGAT+TGG | - | chr5.3:10372108-10372127 | MS.gene047686:intron | 30.0% | |
| CACTAATAAACAAATAGGAG+TGG | - | chr5.3:10371700-10371719 | MS.gene047686:intron | 30.0% | |
| CATAATAACGTATGCATATG+TGG | - | chr5.3:10370405-10370424 | MS.gene047686:CDS | 30.0% | |
| CCTTATTAAAGACATTGCAA+GGG | + | chr5.3:10372353-10372372 | None:intergenic | 30.0% | |
| GAGCTAAAAATTTAACTGCA+TGG | - | chr5.3:10371103-10371122 | MS.gene047686:intron | 30.0% | |
| GCGATCACTAATAAACAAAT+AGG | - | chr5.3:10371695-10371714 | MS.gene047686:intron | 30.0% | |
| GTAAGCTATATGAATACCTT+GGG | - | chr5.3:10370759-10370778 | MS.gene047686:intron | 30.0% | |
| TTTGCTGATCAAGAACTATT+AGG | - | chr5.3:10372385-10372404 | MS.gene047686:CDS | 30.0% | |
| ! | ATGTGAAAGCTTTAATAGCT+GGG | - | chr5.3:10371178-10371197 | MS.gene047686:intron | 30.0% |
| ! | GAACCATTTGGTTTATCATT+TGG | + | chr5.3:10372172-10372191 | None:intergenic | 30.0% |
| ! | TATGATCTTTTACCATCAAG+AGG | + | chr5.3:10370788-10370807 | None:intergenic | 30.0% |
| ! | TTTTTCATGTGTTTGGACTT+TGG | + | chr5.3:10371914-10371933 | None:intergenic | 30.0% |
| ! | TTTTTGACACAACCAGAATT+AGG | - | chr5.3:10371575-10371594 | MS.gene047686:intron | 30.0% |
| !! | GTTTTAACACTTTGTCTTGT+TGG | + | chr5.3:10372471-10372490 | None:intergenic | 30.0% |
| !!! | AGGTTTTTAAAGCCTAATTC+TGG | + | chr5.3:10371590-10371609 | None:intergenic | 30.0% |
| AACTTGGTTGCTAAGAATTG+TGG | + | chr5.3:10372208-10372227 | None:intergenic | 35.0% | |
| AAGCATGATGCATACATATG+TGG | - | chr5.3:10370357-10370376 | MS.gene047686:CDS | 35.0% | |
| AGATACGCAAAAAGCTCTTT+CGG | + | chr5.3:10372583-10372602 | None:intergenic | 35.0% | |
| AGCCCAAATGATAAACCAAA+TGG | - | chr5.3:10372166-10372185 | MS.gene047686:intron | 35.0% | |
| AGTGTCACACAAAACAACTA+TGG | - | chr5.3:10372418-10372437 | MS.gene047686:CDS | 35.0% | |
| ATCACTTTGACATCATTAGC+AGG | + | chr5.3:10372526-10372545 | None:intergenic | 35.0% | |
| CATGAGACTAATTCTCGAAT+CGG | + | chr5.3:10370726-10370745 | None:intergenic | 35.0% | |
| CCAAATAACATGGAACCATT+TGG | + | chr5.3:10372184-10372203 | None:intergenic | 35.0% | |
| CCAAATGGTTCCATGTTATT+TGG | - | chr5.3:10372181-10372200 | MS.gene047686:intron | 35.0% | |
| CCCTTGCAATGTCTTTAATA+AGG | - | chr5.3:10372350-10372369 | MS.gene047686:CDS | 35.0% | |
| CTCCGTAAGTATACAATCTT+TGG | - | chr5.3:10370950-10370969 | MS.gene047686:intron | 35.0% | |
| GAATTGTGGTCCAAATAACA+TGG | + | chr5.3:10372194-10372213 | None:intergenic | 35.0% | |
| GGTAAGCTATATGAATACCT+TGG | - | chr5.3:10370758-10370777 | MS.gene047686:intron | 35.0% | |
| GTACTAGTAAGTTTCAAGAC+TGG | + | chr5.3:10371643-10371662 | None:intergenic | 35.0% | |
| TAAGTTTCAAGACTGGAGTT+GGG | + | chr5.3:10371636-10371655 | None:intergenic | 35.0% | |
| TATCATAAACCTCTATCGGT+CGG | + | chr5.3:10370584-10370603 | None:intergenic | 35.0% | |
| TCACTTTGACATCATTAGCA+GGG | + | chr5.3:10372525-10372544 | None:intergenic | 35.0% | |
| TGCGTATCTTCAAGAAATTG+CGG | - | chr5.3:10372594-10372613 | MS.gene047686:CDS | 35.0% | |
| ! | ATTCTGACCTGATTTGAAGT+TGG | + | chr5.3:10370616-10370635 | None:intergenic | 35.0% |
| ! | CATGTGAAAGCTTTAATAGC+TGG | - | chr5.3:10371177-10371196 | MS.gene047686:intron | 35.0% |
| ! | GCCTTATTAAAGACATTGCA+AGG | + | chr5.3:10372354-10372373 | None:intergenic | 35.0% |
| ! | TGAAGACAGTTGATACAACT+TGG | + | chr5.3:10372224-10372243 | None:intergenic | 35.0% |
| ! | TTCGAGAATTAGTCTCATGA+CGG | - | chr5.3:10370727-10370746 | MS.gene047686:intron | 35.0% |
| AAGAAGCTTAGATCAGGAGA+AGG | + | chr5.3:10370256-10370275 | None:intergenic | 40.0% | |
| ACAAAGATTGGATTCCAGCT+TGG | - | chr5.3:10372120-10372139 | MS.gene047686:intron | 40.0% | |
| AGAGCAAAGAGTTATCCTAG+TGG | - | chr5.3:10370141-10370160 | MS.gene047686:CDS | 40.0% | |
| AGAGTCAAGAAGCTTAGATC+AGG | + | chr5.3:10370262-10370281 | None:intergenic | 40.0% | |
| AGGATAACTCTTTGCTCTTG+TGG | + | chr5.3:10370139-10370158 | None:intergenic | 40.0% | |
| CATAATCTTTGTGTCCAAGC+TGG | + | chr5.3:10372137-10372156 | None:intergenic | 40.0% | |
| CGTATCTTCAAGAAATTGCG+GGG | - | chr5.3:10372596-10372615 | MS.gene047686:CDS | 40.0% | |
| GAGCAAAGAGTTATCCTAGT+GGG | - | chr5.3:10370142-10370161 | MS.gene047686:CDS | 40.0% | |
| GATTGTTGATGCTGATCACA+TGG | - | chr5.3:10372543-10372562 | MS.gene047686:CDS | 40.0% | |
| GCGTATCTTCAAGAAATTGC+GGG | - | chr5.3:10372595-10372614 | MS.gene047686:CDS | 40.0% | |
| GGAATAGGCTGTAGAGAATT+AGG | + | chr5.3:10371610-10371629 | None:intergenic | 40.0% | |
| GGATACAAGACATTTCGTGT+TGG | - | chr5.3:10369934-10369953 | MS.gene047686:CDS | 40.0% | |
| GTAAGTTTCAAGACTGGAGT+TGG | + | chr5.3:10371637-10371656 | None:intergenic | 40.0% | |
| GTATCTTCAAGAAATTGCGG+GGG | - | chr5.3:10372597-10372616 | MS.gene047686:CDS | 40.0% | |
| GTCTATGCCAACTTCAAATC+AGG | - | chr5.3:10370606-10370625 | MS.gene047686:intron | 40.0% | |
| ! | ACAGCAGCTGCAATTTTGTT+AGG | + | chr5.3:10370214-10370233 | None:intergenic | 40.0% |
| !! | AGACATTTCGTGTTGGTTCA+TGG | - | chr5.3:10369941-10369960 | MS.gene047686:CDS | 40.0% |
| !! | AGTCTCATGACGGATACAAA+GGG | - | chr5.3:10370737-10370756 | MS.gene047686:intron | 40.0% |
| !! | TAGTCTCATGACGGATACAA+AGG | - | chr5.3:10370736-10370755 | MS.gene047686:intron | 40.0% |
| AGGTGGGATGTGTATATCTG+TGG | - | chr5.3:10370174-10370193 | MS.gene047686:CDS | 45.0% | |
| ATTGCCCTGTTGAAATCTGC+TGG | - | chr5.3:10369998-10370017 | MS.gene047686:CDS | 45.0% | |
| CGCAAAAAGCTCTTTCGGTT+TGG | + | chr5.3:10372578-10372597 | None:intergenic | 45.0% | |
| CTTCTTGACTCTTCTCCAAG+AGG | - | chr5.3:10370270-10370289 | MS.gene047686:intron | 45.0% | |
| GATGTGTATATCTGTGGCCA+TGG | - | chr5.3:10370180-10370199 | MS.gene047686:CDS | 45.0% | |
| GTATCAACTGTCTTCACCTG+AGG | - | chr5.3:10372228-10372247 | MS.gene047686:intron | 45.0% | |
| GTGTCCAGCAGATTTCAACA+GGG | + | chr5.3:10370005-10370024 | None:intergenic | 45.0% | |
| TAAACCTCTATCGGTCGGTT+TGG | + | chr5.3:10370579-10370598 | None:intergenic | 45.0% | |
| TGATCAGCAAAGCTACGAAC+AGG | + | chr5.3:10372376-10372395 | None:intergenic | 45.0% | |
| TTAACCAAACCGACCGATAG+AGG | - | chr5.3:10370572-10370591 | MS.gene047686:intron | 45.0% | |
| TTCAAGACTGGAGTTGGGTT+GGG | + | chr5.3:10371631-10371650 | None:intergenic | 45.0% | |
| TTTCAAGACTGGAGTTGGGT+TGG | + | chr5.3:10371632-10371651 | None:intergenic | 45.0% | |
| ! | ATCCTAGTGGGTCATAGCTT+AGG | - | chr5.3:10370154-10370173 | MS.gene047686:CDS | 45.0% |
| ! | TAGTGGGTCATAGCTTAGGT+GGG | - | chr5.3:10370158-10370177 | MS.gene047686:CDS | 45.0% |
| ! | TTGATTAGCCAGCATACCTC+AGG | + | chr5.3:10372247-10372266 | None:intergenic | 45.0% |
| !! | CTCTTTCGGTTTGGAGAACA+TGG | + | chr5.3:10372569-10372588 | None:intergenic | 45.0% |
| ACATTGCAAGGGACAAGTCC+TGG | + | chr5.3:10372342-10372361 | None:intergenic | 50.0% | |
| CACCTAAGCTATGACCCACT+AGG | + | chr5.3:10370159-10370178 | None:intergenic | 50.0% | |
| CGAAGTCACAACCCTAGACA+TGG | - | chr5.3:10370024-10370043 | MS.gene047686:CDS | 50.0% | |
| CGTGTCCAGCAGATTTCAAC+AGG | + | chr5.3:10370006-10370025 | None:intergenic | 50.0% | |
| TACCTTGGGACACCTCTTGA+TGG | - | chr5.3:10370773-10370792 | MS.gene047686:intron | 50.0% | |
| TCCAAAGCAAGTGCATGAGC+TGG | - | chr5.3:10370063-10370082 | MS.gene047686:CDS | 50.0% | |
| TCCAGAAGCAGCCATGTCTA+GGG | + | chr5.3:10370038-10370057 | None:intergenic | 50.0% | |
| TCCAGCTCATGCACTTGCTT+TGG | + | chr5.3:10370067-10370086 | None:intergenic | 50.0% | |
| TGGTTCATGGAGCTTGCCAT+GGG | - | chr5.3:10369954-10369973 | MS.gene047686:CDS | 50.0% | |
| TGTCTTCACCTGAGGTATGC+TGG | - | chr5.3:10372236-10372255 | MS.gene047686:intron | 50.0% | |
| TTCCAGAAGCAGCCATGTCT+AGG | + | chr5.3:10370039-10370058 | None:intergenic | 50.0% | |
| TTGGTTCATGGAGCTTGCCA+TGG | - | chr5.3:10369953-10369972 | MS.gene047686:CDS | 50.0% | |
| ! | CTAGTGGGTCATAGCTTAGG+TGG | - | chr5.3:10370157-10370176 | MS.gene047686:CDS | 50.0% |
| ! | GCTCATGCACTTGCTTTGGA+TGG | + | chr5.3:10370063-10370082 | None:intergenic | 50.0% |
| !! | ACTGGAGTTGGGTTGGGAAT+AGG | + | chr5.3:10371625-10371644 | None:intergenic | 50.0% |
| !! | TACCATCAAGAGGTGTCCCA+AGG | + | chr5.3:10370778-10370797 | None:intergenic | 50.0% |
| ACCCTAGACATGGCTGCTTC+TGG | - | chr5.3:10370034-10370053 | MS.gene047686:CDS | 55.0% | |
| GGTTCATGGAGCTTGCCATG+GGG | - | chr5.3:10369955-10369974 | MS.gene047686:CDS | 55.0% | |
| TGTACCAACACCATGCCCCA+TGG | + | chr5.3:10369973-10369992 | None:intergenic | 55.0% | |
| ATGGAGCTTGCCATGGGGCA+TGG | - | chr5.3:10369960-10369979 | MS.gene047686:CDS | 60.0% | |
| CTTGCCATGGGGCATGGTGT+TGG | - | chr5.3:10369966-10369985 | MS.gene047686:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 10369932 | 10372630 | 10369932 | ID=MS.gene047686 |
| chr5.3 | mRNA | 10369932 | 10372630 | 10369932 | ID=MS.gene047686.t1;Parent=MS.gene047686 |
| chr5.3 | exon | 10372271 | 10372630 | 10372271 | ID=MS.gene047686.t1.exon1;Parent=MS.gene047686.t1 |
| chr5.3 | CDS | 10372271 | 10372630 | 10372271 | ID=cds.MS.gene047686.t1;Parent=MS.gene047686.t1 |
| chr5.3 | exon | 10370313 | 10370447 | 10370313 | ID=MS.gene047686.t1.exon2;Parent=MS.gene047686.t1 |
| chr5.3 | CDS | 10370313 | 10370447 | 10370313 | ID=cds.MS.gene047686.t1;Parent=MS.gene047686.t1 |
| chr5.3 | exon | 10369932 | 10370219 | 10369932 | ID=MS.gene047686.t1.exon3;Parent=MS.gene047686.t1 |
| chr5.3 | CDS | 10369932 | 10370219 | 10369932 | ID=cds.MS.gene047686.t1;Parent=MS.gene047686.t1 |
| Gene Sequence |
| Protein sequence |
