AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene049091

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049091.t1 MTR_6g087040 84.325 504 79 0 1 504 1 504 0.0 890
MS.gene049091.t1 MTR_6g088375 84.325 504 79 0 1 504 1 504 0.0 890
MS.gene049091.t1 MTR_8g102860 76.316 494 117 0 13 506 13 506 0.0 794
MS.gene049091.t1 MTR_8g102860 75.551 454 111 0 53 506 1 454 0.0 722
MS.gene049091.t1 MTR_0204s0020 58.859 491 198 3 8 497 3 490 0.0 611
MS.gene049091.t1 MTR_5g094760 57.002 507 213 4 1 505 1 504 0.0 601
MS.gene049091.t1 MTR_0204s0020 58.452 491 197 4 8 497 3 487 0.0 600
MS.gene049091.t1 MTR_7g091690 58.233 498 203 4 1 496 1 495 0.0 597
MS.gene049091.t1 MTR_0204s0040 55.888 501 214 4 2 501 8 502 0.0 593
MS.gene049091.t1 MTR_4g116770 55.888 501 214 4 2 501 204 698 0.0 592
MS.gene049091.t1 MTR_4g116790 55.010 509 222 5 3 510 6 508 0.0 576
MS.gene049091.t1 MTR_5g006070 55.847 496 213 6 18 509 14 507 0.0 570
MS.gene049091.t1 MTR_3g008160 53.909 486 221 3 18 501 15 499 0.0 534
MS.gene049091.t1 MTR_1g038630 53.488 516 227 6 1 508 1 511 0.0 532
MS.gene049091.t1 MTR_5g006070 55.098 461 201 6 53 509 1 459 0.0 524
MS.gene049091.t1 MTR_1g104780 54.455 505 221 7 1 501 1 500 0.0 520
MS.gene049091.t1 MTR_1g104750 50.000 502 244 5 1 499 1 498 1.11e-179 514
MS.gene049091.t1 MTR_5g082540 52.361 487 227 4 18 501 15 499 1.43e-179 514
MS.gene049091.t1 MTR_1g104770 49.901 503 244 6 1 499 1 499 4.05e-179 513
MS.gene049091.t1 MTR_4g091370 54.582 491 218 3 18 504 15 504 1.16e-176 507
MS.gene049091.t1 MTR_0009s0370 50.098 509 248 4 7 510 2 509 2.87e-175 503
MS.gene049091.t1 MTR_3g008170 50.101 493 242 4 21 510 18 509 1.82e-174 501
MS.gene049091.t1 MTR_3g008160 53.437 451 207 3 53 501 1 450 7.60e-172 493
MS.gene049091.t1 MTR_3g023480 50.000 510 245 5 10 512 5 511 9.05e-172 494
MS.gene049091.t1 MTR_5g041550 51.683 505 233 6 1 499 1 500 3.78e-171 493
MS.gene049091.t1 MTR_3g093010 50.484 517 246 6 1 512 1 512 5.86e-170 490
MS.gene049091.t1 MTR_1g038600 50.874 515 224 7 1 508 1 493 8.40e-170 489
MS.gene049091.t1 MTR_3g074410 47.151 509 261 8 1 505 1 505 4.66e-162 469
MS.gene049091.t1 MTR_3g074390 48.479 493 245 8 21 509 23 510 2.72e-161 468
MS.gene049091.t1 MTR_4g090600 51.195 502 235 6 9 505 10 506 1.55e-157 458
MS.gene049091.t1 MTR_3g074270 47.705 501 235 7 1 499 1 476 3.27e-157 456
MS.gene049091.t1 MTR_3g007910 47.348 509 228 7 1 505 1 473 2.69e-156 454
MS.gene049091.t1 MTR_4g116790 55.068 365 158 4 3 366 6 365 4.44e-148 429
MS.gene049091.t1 MTR_3g093060 47.788 452 229 4 53 498 1 451 1.26e-144 423
MS.gene049091.t1 MTR_3g074380 47.967 369 187 5 1 367 1 366 1.13e-110 333
MS.gene049091.t1 MTR_3g074340 45.048 313 166 6 191 499 20 330 2.35e-92 285
MS.gene049091.t1 MTR_3g074370 45.048 313 166 6 191 499 20 330 3.14e-92 285
MS.gene049091.t1 MTR_3g074320 45.048 313 166 6 191 499 20 330 3.62e-92 285
MS.gene049091.t1 MTR_3g074400 36.703 455 223 10 53 480 1 417 3.47e-82 262
MS.gene049091.t1 MTR_6g088450 28.630 489 297 13 8 478 45 499 7.06e-58 200
MS.gene049091.t1 MTR_8g103500 27.423 485 310 10 21 489 13 471 2.24e-54 191
MS.gene049091.t1 MTR_4g072030 28.150 508 313 13 28 510 26 506 4.55e-53 187
MS.gene049091.t1 MTR_3g084110 29.102 512 328 13 10 509 7 495 7.18e-52 184
MS.gene049091.t1 MTR_4g069500 26.096 502 330 9 26 507 29 509 2.89e-51 183
MS.gene049091.t1 MTR_4g069500 27.009 448 307 6 79 507 13 459 3.96e-50 179
MS.gene049091.t1 MTR_7g005910 28.340 494 321 11 25 510 32 500 2.34e-49 177
MS.gene049091.t1 MTR_1g116660 28.425 489 320 12 25 506 34 499 3.39e-49 177
MS.gene049091.t1 MTR_6g018790 31.291 457 282 10 32 485 111 538 3.64e-49 177
MS.gene049091.t1 MTR_7g082270 29.011 455 295 8 32 485 71 498 6.38e-48 173
MS.gene049091.t1 MTR_8g077890 28.600 493 301 12 26 492 18 485 8.00e-48 173
MS.gene049091.t1 MTR_1g116650 28.889 495 307 11 25 511 77 534 1.41e-47 173
MS.gene049091.t1 MTR_7g446340 27.160 486 302 13 25 492 54 505 8.57e-47 171
MS.gene049091.t1 MTR_6g007340 27.160 486 302 13 25 492 54 505 8.57e-47 171
MS.gene049091.t1 MTR_5g075300 27.823 496 310 10 21 492 14 485 8.98e-47 170
MS.gene049091.t1 MTR_3g116240 27.515 487 300 12 26 485 27 487 1.57e-45 167
MS.gene049091.t1 MTR_2g013310 25.996 477 316 12 26 491 52 502 2.79e-44 164
MS.gene049091.t1 MTR_7g082270 29.723 397 252 7 32 428 71 440 1.04e-43 161
MS.gene049091.t1 MTR_4g077740 28.298 470 293 12 34 485 53 496 2.54e-43 160
MS.gene049091.t1 MTR_4g013205 29.188 394 262 7 96 485 88 468 3.58e-43 160
MS.gene049091.t1 MTR_2g013310 27.179 390 270 8 111 491 45 429 6.46e-43 158
MS.gene049091.t1 MTR_5g096000 44.385 187 81 2 1 187 1 164 2.30e-41 150
MS.gene049091.t1 MTR_5g096000 51.938 129 62 0 377 505 176 304 1.48e-33 129
MS.gene049091.t1 MTR_2g049020 29.942 344 215 6 35 371 35 359 4.04e-40 153
MS.gene049091.t1 MTR_1g038620 46.541 159 67 2 206 364 50 190 6.08e-40 143
MS.gene049091.t1 MTR_2g026160 30.814 344 203 8 25 355 26 347 2.98e-39 150
MS.gene049091.t1 MTR_3g074330 51.235 162 68 3 1 155 1 158 3.12e-39 141
MS.gene049091.t1 MTR_3g074360 51.235 162 68 3 1 155 1 158 3.12e-39 141
MS.gene049091.t1 MTR_6g087910 27.665 394 268 7 94 485 104 482 8.09e-39 148
MS.gene049091.t1 MTR_2g048720 31.595 326 198 7 35 355 35 340 9.67e-39 149
MS.gene049091.t1 MTR_3g074310 50.617 162 69 3 1 155 1 158 1.76e-38 139
MS.gene049091.t1 MTR_5g077580 27.353 563 282 18 35 501 35 566 3.67e-38 147
MS.gene049091.t1 MTR_8g077310 25.486 463 312 8 27 485 48 481 1.58e-36 141
MS.gene049091.t1 MTR_7g113970 26.988 415 277 10 86 492 102 498 3.77e-36 140
MS.gene049091.t1 MTR_7g113960 27.340 406 271 9 86 485 67 454 5.14e-36 140
MS.gene049091.t1 MTR_1g022315 27.073 410 285 7 86 490 89 489 9.81e-36 139
MS.gene049091.t1 MTR_5g019870 28.798 441 277 12 81 492 50 482 1.25e-35 139
MS.gene049091.t1 MTR_8g077310 26.650 394 274 8 97 485 1 384 1.54e-35 137
MS.gene049091.t1 MTR_8g077300 27.340 406 278 7 86 485 79 473 2.24e-35 138
MS.gene049091.t1 MTR_1g022315 27.436 390 269 7 106 490 10 390 3.41e-35 136
MS.gene049091.t1 MTR_5g020270 25.845 414 284 8 86 490 90 489 6.87e-35 137
MS.gene049091.t1 MTR_3g080240 26.329 395 274 10 96 485 145 527 1.44e-34 137
MS.gene049091.t1 MTR_5g020270 26.478 389 263 8 111 490 15 389 1.47e-34 134
MS.gene049091.t1 MTR_7g094450 26.366 421 288 6 67 485 69 469 2.81e-34 135
MS.gene049091.t1 MTR_4g118610 29.782 413 255 12 86 485 92 482 5.20e-33 131
MS.gene049091.t1 MTR_4g064820 29.915 351 212 8 34 366 104 438 1.36e-32 130
MS.gene049091.t1 MTR_2g020710 27.027 407 272 10 87 485 1 390 6.25e-31 124
MS.gene049091.t1 MTR_2g020710 26.961 408 273 10 86 485 89 479 7.86e-31 125
MS.gene049091.t1 MTR_0064s0040 42.029 138 68 1 18 155 16 141 2.49e-30 116
MS.gene049091.t1 MTR_5g020270 25.183 409 272 9 86 490 90 468 1.21e-29 121
MS.gene049091.t1 MTR_2g026140 27.221 349 207 9 36 371 34 348 1.67e-29 122
MS.gene049091.t1 MTR_7g094110 26.353 425 283 9 67 485 71 471 1.81e-29 121
MS.gene049091.t1 MTR_4g069500 24.611 321 223 5 205 507 1 320 4.52e-29 117
MS.gene049091.t1 MTR_7g113960 29.091 275 177 6 86 355 67 328 2.02e-25 108
MS.gene049091.t1 MTR_8g077310 26.962 293 199 6 86 376 87 366 2.95e-25 108
MS.gene049091.t1 MTR_3g116060 35.057 174 111 2 91 263 50 222 5.08e-24 106
MS.gene049091.t1 MTR_7g113970 28.179 291 186 9 86 368 102 377 1.09e-23 103
MS.gene049091.t1 MTR_7g094110 24.764 424 271 9 67 485 71 451 9.82e-23 101
MS.gene049091.t1 MTR_5g024740 28.571 238 149 5 27 262 5 223 3.03e-22 100
MS.gene049091.t1 MTR_1g114280 36.364 154 77 3 350 501 21 155 3.37e-22 93.6
MS.gene049091.t1 MTR_3g118530 34.503 171 111 1 94 263 54 224 1.39e-21 99.0
MS.gene049091.t1 MTR_3g118530 34.503 171 111 1 94 263 54 224 1.82e-21 98.6
MS.gene049091.t1 MTR_8g073100 27.572 243 160 5 79 306 39 280 7.56e-21 96.7
MS.gene049091.t1 MTR_4g118610 28.779 344 210 12 86 416 92 413 1.00e-20 95.1
MS.gene049091.t1 MTR_5g044910 29.379 177 124 1 87 262 47 223 1.45e-20 95.9
MS.gene049091.t1 MTR_2g020710 25.740 338 226 10 86 415 89 409 2.59e-20 93.6
MS.gene049091.t1 MTR_2g020710 25.664 339 227 10 86 416 89 410 3.07e-20 93.6
MS.gene049091.t1 MTR_2g020710 27.018 285 187 8 86 363 89 359 1.27e-19 90.9
MS.gene049091.t1 MTR_5g082760 23.171 410 261 13 90 480 134 508 9.28e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049091.t1 AT1G77210 73.016 504 136 0 1 504 1 504 0.0 777
MS.gene049091.t1 AT1G77210 73.016 504 136 0 1 504 1 504 0.0 777
MS.gene049091.t1 AT4G02050 59.649 513 201 5 1 510 1 510 0.0 624
MS.gene049091.t1 AT4G02050 59.649 513 201 5 1 510 1 510 0.0 624
MS.gene049091.t1 AT5G26340 55.750 513 219 6 1 509 1 509 0.0 572
MS.gene049091.t1 AT3G19940 51.717 495 231 3 22 509 21 514 0.0 548
MS.gene049091.t1 AT1G50310 53.002 483 223 3 22 501 21 502 0.0 538
MS.gene049091.t1 AT1G11260 52.751 527 227 7 1 511 1 521 0.0 538
MS.gene049091.t1 AT1G77210 72.000 350 98 0 155 504 6 355 0.0 534
MS.gene049091.t1 AT3G19930 52.277 505 231 6 1 501 1 499 0.0 524
MS.gene049091.t1 AT3G19930 52.277 505 231 6 1 501 1 499 0.0 524
MS.gene049091.t1 AT5G23270 52.259 509 228 7 1 501 1 502 0.0 520
MS.gene049091.t1 AT4G21480 52.165 485 227 4 18 499 15 497 3.75e-174 500
MS.gene049091.t1 AT5G26250 49.901 503 244 5 10 510 9 505 5.84e-174 500
MS.gene049091.t1 AT3G05960 50.103 487 240 3 14 499 9 493 1.00e-170 491
MS.gene049091.t1 AT5G61520 47.791 498 251 5 21 511 19 514 6.43e-158 459
MS.gene049091.t1 AT1G34580 45.562 507 260 9 1 498 1 500 1.02e-149 438
MS.gene049091.t1 AT1G07340 46.612 487 254 6 18 501 15 498 3.96e-148 434
MS.gene049091.t1 AT5G61520 47.109 467 238 5 52 511 2 466 2.98e-143 420
MS.gene049091.t1 AT1G34580 45.275 455 235 8 53 498 1 450 1.63e-133 395
MS.gene049091.t1 AT1G50310 51.429 350 166 3 155 501 11 359 1.91e-127 376
MS.gene049091.t1 AT4G36670 30.137 511 300 13 26 512 16 493 4.69e-58 200
MS.gene049091.t1 AT2G18480 30.655 473 280 11 40 489 36 483 1.14e-57 200
MS.gene049091.t1 AT3G18830 28.429 503 317 11 26 506 35 516 1.34e-57 200
MS.gene049091.t1 AT2G16130 29.448 489 302 10 26 492 25 492 4.13e-56 196
MS.gene049091.t1 AT2G16120 28.600 507 315 11 26 510 25 506 2.04e-55 194
MS.gene049091.t1 AT5G17010 30.550 491 299 12 12 485 33 498 7.31e-48 173
MS.gene049091.t1 AT5G17010 30.550 491 299 12 12 485 33 498 7.31e-48 173
MS.gene049091.t1 AT5G17010 30.550 491 299 12 12 485 33 498 7.31e-48 173
MS.gene049091.t1 AT5G16150 30.297 472 297 9 19 487 98 540 1.10e-46 171
MS.gene049091.t1 AT5G16150 30.297 472 297 9 19 487 98 540 1.10e-46 171
MS.gene049091.t1 AT5G16150 30.297 472 297 9 19 487 98 540 1.10e-46 171
MS.gene049091.t1 AT5G59250 28.937 508 309 13 3 485 72 552 1.14e-46 171
MS.gene049091.t1 AT2G43330 28.838 482 308 11 25 498 30 484 1.35e-45 167
MS.gene049091.t1 AT3G03090 29.060 468 292 10 34 485 55 498 1.38e-43 161
MS.gene049091.t1 AT2G20780 27.168 519 320 16 11 511 40 518 1.86e-43 161
MS.gene049091.t1 AT2G20780 28.381 451 285 15 79 511 30 460 1.95e-42 157
MS.gene049091.t1 AT2G35740 26.821 563 288 16 25 490 25 560 3.46e-42 159
MS.gene049091.t1 AT4G16480 32.055 365 211 9 23 373 24 365 6.93e-42 158
MS.gene049091.t1 AT4G16480 32.055 365 211 9 23 373 24 365 6.93e-42 158
MS.gene049091.t1 AT4G16480 32.055 365 211 9 23 373 24 365 6.93e-42 158
MS.gene049091.t1 AT1G08930 28.571 427 255 11 86 492 98 494 8.85e-41 154
MS.gene049091.t1 AT1G08930 28.571 427 255 11 86 492 98 494 8.85e-41 154
MS.gene049091.t1 AT1G67300 28.852 357 236 8 96 448 103 445 6.37e-40 150
MS.gene049091.t1 AT1G67300 28.852 357 236 8 96 448 103 445 6.37e-40 150
MS.gene049091.t1 AT1G67300 28.141 398 264 8 96 485 103 486 6.88e-40 151
MS.gene049091.t1 AT1G08900 29.484 407 263 9 86 485 23 412 2.92e-39 148
MS.gene049091.t1 AT3G05400 28.434 415 269 11 86 491 66 461 3.96e-39 148
MS.gene049091.t1 AT1G08900 29.484 407 263 9 86 485 57 446 5.33e-39 148
MS.gene049091.t1 AT1G08900 29.484 407 263 9 86 485 65 454 5.45e-39 148
MS.gene049091.t1 AT1G08900 29.484 407 263 9 86 485 65 454 5.45e-39 148
MS.gene049091.t1 AT1G67300 28.392 398 262 9 96 485 103 485 1.09e-38 147
MS.gene049091.t1 AT1G67300 28.392 398 262 9 96 485 103 485 1.09e-38 147
MS.gene049091.t1 AT1G67300 28.869 336 223 7 96 427 103 426 2.15e-38 145
MS.gene049091.t1 AT1G67300 28.869 336 223 7 96 427 103 426 2.15e-38 145
MS.gene049091.t1 AT1G79820 27.250 400 280 5 87 485 97 486 2.55e-38 147
MS.gene049091.t1 AT1G79820 27.250 400 280 5 87 485 97 486 2.55e-38 147
MS.gene049091.t1 AT3G05155 27.423 423 284 10 71 485 47 454 2.79e-38 146
MS.gene049091.t1 AT1G54730 27.093 454 298 8 34 485 39 461 3.67e-38 145
MS.gene049091.t1 AT3G05400 29.847 392 237 13 119 491 69 441 8.03e-38 144
MS.gene049091.t1 AT1G30220 28.746 327 209 7 35 355 37 345 1.29e-37 146
MS.gene049091.t1 AT1G08890 29.310 406 265 9 86 485 67 456 1.35e-37 144
MS.gene049091.t1 AT5G27360 27.061 473 303 9 19 485 28 464 3.61e-37 143
MS.gene049091.t1 AT1G79820 27.507 349 243 4 87 435 97 435 4.94e-37 142
MS.gene049091.t1 AT5G27350 28.041 485 283 12 19 485 24 460 6.60e-37 142
MS.gene049091.t1 AT5G27360 27.521 476 297 10 19 485 76 512 8.64e-37 143
MS.gene049091.t1 AT1G05030 29.426 401 260 12 95 487 78 463 5.33e-36 140
MS.gene049091.t1 AT1G05030 28.475 446 296 12 50 487 85 515 5.82e-36 140
MS.gene049091.t1 AT2G48020 26.601 406 276 6 86 485 68 457 1.57e-35 138
MS.gene049091.t1 AT2G48020 26.601 406 276 6 86 485 68 457 1.57e-35 138
MS.gene049091.t1 AT1G75220 27.007 411 283 7 86 490 88 487 3.09e-35 138
MS.gene049091.t1 AT4G04760 27.966 472 303 10 26 492 31 470 7.43e-35 137
MS.gene049091.t1 AT4G04760 28.605 430 282 8 68 492 2 411 1.16e-34 135
MS.gene049091.t1 AT4G04750 28.467 411 274 8 86 492 80 474 2.90e-34 135
MS.gene049091.t1 AT4G04750 28.467 411 274 8 86 492 80 474 2.90e-34 135
MS.gene049091.t1 AT4G04750 28.467 411 274 8 86 492 124 518 2.99e-34 135
MS.gene049091.t1 AT5G27360 29.132 357 231 8 135 485 20 360 4.58e-34 132
MS.gene049091.t1 AT5G27360 29.132 357 231 8 135 485 20 360 4.58e-34 132
MS.gene049091.t1 AT5G18840 27.792 403 276 7 86 485 84 474 1.69e-33 133
MS.gene049091.t1 AT1G54730 26.585 410 268 8 34 441 39 417 2.39e-33 132
MS.gene049091.t1 AT3G05150 27.696 408 270 9 86 485 75 465 2.88e-33 132
MS.gene049091.t1 AT3G05150 27.696 408 270 9 86 485 75 465 3.03e-33 132
MS.gene049091.t1 AT3G05150 27.696 408 270 9 86 485 75 465 3.03e-33 132
MS.gene049091.t1 AT1G19450 27.251 411 282 7 86 490 89 488 3.41e-33 132
MS.gene049091.t1 AT3G05160 27.907 430 269 12 73 485 45 450 5.31e-33 131
MS.gene049091.t1 AT1G54730 26.652 454 279 9 34 485 39 440 6.23e-33 130
MS.gene049091.t1 AT3G05165 26.555 418 290 8 73 485 54 459 8.49e-33 130
MS.gene049091.t1 AT3G05165 26.555 418 290 8 73 485 54 459 8.49e-33 130
MS.gene049091.t1 AT3G05165 26.555 418 290 8 73 485 54 459 8.49e-33 130
MS.gene049091.t1 AT1G08920 26.456 412 269 10 86 485 72 461 1.10e-32 130
MS.gene049091.t1 AT3G05160 27.913 412 259 11 88 485 14 401 1.48e-32 129
MS.gene049091.t1 AT3G05160 27.913 412 259 11 88 485 14 401 1.48e-32 129
MS.gene049091.t1 AT1G08920 26.014 419 269 10 86 485 72 468 1.28e-31 127
MS.gene049091.t1 AT1G08900 28.729 362 234 9 86 440 65 409 1.49e-31 126
MS.gene049091.t1 AT4G04760 27.893 484 283 13 26 491 31 466 8.23e-30 122
MS.gene049091.t1 AT1G08920 26.087 368 238 10 86 441 72 417 4.00e-28 117
MS.gene049091.t1 AT1G54730 26.098 410 249 9 34 441 39 396 4.41e-28 116
MS.gene049091.t1 AT3G05165 26.519 362 249 8 73 429 54 403 1.75e-27 115
MS.gene049091.t1 AT1G54730 26.234 385 251 8 34 416 39 392 1.95e-27 114
MS.gene049091.t1 AT1G54730 26.234 385 251 8 34 416 39 392 1.95e-27 114
MS.gene049091.t1 AT3G05165 26.519 362 249 8 73 429 54 403 2.10e-27 115
MS.gene049091.t1 AT3G05165 26.519 362 249 8 73 429 54 403 2.10e-27 115
MS.gene049091.t1 AT3G51490 30.252 238 147 5 27 263 5 224 3.54e-26 113
MS.gene049091.t1 AT3G51490 30.252 238 147 5 27 263 5 224 3.92e-26 113
MS.gene049091.t1 AT1G54730 27.469 324 204 7 34 355 39 333 5.17e-26 109
MS.gene049091.t1 AT1G79820 25.000 400 241 6 87 485 97 438 7.08e-26 110
MS.gene049091.t1 AT3G51490 35.057 174 111 2 91 263 2 174 8.57e-26 112
MS.gene049091.t1 AT3G20460 26.634 413 267 11 86 485 93 482 9.81e-26 110
MS.gene049091.t1 AT5G17010 26.598 485 266 13 12 485 30 435 3.06e-25 108
MS.gene049091.t1 AT5G27360 25.908 413 258 10 19 422 28 401 1.14e-24 107
MS.gene049091.t1 AT3G05155 26.838 272 184 7 86 355 67 325 3.98e-24 103
MS.gene049091.t1 AT1G54730 26.101 318 204 6 32 348 38 325 1.12e-23 102
MS.gene049091.t1 AT1G54730 26.101 318 204 6 32 348 38 325 1.12e-23 102
MS.gene049091.t1 AT4G35300 35.632 174 110 2 91 263 52 224 2.28e-23 104
MS.gene049091.t1 AT4G35300 35.632 174 110 2 91 263 52 224 2.28e-23 104
MS.gene049091.t1 AT4G35300 35.632 174 110 2 91 263 52 224 2.28e-23 104
MS.gene049091.t1 AT4G35300 35.632 174 110 2 91 263 52 224 2.28e-23 104
MS.gene049091.t1 AT4G35300 35.632 174 110 2 91 263 52 224 2.28e-23 104
MS.gene049091.t1 AT4G35300 35.632 174 110 2 91 263 52 224 2.28e-23 104
MS.gene049091.t1 AT4G35300 35.632 174 110 2 91 263 52 224 2.28e-23 104
MS.gene049091.t1 AT4G35300 35.632 174 110 2 91 263 52 224 2.49e-23 104
MS.gene049091.t1 AT4G35300 35.632 174 110 2 91 263 52 224 2.49e-23 104
MS.gene049091.t1 AT4G35300 35.632 174 110 2 91 263 52 224 2.49e-23 104
MS.gene049091.t1 AT2G48020 26.552 290 192 6 86 368 68 343 1.92e-22 99.8
MS.gene049091.t1 AT1G54730 25.714 385 232 9 34 416 39 371 5.39e-22 98.6
MS.gene049091.t1 AT2G48020 26.812 276 182 5 86 355 68 329 1.62e-21 96.3
MS.gene049091.t1 AT1G79820 25.691 362 206 7 127 485 75 376 1.51e-20 94.0
MS.gene049091.t1 AT1G20840 31.609 174 117 2 91 263 50 222 1.33e-19 92.8
MS.gene049091.t1 AT1G20840 31.609 174 117 2 91 263 50 222 1.33e-19 92.8

Find 104 sgRNAs with CRISPR-Local

Find 160 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAACTTGTTTGGGAATTT+TGG 0.137414 4.1:+3004559 MS.gene049091:CDS
GGATATGATCTTGGTGTTTC+AGG 0.160402 4.1:+3003849 MS.gene049091:CDS
GTAAGAAGATTCCATATTTA+AGG 0.160996 4.1:-3005586 None:intergenic
AACATTTATATGTTGATTAT+TGG 0.183002 4.1:+3004327 MS.gene049091:CDS
ATGGGAACTTGCTTTGTTTC+CGG 0.216465 4.1:-3005659 None:intergenic
CCAGCCATTGTTATGTTTAT+TGG 0.229033 4.1:+3004659 MS.gene049091:CDS
CTTTCAACTAACAACTTGTT+TGG 0.236475 4.1:+3004550 MS.gene049091:CDS
GCTCTTGGTGGCTCTCTCTT+TGG 0.250070 4.1:+3003828 MS.gene049091:CDS
ATTATTGGTCGTATCCTTCT+TGG 0.256145 4.1:+3004342 MS.gene049091:CDS
AATAGACCACAATTTGTAAT+TGG 0.260406 4.1:+3004866 MS.gene049091:CDS
GGTAGCTGCAGCAATTGTTT+TGG 0.266994 4.1:+3005331 MS.gene049091:intron
ATCCTTCTTGGCGTTGGAAT+TGG 0.286559 4.1:+3004354 MS.gene049091:CDS
GCAGCTGATCTTATCTCTAA+TGG 0.287553 4.1:-3005488 None:intergenic
AGACATTTCTGACAGATATA+AGG 0.298674 4.1:-3004495 None:intergenic
AATATGGCAGGTGGAGGATT+TGG 0.298867 4.1:+3003726 None:intergenic
TTTCATATTCTTTCTATTGC+CGG 0.305191 4.1:+3005640 MS.gene049091:CDS
TCACTCTGCCACCTTAAATA+TGG 0.307877 4.1:+3005575 MS.gene049091:CDS
GGAAGAGGCAAGAAAGGTTT+TGG 0.315780 4.1:+3004733 MS.gene049091:CDS
TGTTGAGAGAAGCAGCATTT+AGG 0.323015 4.1:-3004308 None:intergenic
TGTTTCCTCTCATACACATT+TGG 0.323425 4.1:-3004108 None:intergenic
TCTTGCATTGTTGGTGCTCT+TGG 0.323511 4.1:+3003813 MS.gene049091:CDS
CTTTATGAATACAAGATTAC+AGG 0.324011 4.1:+3003777 MS.gene049091:CDS
TGCAGGTGGAGTTACTTCTA+TGG 0.329077 4.1:+3004062 MS.gene049091:intron
TCTTCGAGAACCATTGGTTT+TGG 0.329646 4.1:+3005699 MS.gene049091:CDS
TTCCTGTTTGTGTTGGGATT+TGG 0.337472 4.1:+3005419 MS.gene049091:CDS
CTTGGCGTTGGAATTGGATT+TGG 0.338067 4.1:+3004360 MS.gene049091:CDS
TCTCTCTTTGGATATGATCT+TGG 0.345384 4.1:+3003840 MS.gene049091:CDS
GGTTCCATTAGCTTCTTCAT+TGG 0.349974 4.1:+3004279 MS.gene049091:CDS
CTCAAAAGAAGGTTCTGAAA+TGG 0.355481 4.1:-3004839 None:intergenic
CAGATCCAAATCCAAGAGTT+TGG 0.359984 4.1:-3004961 None:intergenic
TCTTGTGGAACAAGGCAAAA+TGG 0.361228 4.1:+3004712 MS.gene049091:CDS
GTTCTGAAATGGATTCTTGA+TGG 0.368445 4.1:-3004828 None:intergenic
CCTTGTTCCACAAGACTGTT+TGG 0.378394 4.1:-3004704 None:intergenic
TTTCAACTAACAACTTGTTT+GGG 0.390416 4.1:+3004551 MS.gene049091:CDS
GAGAAGATAAATCTCTTCAA+TGG 0.392608 4.1:-3005678 None:intergenic
GTTTCCTCTCATACACATTT+GGG 0.401650 4.1:-3004107 None:intergenic
CCAGTCAGTTGTTGGAATGC+AGG 0.407633 4.1:-3004902 None:intergenic
CAGCTGATCTTATCTCTAAT+GGG 0.408524 4.1:-3005487 None:intergenic
GTCTATTCTTTCTCAAAAGA+AGG 0.410688 4.1:-3004850 None:intergenic
TGTTGGGATTTGGAAGATCA+TGG 0.417917 4.1:+3005429 MS.gene049091:CDS
ACAAGACTGTTTGGTGTCTC+AGG 0.421620 4.1:-3004695 None:intergenic
GCCATTGTTATGTTTATTGG+TGG 0.426591 4.1:+3004662 MS.gene049091:CDS
TGCATTGTTGGTGCTCTTGG+TGG 0.427952 4.1:+3003816 MS.gene049091:CDS
GGAAGATCATGGGGACCCTT+AGG 0.430859 4.1:+3005440 MS.gene049091:CDS
TTCCAAATCCCAACACAAAC+AGG 0.432156 4.1:-3005421 None:intergenic
ACAATTTGTAATTGGTGCAT+TGG 0.443499 4.1:+3004874 MS.gene049091:CDS
GACATTTCTGACAGATATAA+GGG 0.447933 4.1:-3004494 None:intergenic
TCAAATTCAGCATCAACATT+AGG 0.452348 4.1:-3004773 None:intergenic
CCAATAAACATAACAATGGC+TGG 0.453467 4.1:-3004659 None:intergenic
AGTTGTTTCCAGTCAGTTGT+TGG 0.455532 4.1:-3004910 None:intergenic
TTGGCTCTTGGGTTTGGTGA+TGG 0.456861 4.1:+3005350 MS.gene049091:CDS
AATGGAACCAACAACAATAC+TGG 0.458027 4.1:-3004265 None:intergenic
ATCTTCTCTTCGAGAACCAT+TGG 0.465257 4.1:+3005693 MS.gene049091:CDS
ATGGGGACCCTTAGGATGGT+TGG 0.470449 4.1:+3005448 MS.gene049091:CDS
GTGATGGTGGAAATCTCAAA+AGG 0.475636 4.1:+3003748 MS.gene049091:CDS
GGTGGAGGATTTGGTGATGG+TGG 0.478295 4.1:+3003735 MS.gene049091:CDS
CAAATCCAAGAGTTTGGAAA+AGG 0.479549 4.1:-3004955 None:intergenic
AGAAGATAAATCTCTTCAAT+GGG 0.487469 4.1:-3005677 None:intergenic
TGGGGATGGAGATTATCTCT+TGG 0.491578 4.1:+3004623 MS.gene049091:CDS
GATGGCAAACAATTGTCATT+TGG 0.493677 4.1:+3005368 MS.gene049091:CDS
AGGAGAGCCAGTATTGTTGT+TGG 0.495148 4.1:+3004258 MS.gene049091:CDS
CAAAATGGAAGAGGCAAGAA+AGG 0.497536 4.1:+3004727 MS.gene049091:CDS
ACTTGGAACCAACCATCCTA+AGG 0.498385 4.1:-3005456 None:intergenic
GGTCGTATCCTTCTTGGCGT+TGG 0.503190 4.1:+3004348 MS.gene049091:CDS
AGCTCCAATGAAGAAGCTAA+TGG 0.508387 4.1:-3004283 None:intergenic
TCTAATGGGAAAAGCTCACT+TGG 0.515398 4.1:-3005473 None:intergenic
CGACCGAGCAAATTCATCCA+TGG 0.518915 4.1:+3004603 MS.gene049091:CDS
AGCAAATTCATCCATGGGGA+TGG 0.524714 4.1:+3004609 MS.gene049091:CDS
GACCGAGCAAATTCATCCAT+GGG 0.526464 4.1:+3004604 MS.gene049091:CDS
TGAGAGGAAACATGCACACT+TGG 0.539485 4.1:+3004119 MS.gene049091:CDS
TGGAAGAGATATGTAACAGA+TGG 0.539887 4.1:+3005719 MS.gene049091:CDS
GCAGGTGGAGGATTTGGTGA+TGG 0.542926 4.1:+3003732 MS.gene049091:CDS
TCCCCATGGATGAATTTGCT+CGG 0.552523 4.1:-3004606 None:intergenic
CCAAGAGTTTGGAAAAGGAC+AGG 0.554540 4.1:-3004950 None:intergenic
CCTGCATTCCAACAACTGAC+TGG 0.555304 4.1:+3004902 MS.gene049091:CDS
TGCTGAAATGTTCTTGTGCA+TGG 0.555889 4.1:+3005096 MS.gene049091:CDS
GTTGGGATTTGGAAGATCAT+GGG 0.557591 4.1:+3005430 MS.gene049091:CDS
TTTATGTTGACAAGTTTGGT+AGG 0.561260 4.1:+3005050 MS.gene049091:CDS
CATATCTCTTCCAAAACCAA+TGG 0.563898 4.1:-3005709 None:intergenic
ATCCAATTCCAACGCCAAGA+AGG 0.564783 4.1:-3004356 None:intergenic
CCAAACAGTCTTGTGGAACA+AGG 0.569116 4.1:+3004704 MS.gene049091:CDS
AATGCACCAATTACAAATTG+TGG 0.579575 4.1:-3004872 None:intergenic
GGAACAAGGCAAAATGGAAG+AGG 0.584145 4.1:+3004718 MS.gene049091:CDS
AAGGAAGAATTGTGCAACAA+TGG 0.584788 4.1:-3005549 None:intergenic
TCTTCCCAAATGTGTATGAG+AGG 0.590383 4.1:+3004103 MS.gene049091:CDS
GACAGGTGCATAGAAGAGGA+TGG 0.591217 4.1:-3004933 None:intergenic
AGAAGATTCCATATTTAAGG+TGG 0.599343 4.1:-3005583 None:intergenic
TGGAATTGGATTTGGTAACC+AGG 0.602717 4.1:+3004368 MS.gene049091:CDS
GATCATGGGGACCCTTAGGA+TGG 0.603621 4.1:+3005444 MS.gene049091:CDS
AAAGGACAGGTGCATAGAAG+AGG 0.607711 4.1:-3004937 None:intergenic
TGATGGTGGAAATCTCAAAA+GGG 0.610629 4.1:+3003749 MS.gene049091:CDS
GGCAGCAAAGTATAGAGATG+AGG 0.611582 4.1:-3004190 None:intergenic
ACCACCAATAAACATAACAA+TGG 0.611653 4.1:-3004663 None:intergenic
TGAGACACCAAACAGTCTTG+TGG 0.611935 4.1:+3004697 MS.gene049091:CDS
TTGGGATTTGGAAGATCATG+GGG 0.614895 4.1:+3005431 MS.gene049091:CDS
AAGTTGTTAGTTGAAAGAGT+TGG 0.626985 4.1:-3004544 None:intergenic
CTTGGAACCAACCATCCTAA+GGG 0.630263 4.1:-3005455 None:intergenic
TTTATGAATACAAGATTACA+GGG 0.630488 4.1:+3003778 MS.gene049091:CDS
AGAGATAATCTCCATCCCCA+TGG 0.639595 4.1:-3004620 None:intergenic
ATGTCTCCTGCAAAAGTGAG+AGG 0.640100 4.1:+3004512 MS.gene049091:CDS
TAAGGTGGCAGAGTGATACA+AGG 0.640798 4.1:-3005568 None:intergenic
ATAAAACATTGAGATCAAAG+TGG 0.656717 4.1:-3005032 None:intergenic
ATCAGCTGCACAAAGTGTTG+TGG 0.674434 4.1:+3005502 MS.gene049091:CDS
ACCGAGCAAATTCATCCATG+GGG 0.697187 4.1:+3004605 MS.gene049091:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAAGAAGAAAAAAAAGA+TGG - chr4.1:3005133-3005152 None:intergenic 15.0%
!!! AACATTTATATGTTGATTAT+TGG + chr4.1:3004327-3004346 MS.gene049091:CDS 15.0%
!!! TTTTGAAACATTATTTAAGT+AGG - chr4.1:3005160-3005179 None:intergenic 15.0%
!! AGAAAATCCATATTTGTTTA+AGG - chr4.1:3003982-3004001 None:intergenic 20.0%
!! CTTAAATAATGTTTCAAAAC+TGG + chr4.1:3005161-3005180 MS.gene049091:intron 20.0%
!! TTTATGAATACAAGATTACA+GGG + chr4.1:3003778-3003797 MS.gene049091:CDS 20.0%
!!! ACTTCTTGTTGTTATTATTT+AGG + chr4.1:3004466-3004485 MS.gene049091:intron 20.0%
!!! GGTTGAAATATATTTTTTCA+AGG + chr4.1:3005255-3005274 MS.gene049091:intron 20.0%
!!! GTTATGTTTGGTAATTTATT+AGG - chr4.1:3003928-3003947 None:intergenic 20.0%
!!! TGAAATATATTTTTTCAAGG+CGG + chr4.1:3005258-3005277 MS.gene049091:intron 20.0%
! AAACATAACATACCAATGTT+TGG + chr4.1:3003939-3003958 MS.gene049091:intron 25.0%
! AAACATTGGTATGTTATGTT+TGG - chr4.1:3003940-3003959 None:intergenic 25.0%
! AATAGACCACAATTTGTAAT+TGG + chr4.1:3004866-3004885 MS.gene049091:CDS 25.0%
! AATTAATTGATTATCCTTGC+AGG + chr4.1:3004045-3004064 MS.gene049091:intron 25.0%
! AGAAGATAAATCTCTTCAAT+GGG - chr4.1:3005680-3005699 None:intergenic 25.0%
! AGGATAATCAATTAATTGTC+AGG - chr4.1:3004042-3004061 None:intergenic 25.0%
! ATAAAACATTGAGATCAAAG+TGG - chr4.1:3005035-3005054 None:intergenic 25.0%
! CTTTATGAATACAAGATTAC+AGG + chr4.1:3003777-3003796 MS.gene049091:CDS 25.0%
! GGATAATCAATTAATTGTCA+GGG - chr4.1:3004041-3004060 None:intergenic 25.0%
! GTAAGAAGATTCCATATTTA+AGG - chr4.1:3005589-3005608 None:intergenic 25.0%
! GTCTTCACTCAAATTTAATT+GGG - chr4.1:3004008-3004027 None:intergenic 25.0%
! TTTCATATTCTTTCTATTGC+CGG + chr4.1:3005640-3005659 MS.gene049091:CDS 25.0%
!! ATGTTTTATGTTGACAAGTT+TGG + chr4.1:3005046-3005065 MS.gene049091:CDS 25.0%
!! TTTCAACTAACAACTTGTTT+GGG + chr4.1:3004551-3004570 MS.gene049091:CDS 25.0%
!!! GAAATATATTTTTTCAAGGC+GGG + chr4.1:3005259-3005278 MS.gene049091:intron 25.0%
AAGTTGTTAGTTGAAAGAGT+TGG - chr4.1:3004547-3004566 None:intergenic 30.0%
AATGCACCAATTACAAATTG+TGG - chr4.1:3004875-3004894 None:intergenic 30.0%
ACAATTTGTAATTGGTGCAT+TGG + chr4.1:3004874-3004893 MS.gene049091:CDS 30.0%
ACCACCAATAAACATAACAA+TGG - chr4.1:3004666-3004685 None:intergenic 30.0%
AGAAGATTCCATATTTAAGG+TGG - chr4.1:3005586-3005605 None:intergenic 30.0%
AGACATTTCTGACAGATATA+AGG - chr4.1:3004498-3004517 None:intergenic 30.0%
CCATAACAAAAAACAAAGGT+AGG + chr4.1:3004238-3004257 MS.gene049091:CDS 30.0%
GACATTTCTGACAGATATAA+GGG - chr4.1:3004497-3004516 None:intergenic 30.0%
GAGAAGATAAATCTCTTCAA+TGG - chr4.1:3005681-3005700 None:intergenic 30.0%
GGTCTTCACTCAAATTTAAT+TGG - chr4.1:3004009-3004028 None:intergenic 30.0%
GTCTATTCTTTCTCAAAAGA+AGG - chr4.1:3004853-3004872 None:intergenic 30.0%
TAATTGTCAGGGACTAATTT+AGG - chr4.1:3004030-3004049 None:intergenic 30.0%
TCAAATTCAGCATCAACATT+AGG - chr4.1:3004776-3004795 None:intergenic 30.0%
TCCTCCATAACAAAAAACAA+AGG + chr4.1:3004234-3004253 MS.gene049091:CDS 30.0%
TTTATGTTGACAAGTTTGGT+AGG + chr4.1:3005050-3005069 MS.gene049091:CDS 30.0%
! CTTTCAACTAACAACTTGTT+TGG + chr4.1:3004550-3004569 MS.gene049091:CDS 30.0%
! TTCATCTTTTCTTGCATTGT+TGG + chr4.1:3003804-3003823 MS.gene049091:CDS 30.0%
!! AACAACTTGTTTGGGAATTT+TGG + chr4.1:3004559-3004578 MS.gene049091:CDS 30.0%
!! AATGTTTGGTGTAAGAAACT+CGG + chr4.1:3003953-3003972 MS.gene049091:intron 30.0%
!!! ACCTTTGTTTTTTGTTATGG+AGG - chr4.1:3004238-3004257 None:intergenic 30.0%
!!! ATTTGGTGTTAGTGTCTTTT+TGG + chr4.1:3005385-3005404 MS.gene049091:CDS 30.0%
!!! CCTACCTTTGTTTTTTGTTA+TGG - chr4.1:3004241-3004260 None:intergenic 30.0%
AAGGAAGAATTGTGCAACAA+TGG - chr4.1:3005552-3005571 None:intergenic 35.0%
AATGGAACCAACAACAATAC+TGG - chr4.1:3004268-3004287 None:intergenic 35.0%
ATTATTGGTCGTATCCTTCT+TGG + chr4.1:3004342-3004361 MS.gene049091:CDS 35.0%
CAAATCCAAGAGTTTGGAAA+AGG - chr4.1:3004958-3004977 None:intergenic 35.0%
CAGCTGATCTTATCTCTAAT+GGG - chr4.1:3005490-3005509 None:intergenic 35.0%
CATATCTCTTCCAAAACCAA+TGG - chr4.1:3005712-3005731 None:intergenic 35.0%
CCAATAAACATAACAATGGC+TGG - chr4.1:3004662-3004681 None:intergenic 35.0%
CCAGCCATTGTTATGTTTAT+TGG + chr4.1:3004659-3004678 MS.gene049091:CDS 35.0%
CCTAGAATCAATTAGTTCAC+CGG + chr4.1:3005203-3005222 MS.gene049091:intron 35.0%
GAGTTTCTTACACCAAACAT+TGG - chr4.1:3003954-3003973 None:intergenic 35.0%
GATGGCAAACAATTGTCATT+TGG + chr4.1:3005368-3005387 MS.gene049091:CDS 35.0%
GCCATTGTTATGTTTATTGG+TGG + chr4.1:3004662-3004681 MS.gene049091:CDS 35.0%
GTTTCCTCTCATACACATTT+GGG - chr4.1:3004110-3004129 None:intergenic 35.0%
TAATTGATTATCCTTGCAGG+TGG + chr4.1:3004048-3004067 MS.gene049091:intron 35.0%
TCGGACACCTTAAACAAATA+TGG + chr4.1:3003972-3003991 MS.gene049091:intron 35.0%
TCTCTCTTTGGATATGATCT+TGG + chr4.1:3003840-3003859 MS.gene049091:CDS 35.0%
TGGAAGAGATATGTAACAGA+TGG + chr4.1:3005719-3005738 MS.gene049091:CDS 35.0%
TGTTTCCTCTCATACACATT+TGG - chr4.1:3004111-3004130 None:intergenic 35.0%
! AATTGATTCTAGGTCGAACT+TGG - chr4.1:3005196-3005215 None:intergenic 35.0%
! CTTTTCCAAACTCTTGGATT+TGG + chr4.1:3004956-3004975 MS.gene049091:CDS 35.0%
! GTGATTTTCCTGTTTGTGTT+GGG + chr4.1:3005413-3005432 MS.gene049091:CDS 35.0%
! TGTGATTTTCCTGTTTGTGT+TGG + chr4.1:3005412-3005431 MS.gene049091:CDS 35.0%
! TTTGAAGCATTCAAGTTACC+TGG - chr4.1:3004389-3004408 None:intergenic 35.0%
!! CTCAAAAGAAGGTTCTGAAA+TGG - chr4.1:3004842-3004861 None:intergenic 35.0%
!! GTTCTGAAATGGATTCTTGA+TGG - chr4.1:3004831-3004850 None:intergenic 35.0%
!! TGATGGTGGAAATCTCAAAA+GGG + chr4.1:3003749-3003768 MS.gene049091:CDS 35.0%
!!! ATGAGACCATTTTGATTTGC+AGG + chr4.1:3005310-3005329 MS.gene049091:intron 35.0%
!!! GGAATCTTCTTACTTTTTGC+TGG + chr4.1:3005596-3005615 MS.gene049091:CDS 35.0%
AACCAGACTCCAATGTAATC+GGG - chr4.1:3005239-3005258 None:intergenic 40.0%
AGCTCCAATGAAGAAGCTAA+TGG - chr4.1:3004286-3004305 None:intergenic 40.0%
ATCTTCTCTTCGAGAACCAT+TGG + chr4.1:3005693-3005712 MS.gene049091:CDS 40.0%
CAAAATGGAAGAGGCAAGAA+AGG + chr4.1:3004727-3004746 MS.gene049091:CDS 40.0%
CAACCAGACTCCAATGTAAT+CGG - chr4.1:3005240-3005259 None:intergenic 40.0%
CAGATCCAAATCCAAGAGTT+TGG - chr4.1:3004964-3004983 None:intergenic 40.0%
CAGCTACCTGCAAATCAAAA+TGG - chr4.1:3005319-3005338 None:intergenic 40.0%
CGCGAAAAATGTGGAAATCA+AGG - chr4.1:3004214-3004233 None:intergenic 40.0%
GAATCAATTAGTTCACCGGT+TGG + chr4.1:3005207-3005226 MS.gene049091:intron 40.0%
GCAGCTGATCTTATCTCTAA+TGG - chr4.1:3005491-3005510 None:intergenic 40.0%
GTTGGGATTTGGAAGATCAT+GGG + chr4.1:3005430-3005449 MS.gene049091:CDS 40.0%
TCACTCTGCCACCTTAAATA+TGG + chr4.1:3005575-3005594 MS.gene049091:CDS 40.0%
TCTAATGGGAAAAGCTCACT+TGG - chr4.1:3005476-3005495 None:intergenic 40.0%
TCTTCCCAAATGTGTATGAG+AGG + chr4.1:3004103-3004122 MS.gene049091:CDS 40.0%
TCTTGTGGAACAAGGCAAAA+TGG + chr4.1:3004712-3004731 MS.gene049091:CDS 40.0%
TGCTGAAATGTTCTTGTGCA+TGG + chr4.1:3005096-3005115 MS.gene049091:CDS 40.0%
TGGTTTGATCCCGATTACAT+TGG + chr4.1:3005227-3005246 MS.gene049091:intron 40.0%
TGTTGAGAGAAGCAGCATTT+AGG - chr4.1:3004311-3004330 None:intergenic 40.0%
TGTTGGGATTTGGAAGATCA+TGG + chr4.1:3005429-3005448 MS.gene049091:CDS 40.0%
TTCCAAATCCCAACACAAAC+AGG - chr4.1:3005424-3005443 None:intergenic 40.0%
TTCCTGTTTGTGTTGGGATT+TGG + chr4.1:3005419-3005438 MS.gene049091:CDS 40.0%
TTGGGATTTGGAAGATCATG+GGG + chr4.1:3005431-3005450 MS.gene049091:CDS 40.0%
! AGTTGTTTCCAGTCAGTTGT+TGG - chr4.1:3004913-3004932 None:intergenic 40.0%
! CCGGTGAACTAATTGATTCT+AGG - chr4.1:3005206-3005225 None:intergenic 40.0%
! GGTTCCATTAGCTTCTTCAT+TGG + chr4.1:3004279-3004298 MS.gene049091:CDS 40.0%
! TGGAATTGGATTTGGTAACC+AGG + chr4.1:3004368-3004387 MS.gene049091:CDS 40.0%
! TGGTAGGAGAGCTTTCTTTT+TGG + chr4.1:3005066-3005085 MS.gene049091:CDS 40.0%
!! AGAGCTTTCTTTTTGGAAGC+TGG + chr4.1:3005073-3005092 MS.gene049091:CDS 40.0%
!! ATGGGAACTTGCTTTGTTTC+CGG - chr4.1:3005662-3005681 None:intergenic 40.0%
!! GGATATGATCTTGGTGTTTC+AGG + chr4.1:3003849-3003868 MS.gene049091:CDS 40.0%
!! GGGAATTTTGGTAGCTAACT+TGG + chr4.1:3004571-3004590 MS.gene049091:CDS 40.0%
!! GTGATGGTGGAAATCTCAAA+AGG + chr4.1:3003748-3003767 MS.gene049091:CDS 40.0%
!!! AAGGTTTTGGAGAGAGTTAG+AGG + chr4.1:3004746-3004765 MS.gene049091:CDS 40.0%
!!! ATTGTTTTGGCTCTTGGGTT+TGG + chr4.1:3005344-3005363 MS.gene049091:CDS 40.0%
!!! CAGCAATTGTTTTGGCTCTT+GGG + chr4.1:3005339-3005358 MS.gene049091:CDS 40.0%
!!! TCTTCGAGAACCATTGGTTT+TGG + chr4.1:3005699-3005718 MS.gene049091:CDS 40.0%
AAAGGACAGGTGCATAGAAG+AGG - chr4.1:3004940-3004959 None:intergenic 45.0%
ACCGAGCAAATTCATCCATG+GGG + chr4.1:3004605-3004624 MS.gene049091:CDS 45.0%
ACTTGGAACCAACCATCCTA+AGG - chr4.1:3005459-3005478 None:intergenic 45.0%
AGAGATAATCTCCATCCCCA+TGG - chr4.1:3004623-3004642 None:intergenic 45.0%
AGCAAATTCATCCATGGGGA+TGG + chr4.1:3004609-3004628 MS.gene049091:CDS 45.0%
AGGAGAGCCAGTATTGTTGT+TGG + chr4.1:3004258-3004277 MS.gene049091:CDS 45.0%
ATCCAATTCCAACGCCAAGA+AGG - chr4.1:3004359-3004378 None:intergenic 45.0%
ATCCCGATTACATTGGAGTC+TGG + chr4.1:3005234-3005253 MS.gene049091:intron 45.0%
ATGTCTCCTGCAAAAGTGAG+AGG + chr4.1:3004512-3004531 MS.gene049091:CDS 45.0%
CCAAGAGTTTGGAAAAGGAC+AGG - chr4.1:3004953-3004972 None:intergenic 45.0%
CCTTGTTCCACAAGACTGTT+TGG - chr4.1:3004707-3004726 None:intergenic 45.0%
CTTGGAACCAACCATCCTAA+GGG - chr4.1:3005458-3005477 None:intergenic 45.0%
GACCGAGCAAATTCATCCAT+GGG + chr4.1:3004604-3004623 MS.gene049091:CDS 45.0%
GGAACAAGGCAAAATGGAAG+AGG + chr4.1:3004718-3004737 MS.gene049091:CDS 45.0%
GGCAGCAAAGTATAGAGATG+AGG - chr4.1:3004193-3004212 None:intergenic 45.0%
GTAATCGGGATCAAACCAAC+CGG - chr4.1:3005225-3005244 None:intergenic 45.0%
TAAGGTGGCAGAGTGATACA+AGG - chr4.1:3005571-3005590 None:intergenic 45.0%
TAGAAGTAACTCCACCTGCA+AGG - chr4.1:3004062-3004081 None:intergenic 45.0%
TATGGAGGACGCGAAAAATG+TGG - chr4.1:3004223-3004242 None:intergenic 45.0%
TGAGACACCAAACAGTCTTG+TGG + chr4.1:3004697-3004716 MS.gene049091:CDS 45.0%
TGAGAGGAAACATGCACACT+TGG + chr4.1:3004119-3004138 MS.gene049091:CDS 45.0%
TGCAGGTGGAGTTACTTCTA+TGG + chr4.1:3004062-3004081 MS.gene049091:intron 45.0%
TGGGGATGGAGATTATCTCT+TGG + chr4.1:3004623-3004642 MS.gene049091:CDS 45.0%
! ATCCTTCTTGGCGTTGGAAT+TGG + chr4.1:3004354-3004373 MS.gene049091:CDS 45.0%
! CCAAACAGTCTTGTGGAACA+AGG + chr4.1:3004704-3004723 MS.gene049091:CDS 45.0%
! CCTGTCCTTTTCCAAACTCT+TGG + chr4.1:3004950-3004969 MS.gene049091:CDS 45.0%
! CTAGGTCGAACTTGGTAGTT+CGG - chr4.1:3005188-3005207 None:intergenic 45.0%
! CTTGGCGTTGGAATTGGATT+TGG + chr4.1:3004360-3004379 MS.gene049091:CDS 45.0%
! GGAAGAGGCAAGAAAGGTTT+TGG + chr4.1:3004733-3004752 MS.gene049091:CDS 45.0%
! GGTAGCTGCAGCAATTGTTT+TGG + chr4.1:3005331-3005350 MS.gene049091:intron 45.0%
! TCCCCATGGATGAATTTGCT+CGG - chr4.1:3004609-3004628 None:intergenic 45.0%
! TCTTGCATTGTTGGTGCTCT+TGG + chr4.1:3003813-3003832 MS.gene049091:CDS 45.0%
!! ACAAGACTGTTTGGTGTCTC+AGG - chr4.1:3004698-3004717 None:intergenic 45.0%
!! ATCAGCTGCACAAAGTGTTG+TGG + chr4.1:3005502-3005521 MS.gene049091:CDS 45.0%
!!! GCAGCAATTGTTTTGGCTCT+TGG + chr4.1:3005338-3005357 MS.gene049091:CDS 45.0%
CCAGTCAGTTGTTGGAATGC+AGG - chr4.1:3004905-3004924 None:intergenic 50.0%
CCTGCATTCCAACAACTGAC+TGG + chr4.1:3004902-3004921 MS.gene049091:CDS 50.0%
CGACCGAGCAAATTCATCCA+TGG + chr4.1:3004603-3004622 MS.gene049091:CDS 50.0%
GACAGGTGCATAGAAGAGGA+TGG - chr4.1:3004936-3004955 None:intergenic 50.0%
! TGCATTGTTGGTGCTCTTGG+TGG + chr4.1:3003816-3003835 MS.gene049091:CDS 50.0%
!! ACTGCTCCTCTCACTTTTGC+AGG - chr4.1:3004521-3004540 None:intergenic 50.0%
!! TTGGCTCTTGGGTTTGGTGA+TGG + chr4.1:3005350-3005369 MS.gene049091:CDS 50.0%
ATGGGGACCCTTAGGATGGT+TGG + chr4.1:3005448-3005467 MS.gene049091:CDS 55.0%
GATCATGGGGACCCTTAGGA+TGG + chr4.1:3005444-3005463 MS.gene049091:CDS 55.0%
GGAAGATCATGGGGACCCTT+AGG + chr4.1:3005440-3005459 MS.gene049091:CDS 55.0%
GGTCGTATCCTTCTTGGCGT+TGG + chr4.1:3004348-3004367 MS.gene049091:CDS 55.0%
! GCTCTTGGTGGCTCTCTCTT+TGG + chr4.1:3003828-3003847 MS.gene049091:CDS 55.0%
!! GCAGGTGGAGGATTTGGTGA+TGG + chr4.1:3003732-3003751 MS.gene049091:CDS 55.0%
!! GGTGGAGGATTTGGTGATGG+TGG + chr4.1:3003735-3003754 MS.gene049091:CDS 55.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 3003729 3005775 3003729 ID=MS.gene049091
chr4.1 mRNA 3003729 3005775 3003729 ID=MS.gene049091.t1;Parent=MS.gene049091
chr4.1 exon 3003729 3003870 3003729 ID=MS.gene049091.t1.exon1;Parent=MS.gene049091.t1
chr4.1 CDS 3003729 3003870 3003729 ID=cds.MS.gene049091.t1;Parent=MS.gene049091.t1
chr4.1 exon 3004067 3004389 3004067 ID=MS.gene049091.t1.exon2;Parent=MS.gene049091.t1
chr4.1 CDS 3004067 3004389 3004067 ID=cds.MS.gene049091.t1;Parent=MS.gene049091.t1
chr4.1 exon 3004488 3005117 3004488 ID=MS.gene049091.t1.exon3;Parent=MS.gene049091.t1
chr4.1 CDS 3004488 3005117 3004488 ID=cds.MS.gene049091.t1;Parent=MS.gene049091.t1
chr4.1 exon 3005332 3005775 3005332 ID=MS.gene049091.t1.exon4;Parent=MS.gene049091.t1
chr4.1 CDS 3005332 3005775 3005332 ID=cds.MS.gene049091.t1;Parent=MS.gene049091.t1
Gene Sequence

>MS.gene049091

ATGGCAGGTGGAGGATTTGGTGATGGTGGAAATCTCAAAAGGGCTCATCTTTATGAATACAAGATTACAGGGTACTTCATCTTTTCTTGCATTGTTGGTGCTCTTGGTGGCTCTCTCTTTGGATATGATCTTGGTGTTTCAGGTGAGAGTGAATGTTTTATCAATTGTCAATTCTCACATTGTCATATAAATATTACCTAATAAATTACCAAACATAACATACCAATGTTTGGTGTAAGAAACTCGGACACCTTAAACAAATATGGATTTTCTCGTCCCAATTAAATTTGAGTGAAGACCTAAATTAGTCCCTGACAATTAATTGATTATCCTTGCAGGTGGAGTTACTTCTATGGATGATTTCTTGAAAGAATTCTTCCCAAATGTGTATGAGAGGAAACATGCACACTTGGCAGAAACAGATTATTGTAAATATGATGATCAAATGTTGACACTTTTCACCTCATCTCTATACTTTGCTGCCTTGATTTCCACATTTTTCGCGTCCTCCATAACAAAAAACAAAGGTAGGAGAGCCAGTATTGTTGTTGGTTCCATTAGCTTCTTCATTGGAGCTGTCCTAAATGCTGCTTCTCTCAACATTTATATGTTGATTATTGGTCGTATCCTTCTTGGCGTTGGAATTGGATTTGGTAACCAGGTAACTTGAATGCTTCAAAATGATAAATAATGAGTTTATGTCAATACACACACACACACGTGTGTGTTATAAACTAACTTCTTGTTGTTATTATTTAGGCTGTTCCCTTATATCTGTCAGAAATGTCTCCTGCAAAAGTGAGAGGAGCAGTGAACCAACTCTTTCAACTAACAACTTGTTTGGGAATTTTGGTAGCTAACTTGGTAAATTATGCGACCGAGCAAATTCATCCATGGGGATGGAGATTATCTCTTGGTTTAGCAGTAGTTCCAGCCATTGTTATGTTTATTGGTGGTTTGTTGTGTCCTGAGACACCAAACAGTCTTGTGGAACAAGGCAAAATGGAAGAGGCAAGAAAGGTTTTGGAGAGAGTTAGAGGTACGCCTAATGTTGATGCTGAATTTGAAGATCTTGTTGAAGCAAGCAGAGAAGCACAAGCCATCAAGAATCCATTTCAGAACCTTCTTTTGAGAAAGAATAGACCACAATTTGTAATTGGTGCATTGGCTATTCCTGCATTCCAACAACTGACTGGAAACAACTCCATCCTCTTCTATGCACCTGTCCTTTTCCAAACTCTTGGATTTGGATCTGCTGCATCTCTTTATTCTTCTGTCATCACTAGTATTGCACTTGTTCTTGCCACTTTGATCTCAATGTTTTATGTTGACAAGTTTGGTAGGAGAGCTTTCTTTTTGGAAGCTGGTGCTGAAATGTTCTTGTGCATGGTAAGTACTACACCATCTTTTTTTTCTTCTTAATTTTCACCTACTTAAATAATGTTTCAAAACTGGACCGAACTACCAAGTTCGACCTAGAATCAATTAGTTCACCGGTTGGTTTGATCCCGATTACATTGGAGTCTGGTTGAAATATATTTTTTCAAGGCGGGTCGATTTAACTGATTTTAATGCTAATATATGAGACCATTTTGATTTGCAGGTAGCTGCAGCAATTGTTTTGGCTCTTGGGTTTGGTGATGGCAAACAATTGTCATTTGGTGTTAGTGTCTTTTTGGTTATTGTGATTTTCCTGTTTGTGTTGGGATTTGGAAGATCATGGGGACCCTTAGGATGGTTGGTTCCAAGTGAGCTTTTCCCATTAGAGATAAGATCAGCTGCACAAAGTGTTGTGGTGTGTGTTAACATGATCTTCACTGCCATTGTTGCACAATTCTTCCTTGTATCACTCTGCCACCTTAAATATGGAATCTTCTTACTTTTTGCTGGCTTGATTCTCGTCATGAGTCTTTTCATATTCTTTCTATTGCCGGAAACAAAGCAAGTTCCCATTGAAGAGATTTATCTTCTCTTCGAGAACCATTGGTTTTGGAAGAGATATGTAACAGATGGAAATCAAGAGAGAGCATCAAATGAACATGCATAA
Protein sequence

>MS.gene049091.t1

MAGGGFGDGGNLKRAHLYEYKITGYFIFSCIVGALGGSLFGYDLGVSGGVTSMDDFLKEFFPNVYERKHAHLAETDYCKYDDQMLTLFTSSLYFAALISTFFASSITKNKGRRASIVVGSISFFIGAVLNAASLNIYMLIIGRILLGVGIGFGNQAVPLYLSEMSPAKVRGAVNQLFQLTTCLGILVANLVNYATEQIHPWGWRLSLGLAVVPAIVMFIGGLLCPETPNSLVEQGKMEEARKVLERVRGTPNVDAEFEDLVEASREAQAIKNPFQNLLLRKNRPQFVIGALAIPAFQQLTGNNSILFYAPVLFQTLGFGSAASLYSSVITSIALVLATLISMFYVDKFGRRAFFLEAGAEMFLCMVAAAIVLALGFGDGKQLSFGVSVFLVIVIFLFVLGFGRSWGPLGWLVPSELFPLEIRSAAQSVVVCVNMIFTAIVAQFFLVSLCHLKYGIFLLFAGLILVMSLFIFFLLPETKQVPIEEIYLLFENHWFWKRYVTDGNQERASNEHA