Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049143.t1 | XP_013447342.1 | 97.7 | 838 | 19 | 0 | 1 | 838 | 372 | 1209 | 0.00E+00 | 1608.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049143.t1 | Q8RXA7 | 69.3 | 844 | 226 | 8 | 1 | 838 | 371 | 1187 | 0.0e+00 | 1138.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049143.t1 | A0A072U6C6 | 97.7 | 838 | 19 | 0 | 1 | 838 | 92 | 929 | 0.0e+00 | 1608.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049143 | MS.gene052609 | 0.803662 | 3.13E-49 | -1.69E-46 |
| MS.gene049143 | MS.gene05938 | 0.804016 | 2.64E-49 | -1.69E-46 |
| MS.gene049143 | MS.gene06134 | 0.826362 | 2.83E-54 | -1.69E-46 |
| MS.gene049143 | MS.gene072905 | 0.81304 | 3.13E-51 | -1.69E-46 |
| MS.gene049143 | MS.gene21416 | 0.813757 | 2.18E-51 | -1.69E-46 |
| MS.gene049143 | MS.gene24076 | 0.801183 | 1.02E-48 | -1.69E-46 |
| MS.gene049143 | MS.gene28924 | 0.808554 | 2.93E-50 | -1.69E-46 |
| MS.gene049143 | MS.gene32620 | 0.813571 | 2.39E-51 | -1.69E-46 |
| MS.gene049143 | MS.gene36285 | 0.811288 | 7.55E-51 | -1.69E-46 |
| MS.gene049143 | MS.gene41692 | 0.812136 | 4.94E-51 | -1.69E-46 |
| MS.gene049143 | MS.gene46302 | 0.819104 | 1.38E-52 | -1.69E-46 |
| MS.gene049143 | MS.gene63504 | 0.818349 | 2.05E-52 | -1.69E-46 |
| MS.gene049143 | MS.gene67231 | 0.809093 | 2.24E-50 | -1.69E-46 |
| MS.gene049143 | MS.gene68106 | 0.800958 | 1.13E-48 | -1.69E-46 |
| MS.gene049143 | MS.gene68420 | 0.812822 | 3.49E-51 | -1.69E-46 |
| MS.gene049143 | MS.gene74235 | 0.823816 | 1.13E-53 | -1.69E-46 |
| MS.gene049143 | MS.gene89100 | 0.824002 | 1.02E-53 | -1.69E-46 |
| MS.gene049143 | MS.gene90121 | 0.81784 | 2.68E-52 | -1.69E-46 |
| MS.gene049143 | MS.gene90778 | 0.810613 | 1.06E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 206 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCGATGGCCTGCTGCGATTT+TGG | 0.058693 | 4.4:+2742618 | MS.gene049143:CDS |
| TTCTGGTGACACAGGGTTTA+TGG | 0.130554 | 4.4:+2736104 | MS.gene049143:intron |
| GAACTCAGGGCAACTTTAAA+AGG | 0.147227 | 4.4:+2741479 | MS.gene049143:CDS |
| GTGGATTTGTTGAATGTATA+AGG | 0.172980 | 4.4:+2736362 | MS.gene049143:CDS |
| CCTTGACTCCCATGGTTTCT+TGG | 0.193247 | 4.4:+2734416 | MS.gene049143:CDS |
| GTAATGGGCTTCTAAGACTA+TGG | 0.209740 | 4.4:+2743906 | MS.gene049143:CDS |
| CATTTAGTCGTGTTCGTAAA+TGG | 0.219994 | 4.4:+2741028 | MS.gene049143:CDS |
| ATGGCTGCGGCTTCTTAAAT+TGG | 0.256344 | 4.4:+2736123 | MS.gene049143:CDS |
| ATCTTATTTCTCTATCGATT+TGG | 0.256572 | 4.4:+2738397 | MS.gene049143:CDS |
| AAAATGTTGCAAAGAACTTT+AGG | 0.257638 | 4.4:-2733387 | None:intergenic |
| AACAACTACGCAATGGATAC+TGG | 0.259483 | 4.4:+2740842 | MS.gene049143:CDS |
| AAATCTATCATAAGTATATT+TGG | 0.270131 | 4.4:-2734703 | None:intergenic |
| CCTCTCTCATCCTTTGAATA+TGG | 0.272376 | 4.4:+2736160 | MS.gene049143:CDS |
| GCTTATGGTGCTGGACATTA+AGG | 0.275054 | 4.4:+2735933 | MS.gene049143:CDS |
| TCTTATTTCTCTATCGATTT+GGG | 0.288695 | 4.4:+2738398 | MS.gene049143:CDS |
| AGGCAGATGCATAAACTTTC+AGG | 0.303131 | 4.4:+2742170 | MS.gene049143:CDS |
| CCATGGTTTCTTGGACTACT+TGG | 0.320400 | 4.4:+2734425 | MS.gene049143:CDS |
| ATCGGATGATCAGTCTGTTT+TGG | 0.322735 | 4.4:+2741654 | MS.gene049143:CDS |
| GAATTAACTTACAAATTGTT+TGG | 0.332137 | 4.4:-2739581 | None:intergenic |
| TGGTTGCTGATCCTCATCTT+TGG | 0.333904 | 4.4:-2740932 | None:intergenic |
| TCAGGCTGAAAGGGAGCTTA+TGG | 0.336486 | 4.4:+2735918 | MS.gene049143:intron |
| CAAACATGCAGGTTAAGATA+TGG | 0.340095 | 4.4:+2741435 | MS.gene049143:intron |
| ATGATTGGACGGCAAGAATA+TGG | 0.347164 | 4.4:+2742365 | MS.gene049143:CDS |
| TTAAATGTGCAGGAGGTATA+AGG | 0.354938 | 4.4:+2743002 | MS.gene049143:intron |
| GATTCTGCTGTAGGAATATC+AGG | 0.356743 | 4.4:+2734579 | MS.gene049143:CDS |
| AACTAATGTCCGCATGCTTA+GGG | 0.357184 | 4.4:+2741233 | MS.gene049143:CDS |
| CCCGGCATTGATAGATAATA+TGG | 0.362546 | 4.4:-2743056 | None:intergenic |
| GAATATTCAACACATAATAT+TGG | 0.365429 | 4.4:-2742436 | None:intergenic |
| AAACTAATGTCCGCATGCTT+AGG | 0.368785 | 4.4:+2741232 | MS.gene049143:CDS |
| AAAGAGAGAAGTGTGGGATT+TGG | 0.372891 | 4.4:+2741293 | MS.gene049143:CDS |
| ACGTCTGACGGAGGCAATTC+AGG | 0.373563 | 4.4:+2741051 | MS.gene049143:CDS |
| GACTGCACAGCTTGTTGTGT+TGG | 0.392965 | 4.4:+2739362 | MS.gene049143:CDS |
| CATGGGCTCTGACGGTTGAT+TGG | 0.403172 | 4.4:-2733587 | None:intergenic |
| CGCAAACAAGATTTATCAGC+TGG | 0.405334 | 4.4:+2741192 | MS.gene049143:CDS |
| GTTGGTGACACTGTTATTAC+TGG | 0.406758 | 4.4:+2742337 | MS.gene049143:CDS |
| TCGATCTAGATGTTGTATTT+CGG | 0.407112 | 4.4:-2741002 | None:intergenic |
| GATGCTGGTTTCTTTATTAG+TGG | 0.416930 | 4.4:+2741330 | MS.gene049143:CDS |
| GCGAGGAGTCCCATTCTCAT+TGG | 0.423888 | 4.4:-2741172 | None:intergenic |
| GTGGGAATCTTGGCTGCGGC+TGG | 0.425628 | 4.4:+2742005 | MS.gene049143:CDS |
| AAAACTACCAAGTCTCTCTT+GGG | 0.426074 | 4.4:-2743134 | None:intergenic |
| AGTATCCATTGCGTAGTTGT+TGG | 0.426448 | 4.4:-2740840 | None:intergenic |
| TATGCAGTGGTGGTCGTAAT+GGG | 0.428784 | 4.4:+2743891 | MS.gene049143:CDS |
| GAATCGGATGCAGAGGGAAT+TGG | 0.429904 | 4.4:+2736334 | MS.gene049143:CDS |
| TCTTCGGTTCTGATGTTTGA+AGG | 0.431849 | 4.4:-2734726 | None:intergenic |
| TCTGATACTGTTAAAATCTC+AGG | 0.431939 | 4.4:-2734558 | None:intergenic |
| AAGCTGCCAACCAGCCATCT+TGG | 0.434837 | 4.4:-2743173 | None:intergenic |
| GCAGAGGGAATTGGTGGTAG+TGG | 0.437933 | 4.4:+2736343 | MS.gene049143:CDS |
| TTTGTGATTTCAGGCTGAAA+GGG | 0.439544 | 4.4:+2735909 | MS.gene049143:intron |
| GTCTTCGTGGTTCTGAACTC+AGG | 0.445094 | 4.4:+2741465 | MS.gene049143:CDS |
| GTCCGCCAACTACGCATCTC+TGG | 0.445114 | 4.4:+2739338 | MS.gene049143:CDS |
| TTTGAATATGGAACAATACT+TGG | 0.449545 | 4.4:+2736172 | MS.gene049143:CDS |
| GAATATTCTTCATTAGATAG+AGG | 0.451349 | 4.4:+2742451 | MS.gene049143:CDS |
| TTATTACTGGTAGTGATGAT+TGG | 0.452062 | 4.4:+2742350 | MS.gene049143:CDS |
| AATTCAGGATCAAATATTGA+TGG | 0.459451 | 4.4:-2743936 | None:intergenic |
| TAAAGAAACCAGCATCTTCA+CGG | 0.464303 | 4.4:-2741323 | None:intergenic |
| CAACTTTAAAAGGGCATACA+AGG | 0.465383 | 4.4:+2741489 | MS.gene049143:CDS |
| GCCTTGATTAAGGCTGGGCT+AGG | 0.467430 | 4.4:+2739496 | MS.gene049143:intron |
| CGCATGCTTAGGGGTCATAA+TGG | 0.469402 | 4.4:+2741243 | MS.gene049143:CDS |
| TGATGACAATGTGGGAATCT+TGG | 0.470685 | 4.4:+2741995 | MS.gene049143:CDS |
| TGGATTTGTTGAATGTATAA+GGG | 0.472732 | 4.4:+2736363 | MS.gene049143:CDS |
| GGGGAGCACTGGTTAGGTAT+TGG | 0.472806 | 4.4:+2743076 | MS.gene049143:CDS |
| TGGCACCGGCGGGTCCAAGA+TGG | 0.473198 | 4.4:+2743159 | MS.gene049143:CDS |
| CTTTGTGATTTCAGGCTGAA+AGG | 0.473211 | 4.4:+2735908 | MS.gene049143:intron |
| GATAAGCTACAAGATGCAAT+TGG | 0.474400 | 4.4:+2734489 | MS.gene049143:CDS |
| ATATGCAGTGGTGGTCGTAA+TGG | 0.475004 | 4.4:+2743890 | MS.gene049143:CDS |
| CTTCAGACTTGGAGAGGAAA+AGG | 0.475285 | 4.4:+2743867 | MS.gene049143:CDS |
| AGATGACGTTGGACATAGTC+TGG | 0.475492 | 4.4:-2738378 | None:intergenic |
| GAACTGGTGTTGGTAGAAGC+TGG | 0.477414 | 4.4:+2740962 | MS.gene049143:CDS |
| CTATCAATGCCGGGGAGCAC+TGG | 0.477483 | 4.4:+2743065 | MS.gene049143:CDS |
| AACTTCAAGAGCATCTCTAA+TGG | 0.477706 | 4.4:-2738319 | None:intergenic |
| GCCATATTATCTATCAATGC+CGG | 0.479396 | 4.4:+2743055 | MS.gene049143:CDS |
| ACAACTACGCAATGGATACT+GGG | 0.479970 | 4.4:+2740843 | MS.gene049143:CDS |
| CCGAAGAGCAAGAAGAAAAG+AGG | 0.482040 | 4.4:+2734742 | MS.gene049143:CDS |
| ATCGCTGCTTCAGAAAAGCT+TGG | 0.483229 | 4.4:-2733555 | None:intergenic |
| AGTTCAGAACCACGAAGACT+TGG | 0.484357 | 4.4:-2741461 | None:intergenic |
| AGCTGTGTACGCACACTCTC+AGG | 0.484684 | 4.4:+2741858 | MS.gene049143:CDS |
| ACAGTATCAGATTCTGCTGT+AGG | 0.486546 | 4.4:+2734570 | MS.gene049143:CDS |
| TTAGATAGAGGAATAATAAC+CGG | 0.486698 | 4.4:+2742463 | MS.gene049143:CDS |
| AAAATGCAGGTCACTAAGAA+TGG | 0.488781 | 4.4:+2742315 | MS.gene049143:intron |
| GCTGTCCTAGCATGTCATGC+AGG | 0.489829 | 4.4:+2742412 | MS.gene049143:CDS |
| GTTTGCAGCTTTGATTGAAT+CGG | 0.492513 | 4.4:+2736318 | MS.gene049143:intron |
| CAGCAACCAACTGAGGGAAC+TGG | 0.494103 | 4.4:+2740946 | MS.gene049143:CDS |
| TCGCTGCTTCAGAAAAGCTT+GGG | 0.495170 | 4.4:-2733554 | None:intergenic |
| TCCGTGCCATAAGTTCAGAC+AGG | 0.495377 | 4.4:+2741614 | MS.gene049143:CDS |
| TTCTTGGACTACTTGGAGAG+AGG | 0.503339 | 4.4:+2734432 | MS.gene049143:CDS |
| CCATATTATCTATCAATGCC+GGG | 0.504256 | 4.4:+2743056 | MS.gene049143:CDS |
| GGGCTAAGATTGTCTGCTAA+AGG | 0.504931 | 4.4:-2735803 | None:intergenic |
| GCTCAGTTCCTTGACTCCCA+TGG | 0.505209 | 4.4:+2734408 | MS.gene049143:CDS |
| ATATACCAAGCATCATTGTC+AGG | 0.508269 | 4.4:-2739523 | None:intergenic |
| GAAGAGCTTAAAGGCCATGA+TGG | 0.508700 | 4.4:+2741706 | MS.gene049143:CDS |
| GAGAGAAGTGTGGGATTTGG+TGG | 0.509239 | 4.4:+2741296 | MS.gene049143:CDS |
| CAGGACATACACAATGGATA+AGG | 0.518212 | 4.4:+2742189 | MS.gene049143:CDS |
| AACTCAGGGCAACTTTAAAA+GGG | 0.518881 | 4.4:+2741480 | MS.gene049143:CDS |
| AAGATGCATCGCTTCAGACT+TGG | 0.522126 | 4.4:+2743856 | MS.gene049143:CDS |
| ATTTATTGCAGTGAAAGAGT+TGG | 0.522496 | 4.4:+2736508 | MS.gene049143:CDS |
| AACTGGTGTTGGTAGAAGCT+GGG | 0.523690 | 4.4:+2740963 | MS.gene049143:CDS |
| GGGGAAGGTGGTGTCAGGAT+CGG | 0.523821 | 4.4:+2741636 | MS.gene049143:CDS |
| AATGCCGGGGAGCACTGGTT+AGG | 0.524846 | 4.4:+2743070 | MS.gene049143:CDS |
| ACCGGCGGGTCCAAGATGGC+TGG | 0.526349 | 4.4:+2743163 | MS.gene049143:CDS |
| GTGGGTGACCGTGAAGATGC+TGG | 0.527009 | 4.4:+2741315 | MS.gene049143:CDS |
| TATAAGGGAGCATATGCATT+CGG | 0.528312 | 4.4:+2736378 | MS.gene049143:CDS |
| GACTTCCTGACAATGATGCT+TGG | 0.531125 | 4.4:+2739518 | MS.gene049143:CDS |
| GGACATTAAGGTTAAGCTGC+AGG | 0.531356 | 4.4:+2735945 | MS.gene049143:CDS |
| CATCGGCCCCAAGAGAGACT+TGG | 0.531704 | 4.4:+2743127 | MS.gene049143:CDS |
| TCCATTGCAGGGTCAACCGA+TGG | 0.532105 | 4.4:+2742602 | MS.gene049143:intron |
| AAACATGCAGGTTAAGATAT+GGG | 0.532151 | 4.4:+2741436 | MS.gene049143:intron |
| TGAAAGGGAGCTTATGGTGC+TGG | 0.533555 | 4.4:+2735924 | MS.gene049143:CDS |
| ACCACAGAAAACAGTTGCTA+TGG | 0.540488 | 4.4:+2743204 | MS.gene049143:CDS |
| TATCGATTTGGGAGGAGCTA+CGG | 0.546663 | 4.4:+2738409 | MS.gene049143:CDS |
| AGGAGTCCCATTCTCATTGG+TGG | 0.546919 | 4.4:-2741169 | None:intergenic |
| TGCAGGTCACTAAGAATGGT+TGG | 0.547172 | 4.4:+2742319 | MS.gene049143:intron |
| TCAGGCTCTACCGAGGATGA+AGG | 0.548224 | 4.4:-2734540 | None:intergenic |
| TCAGGAAAATAGTGCTACTC+AGG | 0.549408 | 4.4:+2733522 | MS.gene049143:intron |
| TAATGGGCTTCTAAGACTAT+GGG | 0.549605 | 4.4:+2743907 | MS.gene049143:CDS |
| CCAAAATCGCAGCAGGCCAT+CGG | 0.550722 | 4.4:-2742618 | None:intergenic |
| GTGCAACATCACGAAGTGAC+TGG | 0.552160 | 4.4:+2738292 | MS.gene049143:CDS |
| AGTAATGCCTTCGAGTACTC+AGG | 0.552377 | 4.4:+2734786 | MS.gene049143:CDS |
| GCTTAAAGGCCATGATGGAC+CGG | 0.554379 | 4.4:+2741711 | MS.gene049143:CDS |
| TGACACAGGGTTTATGGCTG+CGG | 0.556216 | 4.4:+2736110 | MS.gene049143:intron |
| TACTGGTAGTGATGATTGGA+CGG | 0.556372 | 4.4:+2742354 | MS.gene049143:CDS |
| TGTTGTGTTGGCTTCACACA+TGG | 0.556655 | 4.4:+2739374 | MS.gene049143:CDS |
| ATATGGGACCCAAGTCTTCG+TGG | 0.559410 | 4.4:+2741452 | MS.gene049143:CDS |
| TCGGATGCAGAGGGAATTGG+TGG | 0.560201 | 4.4:+2736337 | MS.gene049143:CDS |
| CACCAGAGATGCGTAGTTGG+CGG | 0.560361 | 4.4:-2739340 | None:intergenic |
| TTGGCCCTGCATGACATGCT+AGG | 0.560414 | 4.4:-2742417 | None:intergenic |
| CCAAGAAACCATGGGAGTCA+AGG | 0.561438 | 4.4:-2734416 | None:intergenic |
| TCTTGGACTACTTGGAGAGA+GGG | 0.561445 | 4.4:+2734433 | MS.gene049143:CDS |
| GACTACTTGGAGAGAGGGGT+AGG | 0.564096 | 4.4:+2734438 | MS.gene049143:CDS |
| TAAAGAATACCGGTCCATCA+TGG | 0.564203 | 4.4:-2741720 | None:intergenic |
| AAGTATTGTTCCATATTCAA+AGG | 0.566564 | 4.4:-2736170 | None:intergenic |
| AGTCACCAGAGATGCGTAGT+TGG | 0.569414 | 4.4:-2739343 | None:intergenic |
| AAAATTACCATGGGCTCTGA+CGG | 0.569920 | 4.4:-2733595 | None:intergenic |
| CAATCAACCGTCAGAGCCCA+TGG | 0.573640 | 4.4:+2733588 | MS.gene049143:CDS |
| ACCAGCCATCTTGGACCCGC+CGG | 0.575258 | 4.4:-2743164 | None:intergenic |
| AACTTACAGCTCTCTCAAGT+GGG | 0.576496 | 4.4:-2735823 | None:intergenic |
| AACACAGTGGAGAGCAGTAA+TGG | 0.578044 | 4.4:-2741268 | None:intergenic |
| AGCTACAAGATGCAATTGGA+AGG | 0.578654 | 4.4:+2734493 | MS.gene049143:CDS |
| GTTCGTAAATGGACGTCTGA+CGG | 0.579118 | 4.4:+2741039 | MS.gene049143:CDS |
| ACAATAGGGTTGCCAACATG+TGG | 0.579122 | 4.4:+2742132 | MS.gene049143:intron |
| CCCTGTCTGAACTTATGGCA+CGG | 0.581338 | 4.4:-2741615 | None:intergenic |
| TGTGGGACATTCGTGCTAGT+AGG | 0.583044 | 4.4:+2742150 | MS.gene049143:CDS |
| CCAACACCAGTTCCCTCAGT+TGG | 0.584993 | 4.4:-2740952 | None:intergenic |
| CCAAGTAGTCCAAGAAACCA+TGG | 0.586070 | 4.4:-2734425 | None:intergenic |
| GCAAACAAGATTTATCAGCT+GGG | 0.587794 | 4.4:+2741193 | MS.gene049143:CDS |
| TCTTCGTGGTTCTGAACTCA+GGG | 0.588810 | 4.4:+2741466 | MS.gene049143:CDS |
| TAGTGGAAGTACAGACTGCT+CGG | 0.590261 | 4.4:+2741347 | MS.gene049143:CDS |
| AGCACGAATGTCCCACATGT+TGG | 0.591309 | 4.4:-2742144 | None:intergenic |
| CTACAAGATGCAATTGGAAG+GGG | 0.591452 | 4.4:+2734495 | MS.gene049143:CDS |
| TTGATTGAATCGGATGCAGA+GGG | 0.592576 | 4.4:+2736328 | MS.gene049143:CDS |
| GGATATGAGACAAGAATCCT+CGG | 0.598438 | 4.4:-2740819 | None:intergenic |
| CCGTGCCATAAGTTCAGACA+GGG | 0.599185 | 4.4:+2741615 | MS.gene049143:CDS |
| GCGGGTCCAAGATGGCTGGT+TGG | 0.600256 | 4.4:+2743167 | MS.gene049143:CDS |
| GCTACAAGATGCAATTGGAA+GGG | 0.600750 | 4.4:+2734494 | MS.gene049143:CDS |
| TAACTTACAGCTCTCTCAAG+TGG | 0.602459 | 4.4:-2735824 | None:intergenic |
| CCAACTGAGGGAACTGGTGT+TGG | 0.603059 | 4.4:+2740952 | MS.gene049143:CDS |
| CTGTCCTAGCATGTCATGCA+GGG | 0.606828 | 4.4:+2742413 | MS.gene049143:CDS |
| TATTTCTCTATCGATTTGGG+AGG | 0.608147 | 4.4:+2738401 | MS.gene049143:CDS |
| GCTGATAAATCTTGTTTGCG+AGG | 0.609310 | 4.4:-2741189 | None:intergenic |
| TGTTACAAAGAGAGAAGTGT+GGG | 0.609452 | 4.4:+2741287 | MS.gene049143:CDS |
| GTTCAGAACCACGAAGACTT+GGG | 0.611280 | 4.4:-2741460 | None:intergenic |
| TGAGGATCAGCAACCAACTG+AGG | 0.613222 | 4.4:+2740939 | MS.gene049143:CDS |
| AAACAAGATTTATCAGCTGG+GGG | 0.614081 | 4.4:+2741195 | MS.gene049143:CDS |
| TTTGATTGAATCGGATGCAG+AGG | 0.616447 | 4.4:+2736327 | MS.gene049143:CDS |
| GCATCGCTTCAGACTTGGAG+AGG | 0.617836 | 4.4:+2743861 | MS.gene049143:CDS |
| ATGACGGCACTGTGAAAATG+TGG | 0.618860 | 4.4:+2741904 | MS.gene049143:CDS |
| CATATCCAACAACTACGCAA+TGG | 0.621108 | 4.4:+2740835 | MS.gene049143:CDS |
| CAAACAAGATTTATCAGCTG+GGG | 0.621480 | 4.4:+2741194 | MS.gene049143:CDS |
| CTTGGACTACTTGGAGAGAG+GGG | 0.622532 | 4.4:+2734434 | MS.gene049143:CDS |
| ATAGAGAAATAAGATGACGT+TGG | 0.627862 | 4.4:-2738389 | None:intergenic |
| GATAGATGTGTTGCAACTGT+TGG | 0.630683 | 4.4:+2741939 | MS.gene049143:CDS |
| GTGCTAACTGCATCCCATGA+CGG | 0.630732 | 4.4:+2741888 | MS.gene049143:CDS |
| AATACCTAACCAGTGCTCCC+CGG | 0.632209 | 4.4:-2743074 | None:intergenic |
| CAAGTAGTCCAAGAAACCAT+GGG | 0.633631 | 4.4:-2734424 | None:intergenic |
| GAGGATCAGCAACCAACTGA+GGG | 0.637535 | 4.4:+2740940 | MS.gene049143:CDS |
| ACTAATGTCCGCATGCTTAG+GGG | 0.639688 | 4.4:+2741234 | MS.gene049143:CDS |
| GCTTCTTAAATTGGAAACGA+CGG | 0.640027 | 4.4:+2736132 | MS.gene049143:CDS |
| ACTCAGGAAGACATGCTCCA+AGG | 0.645558 | 4.4:+2734802 | MS.gene049143:CDS |
| AGAGAAGTGTGGGATTTGGT+GGG | 0.646745 | 4.4:+2741297 | MS.gene049143:CDS |
| CAACTACGCAATGGATACTG+GGG | 0.647155 | 4.4:+2740844 | MS.gene049143:CDS |
| ATGTCTTCCTGAGTACTCGA+AGG | 0.649539 | 4.4:-2734793 | None:intergenic |
| AACTTTCAGGACATACACAA+TGG | 0.652328 | 4.4:+2742183 | MS.gene049143:CDS |
| ATTGCAGAGAGGAACAGTAT+CGG | 0.652999 | 4.4:+2739556 | MS.gene049143:CDS |
| CGTAAATGGACGTCTGACGG+AGG | 0.653202 | 4.4:+2741042 | MS.gene049143:CDS |
| CAATGTGGGAATCTTGGCTG+CGG | 0.653375 | 4.4:+2742001 | MS.gene049143:CDS |
| CCATATTCAAAGGATGAGAG+AGG | 0.657556 | 4.4:-2736160 | None:intergenic |
| CATATTATCTATCAATGCCG+GGG | 0.659129 | 4.4:+2743057 | MS.gene049143:CDS |
| AGGAAAAGGATATGCAGTGG+TGG | 0.661576 | 4.4:+2743881 | MS.gene049143:CDS |
| TGCAGACTGTGCCTTCGTTG+AGG | 0.664950 | 4.4:-2740872 | None:intergenic |
| CATGGAATATGATGACAATG+TGG | 0.665647 | 4.4:+2741986 | MS.gene049143:CDS |
| GTACTCGAAGGCATTACTAA+CGG | 0.670553 | 4.4:-2734781 | None:intergenic |
| CTGGGGATTCACCTCAACGA+AGG | 0.672035 | 4.4:+2740861 | MS.gene049143:CDS |
| CATTATGACCCCTAAGCATG+CGG | 0.675877 | 4.4:-2741242 | None:intergenic |
| CAATAGGGTTGCCAACATGT+GGG | 0.675978 | 4.4:+2742133 | MS.gene049143:intron |
| GTGCCATAAGTTCAGACAGG+GGG | 0.683293 | 4.4:+2741617 | MS.gene049143:CDS |
| CTTCTCTCTTTGTAACACAG+TGG | 0.683395 | 4.4:-2741281 | None:intergenic |
| GTGTTACAAAGAGAGAAGTG+TGG | 0.687619 | 4.4:+2741286 | MS.gene049143:CDS |
| GAGAGGAAAAGGATATGCAG+TGG | 0.688605 | 4.4:+2743878 | MS.gene049143:CDS |
| ATGGAATATGATGACAATGT+GGG | 0.694409 | 4.4:+2741987 | MS.gene049143:CDS |
| ATATTCATACCAGAAAATTG+CGG | 0.699950 | 4.4:-2733420 | None:intergenic |
| TGACGGCACTGTGAAAATGT+GGG | 0.702884 | 4.4:+2741905 | MS.gene049143:CDS |
| AAACTACCAAGTCTCTCTTG+GGG | 0.709313 | 4.4:-2743133 | None:intergenic |
| TAAAATCTCAGGCTCTACCG+AGG | 0.710401 | 4.4:-2734547 | None:intergenic |
| AACAAGATTTATCAGCTGGG+GGG | 0.718223 | 4.4:+2741196 | MS.gene049143:CDS |
| TGATCGAAACAATTGCAGAG+AGG | 0.730278 | 4.4:+2739545 | MS.gene049143:CDS |
| AGAATATGGTCAGTTTCACG+AGG | 0.743753 | 4.4:+2742379 | MS.gene049143:CDS |
| CGTGCCATAAGTTCAGACAG+GGG | 0.822615 | 4.4:+2741616 | MS.gene049143:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 2733378 | 2743949 | 2733378 | ID=MS.gene049143 |
| chr4.4 | mRNA | 2733378 | 2743949 | 2733378 | ID=MS.gene049143.t1;Parent=MS.gene049143 |
| chr4.4 | exon | 2733378 | 2733432 | 2733378 | ID=MS.gene049143.t1.exon1;Parent=MS.gene049143.t1 |
| chr4.4 | CDS | 2733378 | 2733432 | 2733378 | ID=cds.MS.gene049143.t1;Parent=MS.gene049143.t1 |
| chr4.4 | exon | 2733526 | 2733609 | 2733526 | ID=MS.gene049143.t1.exon2;Parent=MS.gene049143.t1 |
| chr4.4 | CDS | 2733526 | 2733609 | 2733526 | ID=cds.MS.gene049143.t1;Parent=MS.gene049143.t1 |
| chr4.4 | exon | 2734405 | 2734600 | 2734405 | ID=MS.gene049143.t1.exon3;Parent=MS.gene049143.t1 |
| chr4.4 | CDS | 2734405 | 2734600 | 2734405 | ID=cds.MS.gene049143.t1;Parent=MS.gene049143.t1 |
| chr4.4 | exon | 2734694 | 2734823 | 2734694 | ID=MS.gene049143.t1.exon4;Parent=MS.gene049143.t1 |
| chr4.4 | CDS | 2734694 | 2734823 | 2734694 | ID=cds.MS.gene049143.t1;Parent=MS.gene049143.t1 |
| chr4.4 | exon | 2735796 | 2735838 | 2735796 | ID=MS.gene049143.t1.exon5;Parent=MS.gene049143.t1 |
| chr4.4 | CDS | 2735796 | 2735838 | 2735796 | ID=cds.MS.gene049143.t1;Parent=MS.gene049143.t1 |
| chr4.4 | exon | 2735922 | 2735966 | 2735922 | ID=MS.gene049143.t1.exon6;Parent=MS.gene049143.t1 |
| chr4.4 | CDS | 2735922 | 2735966 | 2735922 | ID=cds.MS.gene049143.t1;Parent=MS.gene049143.t1 |
| chr4.4 | exon | 2736118 | 2736193 | 2736118 | ID=MS.gene049143.t1.exon7;Parent=MS.gene049143.t1 |
| chr4.4 | CDS | 2736118 | 2736193 | 2736118 | ID=cds.MS.gene049143.t1;Parent=MS.gene049143.t1 |
| chr4.4 | exon | 2736326 | 2736399 | 2736326 | ID=MS.gene049143.t1.exon8;Parent=MS.gene049143.t1 |
| chr4.4 | CDS | 2736326 | 2736399 | 2736326 | ID=cds.MS.gene049143.t1;Parent=MS.gene049143.t1 |
| chr4.4 | exon | 2736479 | 2736529 | 2736479 | ID=MS.gene049143.t1.exon9;Parent=MS.gene049143.t1 |
| chr4.4 | CDS | 2736479 | 2736529 | 2736479 | ID=cds.MS.gene049143.t1;Parent=MS.gene049143.t1 |
| chr4.4 | exon | 2738273 | 2738430 | 2738273 | ID=MS.gene049143.t1.exon10;Parent=MS.gene049143.t1 |
| chr4.4 | CDS | 2738273 | 2738430 | 2738273 | ID=cds.MS.gene049143.t1;Parent=MS.gene049143.t1 |
| chr4.4 | exon | 2738535 | 2738582 | 2738535 | ID=MS.gene049143.t1.exon11;Parent=MS.gene049143.t1 |
| chr4.4 | CDS | 2738535 | 2738582 | 2738535 | ID=cds.MS.gene049143.t1;Parent=MS.gene049143.t1 |
| chr4.4 | exon | 2739338 | 2739395 | 2739338 | ID=MS.gene049143.t1.exon12;Parent=MS.gene049143.t1 |
| chr4.4 | CDS | 2739338 | 2739395 | 2739338 | ID=cds.MS.gene049143.t1;Parent=MS.gene049143.t1 |
| chr4.4 | exon | 2739508 | 2739591 | 2739508 | ID=MS.gene049143.t1.exon13;Parent=MS.gene049143.t1 |
| chr4.4 | CDS | 2739508 | 2739591 | 2739508 | ID=cds.MS.gene049143.t1;Parent=MS.gene049143.t1 |
| chr4.4 | exon | 2740811 | 2741072 | 2740811 | ID=MS.gene049143.t1.exon14;Parent=MS.gene049143.t1 |
| chr4.4 | CDS | 2740811 | 2741072 | 2740811 | ID=cds.MS.gene049143.t1;Parent=MS.gene049143.t1 |
| chr4.4 | exon | 2741169 | 2741368 | 2741169 | ID=MS.gene049143.t1.exon15;Parent=MS.gene049143.t1 |
| chr4.4 | CDS | 2741169 | 2741368 | 2741169 | ID=cds.MS.gene049143.t1;Parent=MS.gene049143.t1 |
| chr4.4 | exon | 2741446 | 2741510 | 2741446 | ID=MS.gene049143.t1.exon16;Parent=MS.gene049143.t1 |
| chr4.4 | CDS | 2741446 | 2741510 | 2741446 | ID=cds.MS.gene049143.t1;Parent=MS.gene049143.t1 |
| chr4.4 | exon | 2741609 | 2741732 | 2741609 | ID=MS.gene049143.t1.exon17;Parent=MS.gene049143.t1 |
| chr4.4 | CDS | 2741609 | 2741732 | 2741609 | ID=cds.MS.gene049143.t1;Parent=MS.gene049143.t1 |
| chr4.4 | exon | 2741855 | 2742036 | 2741855 | ID=MS.gene049143.t1.exon18;Parent=MS.gene049143.t1 |
| chr4.4 | CDS | 2741855 | 2742036 | 2741855 | ID=cds.MS.gene049143.t1;Parent=MS.gene049143.t1 |
| chr4.4 | exon | 2742139 | 2742210 | 2742139 | ID=MS.gene049143.t1.exon19;Parent=MS.gene049143.t1 |
| chr4.4 | CDS | 2742139 | 2742210 | 2742139 | ID=cds.MS.gene049143.t1;Parent=MS.gene049143.t1 |
| chr4.4 | exon | 2742324 | 2742484 | 2742324 | ID=MS.gene049143.t1.exon20;Parent=MS.gene049143.t1 |
| chr4.4 | CDS | 2742324 | 2742484 | 2742324 | ID=cds.MS.gene049143.t1;Parent=MS.gene049143.t1 |
| chr4.4 | exon | 2742612 | 2742653 | 2742612 | ID=MS.gene049143.t1.exon21;Parent=MS.gene049143.t1 |
| chr4.4 | CDS | 2742612 | 2742653 | 2742612 | ID=cds.MS.gene049143.t1;Parent=MS.gene049143.t1 |
| chr4.4 | exon | 2743014 | 2743225 | 2743014 | ID=MS.gene049143.t1.exon22;Parent=MS.gene049143.t1 |
| chr4.4 | CDS | 2743014 | 2743225 | 2743014 | ID=cds.MS.gene049143.t1;Parent=MS.gene049143.t1 |
| chr4.4 | exon | 2743854 | 2743949 | 2743854 | ID=MS.gene049143.t1.exon23;Parent=MS.gene049143.t1 |
| chr4.4 | CDS | 2743854 | 2743949 | 2743854 | ID=cds.MS.gene049143.t1;Parent=MS.gene049143.t1 |
| Gene Sequence |
| Protein sequence |
