Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072905.t1 | XP_003603415.1 | 99.7 | 349 | 1 | 0 | 1 | 349 | 1 | 349 | 2.40E-186 | 661.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072905.t1 | Q3E6T0 | 84.8 | 349 | 53 | 0 | 1 | 349 | 1 | 349 | 7.5e-165 | 581.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072905.t1 | G7JB38 | 99.7 | 349 | 1 | 0 | 1 | 349 | 1 | 349 | 1.7e-186 | 661.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049143 | MS.gene072905 | 0.81304 | 3.13E-51 | -1.69E-46 |
| MS.gene049807 | MS.gene072905 | 0.809119 | 2.21E-50 | -1.69E-46 |
| MS.gene049887 | MS.gene072905 | 0.827898 | 1.21E-54 | -1.69E-46 |
| MS.gene050838 | MS.gene072905 | 0.833946 | 3.98E-56 | -1.69E-46 |
| MS.gene050894 | MS.gene072905 | 0.821253 | 4.45E-53 | -1.69E-46 |
| MS.gene051120 | MS.gene072905 | 0.801498 | 8.75E-49 | -1.69E-46 |
| MS.gene051885 | MS.gene072905 | 0.871581 | 6.13E-67 | -1.69E-46 |
| MS.gene052609 | MS.gene072905 | 0.807536 | 4.82E-50 | -1.69E-46 |
| MS.gene052732 | MS.gene072905 | 0.814979 | 1.17E-51 | -1.69E-46 |
| MS.gene053143 | MS.gene072905 | 0.857314 | 1.78E-62 | -1.69E-46 |
| MS.gene053144 | MS.gene072905 | 0.816626 | 5.02E-52 | -1.69E-46 |
| MS.gene053171 | MS.gene072905 | 0.813774 | 2.16E-51 | -1.69E-46 |
| MS.gene054554 | MS.gene072905 | 0.827861 | 1.24E-54 | -1.69E-46 |
| MS.gene054584 | MS.gene072905 | 0.816731 | 4.75E-52 | -1.69E-46 |
| MS.gene054585 | MS.gene072905 | 0.844205 | 8.73E-59 | -1.69E-46 |
| MS.gene058720 | MS.gene072905 | 0.836344 | 9.89E-57 | -1.69E-46 |
| MS.gene05880 | MS.gene072905 | 0.822137 | 2.78E-53 | -1.69E-46 |
| MS.gene059171 | MS.gene072905 | 0.809221 | 2.11E-50 | -1.69E-46 |
| MS.gene060359 | MS.gene072905 | 0.800385 | 1.48E-48 | -1.69E-46 |
| MS.gene061006 | MS.gene072905 | 0.812916 | 3.33E-51 | -1.69E-46 |
| MS.gene06117 | MS.gene072905 | 0.835446 | 1.67E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene014824 | MS.gene072905 | PPI |
| MS.gene32620 | MS.gene072905 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072905.t1 | MTR_3g107470 | 99.713 | 349 | 1 | 0 | 1 | 349 | 1 | 349 | 0.0 | 708 |
| MS.gene072905.t1 | MTR_4g114360 | 84.593 | 344 | 53 | 0 | 6 | 349 | 2 | 345 | 0.0 | 611 |
| MS.gene072905.t1 | MTR_0011s0320 | 77.874 | 348 | 72 | 3 | 6 | 348 | 2 | 349 | 0.0 | 554 |
| MS.gene072905.t1 | MTR_0662s0010 | 86.232 | 276 | 38 | 0 | 6 | 281 | 2 | 277 | 1.08e-176 | 491 |
| MS.gene072905.t1 | MTR_7g110380 | 45.238 | 336 | 179 | 3 | 13 | 347 | 10 | 341 | 2.81e-104 | 311 |
| MS.gene072905.t1 | MTR_4g123900 | 50.327 | 306 | 150 | 2 | 13 | 317 | 6 | 310 | 2.29e-99 | 299 |
| MS.gene072905.t1 | MTR_4g123900 | 51.220 | 287 | 138 | 2 | 13 | 298 | 6 | 291 | 1.18e-94 | 284 |
| MS.gene072905.t1 | MTR_2g070400 | 46.326 | 313 | 162 | 3 | 17 | 327 | 10 | 318 | 2.90e-90 | 274 |
| MS.gene072905.t1 | MTR_8g090130 | 33.446 | 296 | 183 | 7 | 22 | 309 | 16 | 305 | 3.26e-30 | 117 |
| MS.gene072905.t1 | MTR_3g462070 | 30.033 | 303 | 196 | 6 | 16 | 309 | 8 | 303 | 5.17e-30 | 117 |
| MS.gene072905.t1 | MTR_5g081710 | 29.866 | 298 | 195 | 5 | 20 | 309 | 11 | 302 | 1.14e-29 | 115 |
| MS.gene072905.t1 | MTR_3g070000 | 29.392 | 296 | 195 | 5 | 22 | 309 | 29 | 318 | 1.01e-28 | 114 |
| MS.gene072905.t1 | MTR_8g016090 | 30.259 | 347 | 214 | 11 | 14 | 340 | 165 | 503 | 1.23e-26 | 110 |
| MS.gene072905.t1 | MTR_4g101860 | 28.053 | 303 | 206 | 5 | 22 | 317 | 57 | 354 | 2.39e-26 | 107 |
| MS.gene072905.t1 | MTR_4g018760 | 29.553 | 291 | 195 | 5 | 25 | 309 | 20 | 306 | 7.76e-26 | 105 |
| MS.gene072905.t1 | MTR_1g030320 | 22.840 | 324 | 237 | 4 | 25 | 339 | 21 | 340 | 4.60e-24 | 101 |
| MS.gene072905.t1 | MTR_3g072380 | 22.642 | 318 | 236 | 4 | 25 | 336 | 22 | 335 | 2.62e-23 | 99.4 |
| MS.gene072905.t1 | MTR_8g016090 | 31.365 | 271 | 160 | 10 | 88 | 340 | 191 | 453 | 6.81e-19 | 87.8 |
| MS.gene072905.t1 | MTR_2g094640 | 23.967 | 363 | 236 | 12 | 1 | 347 | 1 | 339 | 7.93e-19 | 86.7 |
| MS.gene072905.t1 | MTR_4g058860 | 23.706 | 367 | 241 | 11 | 1 | 349 | 1 | 346 | 5.46e-17 | 81.3 |
| MS.gene072905.t1 | MTR_3g094260 | 26.667 | 300 | 183 | 9 | 46 | 327 | 37 | 317 | 3.87e-15 | 75.9 |
| MS.gene072905.t1 | MTR_8g016090 | 28.889 | 180 | 122 | 3 | 14 | 189 | 165 | 342 | 1.34e-13 | 71.6 |
| MS.gene072905.t1 | MTR_3g094270 | 24.516 | 310 | 191 | 11 | 46 | 339 | 37 | 319 | 1.94e-13 | 70.9 |
| MS.gene072905.t1 | MTR_2g038410 | 24.128 | 344 | 244 | 9 | 8 | 346 | 42 | 373 | 1.43e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072905.t1 | AT5G25400 | 84.814 | 349 | 53 | 0 | 1 | 349 | 1 | 349 | 0.0 | 622 |
| MS.gene072905.t1 | AT4G32390 | 84.857 | 350 | 52 | 1 | 1 | 349 | 1 | 350 | 0.0 | 619 |
| MS.gene072905.t1 | AT2G25520 | 84.241 | 349 | 53 | 1 | 1 | 349 | 1 | 347 | 0.0 | 611 |
| MS.gene072905.t1 | AT5G11230 | 82.235 | 349 | 61 | 1 | 1 | 348 | 1 | 349 | 0.0 | 591 |
| MS.gene072905.t1 | AT3G17430 | 46.708 | 319 | 161 | 4 | 32 | 349 | 26 | 336 | 1.85e-98 | 296 |
| MS.gene072905.t1 | AT3G17430 | 46.708 | 319 | 161 | 4 | 32 | 349 | 26 | 336 | 1.85e-98 | 296 |
| MS.gene072905.t1 | AT1G48230 | 46.273 | 322 | 166 | 4 | 32 | 348 | 26 | 345 | 5.43e-95 | 287 |
| MS.gene072905.t1 | AT3G14410 | 45.322 | 342 | 176 | 5 | 8 | 344 | 5 | 340 | 2.33e-88 | 269 |
| MS.gene072905.t1 | AT1G53660 | 41.441 | 333 | 182 | 5 | 10 | 340 | 9 | 330 | 1.74e-86 | 264 |
| MS.gene072905.t1 | AT1G53660 | 41.441 | 333 | 182 | 5 | 10 | 340 | 27 | 348 | 2.68e-86 | 264 |
| MS.gene072905.t1 | AT1G53660 | 42.484 | 306 | 163 | 5 | 37 | 340 | 2 | 296 | 1.25e-82 | 253 |
| MS.gene072905.t1 | AT1G48230 | 44.161 | 274 | 146 | 4 | 80 | 348 | 1 | 272 | 6.85e-73 | 228 |
| MS.gene072905.t1 | AT1G53660 | 42.510 | 247 | 130 | 4 | 95 | 340 | 1 | 236 | 9.52e-63 | 200 |
| MS.gene072905.t1 | AT1G53660 | 41.791 | 201 | 116 | 1 | 9 | 208 | 26 | 226 | 1.21e-52 | 174 |
| MS.gene072905.t1 | AT5G05820 | 29.730 | 296 | 194 | 5 | 22 | 309 | 15 | 304 | 1.22e-28 | 113 |
| MS.gene072905.t1 | AT3G11320 | 29.392 | 296 | 195 | 5 | 22 | 309 | 15 | 304 | 4.11e-28 | 112 |
| MS.gene072905.t1 | AT1G06470 | 27.557 | 352 | 229 | 11 | 14 | 349 | 71 | 412 | 1.79e-26 | 109 |
| MS.gene072905.t1 | AT1G06470 | 27.557 | 352 | 229 | 11 | 14 | 349 | 71 | 412 | 1.79e-26 | 109 |
| MS.gene072905.t1 | AT1G06470 | 27.557 | 352 | 229 | 11 | 14 | 349 | 71 | 412 | 1.79e-26 | 109 |
| MS.gene072905.t1 | AT1G06470 | 27.557 | 352 | 229 | 11 | 14 | 349 | 71 | 412 | 1.79e-26 | 109 |
| MS.gene072905.t1 | AT5G04160 | 28.710 | 310 | 209 | 5 | 7 | 309 | 1 | 305 | 1.05e-25 | 105 |
| MS.gene072905.t1 | AT3G10290 | 28.383 | 303 | 207 | 4 | 13 | 309 | 53 | 351 | 1.06e-25 | 106 |
| MS.gene072905.t1 | AT1G21870 | 22.485 | 338 | 251 | 4 | 1 | 334 | 1 | 331 | 2.55e-25 | 104 |
| MS.gene072905.t1 | AT1G77610 | 21.662 | 337 | 253 | 4 | 7 | 339 | 1 | 330 | 1.11e-23 | 100 |
| MS.gene072905.t1 | AT1G12500 | 27.885 | 312 | 209 | 9 | 7 | 309 | 48 | 352 | 5.51e-23 | 98.6 |
| MS.gene072905.t1 | AT2G28315 | 26.944 | 360 | 232 | 13 | 1 | 349 | 1 | 340 | 4.03e-22 | 95.9 |
| MS.gene072905.t1 | AT2G28315 | 27.190 | 331 | 213 | 11 | 1 | 323 | 1 | 311 | 3.86e-19 | 87.0 |
| MS.gene072905.t1 | AT2G30460 | 26.646 | 319 | 194 | 12 | 47 | 346 | 38 | 335 | 4.85e-15 | 75.9 |
| MS.gene072905.t1 | AT2G30460 | 26.646 | 319 | 194 | 12 | 47 | 346 | 38 | 335 | 4.85e-15 | 75.9 |
| MS.gene072905.t1 | AT2G30460 | 27.899 | 276 | 168 | 10 | 88 | 346 | 53 | 314 | 1.37e-14 | 74.3 |
| MS.gene072905.t1 | AT2G30460 | 27.899 | 276 | 168 | 10 | 88 | 346 | 53 | 314 | 1.37e-14 | 74.3 |
| MS.gene072905.t1 | AT2G30460 | 27.899 | 276 | 168 | 10 | 88 | 346 | 53 | 314 | 1.37e-14 | 74.3 |
| MS.gene072905.t1 | AT1G06890 | 25.625 | 320 | 198 | 12 | 46 | 346 | 37 | 335 | 4.57e-13 | 69.7 |
| MS.gene072905.t1 | AT1G06890 | 25.472 | 318 | 199 | 11 | 47 | 346 | 38 | 335 | 4.61e-13 | 69.7 |
| MS.gene072905.t1 | AT1G06890 | 25.472 | 318 | 199 | 11 | 47 | 346 | 38 | 335 | 4.61e-13 | 69.7 |
| MS.gene072905.t1 | AT1G06890 | 25.625 | 320 | 198 | 12 | 46 | 346 | 37 | 335 | 4.72e-13 | 69.7 |
Find 65 sgRNAs with CRISPR-Local
Find 73 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGATCATTGTTAGGGAAAT+TGG | 0.112906 | 3.4:-93362250 | None:intergenic |
| CTTGAATTCTCTTTCAAAAT+TGG | 0.124329 | 3.4:-93362769 | None:intergenic |
| TGGGTATGGTCTTGCTTTCT+TGG | 0.200875 | 3.4:+93362981 | MS.gene072905:CDS |
| CACTCTATTCTCTTTCTCTT+TGG | 0.210913 | 3.4:+93362383 | MS.gene072905:CDS |
| GTTACACCCATTAATTTGTT+TGG | 0.247768 | 3.4:+93362961 | MS.gene072905:CDS |
| ACCATACCCAAACAAATTAA+TGG | 0.252828 | 3.4:-93362968 | None:intergenic |
| AAGACATGTGGATCATTGTT+AGG | 0.332971 | 3.4:-93362258 | None:intergenic |
| GGTGTTGCTGTTGCTGCTTA+TGG | 0.337039 | 3.4:+93362556 | MS.gene072905:CDS |
| TTATAATCATTCAAAGTTGC+AGG | 0.345135 | 3.4:+93363014 | MS.gene072905:CDS |
| TTCAAAGTTGCAGGCACTTA+AGG | 0.351119 | 3.4:+93363023 | MS.gene072905:CDS |
| TAACATGCTTTCCATTTCAA+TGG | 0.363837 | 3.4:+93362534 | MS.gene072905:CDS |
| CTCTCTTCCGTTGTTCCAAT+CGG | 0.368130 | 3.4:+93362358 | MS.gene072905:CDS |
| TTACACCCATTAATTTGTTT+GGG | 0.369732 | 3.4:+93362962 | MS.gene072905:CDS |
| CGTACACATACGTAGCGATA+TGG | 0.372435 | 3.4:+93362155 | MS.gene072905:CDS |
| GGGTATGGTCTTGCTTTCTT+GGG | 0.380931 | 3.4:+93362982 | MS.gene072905:CDS |
| CCCATTAATTTGTTTGGGTA+TGG | 0.385268 | 3.4:+93362967 | MS.gene072905:CDS |
| TTATGTTGCACCTTGTTGTT+TGG | 0.401542 | 3.4:+93362711 | MS.gene072905:CDS |
| GGATCATTGTTAGGGAAATT+GGG | 0.407611 | 3.4:-93362249 | None:intergenic |
| CCTGTTGCTGTTTATTCCAT+CGG | 0.411489 | 3.4:+93362469 | MS.gene072905:CDS |
| GCTTTGACAATGAATGTTGC+TGG | 0.418945 | 3.4:+93362883 | MS.gene072905:CDS |
| CGGATTCAATGAAATCCCTT+TGG | 0.424060 | 3.4:-93362674 | None:intergenic |
| ACACAAGCTGATGAAGAAAC+TGG | 0.430294 | 3.4:+93363069 | MS.gene072905:CDS |
| ACATAATACAAGGACGTAAT+CGG | 0.431146 | 3.4:-93362694 | None:intergenic |
| TGGTCTTGCTTTCTTGGGTG+TGG | 0.436023 | 3.4:+93362987 | MS.gene072905:CDS |
| CCATACCCAAACAAATTAAT+GGG | 0.439143 | 3.4:-93362967 | None:intergenic |
| AACAGCAACACCCATTGAAA+TGG | 0.448245 | 3.4:-93362545 | None:intergenic |
| CCGATGGAATAAACAGCAAC+AGG | 0.456849 | 3.4:-93362469 | None:intergenic |
| AACATGCTTTCCATTTCAAT+GGG | 0.463522 | 3.4:+93362535 | MS.gene072905:CDS |
| TTGCTGGTGTTGTTAAAGAT+TGG | 0.469874 | 3.4:+93362899 | MS.gene072905:CDS |
| GATTTGAATCATAACCAATC+TGG | 0.477776 | 3.4:-93362641 | None:intergenic |
| CAAATCTTGCTTACATCCAA+AGG | 0.480386 | 3.4:+93362658 | MS.gene072905:CDS |
| GCTGTTTATTCCATCGGCGT+TGG | 0.482745 | 3.4:+93362475 | MS.gene072905:CDS |
| GATAGAGAAGGTGATGGATC+AGG | 0.496335 | 3.4:+93363105 | MS.gene072905:CDS |
| GGCTAAAGAAGCACAGAAGA+AGG | 0.498350 | 3.4:+93363044 | MS.gene072905:CDS |
| AGACATGTGGATCATTGTTA+GGG | 0.498510 | 3.4:-93362257 | None:intergenic |
| ACTTCGCGAGACATTGAAAC+GGG | 0.499107 | 3.4:-93362331 | None:intergenic |
| AAATCTTGCTTACATCCAAA+GGG | 0.503028 | 3.4:+93362659 | MS.gene072905:CDS |
| GTCTGTTCCTTGGATCCTTG+TGG | 0.511759 | 3.4:+93362741 | MS.gene072905:CDS |
| GTGAAGCTAGATTTGATACA+TGG | 0.526661 | 3.4:+93362578 | MS.gene072905:CDS |
| TGCTTTCGAAGCGACCAGAT+TGG | 0.532292 | 3.4:+93362627 | MS.gene072905:CDS |
| AGAGAATAGAGTGCTCCGAT+TGG | 0.540437 | 3.4:-93362373 | None:intergenic |
| AACTTCGCGAGACATTGAAA+CGG | 0.574008 | 3.4:-93362332 | None:intergenic |
| ATTGTTAGGGAAATTGGGAA+TGG | 0.577490 | 3.4:-93362244 | None:intergenic |
| GGATACTCCACAAGGATCCA+AGG | 0.583076 | 3.4:-93362748 | None:intergenic |
| CTTGAGGATAGAGAAGGTGA+TGG | 0.583598 | 3.4:+93363099 | MS.gene072905:CDS |
| CACGAACGAGAAGAATAGCT+AGG | 0.589686 | 3.4:-93362291 | None:intergenic |
| ACAACAACAATGGGGAAAGG+TGG | 0.593239 | 3.4:+93362094 | None:intergenic |
| ACAAGGTGCAACATAATACA+AGG | 0.594824 | 3.4:-93362704 | None:intergenic |
| AAAGGTGGATCTGTAAGCGA+TGG | 0.595505 | 3.4:+93362109 | MS.gene072905:CDS |
| GAGTGCTCCGATTGGAACAA+CGG | 0.598951 | 3.4:-93362365 | None:intergenic |
| AACAGAGAGGTAAATGTAAG+CGG | 0.607999 | 3.4:-93362416 | None:intergenic |
| TGAAGCTAGATTTGATACAT+GGG | 0.631766 | 3.4:+93362579 | MS.gene072905:CDS |
| AGGTTGCTTGAGGATAGAGA+AGG | 0.638167 | 3.4:+93363093 | MS.gene072905:CDS |
| ACGAACGAGAAGAATAGCTA+GGG | 0.640942 | 3.4:-93362290 | None:intergenic |
| CAAACAACAACAATGGGGAA+AGG | 0.651900 | 3.4:+93362091 | None:intergenic |
| AAGCTGATGAAGAAACTGGA+AGG | 0.653904 | 3.4:+93363073 | MS.gene072905:CDS |
| AATGGAAAGCATGTTAAACA+TGG | 0.654067 | 3.4:-93362527 | None:intergenic |
| AGAAACTGGAAGGTTGCTTG+AGG | 0.654156 | 3.4:+93363083 | MS.gene072905:CDS |
| AGCTAGATTTGATACATGGG+GGG | 0.655581 | 3.4:+93362582 | MS.gene072905:CDS |
| TCAAAATTGGATACTCCACA+AGG | 0.664363 | 3.4:-93362756 | None:intergenic |
| GAAGCTAGATTTGATACATG+GGG | 0.666201 | 3.4:+93362580 | MS.gene072905:CDS |
| AAGCTAGATTTGATACATGG+GGG | 0.682157 | 3.4:+93362581 | MS.gene072905:CDS |
| GACAAGAAAACCAAACAACA+AGG | 0.684649 | 3.4:-93362721 | None:intergenic |
| TTTGAATAAAAGAAACAGAG+AGG | 0.688795 | 3.4:-93362429 | None:intergenic |
| GGGTTGCACAGAAAGACATG+TGG | 0.690413 | 3.4:-93362270 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTGATTTTGTGATTTTT+GGG | + | chr3.4:93362797-93362816 | MS.gene072905:CDS | 15.0% |
| !!! | CATTTTGATTTTGTGATTTT+TGG | + | chr3.4:93362796-93362815 | MS.gene072905:CDS | 20.0% |
| ! | CTTGAATTCTCTTTCAAAAT+TGG | - | chr3.4:93362772-93362791 | None:intergenic | 25.0% |
| ! | TAGACAAAAAGATGTACAAT+TGG | + | chr3.4:93362221-93362240 | MS.gene072905:CDS | 25.0% |
| ! | TTATAATCATTCAAAGTTGC+AGG | + | chr3.4:93363014-93363033 | MS.gene072905:CDS | 25.0% |
| ! | TTTGAATAAAAGAAACAGAG+AGG | - | chr3.4:93362432-93362451 | None:intergenic | 25.0% |
| !!! | TTACACCCATTAATTTGTTT+GGG | + | chr3.4:93362962-93362981 | MS.gene072905:CDS | 25.0% |
| AAATCTTGCTTACATCCAAA+GGG | + | chr3.4:93362659-93362678 | MS.gene072905:CDS | 30.0% | |
| AACATGCTTTCCATTTCAAT+GGG | + | chr3.4:93362535-93362554 | MS.gene072905:CDS | 30.0% | |
| ACATAATACAAGGACGTAAT+CGG | - | chr3.4:93362697-93362716 | None:intergenic | 30.0% | |
| ACCATACCCAAACAAATTAA+TGG | - | chr3.4:93362971-93362990 | None:intergenic | 30.0% | |
| CCATACCCAAACAAATTAAT+GGG | - | chr3.4:93362970-93362989 | None:intergenic | 30.0% | |
| GATTTGAATCATAACCAATC+TGG | - | chr3.4:93362644-93362663 | None:intergenic | 30.0% | |
| TAACATGCTTTCCATTTCAA+TGG | + | chr3.4:93362534-93362553 | MS.gene072905:CDS | 30.0% | |
| TGAAGCTAGATTTGATACAT+GGG | + | chr3.4:93362579-93362598 | MS.gene072905:CDS | 30.0% | |
| ! | AATGGAAAGCATGTTAAACA+TGG | - | chr3.4:93362530-93362549 | None:intergenic | 30.0% |
| ! | TTTTTCATGGAGTGTGATTA+AGG | + | chr3.4:93362933-93362952 | MS.gene072905:CDS | 30.0% |
| !! | GTTACACCCATTAATTTGTT+TGG | + | chr3.4:93362961-93362980 | MS.gene072905:CDS | 30.0% |
| !!! | TTGCTGTTTTTCTTCTTGTT+GGG | + | chr3.4:93362851-93362870 | MS.gene072905:CDS | 30.0% |
| AACAGAGAGGTAAATGTAAG+CGG | - | chr3.4:93362419-93362438 | None:intergenic | 35.0% | |
| AAGACATGTGGATCATTGTT+AGG | - | chr3.4:93362261-93362280 | None:intergenic | 35.0% | |
| AAGCTAGATTTGATACATGG+GGG | + | chr3.4:93362581-93362600 | MS.gene072905:CDS | 35.0% | |
| ACAAGGTGCAACATAATACA+AGG | - | chr3.4:93362707-93362726 | None:intergenic | 35.0% | |
| AGACATGTGGATCATTGTTA+GGG | - | chr3.4:93362260-93362279 | None:intergenic | 35.0% | |
| ATTGTTAGGGAAATTGGGAA+TGG | - | chr3.4:93362247-93362266 | None:intergenic | 35.0% | |
| CAAATCTTGCTTACATCCAA+AGG | + | chr3.4:93362658-93362677 | MS.gene072905:CDS | 35.0% | |
| CACTCTATTCTCTTTCTCTT+TGG | + | chr3.4:93362383-93362402 | MS.gene072905:CDS | 35.0% | |
| GAAGCTAGATTTGATACATG+GGG | + | chr3.4:93362580-93362599 | MS.gene072905:CDS | 35.0% | |
| GACAAGAAAACCAAACAACA+AGG | - | chr3.4:93362724-93362743 | None:intergenic | 35.0% | |
| GGATCATTGTTAGGGAAATT+GGG | - | chr3.4:93362252-93362271 | None:intergenic | 35.0% | |
| GTGAAGCTAGATTTGATACA+TGG | + | chr3.4:93362578-93362597 | MS.gene072905:CDS | 35.0% | |
| TCAAAATTGGATACTCCACA+AGG | - | chr3.4:93362759-93362778 | None:intergenic | 35.0% | |
| TGGATCATTGTTAGGGAAAT+TGG | - | chr3.4:93362253-93362272 | None:intergenic | 35.0% | |
| !! | CCCATTAATTTGTTTGGGTA+TGG | + | chr3.4:93362967-93362986 | MS.gene072905:CDS | 35.0% |
| !! | TTATGTTGCACCTTGTTGTT+TGG | + | chr3.4:93362711-93362730 | MS.gene072905:CDS | 35.0% |
| !! | TTGCTGGTGTTGTTAAAGAT+TGG | + | chr3.4:93362899-93362918 | MS.gene072905:CDS | 35.0% |
| !!! | CTTGCTGTTTTTCTTCTTGT+TGG | + | chr3.4:93362850-93362869 | MS.gene072905:CDS | 35.0% |
| !!! | GGCTTTTGATTGCTTTTTCA+TGG | + | chr3.4:93362920-93362939 | MS.gene072905:CDS | 35.0% |
| AACAGCAACACCCATTGAAA+TGG | - | chr3.4:93362548-93362567 | None:intergenic | 40.0% | |
| AACTTCGCGAGACATTGAAA+CGG | - | chr3.4:93362335-93362354 | None:intergenic | 40.0% | |
| AAGCTGATGAAGAAACTGGA+AGG | + | chr3.4:93363073-93363092 | MS.gene072905:CDS | 40.0% | |
| ACACAAGCTGATGAAGAAAC+TGG | + | chr3.4:93363069-93363088 | MS.gene072905:CDS | 40.0% | |
| ACGAACGAGAAGAATAGCTA+GGG | - | chr3.4:93362293-93362312 | None:intergenic | 40.0% | |
| AGCTAGATTTGATACATGGG+GGG | + | chr3.4:93362582-93362601 | MS.gene072905:CDS | 40.0% | |
| CGGATTCAATGAAATCCCTT+TGG | - | chr3.4:93362677-93362696 | None:intergenic | 40.0% | |
| GCTTTGACAATGAATGTTGC+TGG | + | chr3.4:93362883-93362902 | MS.gene072905:CDS | 40.0% | |
| TTCAAAGTTGCAGGCACTTA+AGG | + | chr3.4:93363023-93363042 | MS.gene072905:CDS | 40.0% | |
| ! | TGGTTTTCTTGTCTGTTCCT+TGG | + | chr3.4:93362731-93362750 | MS.gene072905:CDS | 40.0% |
| !! | CCTGTTGCTGTTTATTCCAT+CGG | + | chr3.4:93362469-93362488 | MS.gene072905:CDS | 40.0% |
| AAAGGTGGATCTGTAAGCGA+TGG | + | chr3.4:93362109-93362128 | MS.gene072905:CDS | 45.0% | |
| ACTTCGCGAGACATTGAAAC+GGG | - | chr3.4:93362334-93362353 | None:intergenic | 45.0% | |
| AGAAACTGGAAGGTTGCTTG+AGG | + | chr3.4:93363083-93363102 | MS.gene072905:CDS | 45.0% | |
| AGGTTGCTTGAGGATAGAGA+AGG | + | chr3.4:93363093-93363112 | MS.gene072905:CDS | 45.0% | |
| CACGAACGAGAAGAATAGCT+AGG | - | chr3.4:93362294-93362313 | None:intergenic | 45.0% | |
| CCGATGGAATAAACAGCAAC+AGG | - | chr3.4:93362472-93362491 | None:intergenic | 45.0% | |
| CGTACACATACGTAGCGATA+TGG | + | chr3.4:93362155-93362174 | MS.gene072905:CDS | 45.0% | |
| CTCTCTTCCGTTGTTCCAAT+CGG | + | chr3.4:93362358-93362377 | MS.gene072905:CDS | 45.0% | |
| CTTGAGGATAGAGAAGGTGA+TGG | + | chr3.4:93363099-93363118 | MS.gene072905:CDS | 45.0% | |
| ! | AGAGAATAGAGTGCTCCGAT+TGG | - | chr3.4:93362376-93362395 | None:intergenic | 45.0% |
| ! | GGCTAAAGAAGCACAGAAGA+AGG | + | chr3.4:93363044-93363063 | MS.gene072905:CDS | 45.0% |
| ! | GGGTATGGTCTTGCTTTCTT+GGG | + | chr3.4:93362982-93363001 | MS.gene072905:CDS | 45.0% |
| ! | TGGGTATGGTCTTGCTTTCT+TGG | + | chr3.4:93362981-93363000 | MS.gene072905:CDS | 45.0% |
| !! | GATAGAGAAGGTGATGGATC+AGG | + | chr3.4:93363105-93363124 | MS.gene072905:CDS | 45.0% |
| !! | TGGGGGGTTATTTTACAGCT+TGG | + | chr3.4:93362598-93362617 | MS.gene072905:CDS | 45.0% |
| GAGTGCTCCGATTGGAACAA+CGG | - | chr3.4:93362368-93362387 | None:intergenic | 50.0% | |
| GCTGTTTATTCCATCGGCGT+TGG | + | chr3.4:93362475-93362494 | MS.gene072905:CDS | 50.0% | |
| GGATACTCCACAAGGATCCA+AGG | - | chr3.4:93362751-93362770 | None:intergenic | 50.0% | |
| GGGTTGCACAGAAAGACATG+TGG | - | chr3.4:93362273-93362292 | None:intergenic | 50.0% | |
| GTCTGTTCCTTGGATCCTTG+TGG | + | chr3.4:93362741-93362760 | MS.gene072905:CDS | 50.0% | |
| TGCTTTCGAAGCGACCAGAT+TGG | + | chr3.4:93362627-93362646 | MS.gene072905:CDS | 50.0% | |
| ! | TGGTCTTGCTTTCTTGGGTG+TGG | + | chr3.4:93362987-93363006 | MS.gene072905:CDS | 50.0% |
| ! | TTTTCTCAGACCAACGCCGA+TGG | - | chr3.4:93362488-93362507 | None:intergenic | 50.0% |
| !! | GGTGTTGCTGTTGCTGCTTA+TGG | + | chr3.4:93362556-93362575 | MS.gene072905:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 93362103 | 93363152 | 93362103 | ID=MS.gene072905 |
| chr3.4 | mRNA | 93362103 | 93363152 | 93362103 | ID=MS.gene072905.t1;Parent=MS.gene072905 |
| chr3.4 | exon | 93362103 | 93363152 | 93362103 | ID=MS.gene072905.t1.exon1;Parent=MS.gene072905.t1 |
| chr3.4 | CDS | 93362103 | 93363152 | 93362103 | ID=cds.MS.gene072905.t1;Parent=MS.gene072905.t1 |
| Gene Sequence |
| Protein sequence |
