Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049715.t1 | XP_003600668.2 | 98.2 | 511 | 8 | 1 | 16 | 525 | 1 | 511 | 2.10E-287 | 997.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049715.t1 | Q6P2Z6 | 46.3 | 497 | 246 | 10 | 30 | 516 | 13 | 498 | 3.8e-120 | 433.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049715.t1 | G7J8P2 | 98.2 | 511 | 8 | 1 | 16 | 525 | 1 | 511 | 1.5e-287 | 997.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049715 | MS.gene05011 | 0.987006 | 9.98E-169 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene015887 | MS.gene049715 | PPI |
| MS.gene021568 | MS.gene049715 | PPI |
| MS.gene54064 | MS.gene049715 | PPI |
| MS.gene86289 | MS.gene049715 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049715.t1 | MTR_3g064880 | 98.239 | 511 | 8 | 1 | 16 | 525 | 1 | 511 | 0.0 | 1043 |
| MS.gene049715.t1 | MTR_4g107030 | 71.183 | 465 | 73 | 7 | 10 | 464 | 1 | 414 | 0.0 | 651 |
| MS.gene049715.t1 | MTR_5g091890 | 59.901 | 404 | 157 | 3 | 28 | 429 | 14 | 414 | 1.12e-170 | 491 |
| MS.gene049715.t1 | MTR_5g089690 | 37.158 | 366 | 169 | 11 | 173 | 505 | 5 | 342 | 1.41e-58 | 198 |
| MS.gene049715.t1 | MTR_5g090460 | 38.053 | 339 | 165 | 11 | 180 | 502 | 23 | 332 | 8.29e-58 | 196 |
| MS.gene049715.t1 | MTR_5g091160 | 36.565 | 361 | 177 | 9 | 173 | 505 | 5 | 341 | 3.60e-57 | 194 |
| MS.gene049715.t1 | MTR_5g090030 | 40.647 | 278 | 139 | 5 | 228 | 502 | 23 | 277 | 1.04e-53 | 183 |
| MS.gene049715.t1 | MTR_5g011470 | 33.067 | 375 | 181 | 11 | 173 | 505 | 5 | 351 | 5.53e-50 | 175 |
| MS.gene049715.t1 | MTR_5g011640 | 33.067 | 375 | 181 | 11 | 173 | 505 | 5 | 351 | 8.55e-50 | 175 |
| MS.gene049715.t1 | MTR_5g006990 | 34.239 | 368 | 168 | 10 | 173 | 505 | 5 | 333 | 1.44e-49 | 174 |
| MS.gene049715.t1 | MTR_5g008620 | 36.335 | 322 | 141 | 9 | 175 | 471 | 7 | 289 | 3.85e-48 | 169 |
| MS.gene049715.t1 | MTR_5g092540 | 39.777 | 269 | 123 | 7 | 259 | 505 | 8 | 259 | 4.77e-48 | 167 |
| MS.gene049715.t1 | MTR_5g091490 | 34.000 | 350 | 165 | 10 | 180 | 505 | 15 | 322 | 3.52e-46 | 164 |
| MS.gene049715.t1 | MTR_8g442440 | 65.079 | 63 | 22 | 0 | 253 | 315 | 7 | 69 | 2.28e-21 | 89.0 |
| MS.gene049715.t1 | MTR_4g069000 | 32.778 | 180 | 79 | 4 | 321 | 472 | 31 | 196 | 1.30e-19 | 87.8 |
| MS.gene049715.t1 | MTR_0001s0160 | 73.684 | 38 | 10 | 0 | 266 | 303 | 40 | 77 | 1.39e-13 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049715.t1 | AT2G03820 | 64.752 | 505 | 158 | 6 | 19 | 512 | 6 | 501 | 0.0 | 689 |
Find 112 sgRNAs with CRISPR-Local
Find 123 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTAAAGCTGCTGCAATTT+TGG | 0.076449 | 3.3:+58492015 | MS.gene049715:CDS |
| TACCTTGAAGTTTGGTTTCT+TGG | 0.178636 | 3.3:+58492102 | MS.gene049715:CDS |
| TAGTAAATGCTGAGTTTATT+TGG | 0.211516 | 3.3:+58491522 | MS.gene049715:CDS |
| GTGGCCCGTGTGTCTGATTT+TGG | 0.235353 | 3.3:+58492265 | MS.gene049715:CDS |
| CCATGGGATGAGCTGCTAAC+TGG | 0.251884 | 3.3:+58492673 | MS.gene049715:CDS |
| CCCAAAATTGCAGCAGCTTT+AGG | 0.260285 | 3.3:-58492016 | None:intergenic |
| TTATCACTGCGGCTCTTAAC+AGG | 0.266910 | 3.3:-58491890 | None:intergenic |
| GATATGTTGAACCGCAATTC+AGG | 0.276469 | 3.3:-58492577 | None:intergenic |
| TTCTTTATCAAAACCACTTC+AGG | 0.282795 | 3.3:-58492421 | None:intergenic |
| ATGGTTTATAGTCTTTATTT+TGG | 0.301402 | 3.3:-58492606 | None:intergenic |
| AACCTTGACTTTAACCCTCT+TGG | 0.339925 | 3.3:-58491558 | None:intergenic |
| AATTAAATCCTCACGACAAA+TGG | 0.343202 | 3.3:-58491984 | None:intergenic |
| CACCGTGATAAACTTCCTTC+TGG | 0.344477 | 3.3:-58491586 | None:intergenic |
| CCCTGTTGAGTATGTTCAAC+AGG | 0.344627 | 3.3:+58491628 | MS.gene049715:CDS |
| ACAAAACACTGCCAATTGTT+TGG | 0.344709 | 3.3:-58491259 | None:intergenic |
| GCAGCTCCTTTGATTCTAAC+TGG | 0.347422 | 3.3:-58491445 | None:intergenic |
| ATTTGGAGCAGCTAATTCTA+AGG | 0.357779 | 3.3:+58491753 | MS.gene049715:CDS |
| GATCCACTTACCTTGAAGTT+TGG | 0.358412 | 3.3:+58492094 | MS.gene049715:CDS |
| ACACACATATTGGCTGCATT+TGG | 0.372787 | 3.3:-58491308 | None:intergenic |
| CAAACACTTCACACACATAT+TGG | 0.375834 | 3.3:-58491318 | None:intergenic |
| ATCAAGTTTGTTGAATTTGT+AGG | 0.382573 | 3.3:+58491857 | MS.gene049715:CDS |
| TCCTGTTGAACATACTCAAC+AGG | 0.387045 | 3.3:-58491629 | None:intergenic |
| GCTAGTAAGTAAAGACTTGA+AGG | 0.390432 | 3.3:-58492149 | None:intergenic |
| ATTAAATCCTCACGACAAAT+GGG | 0.404273 | 3.3:-58491983 | None:intergenic |
| GAAGAATATGAATATCAATA+AGG | 0.410544 | 3.3:+58491493 | MS.gene049715:CDS |
| ACTTGCAGCCACCGAGAACT+TGG | 0.411072 | 3.3:+58491414 | MS.gene049715:CDS |
| TCTTGGATGCTGAGCAGTAT+TGG | 0.423394 | 3.3:+58492119 | MS.gene049715:CDS |
| ACAGCAGCAATCCACTGATC+AGG | 0.432686 | 3.3:-58491689 | None:intergenic |
| CAACAGTAATGACATGGAAT+TGG | 0.439795 | 3.3:+58492378 | MS.gene049715:CDS |
| TCAAGTTTGTTGAATTTGTA+GGG | 0.441152 | 3.3:+58491858 | MS.gene049715:CDS |
| TTCATGGTTCACCAAACAAT+TGG | 0.446829 | 3.3:+58491248 | MS.gene049715:CDS |
| ATCCAAGAAACCAAACTTCA+AGG | 0.453254 | 3.3:-58492104 | None:intergenic |
| AAGCCTGGTGACAATGCTCT+TGG | 0.459127 | 3.3:+58492337 | MS.gene049715:CDS |
| TGTCACCAGGCTTTAAAAGA+TGG | 0.462708 | 3.3:-58492327 | None:intergenic |
| AGAAGGTTTACTTAAGCGTC+TGG | 0.462821 | 3.3:+58491361 | MS.gene049715:CDS |
| CATGGGATGAGCTGCTAACT+GGG | 0.463049 | 3.3:+58492674 | MS.gene049715:CDS |
| TGGAGTTTGACCCAAGTTCT+CGG | 0.467638 | 3.3:-58491425 | None:intergenic |
| CGAATACACCTGGCATGATA+AGG | 0.471281 | 3.3:-58491202 | None:intergenic |
| ACAAGAAGCCGGTATGTTCA+TGG | 0.472887 | 3.3:+58491232 | MS.gene049715:CDS |
| TCAGGCAACATGTCTCTCAT+AGG | 0.480355 | 3.3:+58491717 | MS.gene049715:CDS |
| ACCTTTGTGCAAATCACAAT+AGG | 0.483547 | 3.3:-58492049 | None:intergenic |
| AAGAGGCACCTTCTGTTCCA+TGG | 0.487115 | 3.3:+58492656 | MS.gene049715:CDS |
| AAACCAAACTTCAAGGTAAG+TGG | 0.487609 | 3.3:-58492097 | None:intergenic |
| AATCTTATCATCAGCCTCCA+TGG | 0.489948 | 3.3:-58492491 | None:intergenic |
| ACATGTGTGAATCTTGCTCT+AGG | 0.495050 | 3.3:+58491654 | MS.gene049715:CDS |
| ATATGTTGAACCGCAATTCA+GGG | 0.495410 | 3.3:-58492576 | None:intergenic |
| GGATTGCTGCTGTGCAACTC+AGG | 0.500369 | 3.3:+58491699 | MS.gene049715:CDS |
| CAATTCCATGTCATTACTGT+TGG | 0.507714 | 3.3:-58492377 | None:intergenic |
| ACTTTAACCCTCTTGGAATG+TGG | 0.508963 | 3.3:-58491551 | None:intergenic |
| TTCCAAGAGGGTTAAAGTCA+AGG | 0.516159 | 3.3:+58491556 | MS.gene049715:CDS |
| CAAAGGAAATATTCCTGAAG+TGG | 0.521150 | 3.3:+58492408 | MS.gene049715:CDS |
| CAAACTCCAGTTAGAATCAA+AGG | 0.528303 | 3.3:+58491439 | MS.gene049715:CDS |
| ATCTTATCATCAGCCTCCAT+GGG | 0.529967 | 3.3:-58492490 | None:intergenic |
| ACTTACTAGCAGACAGTTGG+TGG | 0.535891 | 3.3:+58492162 | MS.gene049715:CDS |
| TTCGAGATGGCACAAGAAGC+CGG | 0.536000 | 3.3:+58491221 | MS.gene049715:CDS |
| TATCACTGCGGCTCTTAACA+GGG | 0.537830 | 3.3:-58491889 | None:intergenic |
| GTTTCATCTGAGGTTAATGT+CGG | 0.547286 | 3.3:+58492211 | MS.gene049715:CDS |
| TCCTATTGTGATTTGCACAA+AGG | 0.549668 | 3.3:+58492048 | MS.gene049715:CDS |
| TGCTATCAGAATCAAACAGA+TGG | 0.550633 | 3.3:+58491793 | MS.gene049715:CDS |
| GTCACAGATGCCACCTCTGA+TGG | 0.553868 | 3.3:-58492625 | None:intergenic |
| TTTACTTACTAGCAGACAGT+TGG | 0.553886 | 3.3:+58492159 | MS.gene049715:CDS |
| GGAGTATATAGTGTTGGATG+TGG | 0.554292 | 3.3:+58492183 | MS.gene049715:CDS |
| AGCTCATCCCATGGAACAGA+AGG | 0.555245 | 3.3:-58492664 | None:intergenic |
| GTTGGTGGAGTATATAGTGT+TGG | 0.555889 | 3.3:+58492177 | MS.gene049715:CDS |
| AGTCAAGGTTAGTGTCCAGA+AGG | 0.557071 | 3.3:+58491571 | MS.gene049715:CDS |
| TGGATGCTGAGCAGTATTGG+AGG | 0.562084 | 3.3:+58492122 | MS.gene049715:CDS |
| TATTTCTCTAATCGAAGTCA+TGG | 0.564179 | 3.3:+58491833 | MS.gene049715:CDS |
| AAAATTGCAGCAGCTTTAGG+AGG | 0.569697 | 3.3:-58492013 | None:intergenic |
| TCATCTGAGGTTAATGTCGG+TGG | 0.574369 | 3.3:+58492214 | MS.gene049715:CDS |
| CTTGCAGCCACCGAGAACTT+GGG | 0.577871 | 3.3:+58491415 | MS.gene049715:CDS |
| TCTTGACCTGAGTGAGGGTG+AGG | 0.578174 | 3.3:+58492705 | MS.gene049715:CDS |
| TGAAGATCTTGACCTGAGTG+AGG | 0.582777 | 3.3:+58492699 | MS.gene049715:CDS |
| GTAATGACATGGAATTGGAC+AGG | 0.584948 | 3.3:+58492383 | MS.gene049715:CDS |
| AGAGGCACCTTCTGTTCCAT+GGG | 0.589082 | 3.3:+58492657 | MS.gene049715:CDS |
| TAACCAAGAGCATTGTCACC+AGG | 0.592121 | 3.3:-58492340 | None:intergenic |
| TCAGAAGTTGATATCACAGA+AGG | 0.594668 | 3.3:+58491344 | MS.gene049715:CDS |
| CAGCAGCAATCCACTGATCA+GGG | 0.600518 | 3.3:-58491688 | None:intergenic |
| TGCAAGTAACTTTCACACTC+AGG | 0.606381 | 3.3:-58491398 | None:intergenic |
| TAAGCTTAGACGAATTCCCA+TGG | 0.606545 | 3.3:+58492474 | MS.gene049715:CDS |
| TTGGTGAACCATGAACATAC+CGG | 0.608208 | 3.3:-58491240 | None:intergenic |
| TGTGGAAGTTGTTTCATCTG+AGG | 0.609866 | 3.3:+58492201 | MS.gene049715:CDS |
| CGTCACCCTCACCCTCACTC+AGG | 0.610173 | 3.3:-58492711 | None:intergenic |
| CATGCCAGGTGTATTCGAGA+TGG | 0.613849 | 3.3:+58491208 | MS.gene049715:CDS |
| GACAGAGCCACATTCCAAGA+GGG | 0.613937 | 3.3:+58491544 | MS.gene049715:CDS |
| CATGTGTGAATCTTGCTCTA+GGG | 0.616216 | 3.3:+58491655 | MS.gene049715:CDS |
| ATGGAATTGGACAGGTACAA+AGG | 0.618324 | 3.3:+58492391 | MS.gene049715:CDS |
| TAAAGACTATAAACCATCAG+AGG | 0.619453 | 3.3:+58492612 | MS.gene049715:CDS |
| ATCTGTGACTGATGGTGAAG+AGG | 0.622293 | 3.3:+58492639 | MS.gene049715:CDS |
| TGTGCCATCTCGAATACACC+TGG | 0.626683 | 3.3:-58491212 | None:intergenic |
| TTGCAGCTAACCCTGATCAG+TGG | 0.627759 | 3.3:+58491678 | MS.gene049715:CDS |
| AATCAGCCCCATTTGTCGTG+AGG | 0.628298 | 3.3:+58491976 | MS.gene049715:CDS |
| AGAATCAAACAGATGGATCA+CGG | 0.628536 | 3.3:+58491800 | MS.gene049715:CDS |
| TGACGATGGCGACAATAACA+TGG | 0.629002 | 3.3:+58492729 | MS.gene049715:CDS |
| GAGCAGCTAATTCTAAGGCA+TGG | 0.629905 | 3.3:+58491758 | MS.gene049715:CDS |
| TCTTTCCAAAATCAGACACA+CGG | 0.630186 | 3.3:-58492270 | None:intergenic |
| CCTGTTGAACATACTCAACA+GGG | 0.631414 | 3.3:-58491628 | None:intergenic |
| GTCCAGAAGGAAGTTTATCA+CGG | 0.638671 | 3.3:+58491584 | MS.gene049715:CDS |
| CCAGTTAGCAGCTCATCCCA+TGG | 0.638758 | 3.3:-58492673 | None:intergenic |
| AGACTATAAACCATCAGAGG+TGG | 0.640889 | 3.3:+58492615 | MS.gene049715:CDS |
| GAAGATCTTGACCTGAGTGA+GGG | 0.645915 | 3.3:+58492700 | MS.gene049715:CDS |
| CTTGACCTGAGTGAGGGTGA+GGG | 0.653187 | 3.3:+58492706 | MS.gene049715:CDS |
| TTAAATCCTCACGACAAATG+GGG | 0.655192 | 3.3:-58491982 | None:intergenic |
| GAGGTGGCATCTGTGACTGA+TGG | 0.659070 | 3.3:+58492631 | MS.gene049715:CDS |
| TGCTGCCAACAGTAATGACA+TGG | 0.662782 | 3.3:+58492372 | MS.gene049715:CDS |
| GGACAGAGCCACATTCCAAG+AGG | 0.662883 | 3.3:+58491543 | MS.gene049715:CDS |
| AGTGAGGGTGAGGGTGACGA+TGG | 0.666340 | 3.3:+58492715 | MS.gene049715:CDS |
| CTTTCCAAAATCAGACACAC+GGG | 0.666389 | 3.3:-58492269 | None:intergenic |
| TAGAAGAAAACCCTGAATTG+CGG | 0.680446 | 3.3:+58492566 | MS.gene049715:CDS |
| ATCACTGCGGCTCTTAACAG+GGG | 0.691399 | 3.3:-58491888 | None:intergenic |
| AGTTTGACCCAAGTTCTCGG+TGG | 0.706073 | 3.3:-58491422 | None:intergenic |
| GCTTAGACGAATTCCCATGG+AGG | 0.746816 | 3.3:+58492477 | MS.gene049715:CDS |
| AAACAAGTTGCTTATCACTG+CGG | 0.764201 | 3.3:-58491901 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAGAATATGAATATCAATA+AGG | + | chr3.3:58491493-58491512 | MS.gene049715:CDS | 20.0% |
| !!! | ATGGTTTATAGTCTTTATTT+TGG | - | chr3.3:58492609-58492628 | None:intergenic | 20.0% |
| ! | TAGTAAATGCTGAGTTTATT+TGG | + | chr3.3:58491522-58491541 | MS.gene049715:CDS | 25.0% |
| !! | TTATAAGTACACATTTTCTG+TGG | + | chr3.3:58491952-58491971 | MS.gene049715:CDS | 25.0% |
| !! | TTTTCTATCAGAACTCATTT+GGG | + | chr3.3:58492304-58492323 | MS.gene049715:CDS | 25.0% |
| !!! | ATCAAGTTTGTTGAATTTGT+AGG | + | chr3.3:58491857-58491876 | MS.gene049715:CDS | 25.0% |
| !!! | TCAAGTTTGTTGAATTTGTA+GGG | + | chr3.3:58491858-58491877 | MS.gene049715:CDS | 25.0% |
| AATTAAATCCTCACGACAAA+TGG | - | chr3.3:58491987-58492006 | None:intergenic | 30.0% | |
| ATTAAATCCTCACGACAAAT+GGG | - | chr3.3:58491986-58492005 | None:intergenic | 30.0% | |
| TAAAGACTATAAACCATCAG+AGG | + | chr3.3:58492612-58492631 | MS.gene049715:CDS | 30.0% | |
| TATTTCTCTAATCGAAGTCA+TGG | + | chr3.3:58491833-58491852 | MS.gene049715:CDS | 30.0% | |
| TTCTTTATCAAAACCACTTC+AGG | - | chr3.3:58492424-58492443 | None:intergenic | 30.0% | |
| ! | GTTTTCTATCAGAACTCATT+TGG | + | chr3.3:58492303-58492322 | MS.gene049715:CDS | 30.0% |
| !! | TAGGCGTACTTTTTACTATT+TGG | + | chr3.3:58491736-58491755 | MS.gene049715:CDS | 30.0% |
| AAACAAGTTGCTTATCACTG+CGG | - | chr3.3:58491904-58491923 | None:intergenic | 35.0% | |
| AAACCAAACTTCAAGGTAAG+TGG | - | chr3.3:58492100-58492119 | None:intergenic | 35.0% | |
| ACAAAACACTGCCAATTGTT+TGG | - | chr3.3:58491262-58491281 | None:intergenic | 35.0% | |
| ACCTTTGTGCAAATCACAAT+AGG | - | chr3.3:58492052-58492071 | None:intergenic | 35.0% | |
| AGAATCAAACAGATGGATCA+CGG | + | chr3.3:58491800-58491819 | MS.gene049715:CDS | 35.0% | |
| ATATGTTGAACCGCAATTCA+GGG | - | chr3.3:58492579-58492598 | None:intergenic | 35.0% | |
| ATCCAAGAAACCAAACTTCA+AGG | - | chr3.3:58492107-58492126 | None:intergenic | 35.0% | |
| CAAACACTTCACACACATAT+TGG | - | chr3.3:58491321-58491340 | None:intergenic | 35.0% | |
| CAAACTCCAGTTAGAATCAA+AGG | + | chr3.3:58491439-58491458 | MS.gene049715:CDS | 35.0% | |
| CAAAGGAAATATTCCTGAAG+TGG | + | chr3.3:58492408-58492427 | MS.gene049715:CDS | 35.0% | |
| CAACAGTAATGACATGGAAT+TGG | + | chr3.3:58492378-58492397 | MS.gene049715:CDS | 35.0% | |
| CAATTCCATGTCATTACTGT+TGG | - | chr3.3:58492380-58492399 | None:intergenic | 35.0% | |
| GCTAGTAAGTAAAGACTTGA+AGG | - | chr3.3:58492152-58492171 | None:intergenic | 35.0% | |
| TAGAAGAAAACCCTGAATTG+CGG | + | chr3.3:58492566-58492585 | MS.gene049715:CDS | 35.0% | |
| TCTTTCCAAAATCAGACACA+CGG | - | chr3.3:58492273-58492292 | None:intergenic | 35.0% | |
| TGCTATCAGAATCAAACAGA+TGG | + | chr3.3:58491793-58491812 | MS.gene049715:CDS | 35.0% | |
| TTAAATCCTCACGACAAATG+GGG | - | chr3.3:58491985-58492004 | None:intergenic | 35.0% | |
| TTCATGGTTCACCAAACAAT+TGG | + | chr3.3:58491248-58491267 | MS.gene049715:CDS | 35.0% | |
| TTTACTTACTAGCAGACAGT+TGG | + | chr3.3:58492159-58492178 | MS.gene049715:CDS | 35.0% | |
| ! | AGTGTTTTGTGTTGCAAATG+TGG | + | chr3.3:58491272-58491291 | MS.gene049715:CDS | 35.0% |
| ! | ATTTGGAGCAGCTAATTCTA+AGG | + | chr3.3:58491753-58491772 | MS.gene049715:CDS | 35.0% |
| ! | GTGTTTTGTGTTGCAAATGT+GGG | + | chr3.3:58491273-58491292 | MS.gene049715:CDS | 35.0% |
| ! | GTTTCATCTGAGGTTAATGT+CGG | + | chr3.3:58492211-58492230 | MS.gene049715:CDS | 35.0% |
| ! | TACCTTGAAGTTTGGTTTCT+TGG | + | chr3.3:58492102-58492121 | MS.gene049715:CDS | 35.0% |
| ! | TCCTATTGTGATTTGCACAA+AGG | + | chr3.3:58492048-58492067 | MS.gene049715:CDS | 35.0% |
| ! | TTTTTGTTCCTTATCATGCC+AGG | + | chr3.3:58491194-58491213 | MS.gene049715:CDS | 35.0% |
| !! | GCTGCAATTTTGGGAAATAT+CGG | + | chr3.3:58492025-58492044 | MS.gene049715:CDS | 35.0% |
| !! | TCAGAAGTTGATATCACAGA+AGG | + | chr3.3:58491344-58491363 | MS.gene049715:CDS | 35.0% |
| AACCTTGACTTTAACCCTCT+TGG | - | chr3.3:58491561-58491580 | None:intergenic | 40.0% | |
| AATCTTATCATCAGCCTCCA+TGG | - | chr3.3:58492494-58492513 | None:intergenic | 40.0% | |
| ACATGTGTGAATCTTGCTCT+AGG | + | chr3.3:58491654-58491673 | MS.gene049715:CDS | 40.0% | |
| ACTTTAACCCTCTTGGAATG+TGG | - | chr3.3:58491554-58491573 | None:intergenic | 40.0% | |
| AGAAGGTTTACTTAAGCGTC+TGG | + | chr3.3:58491361-58491380 | MS.gene049715:CDS | 40.0% | |
| AGACTATAAACCATCAGAGG+TGG | + | chr3.3:58492615-58492634 | MS.gene049715:CDS | 40.0% | |
| ATCTTATCATCAGCCTCCAT+GGG | - | chr3.3:58492493-58492512 | None:intergenic | 40.0% | |
| ATGGAATTGGACAGGTACAA+AGG | + | chr3.3:58492391-58492410 | MS.gene049715:CDS | 40.0% | |
| CATGTGTGAATCTTGCTCTA+GGG | + | chr3.3:58491655-58491674 | MS.gene049715:CDS | 40.0% | |
| CCTGTTGAACATACTCAACA+GGG | - | chr3.3:58491631-58491650 | None:intergenic | 40.0% | |
| CTTTCCAAAATCAGACACAC+GGG | - | chr3.3:58492272-58492291 | None:intergenic | 40.0% | |
| GATATGTTGAACCGCAATTC+AGG | - | chr3.3:58492580-58492599 | None:intergenic | 40.0% | |
| GATCCACTTACCTTGAAGTT+TGG | + | chr3.3:58492094-58492113 | MS.gene049715:CDS | 40.0% | |
| GTAATGACATGGAATTGGAC+AGG | + | chr3.3:58492383-58492402 | MS.gene049715:CDS | 40.0% | |
| GTCCAGAAGGAAGTTTATCA+CGG | + | chr3.3:58491584-58491603 | MS.gene049715:CDS | 40.0% | |
| TAAGCTTAGACGAATTCCCA+TGG | + | chr3.3:58492474-58492493 | MS.gene049715:CDS | 40.0% | |
| TCCTGTTGAACATACTCAAC+AGG | - | chr3.3:58491632-58491651 | None:intergenic | 40.0% | |
| TGCAAGTAACTTTCACACTC+AGG | - | chr3.3:58491401-58491420 | None:intergenic | 40.0% | |
| TTCCAAGAGGGTTAAAGTCA+AGG | + | chr3.3:58491556-58491575 | MS.gene049715:CDS | 40.0% | |
| TTGGTGAACCATGAACATAC+CGG | - | chr3.3:58491243-58491262 | None:intergenic | 40.0% | |
| ! | ACACACATATTGGCTGCATT+TGG | - | chr3.3:58491311-58491330 | None:intergenic | 40.0% |
| ! | CCTAAAGCTGCTGCAATTTT+GGG | + | chr3.3:58492016-58492035 | MS.gene049715:CDS | 40.0% |
| ! | GGAGTATATAGTGTTGGATG+TGG | + | chr3.3:58492183-58492202 | MS.gene049715:CDS | 40.0% |
| ! | GTTGGTGGAGTATATAGTGT+TGG | + | chr3.3:58492177-58492196 | MS.gene049715:CDS | 40.0% |
| ! | TCCTAAAGCTGCTGCAATTT+TGG | + | chr3.3:58492015-58492034 | MS.gene049715:CDS | 40.0% |
| ! | TGTGGAAGTTGTTTCATCTG+AGG | + | chr3.3:58492201-58492220 | MS.gene049715:CDS | 40.0% |
| !! | AAAATTGCAGCAGCTTTAGG+AGG | - | chr3.3:58492016-58492035 | None:intergenic | 40.0% |
| !! | TGTCACCAGGCTTTAAAAGA+TGG | - | chr3.3:58492330-58492349 | None:intergenic | 40.0% |
| !!! | TGTTTTAGCTGATGCTCAAG+TGG | + | chr3.3:58492246-58492265 | MS.gene049715:CDS | 40.0% |
| ACAAGAAGCCGGTATGTTCA+TGG | + | chr3.3:58491232-58491251 | MS.gene049715:CDS | 45.0% | |
| ACTTACTAGCAGACAGTTGG+TGG | + | chr3.3:58492162-58492181 | MS.gene049715:CDS | 45.0% | |
| AGTCAAGGTTAGTGTCCAGA+AGG | + | chr3.3:58491571-58491590 | MS.gene049715:CDS | 45.0% | |
| CACCGTGATAAACTTCCTTC+TGG | - | chr3.3:58491589-58491608 | None:intergenic | 45.0% | |
| CCCAAAATTGCAGCAGCTTT+AGG | - | chr3.3:58492019-58492038 | None:intergenic | 45.0% | |
| CCCTGTTGAGTATGTTCAAC+AGG | + | chr3.3:58491628-58491647 | MS.gene049715:CDS | 45.0% | |
| CGAATACACCTGGCATGATA+AGG | - | chr3.3:58491205-58491224 | None:intergenic | 45.0% | |
| GAAGATCTTGACCTGAGTGA+GGG | + | chr3.3:58492700-58492719 | MS.gene049715:CDS | 45.0% | |
| GCAGCTCCTTTGATTCTAAC+TGG | - | chr3.3:58491448-58491467 | None:intergenic | 45.0% | |
| TATCACTGCGGCTCTTAACA+GGG | - | chr3.3:58491892-58491911 | None:intergenic | 45.0% | |
| TCAGGCAACATGTCTCTCAT+AGG | + | chr3.3:58491717-58491736 | MS.gene049715:CDS | 45.0% | |
| TCTTGGATGCTGAGCAGTAT+TGG | + | chr3.3:58492119-58492138 | MS.gene049715:CDS | 45.0% | |
| TGAAGATCTTGACCTGAGTG+AGG | + | chr3.3:58492699-58492718 | MS.gene049715:CDS | 45.0% | |
| TGACGATGGCGACAATAACA+TGG | + | chr3.3:58492729-58492748 | MS.gene049715:CDS | 45.0% | |
| TGCTGCCAACAGTAATGACA+TGG | + | chr3.3:58492372-58492391 | MS.gene049715:CDS | 45.0% | |
| TGGAGTTTGACCCAAGTTCT+CGG | - | chr3.3:58491428-58491447 | None:intergenic | 45.0% | |
| TTATCACTGCGGCTCTTAAC+AGG | - | chr3.3:58491893-58491912 | None:intergenic | 45.0% | |
| ! | ATCTGTGACTGATGGTGAAG+AGG | + | chr3.3:58492639-58492658 | MS.gene049715:CDS | 45.0% |
| ! | TCATCTGAGGTTAATGTCGG+TGG | + | chr3.3:58492214-58492233 | MS.gene049715:CDS | 45.0% |
| !! | GAGCAGCTAATTCTAAGGCA+TGG | + | chr3.3:58491758-58491777 | MS.gene049715:CDS | 45.0% |
| !! | TAACCAAGAGCATTGTCACC+AGG | - | chr3.3:58492343-58492362 | None:intergenic | 45.0% |
| !!! | TTGGGCCATCTTTTAAAGCC+TGG | + | chr3.3:58492322-58492341 | MS.gene049715:CDS | 45.0% |
| AAGCCTGGTGACAATGCTCT+TGG | + | chr3.3:58492337-58492356 | MS.gene049715:CDS | 50.0% | |
| AATCAGCCCCATTTGTCGTG+AGG | + | chr3.3:58491976-58491995 | MS.gene049715:CDS | 50.0% | |
| ACAGCAGCAATCCACTGATC+AGG | - | chr3.3:58491692-58491711 | None:intergenic | 50.0% | |
| AGCTCATCCCATGGAACAGA+AGG | - | chr3.3:58492667-58492686 | None:intergenic | 50.0% | |
| AGTTTGACCCAAGTTCTCGG+TGG | - | chr3.3:58491425-58491444 | None:intergenic | 50.0% | |
| ATCACTGCGGCTCTTAACAG+GGG | - | chr3.3:58491891-58491910 | None:intergenic | 50.0% | |
| CAGCAGCAATCCACTGATCA+GGG | - | chr3.3:58491691-58491710 | None:intergenic | 50.0% | |
| CATGCCAGGTGTATTCGAGA+TGG | + | chr3.3:58491208-58491227 | MS.gene049715:CDS | 50.0% | |
| CATGGGATGAGCTGCTAACT+GGG | + | chr3.3:58492674-58492693 | MS.gene049715:CDS | 50.0% | |
| GACAGAGCCACATTCCAAGA+GGG | + | chr3.3:58491544-58491563 | MS.gene049715:CDS | 50.0% | |
| GCTTAGACGAATTCCCATGG+AGG | + | chr3.3:58492477-58492496 | MS.gene049715:CDS | 50.0% | |
| TGTGCCATCTCGAATACACC+TGG | - | chr3.3:58491215-58491234 | None:intergenic | 50.0% | |
| TTCGAGATGGCACAAGAAGC+CGG | + | chr3.3:58491221-58491240 | MS.gene049715:CDS | 50.0% | |
| TTGCAGCTAACCCTGATCAG+TGG | + | chr3.3:58491678-58491697 | MS.gene049715:CDS | 50.0% | |
| ! | TGGATGCTGAGCAGTATTGG+AGG | + | chr3.3:58492122-58492141 | MS.gene049715:CDS | 50.0% |
| !! | AAGAGGCACCTTCTGTTCCA+TGG | + | chr3.3:58492656-58492675 | MS.gene049715:CDS | 50.0% |
| !! | AGAGGCACCTTCTGTTCCAT+GGG | + | chr3.3:58492657-58492676 | MS.gene049715:CDS | 50.0% |
| ACTTGCAGCCACCGAGAACT+TGG | + | chr3.3:58491414-58491433 | MS.gene049715:CDS | 55.0% | |
| CCAGTTAGCAGCTCATCCCA+TGG | - | chr3.3:58492676-58492695 | None:intergenic | 55.0% | |
| CCATGGGATGAGCTGCTAAC+TGG | + | chr3.3:58492673-58492692 | MS.gene049715:CDS | 55.0% | |
| CTTGACCTGAGTGAGGGTGA+GGG | + | chr3.3:58492706-58492725 | MS.gene049715:CDS | 55.0% | |
| CTTGCAGCCACCGAGAACTT+GGG | + | chr3.3:58491415-58491434 | MS.gene049715:CDS | 55.0% | |
| GAGGTGGCATCTGTGACTGA+TGG | + | chr3.3:58492631-58492650 | MS.gene049715:CDS | 55.0% | |
| GGACAGAGCCACATTCCAAG+AGG | + | chr3.3:58491543-58491562 | MS.gene049715:CDS | 55.0% | |
| GGATTGCTGCTGTGCAACTC+AGG | + | chr3.3:58491699-58491718 | MS.gene049715:CDS | 55.0% | |
| GTCACAGATGCCACCTCTGA+TGG | - | chr3.3:58492628-58492647 | None:intergenic | 55.0% | |
| TCTTGACCTGAGTGAGGGTG+AGG | + | chr3.3:58492705-58492724 | MS.gene049715:CDS | 55.0% | |
| ! | GTGGCCCGTGTGTCTGATTT+TGG | + | chr3.3:58492265-58492284 | MS.gene049715:CDS | 55.0% |
| AGTGAGGGTGAGGGTGACGA+TGG | + | chr3.3:58492715-58492734 | MS.gene049715:CDS | 60.0% | |
| CGTCACCCTCACCCTCACTC+AGG | - | chr3.3:58492714-58492733 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 58491182 | 58492759 | 58491182 | ID=MS.gene049715 |
| chr3.3 | mRNA | 58491182 | 58492759 | 58491182 | ID=MS.gene049715.t1;Parent=MS.gene049715 |
| chr3.3 | exon | 58491182 | 58492759 | 58491182 | ID=MS.gene049715.t1.exon1;Parent=MS.gene049715.t1 |
| chr3.3 | CDS | 58491182 | 58492759 | 58491182 | ID=cds.MS.gene049715.t1;Parent=MS.gene049715.t1 |
| Gene Sequence |
| Protein sequence |
