Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050886.t1 | XP_003626273.1 | 97.8 | 489 | 11 | 0 | 1 | 489 | 1 | 489 | 9.70E-263 | 915.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050886.t1 | Q9SVT8 | 76.6 | 478 | 107 | 2 | 2 | 474 | 3 | 480 | 4.3e-203 | 708.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050886.t1 | G7KYM3 | 97.8 | 489 | 11 | 0 | 1 | 489 | 1 | 489 | 7.0e-263 | 915.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene050886 | MS.gene005054 | PPI |
| MS.gene050886 | MS.gene058774 | PPI |
| MS.gene050886 | MS.gene005052 | PPI |
| MS.gene050886 | MS.gene74897 | PPI |
| MS.gene07605 | MS.gene050886 | PPI |
| MS.gene050886 | MS.gene058775 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050886.t1 | MTR_7g113340 | 97.751 | 489 | 11 | 0 | 1 | 489 | 1 | 489 | 0.0 | 967 |
| MS.gene050886.t1 | MTR_7g098930 | 90.000 | 490 | 48 | 1 | 1 | 489 | 1 | 490 | 0.0 | 884 |
| MS.gene050886.t1 | MTR_1g045550 | 73.849 | 478 | 123 | 2 | 1 | 477 | 1 | 477 | 0.0 | 728 |
| MS.gene050886.t1 | MTR_1g079760 | 72.393 | 489 | 129 | 3 | 1 | 485 | 1 | 487 | 0.0 | 699 |
| MS.gene050886.t1 | MTR_3g463730 | 65.169 | 445 | 148 | 5 | 41 | 483 | 8 | 447 | 0.0 | 572 |
| MS.gene050886.t1 | MTR_7g115050 | 28.535 | 396 | 229 | 16 | 112 | 489 | 100 | 459 | 1.58e-23 | 103 |
| MS.gene050886.t1 | MTR_1g036410 | 26.226 | 469 | 279 | 17 | 47 | 486 | 24 | 454 | 1.00e-20 | 95.1 |
| MS.gene050886.t1 | MTR_8g074750 | 25.546 | 458 | 281 | 14 | 47 | 480 | 30 | 451 | 5.65e-18 | 86.7 |
| MS.gene050886.t1 | MTR_7g069640 | 26.954 | 371 | 226 | 10 | 123 | 485 | 129 | 462 | 5.28e-14 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050886.t1 | AT4G13510 | 72.594 | 478 | 127 | 3 | 5 | 481 | 2 | 476 | 0.0 | 728 |
| MS.gene050886.t1 | AT4G28700 | 75.941 | 478 | 110 | 2 | 2 | 474 | 3 | 480 | 0.0 | 720 |
| MS.gene050886.t1 | AT3G24290 | 73.319 | 476 | 124 | 2 | 5 | 480 | 6 | 478 | 0.0 | 720 |
| MS.gene050886.t1 | AT3G24300 | 71.667 | 480 | 132 | 3 | 5 | 483 | 6 | 482 | 0.0 | 712 |
| MS.gene050886.t1 | AT1G64780 | 71.984 | 489 | 128 | 5 | 2 | 483 | 4 | 490 | 0.0 | 698 |
| MS.gene050886.t1 | AT2G38290 | 26.395 | 466 | 279 | 15 | 47 | 485 | 20 | 448 | 4.54e-15 | 77.8 |
| MS.gene050886.t1 | AT2G38290 | 27.869 | 366 | 215 | 12 | 135 | 488 | 7 | 335 | 2.46e-13 | 71.6 |
Find 109 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTAATATTGTAAAAGCTTA+TGG | 0.207812 | 7.1:+3052675 | MS.gene050886:CDS |
| TGCACATGTTGTTCAGATTT+TGG | 0.224055 | 7.1:+3053136 | MS.gene050886:CDS |
| GGTTCTCCTGATAGACCTTA+TGG | 0.231859 | 7.1:+3053080 | MS.gene050886:CDS |
| TTCATGGTGGTTGTGGTACT+TGG | 0.252134 | 7.1:+3053000 | MS.gene050886:CDS |
| CGATTGTTGCTCATTGGTTT+TGG | 0.263369 | 7.1:+3052391 | MS.gene050886:CDS |
| TAGTGGTACTTTAGTTGTTT+TGG | 0.264485 | 7.1:+3052602 | MS.gene050886:CDS |
| TACTTCAAATGCACGTCTTT+TGG | 0.271844 | 7.1:-3053318 | None:intergenic |
| TATGTGAATGAAGTTTATTC+TGG | 0.286396 | 7.1:+3053059 | MS.gene050886:CDS |
| GTACCACTATGTCCTCTAAT+TGG | 0.291911 | 7.1:-3052588 | None:intergenic |
| GGGAGGTGGTGGAAGATTAT+TGG | 0.298602 | 7.1:+3053112 | MS.gene050886:CDS |
| CATTTAGTTGGTGCTGTTGC+TGG | 0.308317 | 7.1:+3052501 | MS.gene050886:CDS |
| TATGGTCAATGGAGTGCTAT+TGG | 0.327941 | 7.1:+3052714 | MS.gene050886:CDS |
| TGCTTGGGTGAGTATTACTA+TGG | 0.328895 | 7.1:+3053166 | MS.gene050886:CDS |
| TGGCAAAAGCCCATTGAAAA+AGG | 0.329634 | 7.1:-3052272 | None:intergenic |
| TGATCAAATCTACCAATTCT+TGG | 0.336025 | 7.1:-3052549 | None:intergenic |
| AACAATCCATAAGGTCTATC+AGG | 0.338141 | 7.1:-3053086 | None:intergenic |
| CTTGAAGCTGCACAACTTCA+TGG | 0.342709 | 7.1:+3052984 | MS.gene050886:CDS |
| GCAGCTCTCACTACTTTGTT+TGG | 0.346350 | 7.1:+3052774 | MS.gene050886:CDS |
| TGTGGTGTTGTTCATTTAGT+TGG | 0.354549 | 7.1:+3052489 | MS.gene050886:CDS |
| TTGTGGATTTGTTGCTGCTT+GGG | 0.357633 | 7.1:+3052911 | MS.gene050886:CDS |
| TCATGGTGGTTGTGGTACTT+GGG | 0.382463 | 7.1:+3053001 | MS.gene050886:CDS |
| CCATGGGCTGCAATTATTTG+TGG | 0.385626 | 7.1:+3052894 | MS.gene050886:CDS |
| TTTATCCGATTGTTGCTCAT+TGG | 0.385751 | 7.1:+3052385 | MS.gene050886:CDS |
| CGAGGTAGAGATGGAAGGTT+TGG | 0.387091 | 7.1:+3053238 | MS.gene050886:CDS |
| TTACTTTGGTTTGGTTGGTA+TGG | 0.390915 | 7.1:+3052633 | MS.gene050886:CDS |
| ATTGGTTAACATAATGTTCA+TGG | 0.391374 | 7.1:-3052106 | None:intergenic |
| GGATTGTTGTTGGGAGGTGG+TGG | 0.409187 | 7.1:+3053101 | MS.gene050886:CDS |
| GTGGAGGTCGGAGGCGGAAC+AGG | 0.409952 | 7.1:-3051887 | None:intergenic |
| GGTGTTCTGTTGTGGATCCA+TGG | 0.413692 | 7.1:+3052877 | MS.gene050886:CDS |
| TTTGTGGATTTGTTGCTGCT+TGG | 0.421882 | 7.1:+3052910 | MS.gene050886:CDS |
| AATGTTCTTGATGCCGCAAT+AGG | 0.425840 | 7.1:+3052126 | MS.gene050886:CDS |
| TTTATTGAAGGACCAAGAAT+TGG | 0.431351 | 7.1:+3052537 | MS.gene050886:CDS |
| TTTGGTAAACGTATGCAAAC+AGG | 0.437183 | 7.1:+3052792 | MS.gene050886:CDS |
| GGTGAAAGTGTTCCAATTAG+AGG | 0.441579 | 7.1:+3052576 | MS.gene050886:CDS |
| GGTGAAAGTGGTAATTACTA+TGG | 0.445774 | 7.1:+3052696 | MS.gene050886:CDS |
| ATGGTCAATGGAGTGCTATT+GGG | 0.445910 | 7.1:+3052715 | MS.gene050886:CDS |
| TATGGATTGTTGTTGGGAGG+TGG | 0.448346 | 7.1:+3053098 | MS.gene050886:CDS |
| TTCATAAATTGAATTTGCTT+AGG | 0.449482 | 7.1:+3053207 | MS.gene050886:CDS |
| GATGTATGTAATGGTTTGCT+TGG | 0.461730 | 7.1:+3052831 | MS.gene050886:CDS |
| AGACCTTATGGATTGTTGTT+GGG | 0.467628 | 7.1:+3053092 | MS.gene050886:CDS |
| GCTGTCACAACTACATTGGC+TGG | 0.468245 | 7.1:+3052744 | MS.gene050886:CDS |
| TTTAACTAGCCATGGTGGAT+TGG | 0.471431 | 7.1:+3053262 | MS.gene050886:CDS |
| TTTCCGATGAAACCGTTTGA+AGG | 0.478481 | 7.1:-3052195 | None:intergenic |
| GTATGTAATGGTTTGCTTGG+TGG | 0.479792 | 7.1:+3052834 | MS.gene050886:CDS |
| GAAGCCGCCACAGATGTATT+CGG | 0.481005 | 7.1:-3051947 | None:intergenic |
| AACTGCAGGGTGTTCTGTTG+TGG | 0.482968 | 7.1:+3052869 | MS.gene050886:CDS |
| TAGACCTTATGGATTGTTGT+TGG | 0.483036 | 7.1:+3053091 | MS.gene050886:CDS |
| TGGAGTTTGCGCTGCTGCCG+AGG | 0.483187 | 7.1:-3051915 | None:intergenic |
| GTAAAAGCTTATGGTGAAAG+TGG | 0.486953 | 7.1:+3052684 | MS.gene050886:CDS |
| GTGGTAATTACTATGGTCAA+TGG | 0.487253 | 7.1:+3052703 | MS.gene050886:CDS |
| AACAATCGGATAAACTAAAC+CGG | 0.492578 | 7.1:-3052376 | None:intergenic |
| CGCTGCTGCCGAGGAGAGCG+TGG | 0.496194 | 7.1:-3051906 | None:intergenic |
| ACACCTTCAAACGGTTTCAT+CGG | 0.497352 | 7.1:+3052192 | MS.gene050886:CDS |
| GGATTGGCTTATGAGTATCA+TGG | 0.498989 | 7.1:+3053278 | MS.gene050886:CDS |
| TTGAAGGTGTTCCAAAAGCT+AGG | 0.502612 | 7.1:-3052179 | None:intergenic |
| GACGTGCATTTGAAGTATGA+TGG | 0.505539 | 7.1:+3053324 | MS.gene050886:CDS |
| GTCTTCACCCGAGGTAGAGA+TGG | 0.506405 | 7.1:+3053229 | MS.gene050886:CDS |
| CAAGGTAAGCTGAGAAGAGA+AGG | 0.507589 | 7.1:-3052023 | None:intergenic |
| GATTGGCTTATGAGTATCAT+GGG | 0.514594 | 7.1:+3053279 | MS.gene050886:CDS |
| GAGAGCGTGGAGGTCGGAGG+CGG | 0.520134 | 7.1:-3051893 | None:intergenic |
| CATGGTGGTTGTGGTACTTG+GGG | 0.523447 | 7.1:+3053002 | MS.gene050886:CDS |
| AAACCTTCCATCTCTACCTC+GGG | 0.523781 | 7.1:-3053236 | None:intergenic |
| TCCGACCTCCACGCTCTCCT+CGG | 0.524571 | 7.1:+3051898 | MS.gene050886:CDS |
| GTGTTCTGTTGTGGATCCAT+GGG | 0.527050 | 7.1:+3052878 | MS.gene050886:CDS |
| AGTGTTAGTGATGTATGTAA+TGG | 0.532742 | 7.1:+3052822 | MS.gene050886:CDS |
| AACGTATGCAAACAGGCCAT+TGG | 0.534415 | 7.1:+3052799 | MS.gene050886:CDS |
| CAAAACCAATGAGCAACAAT+CGG | 0.537973 | 7.1:-3052390 | None:intergenic |
| GTCGATGAATTTGTTTGCGA+CGG | 0.538058 | 7.1:-3051974 | None:intergenic |
| CCTCCCAACAACAATCCATA+AGG | 0.542714 | 7.1:-3053095 | None:intergenic |
| GGTTTGGATTTAACTAGCCA+TGG | 0.543424 | 7.1:+3053254 | MS.gene050886:CDS |
| GCACAACTTCATGGTGGTTG+TGG | 0.547365 | 7.1:+3052993 | MS.gene050886:CDS |
| TGTGATACCTGCTGCAGCAA+TGG | 0.548951 | 7.1:-3052292 | None:intergenic |
| TGAAGGTGTTCCAAAAGCTA+GGG | 0.557787 | 7.1:-3052178 | None:intergenic |
| CCACAAATAATTGCAGCCCA+TGG | 0.565527 | 7.1:-3052894 | None:intergenic |
| CATAGCAAAACCTAATTGCA+TGG | 0.568771 | 7.1:-3052052 | None:intergenic |
| CGTAATCAAAAGATTGTGAA+GGG | 0.572177 | 7.1:-3052242 | None:intergenic |
| ATGGTGGTTGTGGTACTTGG+GGG | 0.572938 | 7.1:+3053003 | MS.gene050886:CDS |
| CCTTATGGATTGTTGTTGGG+AGG | 0.579167 | 7.1:+3053095 | MS.gene050886:CDS |
| ATTGGTAGATTTGATCATGA+GGG | 0.582391 | 7.1:+3052555 | MS.gene050886:CDS |
| GATGTATTCGGCAGCAGCAG+TGG | 0.582784 | 7.1:-3051935 | None:intergenic |
| GTTCTTGATGCCGCAATAGG+TGG | 0.583754 | 7.1:+3052129 | MS.gene050886:CDS |
| GCCGAGGAGAGCGTGGAGGT+CGG | 0.585250 | 7.1:-3051899 | None:intergenic |
| AATTGGTAGATTTGATCATG+AGG | 0.587107 | 7.1:+3052554 | MS.gene050886:CDS |
| TGAAGTTGTGCAGCTTCAAG+AGG | 0.588771 | 7.1:-3052981 | None:intergenic |
| GTAAGTGTTGTCGACAGCAT+AGG | 0.594110 | 7.1:-3052001 | None:intergenic |
| GAGGAGAGCGTGGAGGTCGG+AGG | 0.594655 | 7.1:-3051896 | None:intergenic |
| ACAATATTAAGAAAAGAACC+AGG | 0.596151 | 7.1:-3052663 | None:intergenic |
| CAAACCTTCCATCTCTACCT+CGG | 0.602079 | 7.1:-3053237 | None:intergenic |
| CCGTAATCAAAAGATTGTGA+AGG | 0.603065 | 7.1:-3052243 | None:intergenic |
| TCACCCGAGGTAGAGATGGA+AGG | 0.608823 | 7.1:+3053233 | MS.gene050886:CDS |
| TATTGCGGCATCAAGAACAT+TGG | 0.610961 | 7.1:-3052124 | None:intergenic |
| GGCTTATGAGTATCATGGGG+AGG | 0.611944 | 7.1:+3053283 | MS.gene050886:CDS |
| GACAGCTGTCACAACTACAT+TGG | 0.613672 | 7.1:+3052740 | MS.gene050886:CDS |
| ATACATCACTAACACTCCAA+TGG | 0.614445 | 7.1:-3052815 | None:intergenic |
| GCTGCAGCAGGTATCACAAG+TGG | 0.627953 | 7.1:+3052297 | MS.gene050886:CDS |
| TTGGATTTAACTAGCCATGG+TGG | 0.630060 | 7.1:+3053257 | MS.gene050886:CDS |
| CAATATTAAGAAAAGAACCA+GGG | 0.637822 | 7.1:-3052662 | None:intergenic |
| GTCAATGGAGTGCTATTGGG+AGG | 0.640296 | 7.1:+3052718 | MS.gene050886:CDS |
| GTTCCAATTAGAGGACATAG+TGG | 0.643396 | 7.1:+3052585 | MS.gene050886:CDS |
| GCTTGGGTGAGTATTACTAT+GGG | 0.643839 | 7.1:+3053167 | MS.gene050886:CDS |
| GGAACAGGTGAAAGTAGCCA+TGG | 0.643886 | 7.1:-3051872 | None:intergenic |
| TGCTGCCGAGGAGAGCGTGG+AGG | 0.655939 | 7.1:-3051903 | None:intergenic |
| GCTGCTGCCGAATACATCTG+TGG | 0.675707 | 7.1:+3051940 | MS.gene050886:CDS |
| TTTGCTTAGGTCTTCACCCG+AGG | 0.680243 | 7.1:+3053220 | MS.gene050886:CDS |
| GCTGCCGAATACATCTGTGG+CGG | 0.687449 | 7.1:+3051943 | MS.gene050886:CDS |
| ACTCATAAGCCAATCCACCA+TGG | 0.688384 | 7.1:-3053271 | None:intergenic |
| ATGGTTGGGGTAGTCCAGTG+CGG | 0.720473 | 7.1:+3052421 | MS.gene050886:CDS |
| GAAGCTGCACAACTTCATGG+TGG | 0.721100 | 7.1:+3052987 | MS.gene050886:CDS |
| ATTGGCTTATGAGTATCATG+GGG | 0.743279 | 7.1:+3053280 | MS.gene050886:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTTAATATTGTAAAAGCTTA+TGG | + | chr7.1:3052675-3052694 | MS.gene050886:CDS | 20.0% |
| !!! | ATTTATTCATCGTTTTTAAC+CGG | + | chr7.1:3052357-3052376 | MS.gene050886:CDS | 20.0% |
| !!! | TTCATAAATTGAATTTGCTT+AGG | + | chr7.1:3053207-3053226 | MS.gene050886:CDS | 20.0% |
| ! | ACAATATTAAGAAAAGAACC+AGG | - | chr7.1:3052666-3052685 | None:intergenic | 25.0% |
| ! | ATTGGTTAACATAATGTTCA+TGG | - | chr7.1:3052109-3052128 | None:intergenic | 25.0% |
| ! | CAATATTAAGAAAAGAACCA+GGG | - | chr7.1:3052665-3052684 | None:intergenic | 25.0% |
| ! | TATGTGAATGAAGTTTATTC+TGG | + | chr7.1:3053059-3053078 | MS.gene050886:CDS | 25.0% |
| !!! | GAAAATCTTTTGTTTGATTC+TGG | + | chr7.1:3052447-3052466 | MS.gene050886:CDS | 25.0% |
| !!! | GGCATTTTTTTCTATGTTTT+TGG | + | chr7.1:3052150-3052169 | MS.gene050886:CDS | 25.0% |
| !!! | TTCATCGGAAAACATTTTTT+TGG | + | chr7.1:3052207-3052226 | MS.gene050886:CDS | 25.0% |
| !!! | TTTTGGGAACTTTTTTACTT+TGG | + | chr7.1:3052619-3052638 | MS.gene050886:CDS | 25.0% |
| AACAATCGGATAAACTAAAC+CGG | - | chr7.1:3052379-3052398 | None:intergenic | 30.0% | |
| AATTGGTAGATTTGATCATG+AGG | + | chr7.1:3052554-3052573 | MS.gene050886:CDS | 30.0% | |
| AGTGTTAGTGATGTATGTAA+TGG | + | chr7.1:3052822-3052841 | MS.gene050886:CDS | 30.0% | |
| ATTGGTAGATTTGATCATGA+GGG | + | chr7.1:3052555-3052574 | MS.gene050886:CDS | 30.0% | |
| CGTAATCAAAAGATTGTGAA+GGG | - | chr7.1:3052245-3052264 | None:intergenic | 30.0% | |
| TGATCAAATCTACCAATTCT+TGG | - | chr7.1:3052552-3052571 | None:intergenic | 30.0% | |
| TTTATTGAAGGACCAAGAAT+TGG | + | chr7.1:3052537-3052556 | MS.gene050886:CDS | 30.0% | |
| ! | CATAATGTTCATGGTGTTTT+TGG | - | chr7.1:3052100-3052119 | None:intergenic | 30.0% |
| ! | TAGTGGTACTTTAGTTGTTT+TGG | + | chr7.1:3052602-3052621 | MS.gene050886:CDS | 30.0% |
| !! | AGTGGTACTTTAGTTGTTTT+GGG | + | chr7.1:3052603-3052622 | MS.gene050886:CDS | 30.0% |
| !! | CCTTCACAATCTTTTGATTA+CGG | + | chr7.1:3052243-3052262 | MS.gene050886:CDS | 30.0% |
| !! | CTTCACAATCTTTTGATTAC+GGG | + | chr7.1:3052244-3052263 | MS.gene050886:CDS | 30.0% |
| !!! | CTTTTTTACTTTGGTTTGGT+TGG | + | chr7.1:3052628-3052647 | MS.gene050886:CDS | 30.0% |
| !!! | GGAACTTTTTTACTTTGGTT+TGG | + | chr7.1:3052624-3052643 | MS.gene050886:CDS | 30.0% |
| AACAATCCATAAGGTCTATC+AGG | - | chr7.1:3053089-3053108 | None:intergenic | 35.0% | |
| ATACATCACTAACACTCCAA+TGG | - | chr7.1:3052818-3052837 | None:intergenic | 35.0% | |
| CAAAACCAATGAGCAACAAT+CGG | - | chr7.1:3052393-3052412 | None:intergenic | 35.0% | |
| CATAGCAAAACCTAATTGCA+TGG | - | chr7.1:3052055-3052074 | None:intergenic | 35.0% | |
| CCGTAATCAAAAGATTGTGA+AGG | - | chr7.1:3052246-3052265 | None:intergenic | 35.0% | |
| CTAATTGCATGGCAAAAACA+AGG | - | chr7.1:3052044-3052063 | None:intergenic | 35.0% | |
| GAAAAAAATGCCACCTATTG+CGG | - | chr7.1:3052142-3052161 | None:intergenic | 35.0% | |
| GGTGAAAGTGGTAATTACTA+TGG | + | chr7.1:3052696-3052715 | MS.gene050886:CDS | 35.0% | |
| GTAAAAGCTTATGGTGAAAG+TGG | + | chr7.1:3052684-3052703 | MS.gene050886:CDS | 35.0% | |
| GTGGTAATTACTATGGTCAA+TGG | + | chr7.1:3052703-3052722 | MS.gene050886:CDS | 35.0% | |
| TTTATCCGATTGTTGCTCAT+TGG | + | chr7.1:3052385-3052404 | MS.gene050886:CDS | 35.0% | |
| TTTGGTAAACGTATGCAAAC+AGG | + | chr7.1:3052792-3052811 | MS.gene050886:CDS | 35.0% | |
| ! | AGACCTTATGGATTGTTGTT+GGG | + | chr7.1:3053092-3053111 | MS.gene050886:CDS | 35.0% |
| ! | ATTGGCTTATGAGTATCATG+GGG | + | chr7.1:3053280-3053299 | MS.gene050886:CDS | 35.0% |
| ! | TACTTCAAATGCACGTCTTT+TGG | - | chr7.1:3053321-3053340 | None:intergenic | 35.0% |
| ! | TAGACCTTATGGATTGTTGT+TGG | + | chr7.1:3053091-3053110 | MS.gene050886:CDS | 35.0% |
| ! | TGCACATGTTGTTCAGATTT+TGG | + | chr7.1:3053136-3053155 | MS.gene050886:CDS | 35.0% |
| !! | GATGTATGTAATGGTTTGCT+TGG | + | chr7.1:3052831-3052850 | MS.gene050886:CDS | 35.0% |
| !! | GATTGGCTTATGAGTATCAT+GGG | + | chr7.1:3053279-3053298 | MS.gene050886:CDS | 35.0% |
| !! | TGTGGTGTTGTTCATTTAGT+TGG | + | chr7.1:3052489-3052508 | MS.gene050886:CDS | 35.0% |
| !! | TTACTTTGGTTTGGTTGGTA+TGG | + | chr7.1:3052633-3052652 | MS.gene050886:CDS | 35.0% |
| !!! | ACGGGTTTTTCCTTTTTCAA+TGG | + | chr7.1:3052262-3052281 | MS.gene050886:CDS | 35.0% |
| !!! | AGATTTTGGCTATTGTTGCT+TGG | + | chr7.1:3053150-3053169 | MS.gene050886:CDS | 35.0% |
| !!! | CGGGTTTTTCCTTTTTCAAT+GGG | + | chr7.1:3052263-3052282 | MS.gene050886:CDS | 35.0% |
| !!! | CTTGTTTTTGCCATGCAATT+AGG | + | chr7.1:3052042-3052061 | MS.gene050886:CDS | 35.0% |
| !!! | GATTTTGGCTATTGTTGCTT+GGG | + | chr7.1:3053151-3053170 | MS.gene050886:CDS | 35.0% |
| !!! | GTTATTGATTTTGCTGGTTG+TGG | + | chr7.1:3052471-3052490 | MS.gene050886:CDS | 35.0% |
| !!! | TCTGGTGTTATTGATTTTGC+TGG | + | chr7.1:3052465-3052484 | MS.gene050886:CDS | 35.0% |
| !!! | TTTTGGGGTGCTTTTATTGA+AGG | + | chr7.1:3052525-3052544 | MS.gene050886:CDS | 35.0% |
| AATGTTCTTGATGCCGCAAT+AGG | + | chr7.1:3052126-3052145 | MS.gene050886:CDS | 40.0% | |
| ACACCTTCAAACGGTTTCAT+CGG | + | chr7.1:3052192-3052211 | MS.gene050886:CDS | 40.0% | |
| GCTTGGGTGAGTATTACTAT+GGG | + | chr7.1:3053167-3053186 | MS.gene050886:CDS | 40.0% | |
| GGTTTGGATTTAACTAGCCA+TGG | + | chr7.1:3053254-3053273 | MS.gene050886:CDS | 40.0% | |
| GTACCACTATGTCCTCTAAT+TGG | - | chr7.1:3052591-3052610 | None:intergenic | 40.0% | |
| GTTCCAATTAGAGGACATAG+TGG | + | chr7.1:3052585-3052604 | MS.gene050886:CDS | 40.0% | |
| TATTGCGGCATCAAGAACAT+TGG | - | chr7.1:3052127-3052146 | None:intergenic | 40.0% | |
| TGCTTGGGTGAGTATTACTA+TGG | + | chr7.1:3053166-3053185 | MS.gene050886:CDS | 40.0% | |
| TGGCAAAAGCCCATTGAAAA+AGG | - | chr7.1:3052275-3052294 | None:intergenic | 40.0% | |
| TTGGATTTAACTAGCCATGG+TGG | + | chr7.1:3053257-3053276 | MS.gene050886:CDS | 40.0% | |
| TTTCCGATGAAACCGTTTGA+AGG | - | chr7.1:3052198-3052217 | None:intergenic | 40.0% | |
| ! | AAAAGATTTTCAGACCGCAC+TGG | - | chr7.1:3052438-3052457 | None:intergenic | 40.0% |
| ! | ATGGTCAATGGAGTGCTATT+GGG | + | chr7.1:3052715-3052734 | MS.gene050886:CDS | 40.0% |
| ! | GTCGATGAATTTGTTTGCGA+CGG | - | chr7.1:3051977-3051996 | None:intergenic | 40.0% |
| ! | GTTTTGCTGCTATAACTGCA+GGG | + | chr7.1:3052856-3052875 | MS.gene050886:CDS | 40.0% |
| ! | TATGGTCAATGGAGTGCTAT+TGG | + | chr7.1:3052714-3052733 | MS.gene050886:CDS | 40.0% |
| !! | GGATTGGCTTATGAGTATCA+TGG | + | chr7.1:3053278-3053297 | MS.gene050886:CDS | 40.0% |
| !! | GGTGAAAGTGTTCCAATTAG+AGG | + | chr7.1:3052576-3052595 | MS.gene050886:CDS | 40.0% |
| !! | GTATGTAATGGTTTGCTTGG+TGG | + | chr7.1:3052834-3052853 | MS.gene050886:CDS | 40.0% |
| !! | GTTGCTGCTTGGGTTTTAAT+TGG | + | chr7.1:3052921-3052940 | MS.gene050886:CDS | 40.0% |
| !! | TGAAGGTGTTCCAAAAGCTA+GGG | - | chr7.1:3052181-3052200 | None:intergenic | 40.0% |
| !! | TTGAAGGTGTTCCAAAAGCT+AGG | - | chr7.1:3052182-3052201 | None:intergenic | 40.0% |
| !! | TTGTGGATTTGTTGCTGCTT+GGG | + | chr7.1:3052911-3052930 | MS.gene050886:CDS | 40.0% |
| !! | TTTAACTAGCCATGGTGGAT+TGG | + | chr7.1:3053262-3053281 | MS.gene050886:CDS | 40.0% |
| !! | TTTGTGGATTTGTTGCTGCT+TGG | + | chr7.1:3052910-3052929 | MS.gene050886:CDS | 40.0% |
| !!! | CGATTGTTGCTCATTGGTTT+TGG | + | chr7.1:3052391-3052410 | MS.gene050886:CDS | 40.0% |
| !!! | GCTTTTGGAACACCTTCAAA+CGG | + | chr7.1:3052183-3052202 | MS.gene050886:CDS | 40.0% |
| !!! | GTTTTTGGCACGAATAGAAC+CGG | - | chr7.1:3052085-3052104 | None:intergenic | 40.0% |
| !!! | TTTGGTTTTGCCCTAGCTTT+TGG | + | chr7.1:3052168-3052187 | MS.gene050886:CDS | 40.0% |
| AAACCTTCCATCTCTACCTC+GGG | - | chr7.1:3053239-3053258 | None:intergenic | 45.0% | |
| AACGTATGCAAACAGGCCAT+TGG | + | chr7.1:3052799-3052818 | MS.gene050886:CDS | 45.0% | |
| ACTCATAAGCCAATCCACCA+TGG | - | chr7.1:3053274-3053293 | None:intergenic | 45.0% | |
| CAAACCTTCCATCTCTACCT+CGG | - | chr7.1:3053240-3053259 | None:intergenic | 45.0% | |
| CAAGGTAAGCTGAGAAGAGA+AGG | - | chr7.1:3052026-3052045 | None:intergenic | 45.0% | |
| CCACAAATAATTGCAGCCCA+TGG | - | chr7.1:3052897-3052916 | None:intergenic | 45.0% | |
| CCTCCCAACAACAATCCATA+AGG | - | chr7.1:3053098-3053117 | None:intergenic | 45.0% | |
| CTTGAAGCTGCACAACTTCA+TGG | + | chr7.1:3052984-3053003 | MS.gene050886:CDS | 45.0% | |
| GACAGCTGTCACAACTACAT+TGG | + | chr7.1:3052740-3052759 | MS.gene050886:CDS | 45.0% | |
| GCAGCTCTCACTACTTTGTT+TGG | + | chr7.1:3052774-3052793 | MS.gene050886:CDS | 45.0% | |
| GGTTCTCCTGATAGACCTTA+TGG | + | chr7.1:3053080-3053099 | MS.gene050886:CDS | 45.0% | |
| GTGTTCTGTTGTGGATCCAT+GGG | + | chr7.1:3052878-3052897 | MS.gene050886:CDS | 45.0% | |
| TCATGGTGGTTGTGGTACTT+GGG | + | chr7.1:3053001-3053020 | MS.gene050886:CDS | 45.0% | |
| TGAAGTTGTGCAGCTTCAAG+AGG | - | chr7.1:3052984-3053003 | None:intergenic | 45.0% | |
| TTCATGGTGGTTGTGGTACT+TGG | + | chr7.1:3053000-3053019 | MS.gene050886:CDS | 45.0% | |
| ! | CCATGGGCTGCAATTATTTG+TGG | + | chr7.1:3052894-3052913 | MS.gene050886:CDS | 45.0% |
| ! | CCTTATGGATTGTTGTTGGG+AGG | + | chr7.1:3053095-3053114 | MS.gene050886:CDS | 45.0% |
| ! | GGTTTTGCTGCTATAACTGC+AGG | + | chr7.1:3052855-3052874 | MS.gene050886:CDS | 45.0% |
| ! | GTAAGTGTTGTCGACAGCAT+AGG | - | chr7.1:3052004-3052023 | None:intergenic | 45.0% |
| ! | TATGGATTGTTGTTGGGAGG+TGG | + | chr7.1:3053098-3053117 | MS.gene050886:CDS | 45.0% |
| ! | TTTTGGTCTGCTGATGGTTG+GGG | + | chr7.1:3052408-3052427 | MS.gene050886:CDS | 45.0% |
| !! | CATTTAGTTGGTGCTGTTGC+TGG | + | chr7.1:3052501-3052520 | MS.gene050886:CDS | 45.0% |
| !! | GGTTTTGCTATGCTTTGTGC+CGG | + | chr7.1:3052063-3052082 | MS.gene050886:CDS | 45.0% |
| !! | GTTTTGGTCTGCTGATGGTT+GGG | + | chr7.1:3052407-3052426 | MS.gene050886:CDS | 45.0% |
| !!! | CATTGGTTTTGGTCTGCTGA+TGG | + | chr7.1:3052402-3052421 | MS.gene050886:CDS | 45.0% |
| !!! | GGTTGGTATGGTTTTAACCC+TGG | + | chr7.1:3052645-3052664 | MS.gene050886:CDS | 45.0% |
| !!! | TGGTGCTGTTGCTGGTTTTT+GGG | + | chr7.1:3052509-3052528 | MS.gene050886:CDS | 45.0% |
| !!! | TTGGTGCTGTTGCTGGTTTT+TGG | + | chr7.1:3052508-3052527 | MS.gene050886:CDS | 45.0% |
| ATGGTGGTTGTGGTACTTGG+GGG | + | chr7.1:3053003-3053022 | MS.gene050886:CDS | 50.0% | |
| CATGGTGGTTGTGGTACTTG+GGG | + | chr7.1:3053002-3053021 | MS.gene050886:CDS | 50.0% | |
| CGAGGTAGAGATGGAAGGTT+TGG | + | chr7.1:3053238-3053257 | MS.gene050886:CDS | 50.0% | |
| GAAGCCGCCACAGATGTATT+CGG | - | chr7.1:3051950-3051969 | None:intergenic | 50.0% | |
| GAAGCTGCACAACTTCATGG+TGG | + | chr7.1:3052987-3053006 | MS.gene050886:CDS | 50.0% | |
| GCACAACTTCATGGTGGTTG+TGG | + | chr7.1:3052993-3053012 | MS.gene050886:CDS | 50.0% | |
| GCTGTCACAACTACATTGGC+TGG | + | chr7.1:3052744-3052763 | MS.gene050886:CDS | 50.0% | |
| GGCTTATGAGTATCATGGGG+AGG | + | chr7.1:3053283-3053302 | MS.gene050886:CDS | 50.0% | |
| GGTGTTCTGTTGTGGATCCA+TGG | + | chr7.1:3052877-3052896 | MS.gene050886:CDS | 50.0% | |
| GTTCTTGATGCCGCAATAGG+TGG | + | chr7.1:3052129-3052148 | MS.gene050886:CDS | 50.0% | |
| TGTGATACCTGCTGCAGCAA+TGG | - | chr7.1:3052295-3052314 | None:intergenic | 50.0% | |
| TTTGCTTAGGTCTTCACCCG+AGG | + | chr7.1:3053220-3053239 | MS.gene050886:CDS | 50.0% | |
| ! | AACTGCAGGGTGTTCTGTTG+TGG | + | chr7.1:3052869-3052888 | MS.gene050886:CDS | 50.0% |
| ! | GTCAATGGAGTGCTATTGGG+AGG | + | chr7.1:3052718-3052737 | MS.gene050886:CDS | 50.0% |
| !! | GGGAGGTGGTGGAAGATTAT+TGG | + | chr7.1:3053112-3053131 | MS.gene050886:CDS | 50.0% |
| !! | GGTTTTGGTCTGCTGATGGT+TGG | + | chr7.1:3052406-3052425 | MS.gene050886:CDS | 50.0% |
| !!! | GGTGCTGTTGCTGGTTTTTG+GGG | + | chr7.1:3052510-3052529 | MS.gene050886:CDS | 50.0% |
| ATGGTTGGGGTAGTCCAGTG+CGG | + | chr7.1:3052421-3052440 | MS.gene050886:CDS | 55.0% | |
| GATGTATTCGGCAGCAGCAG+TGG | - | chr7.1:3051938-3051957 | None:intergenic | 55.0% | |
| GCTGCAGCAGGTATCACAAG+TGG | + | chr7.1:3052297-3052316 | MS.gene050886:CDS | 55.0% | |
| GCTGCCGAATACATCTGTGG+CGG | + | chr7.1:3051943-3051962 | MS.gene050886:CDS | 55.0% | |
| GCTGCTGCCGAATACATCTG+TGG | + | chr7.1:3051940-3051959 | MS.gene050886:CDS | 55.0% | |
| GTCTTCACCCGAGGTAGAGA+TGG | + | chr7.1:3053229-3053248 | MS.gene050886:CDS | 55.0% | |
| TCACCCGAGGTAGAGATGGA+AGG | + | chr7.1:3053233-3053252 | MS.gene050886:CDS | 55.0% | |
| ! | GCTTTTGCCATTGCTGCAGC+AGG | + | chr7.1:3052285-3052304 | MS.gene050886:CDS | 55.0% |
| ! | GGATTGTTGTTGGGAGGTGG+TGG | + | chr7.1:3053101-3053120 | MS.gene050886:CDS | 55.0% |
| TCCGACCTCCACGCTCTCCT+CGG | + | chr7.1:3051898-3051917 | MS.gene050886:CDS | 65.0% | |
| TGGAGTTTGCGCTGCTGCCG+AGG | - | chr7.1:3051918-3051937 | None:intergenic | 65.0% | |
| GTGGAGGTCGGAGGCGGAAC+AGG | - | chr7.1:3051890-3051909 | None:intergenic | 70.0% | |
| ! | GAGAGCGTGGAGGTCGGAGG+CGG | - | chr7.1:3051896-3051915 | None:intergenic | 70.0% |
| ! | GAGGAGAGCGTGGAGGTCGG+AGG | - | chr7.1:3051899-3051918 | None:intergenic | 70.0% |
| ! | GCCGAGGAGAGCGTGGAGGT+CGG | - | chr7.1:3051902-3051921 | None:intergenic | 70.0% |
| ! | TGCTGCCGAGGAGAGCGTGG+AGG | - | chr7.1:3051906-3051925 | None:intergenic | 70.0% |
| CGCTGCTGCCGAGGAGAGCG+TGG | - | chr7.1:3051909-3051928 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 3051874 | 3053343 | 3051874 | ID=MS.gene050886 |
| chr7.1 | mRNA | 3051874 | 3053343 | 3051874 | ID=MS.gene050886.t1;Parent=MS.gene050886 |
| chr7.1 | exon | 3051874 | 3053343 | 3051874 | ID=MS.gene050886.t1.exon1;Parent=MS.gene050886.t1 |
| chr7.1 | CDS | 3051874 | 3053343 | 3051874 | ID=cds.MS.gene050886.t1;Parent=MS.gene050886.t1 |
| Gene Sequence |
| Protein sequence |
