Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06786.t1 | XP_013461492.1 | 99.5 | 369 | 2 | 0 | 1 | 369 | 1 | 369 | 6.80E-184 | 653.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06786.t1 | Q9ZVH8 | 49.1 | 395 | 152 | 7 | 6 | 369 | 2 | 378 | 1.9e-89 | 330.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06786.t1 | A0A072V117 | 99.5 | 369 | 2 | 0 | 1 | 369 | 1 | 369 | 4.9e-184 | 653.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene06786.t1 | TR | IWS1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049411 | MS.gene06786 | 0.925157 | 2.68E-90 | -1.69E-46 |
| MS.gene050985 | MS.gene06786 | 0.818468 | 1.93E-52 | -1.69E-46 |
| MS.gene051234 | MS.gene06786 | 0.801444 | 8.98E-49 | -1.69E-46 |
| MS.gene051642 | MS.gene06786 | 0.806564 | 7.74E-50 | -1.69E-46 |
| MS.gene051716 | MS.gene06786 | 0.82803 | 1.13E-54 | -1.69E-46 |
| MS.gene054004 | MS.gene06786 | 0.807862 | 4.11E-50 | -1.69E-46 |
| MS.gene054005 | MS.gene06786 | 0.829826 | 4.14E-55 | -1.69E-46 |
| MS.gene057662 | MS.gene06786 | 0.804892 | 1.74E-49 | -1.69E-46 |
| MS.gene059802 | MS.gene06786 | 0.845719 | 3.41E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene06786 | MS.gene35554 | PPI |
| MS.gene011065 | MS.gene06786 | PPI |
| MS.gene06786 | MS.gene65289 | PPI |
| MS.gene06786 | MS.gene56011 | PPI |
| MS.gene06786 | MS.gene063673 | PPI |
| MS.gene06786 | MS.gene34585 | PPI |
| MS.gene06786 | MS.gene025458 | PPI |
| MS.gene06786 | MS.gene27287 | PPI |
| MS.gene06786 | MS.gene51225 | PPI |
| MS.gene058216 | MS.gene06786 | PPI |
| MS.gene06786 | MS.gene67685 | PPI |
| MS.gene06786 | MS.gene36633 | PPI |
| MS.gene06786 | MS.gene026765 | PPI |
| MS.gene06786 | MS.gene36746 | PPI |
| MS.gene072221 | MS.gene06786 | PPI |
| MS.gene06786 | MS.gene072220 | PPI |
| MS.gene06786 | MS.gene27025 | PPI |
| MS.gene06786 | MS.gene64820 | PPI |
| MS.gene67503 | MS.gene06786 | PPI |
| MS.gene71147 | MS.gene06786 | PPI |
| MS.gene06786 | MS.gene90747 | PPI |
| MS.gene06786 | MS.gene24205 | PPI |
| MS.gene00182 | MS.gene06786 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06786.t1 | MTR_3g093800 | 99.458 | 369 | 2 | 0 | 1 | 369 | 1 | 369 | 0.0 | 754 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06786.t1 | AT2G38560 | 53.368 | 386 | 149 | 9 | 6 | 369 | 2 | 378 | 1.77e-118 | 348 |
| MS.gene06786.t1 | AT2G42725 | 48.031 | 127 | 65 | 1 | 189 | 314 | 104 | 230 | 6.98e-32 | 120 |
| MS.gene06786.t1 | AT4G18720 | 51.724 | 116 | 55 | 1 | 184 | 298 | 100 | 215 | 9.89e-30 | 115 |
| MS.gene06786.t1 | AT5G42325 | 40.625 | 128 | 58 | 3 | 189 | 314 | 104 | 215 | 2.60e-19 | 86.3 |
Find 88 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCGAGTTTGCATTTGGTAAT+AGG | 0.248412 | 3.3:+78105945 | None:intergenic |
| GTCCTTAATGTTTAATCTTA+AGG | 0.250681 | 3.3:-78106184 | MS.gene06786:CDS |
| ATTCAGCGCGAGACAAAATA+AGG | 0.257557 | 3.3:-78106368 | MS.gene06786:CDS |
| ATCCTTAAGATTAAACATTA+AGG | 0.282366 | 3.3:+78106182 | None:intergenic |
| ATCAGAAGAACCCTGATTTC+CGG | 0.285749 | 3.3:-78106161 | MS.gene06786:CDS |
| AGGACCTATACTTGACCTTT+TGG | 0.308451 | 3.3:+78106202 | None:intergenic |
| AGTCCGTATTATTTGAAAAC+TGG | 0.312826 | 3.3:-78106242 | MS.gene06786:CDS |
| CTCCTTCGCTTTGATGTTCA+AGG | 0.313662 | 3.3:+78106473 | None:intergenic |
| CTGTTGACTTAATTGCGATA+TGG | 0.314443 | 3.3:-78106734 | MS.gene06786:CDS |
| GCCAAGGTGGAGAAAGTTAA+TGG | 0.315639 | 3.3:-78106573 | MS.gene06786:CDS |
| AATTGATCAGTAGTAGCTTT+TGG | 0.339749 | 3.3:+78106000 | None:intergenic |
| GAGGCAACGGGTTTCTTCGC+TGG | 0.347716 | 3.3:+78108445 | None:intergenic |
| ACTGTCACTGCCACACGAAT+AGG | 0.349730 | 3.3:+78106267 | None:intergenic |
| CAGCACTGCGAGTTTGCATT+TGG | 0.373188 | 3.3:+78105938 | None:intergenic |
| AGCATCCCAGGGAGAACATT+CGG | 0.381324 | 3.3:-78106764 | MS.gene06786:CDS |
| CGTCATGAGCTCAGCAGAAA+TGG | 0.387279 | 3.3:-78106097 | MS.gene06786:CDS |
| GAACGGGGCCTCTGATTCTA+AGG | 0.389336 | 3.3:-78106676 | MS.gene06786:CDS |
| ATCATAGTCTTCAGCTTTGG+TGG | 0.390447 | 3.3:+78106402 | None:intergenic |
| CTTTGGTGGAGCAGCAGCGC+TGG | 0.398518 | 3.3:+78106416 | None:intergenic |
| GAAAACTGGGGTCCTTCAAA+TGG | 0.424609 | 3.3:-78106228 | MS.gene06786:CDS |
| TTGATCATAGTCTTCAGCTT+TGG | 0.429713 | 3.3:+78106399 | None:intergenic |
| TACTGTTGAGCCACAGCGGC+TGG | 0.438165 | 3.3:-78106121 | MS.gene06786:CDS |
| TTCAAGCGCATCGAGGCAAC+GGG | 0.440343 | 3.3:+78108433 | None:intergenic |
| GCATCCCAGGGAGAACATTC+GGG | 0.444394 | 3.3:-78106763 | MS.gene06786:CDS |
| CTCATGACGGCCAGCCGCTG+TGG | 0.450612 | 3.3:+78106111 | None:intergenic |
| CTGTCACTGCCACACGAATA+GGG | 0.453244 | 3.3:+78106268 | None:intergenic |
| AGGCAACGGGTTTCTTCGCT+GGG | 0.460026 | 3.3:+78108446 | None:intergenic |
| TCCTTCAAATGGAGCCCAAA+AGG | 0.467781 | 3.3:-78106217 | MS.gene06786:CDS |
| AAACTCTCACCAAGCATCCC+AGG | 0.468100 | 3.3:-78106776 | MS.gene06786:CDS |
| GTGGTTGGGTTCGATGGAGA+AGG | 0.470982 | 3.3:-78108546 | None:intergenic |
| GGTTCATCAAAGCTGAGCTC+TGG | 0.479292 | 3.3:-78106546 | MS.gene06786:CDS |
| TTCTTCGCTGGGACTATCAT+CGG | 0.481323 | 3.3:+78108457 | None:intergenic |
| AATGTTCTCCCTGGGATGCT+TGG | 0.486291 | 3.3:+78106767 | None:intergenic |
| CAAGTGACATAGGTTGTCAT+AGG | 0.486857 | 3.3:+78105910 | None:intergenic |
| CCCATTAACTTTCTCCACCT+TGG | 0.490756 | 3.3:+78106572 | None:intergenic |
| CCTTTCTCAACCTTCACTGA+AGG | 0.497037 | 3.3:+78106603 | None:intergenic |
| ATGGAAAGACGTAATTATCA+AGG | 0.497212 | 3.3:-78106715 | MS.gene06786:CDS |
| GTCCGTATTATTTGAAAACT+GGG | 0.498242 | 3.3:-78106241 | MS.gene06786:CDS |
| GTTCAAGCGCATCGAGGCAA+CGG | 0.502578 | 3.3:+78108432 | None:intergenic |
| CCAAGGTGGAGAAAGTTAAT+GGG | 0.509185 | 3.3:-78106572 | MS.gene06786:CDS |
| GGGACTATCATCGGTGGAGG+TGG | 0.510748 | 3.3:+78108466 | None:intergenic |
| AAAAGCCCGAATGTTCTCCC+TGG | 0.523075 | 3.3:+78106758 | None:intergenic |
| GCAGTTAACACAAGTGACAT+AGG | 0.530050 | 3.3:+78105900 | None:intergenic |
| CTAAGGTTGAGTCAACGAAT+GGG | 0.530166 | 3.3:-78106659 | MS.gene06786:CDS |
| CCTTCAGTGAAGGTTGAGAA+AGG | 0.536034 | 3.3:-78106603 | MS.gene06786:CDS |
| GAAGGAGAAAGAGAAAGAGT+TGG | 0.537798 | 3.3:-78108528 | MS.gene06786:CDS |
| AGCATCCGCCGCTTTCTTCG+CGG | 0.541475 | 3.3:+78108490 | None:intergenic |
| AGAGGCAGATGAAGATATGA+TGG | 0.547455 | 3.3:-78106310 | MS.gene06786:CDS |
| GTGGAGAAAGTTAATGGGAA+TGG | 0.557971 | 3.3:-78106567 | MS.gene06786:CDS |
| TCTCCGAGATGCTTTAGCTA+AGG | 0.559780 | 3.3:-78106340 | MS.gene06786:CDS |
| TTCAGCGCGAGACAAAATAA+GGG | 0.562584 | 3.3:-78106367 | MS.gene06786:CDS |
| GCTGAGCTCTGGAAATGTAA+AGG | 0.564072 | 3.3:-78106535 | MS.gene06786:CDS |
| GCAAAAGAGTCCTTCAGTGA+AGG | 0.568044 | 3.3:-78106613 | MS.gene06786:CDS |
| TCTAAGGTTGAGTCAACGAA+TGG | 0.570762 | 3.3:-78106660 | MS.gene06786:CDS |
| AGTTTGCATTTGGTAATAGG+TGG | 0.578245 | 3.3:+78105948 | None:intergenic |
| AAAGCCCGAATGTTCTCCCT+GGG | 0.578463 | 3.3:+78106759 | None:intergenic |
| CTGATCAATTTAAGTGTGGT+CGG | 0.587454 | 3.3:-78105987 | MS.gene06786:CDS |
| TATTCGTGTGGCAGTGACAG+TGG | 0.587816 | 3.3:-78106265 | MS.gene06786:CDS |
| GCTTTGTTCGACTGTGAGCG+TGG | 0.588912 | 3.3:-78106030 | MS.gene06786:CDS |
| CAGAAATGGCTAGTGAGCAA+AGG | 0.590372 | 3.3:-78106083 | MS.gene06786:CDS |
| AGACCTTAGCTAAAGCATCT+CGG | 0.591289 | 3.3:+78106337 | None:intergenic |
| AATGGGGAGAGAGCTAAAGC+TGG | 0.591506 | 3.3:-78106642 | MS.gene06786:CDS |
| GTGTTAACTGCAACAACCGT+TGG | 0.591905 | 3.3:-78105888 | MS.gene06786:CDS |
| AAATGTAAAGGCACAAAATG+TGG | 0.596450 | 3.3:-78106523 | MS.gene06786:CDS |
| TTCGCTGGGACTATCATCGG+TGG | 0.598548 | 3.3:+78108460 | None:intergenic |
| GAGCCCAAAAGGTCAAGTAT+AGG | 0.599758 | 3.3:-78106206 | MS.gene06786:CDS |
| AACTCTCACCAAGCATCCCA+GGG | 0.605206 | 3.3:-78106775 | MS.gene06786:CDS |
| CAAAATTCTCGTCAATACCC+AGG | 0.608507 | 3.3:-78108384 | MS.gene06786:intron |
| TACCTTGAACATCAAAGCGA+AGG | 0.608658 | 3.3:-78106475 | MS.gene06786:CDS |
| GAAAGGAGAAAGTGCCAAGG+TGG | 0.613295 | 3.3:-78106586 | MS.gene06786:CDS |
| GCTGGGACTATCATCGGTGG+AGG | 0.613512 | 3.3:+78108463 | None:intergenic |
| ATGGGGAGAGAGCTAAAGCT+GGG | 0.620446 | 3.3:-78106641 | MS.gene06786:CDS |
| AGTGTGGTCGGTGTGGACAA+AGG | 0.621667 | 3.3:-78105975 | MS.gene06786:CDS |
| TTTAGCTAAGGTCTTTGAAG+AGG | 0.626494 | 3.3:-78106328 | MS.gene06786:CDS |
| TGACTCAACCTTAGAATCAG+AGG | 0.626857 | 3.3:+78106668 | None:intergenic |
| CAATTTAAGTGTGGTCGGTG+TGG | 0.627337 | 3.3:-78105982 | MS.gene06786:CDS |
| CTTGAACATCAAAGCGAAGG+AGG | 0.647012 | 3.3:-78106472 | MS.gene06786:CDS |
| ACTACTGATCAATTTAAGTG+TGG | 0.648979 | 3.3:-78105991 | MS.gene06786:CDS |
| GTACGAAGCCGCGAAGAAAG+CGG | 0.650598 | 3.3:-78108498 | MS.gene06786:CDS |
| TGAGAAAGGAGAAAGTGCCA+AGG | 0.657225 | 3.3:-78106589 | MS.gene06786:CDS |
| AGTACTAACAAAACTTCCAA+CGG | 0.659265 | 3.3:+78105872 | None:intergenic |
| TAAGGTTGAGTCAACGAATG+GGG | 0.661593 | 3.3:-78106658 | MS.gene06786:CDS |
| CATTTCTGCTGAGCTCATGA+CGG | 0.685355 | 3.3:+78106098 | None:intergenic |
| CGAAGCCGCGAAGAAAGCGG+CGG | 0.685814 | 3.3:-78108495 | MS.gene06786:CDS |
| TCCGTATTATTTGAAAACTG+GGG | 0.694223 | 3.3:-78106240 | MS.gene06786:CDS |
| TGCATGTGACCCTATTCGTG+TGG | 0.704457 | 3.3:-78106277 | MS.gene06786:CDS |
| TGAGCTGTTCAAGCGCATCG+AGG | 0.741948 | 3.3:+78108426 | None:intergenic |
| TTGGTACTGTTGAGCCACAG+CGG | 0.773544 | 3.3:-78106125 | MS.gene06786:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAAAAAATACAAGATTT+CGG | + | chr3.3:78106655-78106674 | None:intergenic | 10.0% |
| !! | AAAAATATTGCTATGAAATA+TGG | + | chr3.3:78107041-78107060 | None:intergenic | 15.0% |
| !! | AAAAGAAATAGAGATAGTTA+AGG | - | chr3.3:78107492-78107511 | MS.gene06786:intron | 20.0% |
| !! | AAACAAGTAAAAATAAGAAC+GGG | - | chr3.3:78107717-78107736 | MS.gene06786:intron | 20.0% |
| !! | AAAGAAATAGAGATAGTTAA+GGG | - | chr3.3:78107493-78107512 | MS.gene06786:intron | 20.0% |
| !! | AAATCAGAAAAAACTATAAC+GGG | + | chr3.3:78106887-78106906 | None:intergenic | 20.0% |
| !! | AACAAACTATTTATTAAGCA+AGG | + | chr3.3:78107262-78107281 | None:intergenic | 20.0% |
| !! | AATACTAGTTCATAGTTTAT+TGG | - | chr3.3:78107091-78107110 | MS.gene06786:intron | 20.0% |
| !! | ATAGAAAAAACTGTAGTATT+TGG | - | chr3.3:78107460-78107479 | MS.gene06786:intron | 20.0% |
| !! | ATCCTTAAGATTAAACATTA+AGG | + | chr3.3:78108230-78108249 | None:intergenic | 20.0% |
| !! | ATTTGTTTAGAAATATCTGT+AGG | + | chr3.3:78107003-78107022 | None:intergenic | 20.0% |
| !! | CAAATCAGAAAAAACTATAA+CGG | + | chr3.3:78106888-78106907 | None:intergenic | 20.0% |
| !! | GAAACAAGTAAAAATAAGAA+CGG | - | chr3.3:78107716-78107735 | MS.gene06786:intron | 20.0% |
| !! | GAATAGAAAAATAATAACCT+GGG | + | chr3.3:78106045-78106064 | None:intergenic | 20.0% |
| !! | GAGTTATAGATTTGTAAATT+TGG | - | chr3.3:78106276-78106295 | MS.gene06786:CDS | 20.0% |
| !! | TGAATAGAAAAATAATAACC+TGG | + | chr3.3:78106046-78106065 | None:intergenic | 20.0% |
| !! | TTTGTTTAGAAATATCTGTA+GGG | + | chr3.3:78107002-78107021 | None:intergenic | 20.0% |
| !!! | GTTTTGTTTTTGGTTAAATT+GGG | - | chr3.3:78106323-78106342 | MS.gene06786:CDS | 20.0% |
| !!! | TCAAATCTTTACTTTTTTCA+TGG | - | chr3.3:78107531-78107550 | MS.gene06786:intron | 20.0% |
| !!! | TCAATTTTAGGTTTTGTTTT+TGG | - | chr3.3:78106313-78106332 | MS.gene06786:CDS | 20.0% |
| !!! | TTTCTGATTTGAATAGATTT+TGG | - | chr3.3:78106897-78106916 | MS.gene06786:intron | 20.0% |
| ! | AACAAGTAAAAATAAGAACG+GGG | - | chr3.3:78107718-78107737 | MS.gene06786:intron | 25.0% |
| ! | AACTATGAACTAGTATTTCA+CGG | + | chr3.3:78107088-78107107 | None:intergenic | 25.0% |
| ! | AATTAAATTAGCACATTGTG+TGG | - | chr3.3:78106369-78106388 | MS.gene06786:CDS | 25.0% |
| ! | CAACTGGCTAATTTAAATTA+CGG | + | chr3.3:78106472-78106491 | None:intergenic | 25.0% |
| ! | GAACTTATTTAAACTGGAAT+GGG | - | chr3.3:78106940-78106959 | MS.gene06786:intron | 25.0% |
| ! | GTCCTTAATGTTTAATCTTA+AGG | - | chr3.3:78108225-78108244 | MS.gene06786:intron | 25.0% |
| ! | TTTGCATGTTATAGTTGTTA+GGG | - | chr3.3:78106155-78106174 | MS.gene06786:CDS | 25.0% |
| !! | ATTTTCTGATGTAATCTTTC+AGG | - | chr3.3:78107595-78107614 | MS.gene06786:intron | 25.0% |
| !! | GTAAAGATTTGAGATCAATT+TGG | + | chr3.3:78107523-78107542 | None:intergenic | 25.0% |
| !! | TCTATTCACATTGCAAATTT+TGG | - | chr3.3:78106058-78106077 | MS.gene06786:CDS | 25.0% |
| !! | TGTTTGGAACTTATTTAAAC+TGG | - | chr3.3:78106934-78106953 | MS.gene06786:intron | 25.0% |
| !! | TTTTGCATGTTATAGTTGTT+AGG | - | chr3.3:78106154-78106173 | MS.gene06786:CDS | 25.0% |
| !!! | ACAGTTTTTTCTATCTAGTT+TGG | + | chr3.3:78107454-78107473 | None:intergenic | 25.0% |
| !!! | GGTTTTGTTTTTGGTTAAAT+TGG | - | chr3.3:78106322-78106341 | MS.gene06786:CDS | 25.0% |
| !!! | TTTTTAATTCTTTGATGACG+TGG | - | chr3.3:78106669-78106688 | MS.gene06786:CDS | 25.0% |
| AATGAAACCAATCCTAACTT+TGG | + | chr3.3:78106822-78106841 | None:intergenic | 30.0% | |
| ACCACAAATAACAATATCCT+TGG | + | chr3.3:78106771-78106790 | None:intergenic | 30.0% | |
| ACTACTGATCAATTTAAGTG+TGG | - | chr3.3:78108418-78108437 | MS.gene06786:CDS | 30.0% | |
| ACTATGAACTAGTATTTCAC+GGG | + | chr3.3:78107087-78107106 | None:intergenic | 30.0% | |
| AGTCCGTATTATTTGAAAAC+TGG | - | chr3.3:78108167-78108186 | MS.gene06786:intron | 30.0% | |
| ATGAAAATCGTAACAAGTAC+AGG | + | chr3.3:78107562-78107581 | None:intergenic | 30.0% | |
| ATGGAAAGACGTAATTATCA+AGG | - | chr3.3:78107694-78107713 | MS.gene06786:intron | 30.0% | |
| ATTTAAATTAGCCAGTTGCA+TGG | - | chr3.3:78106474-78106493 | MS.gene06786:CDS | 30.0% | |
| CACATTGTGTGGATATATAT+GGG | - | chr3.3:78106380-78106399 | MS.gene06786:CDS | 30.0% | |
| GAAAATCCAAAACATATACC+CGG | + | chr3.3:78106532-78106551 | None:intergenic | 30.0% | |
| GGAAATCAACTCTTAATGTT+TGG | - | chr3.3:78106918-78106937 | MS.gene06786:intron | 30.0% | |
| GGAACTTATTTAAACTGGAA+TGG | - | chr3.3:78106939-78106958 | MS.gene06786:intron | 30.0% | |
| GTCCGTATTATTTGAAAACT+GGG | - | chr3.3:78108168-78108187 | MS.gene06786:intron | 30.0% | |
| TATCATTGTTGTCGTTATCT+TGG | - | chr3.3:78106736-78106755 | MS.gene06786:CDS | 30.0% | |
| TATCTTGGAATTTATGACCA+AGG | - | chr3.3:78106751-78106770 | MS.gene06786:CDS | 30.0% | |
| TATTGCTATGAAATATGGAG+AGG | + | chr3.3:78107036-78107055 | None:intergenic | 30.0% | |
| TATTGTATCGTAATTGAGTC+CGG | - | chr3.3:78106510-78106529 | MS.gene06786:CDS | 30.0% | |
| TCCGTATTATTTGAAAACTG+GGG | - | chr3.3:78108169-78108188 | MS.gene06786:intron | 30.0% | |
| TTAACATCAACAGAAACTCA+GGG | + | chr3.3:78106350-78106369 | None:intergenic | 30.0% | |
| TTTAACATCAACAGAAACTC+AGG | + | chr3.3:78106351-78106370 | None:intergenic | 30.0% | |
| ! | AAATGTAAAGGCACAAAATG+TGG | - | chr3.3:78107886-78107905 | MS.gene06786:intron | 30.0% |
| ! | AACTGTAGTATTTGGAATTC+AGG | - | chr3.3:78107468-78107487 | MS.gene06786:intron | 30.0% |
| ! | AATTGATCAGTAGTAGCTTT+TGG | + | chr3.3:78108412-78108431 | None:intergenic | 30.0% |
| ! | ACCCCAGTTTTCAAATAATA+CGG | + | chr3.3:78108173-78108192 | None:intergenic | 30.0% |
| ! | ACGAGAATTTTGTAATTGAC+CGG | + | chr3.3:78106017-78106036 | None:intergenic | 30.0% |
| ! | ACTGTAGTATTTGGAATTCA+GGG | - | chr3.3:78107469-78107488 | MS.gene06786:intron | 30.0% |
| ! | ATAGTTTATTGGTCTGATTG+TGG | - | chr3.3:78107102-78107121 | MS.gene06786:intron | 30.0% |
| ! | ATTGAACTGTAATTGACTCT+GGG | - | chr3.3:78106404-78106423 | MS.gene06786:CDS | 30.0% |
| ! | ATTTTCCAAAAGATGGATAC+GGG | - | chr3.3:78106546-78106565 | MS.gene06786:CDS | 30.0% |
| ! | GATTTTCCAAAAGATGGATA+CGG | - | chr3.3:78106545-78106564 | MS.gene06786:CDS | 30.0% |
| ! | TATTGAACTGTAATTGACTC+TGG | - | chr3.3:78106403-78106422 | MS.gene06786:CDS | 30.0% |
| !! | ACCAAGGATATTGTTATTTG+TGG | - | chr3.3:78106767-78106786 | MS.gene06786:CDS | 30.0% |
| !! | GTTTTGGATTTTCCAAAAGA+TGG | - | chr3.3:78106539-78106558 | MS.gene06786:CDS | 30.0% |
| !! | TACCAATTTATCTCTGAAAC+TGG | + | chr3.3:78107394-78107413 | None:intergenic | 30.0% |
| !!! | ATAGGTTTTGGATTTTGCAA+AGG | - | chr3.3:78106428-78106447 | MS.gene06786:CDS | 30.0% |
| AAATATGGAGAGGATACGTT+AGG | + | chr3.3:78107026-78107045 | None:intergenic | 35.0% | |
| AAATGACAGCTAGTTGTGTT+TGG | - | chr3.3:78106791-78106810 | MS.gene06786:CDS | 35.0% | |
| AGCCACAAAAACCAAAAAAG+CGG | + | chr3.3:78107150-78107169 | None:intergenic | 35.0% | |
| ATTGTATCGTAATTGAGTCC+GGG | - | chr3.3:78106511-78106530 | MS.gene06786:CDS | 35.0% | |
| CCATAAGCAAGGTTCATAAA+TGG | + | chr3.3:78107179-78107198 | None:intergenic | 35.0% | |
| CCATTTATGAACCTTGCTTA+TGG | - | chr3.3:78107176-78107195 | MS.gene06786:intron | 35.0% | |
| CTGATCAATTTAAGTGTGGT+CGG | - | chr3.3:78108422-78108441 | MS.gene06786:CDS | 35.0% | |
| GATTCAGCAACAAGAAATTG+TGG | + | chr3.3:78107232-78107251 | None:intergenic | 35.0% | |
| GCACATTGTGTGGATATATA+TGG | - | chr3.3:78106379-78106398 | MS.gene06786:CDS | 35.0% | |
| GTGAGTATGCTTGTAAGAAA+AGG | + | chr3.3:78107205-78107224 | None:intergenic | 35.0% | |
| GTTGTTAGGGTTCAATTCAA+AGG | - | chr3.3:78106168-78106187 | MS.gene06786:CDS | 35.0% | |
| TAGGGTTCAATTCAAAGGAA+GGG | - | chr3.3:78106173-78106192 | MS.gene06786:CDS | 35.0% | |
| TGCCAGTTTCAGAGATAAAT+TGG | - | chr3.3:78107389-78107408 | MS.gene06786:intron | 35.0% | |
| TGTTTGGATTCACCAAAGTT+AGG | - | chr3.3:78106807-78106826 | MS.gene06786:intron | 35.0% | |
| TTAGGGTTCAATTCAAAGGA+AGG | - | chr3.3:78106172-78106191 | MS.gene06786:CDS | 35.0% | |
| TTCTGATGTAATCTTTCAGG+TGG | - | chr3.3:78107598-78107617 | MS.gene06786:intron | 35.0% | |
| TTGATCATAGTCTTCAGCTT+TGG | + | chr3.3:78108013-78108032 | None:intergenic | 35.0% | |
| ! | AAAACTTTTCTCCGGAAATC+AGG | + | chr3.3:78108262-78108281 | None:intergenic | 35.0% |
| ! | AAACTTTTCTCCGGAAATCA+GGG | + | chr3.3:78108261-78108280 | None:intergenic | 35.0% |
| ! | AGTTTGCATTTGGTAATAGG+TGG | + | chr3.3:78108464-78108483 | None:intergenic | 35.0% |
| ! | ATTTTGCAAAGGATGGATAC+GGG | - | chr3.3:78106439-78106458 | MS.gene06786:CDS | 35.0% |
| ! | GAAAAAACTATAACGGGATC+TGG | + | chr3.3:78106881-78106900 | None:intergenic | 35.0% |
| ! | GATTTTGCAAAGGATGGATA+CGG | - | chr3.3:78106438-78106457 | MS.gene06786:CDS | 35.0% |
| ! | TACCAAGCAAAACTTTTCTC+CGG | + | chr3.3:78108270-78108289 | None:intergenic | 35.0% |
| ! | TCTGATGTAATCTTTCAGGT+GGG | - | chr3.3:78107599-78107618 | MS.gene06786:intron | 35.0% |
| ! | TGAACAGCTCAAGAATTTTC+CGG | - | chr3.3:78105995-78106014 | MS.gene06786:CDS | 35.0% |
| ! | TTTAGCTAAGGTCTTTGAAG+AGG | - | chr3.3:78108081-78108100 | MS.gene06786:intron | 35.0% |
| !! | CTGTTGACTTAATTGCGATA+TGG | - | chr3.3:78107675-78107694 | MS.gene06786:intron | 35.0% |
| !! | GAGCTGTGTTGTTCAATTTT+AGG | - | chr3.3:78106301-78106320 | MS.gene06786:CDS | 35.0% |
| !! | GTTTTGGATTTTGCAAAGGA+TGG | - | chr3.3:78106432-78106451 | MS.gene06786:CDS | 35.0% |
| !!! | AGTTCACTTTTTCTTTGTCG+GGG | - | chr3.3:78106704-78106723 | MS.gene06786:CDS | 35.0% |
| !!! | CAGTTCACTTTTTCTTTGTC+GGG | - | chr3.3:78106703-78106722 | MS.gene06786:CDS | 35.0% |
| !!! | GCAGTTCACTTTTTCTTTGT+CGG | - | chr3.3:78106702-78106721 | MS.gene06786:CDS | 35.0% |
| !!! | TACCGCTTTTTTGGTTTTTG+TGG | - | chr3.3:78107145-78107164 | MS.gene06786:intron | 35.0% |
| ACCAAAAAAGCGGTATAGTG+TGG | + | chr3.3:78107140-78107159 | None:intergenic | 40.0% | |
| AGAAAAGGAAGCCATAAGCA+AGG | + | chr3.3:78107190-78107209 | None:intergenic | 40.0% | |
| AGAGGCAGATGAAGATATGA+TGG | - | chr3.3:78108099-78108118 | MS.gene06786:intron | 40.0% | |
| ATCAGAAGAACCCTGATTTC+CGG | - | chr3.3:78108248-78108267 | MS.gene06786:intron | 40.0% | |
| ATTCAGCGCGAGACAAAATA+AGG | - | chr3.3:78108041-78108060 | MS.gene06786:intron | 40.0% | |
| CAAAATTCTCGTCAATACCC+AGG | - | chr3.3:78106025-78106044 | MS.gene06786:CDS | 40.0% | |
| CAAGTGACATAGGTTGTCAT+AGG | + | chr3.3:78108502-78108521 | None:intergenic | 40.0% | |
| CCAAGGTGGAGAAAGTTAAT+GGG | - | chr3.3:78107837-78107856 | MS.gene06786:intron | 40.0% | |
| CTAAGGTTGAGTCAACGAAT+GGG | - | chr3.3:78107750-78107769 | MS.gene06786:intron | 40.0% | |
| GAAGGAGAAAGAGAAAGAGT+TGG | - | chr3.3:78105881-78105900 | MS.gene06786:CDS | 40.0% | |
| GCAGTTAACACAAGTGACAT+AGG | + | chr3.3:78108512-78108531 | None:intergenic | 40.0% | |
| GGATTCACCAAAGTTAGGAT+TGG | - | chr3.3:78106812-78106831 | MS.gene06786:intron | 40.0% | |
| GTGGAGAAAGTTAATGGGAA+TGG | - | chr3.3:78107842-78107861 | MS.gene06786:intron | 40.0% | |
| TAAGGTTGAGTCAACGAATG+GGG | - | chr3.3:78107751-78107770 | MS.gene06786:intron | 40.0% | |
| TACCTTGAACATCAAAGCGA+AGG | - | chr3.3:78107934-78107953 | MS.gene06786:intron | 40.0% | |
| TATCCTGATATCCATGCAAC+TGG | + | chr3.3:78106488-78106507 | None:intergenic | 40.0% | |
| TGACTCAACCTTAGAATCAG+AGG | + | chr3.3:78107744-78107763 | None:intergenic | 40.0% | |
| TTCAGCGCGAGACAAAATAA+GGG | - | chr3.3:78108042-78108061 | MS.gene06786:intron | 40.0% | |
| ! | AGACCTTAGCTAAAGCATCT+CGG | + | chr3.3:78108075-78108094 | None:intergenic | 40.0% |
| ! | AGGACCTATACTTGACCTTT+TGG | + | chr3.3:78108210-78108229 | None:intergenic | 40.0% |
| ! | ATCATAGTCTTCAGCTTTGG+TGG | + | chr3.3:78108010-78108029 | None:intergenic | 40.0% |
| ! | ATTTTCTTTGCCGCAGATAC+TGG | + | chr3.3:78107968-78107987 | None:intergenic | 40.0% |
| ! | CTGTAATTGACTCTGGGTAT+AGG | - | chr3.3:78106410-78106429 | MS.gene06786:CDS | 40.0% |
| ! | GCGAGTTTGCATTTGGTAAT+AGG | + | chr3.3:78108467-78108486 | None:intergenic | 40.0% |
| ! | GGACCTATACTTGACCTTTT+GGG | + | chr3.3:78108209-78108228 | None:intergenic | 40.0% |
| ! | TCTAAGGTTGAGTCAACGAA+TGG | - | chr3.3:78107749-78107768 | MS.gene06786:intron | 40.0% |
| ! | TTCCGGAGAAAAGTTTTGCT+TGG | - | chr3.3:78108265-78108284 | MS.gene06786:intron | 40.0% |
| ! | TTGACTCTGGGTATAGGTTT+TGG | - | chr3.3:78106416-78106435 | MS.gene06786:CDS | 40.0% |
| ! | TTGAGTCCGGGTATATGTTT+TGG | - | chr3.3:78106523-78106542 | MS.gene06786:CDS | 40.0% |
| !!! | GTTCACTTTTTCTTTGTCGG+GGG | - | chr3.3:78106705-78106724 | MS.gene06786:CDS | 40.0% |
| !!! | TTCACTTTTTCTTTGTCGGG+GGG | - | chr3.3:78106706-78106725 | MS.gene06786:CDS | 40.0% |
| CAATTTAAGTGTGGTCGGTG+TGG | - | chr3.3:78108427-78108446 | MS.gene06786:CDS | 45.0% | |
| CAGAAATGGCTAGTGAGCAA+AGG | - | chr3.3:78108326-78108345 | MS.gene06786:intron | 45.0% | |
| CATTTCTGCTGAGCTCATGA+CGG | + | chr3.3:78108314-78108333 | None:intergenic | 45.0% | |
| CCAAAAGATGGATACGGGTA+TGG | - | chr3.3:78106551-78106570 | MS.gene06786:CDS | 45.0% | |
| CCCATTAACTTTCTCCACCT+TGG | + | chr3.3:78107840-78107859 | None:intergenic | 45.0% | |
| CCTACACTAACCCTCAGTAA+CGG | + | chr3.3:78106579-78106598 | None:intergenic | 45.0% | |
| CCTTCAGTGAAGGTTGAGAA+AGG | - | chr3.3:78107806-78107825 | MS.gene06786:intron | 45.0% | |
| CCTTTCTCAACCTTCACTGA+AGG | + | chr3.3:78107809-78107828 | None:intergenic | 45.0% | |
| CTCCTTCGCTTTGATGTTCA+AGG | + | chr3.3:78107939-78107958 | None:intergenic | 45.0% | |
| CTTGAACATCAAAGCGAAGG+AGG | - | chr3.3:78107937-78107956 | MS.gene06786:intron | 45.0% | |
| GAAAACTGGGGTCCTTCAAA+TGG | - | chr3.3:78108181-78108200 | MS.gene06786:intron | 45.0% | |
| GAGCCCAAAAGGTCAAGTAT+AGG | - | chr3.3:78108203-78108222 | MS.gene06786:intron | 45.0% | |
| GCAAAAGAGTCCTTCAGTGA+AGG | - | chr3.3:78107796-78107815 | MS.gene06786:intron | 45.0% | |
| GCCAAGGTGGAGAAAGTTAA+TGG | - | chr3.3:78107836-78107855 | MS.gene06786:intron | 45.0% | |
| GGAGGAAAAACCAGTATCTG+CGG | - | chr3.3:78107955-78107974 | MS.gene06786:intron | 45.0% | |
| GTGTTAACTGCAACAACCGT+TGG | - | chr3.3:78108521-78108540 | MS.gene06786:CDS | 45.0% | |
| TAGCCAGTTGCATGGATATC+AGG | - | chr3.3:78106482-78106501 | MS.gene06786:CDS | 45.0% | |
| TCCTTCAAATGGAGCCCAAA+AGG | - | chr3.3:78108192-78108211 | MS.gene06786:intron | 45.0% | |
| TCTCCGAGATGCTTTAGCTA+AGG | - | chr3.3:78108069-78108088 | MS.gene06786:intron | 45.0% | |
| TTCTTCGCTGGGACTATCAT+CGG | + | chr3.3:78105955-78105974 | None:intergenic | 45.0% | |
| ! | ACCTTTTGGGCTCCATTTGA+AGG | + | chr3.3:78108196-78108215 | None:intergenic | 45.0% |
| ! | CCATACCCGTATCCATCTTT+TGG | + | chr3.3:78106554-78106573 | None:intergenic | 45.0% |
| !! | GCTGAGCTCTGGAAATGTAA+AGG | - | chr3.3:78107874-78107893 | MS.gene06786:intron | 45.0% |
| !! | TGAGAAAGGAGAAAGTGCCA+AGG | - | chr3.3:78107820-78107839 | MS.gene06786:intron | 45.0% |
| !!! | GCCACACTATACCGCTTTTT+TGG | - | chr3.3:78107136-78107155 | MS.gene06786:intron | 45.0% |
| AAAAGCCCGAATGTTCTCCC+TGG | + | chr3.3:78107654-78107673 | None:intergenic | 50.0% | |
| AAACTCTCACCAAGCATCCC+AGG | - | chr3.3:78107633-78107652 | MS.gene06786:intron | 50.0% | |
| AAAGCCCGAATGTTCTCCCT+GGG | + | chr3.3:78107653-78107672 | None:intergenic | 50.0% | |
| AACTCTCACCAAGCATCCCA+GGG | - | chr3.3:78107634-78107653 | MS.gene06786:intron | 50.0% | |
| AATGGGGAGAGAGCTAAAGC+TGG | - | chr3.3:78107767-78107786 | MS.gene06786:intron | 50.0% | |
| AATGTTCTCCCTGGGATGCT+TGG | + | chr3.3:78107645-78107664 | None:intergenic | 50.0% | |
| ACTGTCACTGCCACACGAAT+AGG | + | chr3.3:78108145-78108164 | None:intergenic | 50.0% | |
| AGCATCCCAGGGAGAACATT+CGG | - | chr3.3:78107645-78107664 | MS.gene06786:intron | 50.0% | |
| ATGGGGAGAGAGCTAAAGCT+GGG | - | chr3.3:78107768-78107787 | MS.gene06786:intron | 50.0% | |
| CAGCACTGCGAGTTTGCATT+TGG | + | chr3.3:78108474-78108493 | None:intergenic | 50.0% | |
| CGTCATGAGCTCAGCAGAAA+TGG | - | chr3.3:78108312-78108331 | MS.gene06786:intron | 50.0% | |
| CTGTCACTGCCACACGAATA+GGG | + | chr3.3:78108144-78108163 | None:intergenic | 50.0% | |
| GCAAAGGATGGATACGGGTA+AGG | - | chr3.3:78106444-78106463 | MS.gene06786:CDS | 50.0% | |
| GGTTCATCAAAGCTGAGCTC+TGG | - | chr3.3:78107863-78107882 | MS.gene06786:intron | 50.0% | |
| TATTCGTGTGGCAGTGACAG+TGG | - | chr3.3:78108144-78108163 | MS.gene06786:intron | 50.0% | |
| TGCATGTGACCCTATTCGTG+TGG | - | chr3.3:78108132-78108151 | MS.gene06786:intron | 50.0% | |
| TTGGTACTGTTGAGCCACAG+CGG | - | chr3.3:78108284-78108303 | MS.gene06786:intron | 50.0% | |
| ! | CCGTTACTGAGGGTTAGTGT+AGG | - | chr3.3:78106576-78106595 | MS.gene06786:CDS | 50.0% |
| ! | CTGAGGGTTAGTGTAGGTGT+TGG | - | chr3.3:78106582-78106601 | MS.gene06786:CDS | 50.0% |
| !! | GAAAGGAGAAAGTGCCAAGG+TGG | - | chr3.3:78107823-78107842 | MS.gene06786:intron | 50.0% |
| AGTGTGGTCGGTGTGGACAA+AGG | - | chr3.3:78108434-78108453 | MS.gene06786:CDS | 55.0% | |
| GAACGGGGCCTCTGATTCTA+AGG | - | chr3.3:78107733-78107752 | MS.gene06786:intron | 55.0% | |
| GCATCCCAGGGAGAACATTC+GGG | - | chr3.3:78107646-78107665 | MS.gene06786:intron | 55.0% | |
| GGGTATGGCACCGTTACTGA+GGG | - | chr3.3:78106566-78106585 | MS.gene06786:CDS | 55.0% | |
| GTACGAAGCCGCGAAGAAAG+CGG | - | chr3.3:78105911-78105930 | MS.gene06786:CDS | 55.0% | |
| GTTCAAGCGCATCGAGGCAA+CGG | + | chr3.3:78105980-78105999 | None:intergenic | 55.0% | |
| TGAGCTGTTCAAGCGCATCG+AGG | + | chr3.3:78105986-78106005 | None:intergenic | 55.0% | |
| TTCAAGCGCATCGAGGCAAC+GGG | + | chr3.3:78105979-78105998 | None:intergenic | 55.0% | |
| TTCGCTGGGACTATCATCGG+TGG | + | chr3.3:78105952-78105971 | None:intergenic | 55.0% | |
| TTTCTTTGTCGGGGGGCAGA+AGG | - | chr3.3:78106713-78106732 | MS.gene06786:CDS | 55.0% | |
| ! | AGGCAACGGGTTTCTTCGCT+GGG | + | chr3.3:78105966-78105985 | None:intergenic | 55.0% |
| ! | GCTTTGTTCGACTGTGAGCG+TGG | - | chr3.3:78108379-78108398 | MS.gene06786:intron | 55.0% |
| CGGGTATGGCACCGTTACTG+AGG | - | chr3.3:78106565-78106584 | MS.gene06786:CDS | 60.0% | |
| GCTGGGACTATCATCGGTGG+AGG | + | chr3.3:78105949-78105968 | None:intergenic | 60.0% | |
| GGGACTATCATCGGTGGAGG+TGG | + | chr3.3:78105946-78105965 | None:intergenic | 60.0% | |
| TACTGTTGAGCCACAGCGGC+TGG | - | chr3.3:78108288-78108307 | MS.gene06786:intron | 60.0% | |
| ! | AGCATCCGCCGCTTTCTTCG+CGG | + | chr3.3:78105922-78105941 | None:intergenic | 60.0% |
| ! | GAGGCAACGGGTTTCTTCGC+TGG | + | chr3.3:78105967-78105986 | None:intergenic | 60.0% |
| CGAAGCCGCGAAGAAAGCGG+CGG | - | chr3.3:78105914-78105933 | MS.gene06786:CDS | 65.0% | |
| CTTTGGTGGAGCAGCAGCGC+TGG | + | chr3.3:78107996-78108015 | None:intergenic | 65.0% | |
| CTCATGACGGCCAGCCGCTG+TGG | + | chr3.3:78108301-78108320 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 78105876 | 78108555 | 78105876 | ID=MS.gene06786 |
| chr3.3 | mRNA | 78105876 | 78108555 | 78105876 | ID=MS.gene06786.t1;Parent=MS.gene06786 |
| chr3.3 | exon | 78108385 | 78108555 | 78108385 | ID=MS.gene06786.t1.exon1;Parent=MS.gene06786.t1 |
| chr3.3 | CDS | 78108385 | 78108555 | 78108385 | ID=cds.MS.gene06786.t1;Parent=MS.gene06786.t1 |
| chr3.3 | exon | 78105876 | 78106814 | 78105876 | ID=MS.gene06786.t1.exon2;Parent=MS.gene06786.t1 |
| chr3.3 | CDS | 78105876 | 78106814 | 78105876 | ID=cds.MS.gene06786.t1;Parent=MS.gene06786.t1 |
| Gene Sequence |
| Protein sequence |
