Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073207.t1 | XP_003596650.1 | 100 | 114 | 0 | 0 | 1 | 114 | 1 | 114 | 7.50E-57 | 229.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073207.t1 | A6MZM2 | 89.6 | 115 | 11 | 1 | 1 | 114 | 1 | 115 | 1.2e-52 | 206.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073207.t1 | G7IJN1 | 100.0 | 114 | 0 | 0 | 1 | 114 | 1 | 114 | 5.4e-57 | 229.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049129 | MS.gene073207 | -0.841737 | 3.96E-58 | -1.69E-46 |
| MS.gene04918 | MS.gene073207 | 0.824897 | 6.29E-54 | -1.69E-46 |
| MS.gene04920 | MS.gene073207 | 0.806686 | 7.29E-50 | -1.69E-46 |
| MS.gene049368 | MS.gene073207 | 0.805851 | 1.09E-49 | -1.69E-46 |
| MS.gene049411 | MS.gene073207 | 0.896366 | 3.95E-76 | -1.69E-46 |
| MS.gene049580 | MS.gene073207 | 0.8109 | 9.16E-51 | -1.69E-46 |
| MS.gene049680 | MS.gene073207 | 0.870357 | 1.55E-66 | -1.69E-46 |
| MS.gene049807 | MS.gene073207 | 0.817918 | 2.57E-52 | -1.69E-46 |
| MS.gene05029 | MS.gene073207 | 0.849642 | 2.84E-60 | -1.69E-46 |
| MS.gene050437 | MS.gene073207 | 0.833814 | 4.30E-56 | -1.69E-46 |
| MS.gene050646 | MS.gene073207 | 0.801335 | 9.45E-49 | -1.69E-46 |
| MS.gene050689 | MS.gene073207 | 0.822351 | 2.48E-53 | -1.69E-46 |
| MS.gene050752 | MS.gene073207 | 0.903545 | 3.10E-79 | -1.69E-46 |
| MS.gene050838 | MS.gene073207 | 0.804785 | 1.83E-49 | -1.69E-46 |
| MS.gene050945 | MS.gene073207 | 0.853638 | 2.09E-61 | -1.69E-46 |
| MS.gene050955 | MS.gene073207 | 0.907335 | 5.66E-81 | -1.69E-46 |
| MS.gene050985 | MS.gene073207 | 0.840052 | 1.10E-57 | -1.69E-46 |
| MS.gene051003 | MS.gene073207 | 0.857896 | 1.19E-62 | -1.69E-46 |
| MS.gene051043 | MS.gene073207 | 0.848014 | 8.03E-60 | -1.69E-46 |
| MS.gene051234 | MS.gene073207 | 0.884597 | 1.67E-71 | -1.69E-46 |
| MS.gene051343 | MS.gene073207 | 0.83002 | 3.72E-55 | -1.69E-46 |
| MS.gene051699 | MS.gene073207 | 0.81378 | 2.15E-51 | -1.69E-46 |
| MS.gene051716 | MS.gene073207 | 0.811551 | 6.62E-51 | -1.69E-46 |
| MS.gene051731 | MS.gene073207 | 0.82007 | 8.33E-53 | -1.69E-46 |
| MS.gene051902 | MS.gene073207 | 0.817736 | 2.82E-52 | -1.69E-46 |
| MS.gene051975 | MS.gene073207 | 0.804056 | 2.59E-49 | -1.69E-46 |
| MS.gene052072 | MS.gene073207 | 0.884542 | 1.75E-71 | -1.69E-46 |
| MS.gene052296 | MS.gene073207 | 0.841431 | 4.77E-58 | -1.69E-46 |
| MS.gene052335 | MS.gene073207 | 0.804473 | 2.12E-49 | -1.69E-46 |
| MS.gene052479 | MS.gene073207 | 0.827787 | 1.29E-54 | -1.69E-46 |
| MS.gene052533 | MS.gene073207 | 0.826172 | 3.14E-54 | -1.69E-46 |
| MS.gene052793 | MS.gene073207 | 0.860564 | 1.89E-63 | -1.69E-46 |
| MS.gene052941 | MS.gene073207 | 0.80405 | 2.60E-49 | -1.69E-46 |
| MS.gene052947 | MS.gene073207 | 0.817294 | 3.55E-52 | -1.69E-46 |
| MS.gene052955 | MS.gene073207 | 0.805502 | 1.29E-49 | -1.69E-46 |
| MS.gene053228 | MS.gene073207 | 0.811385 | 7.19E-51 | -1.69E-46 |
| MS.gene05364 | MS.gene073207 | 0.806522 | 7.90E-50 | -1.69E-46 |
| MS.gene053879 | MS.gene073207 | 0.831554 | 1.56E-55 | -1.69E-46 |
| MS.gene053931 | MS.gene073207 | 0.801161 | 1.03E-48 | -1.69E-46 |
| MS.gene054004 | MS.gene073207 | 0.883906 | 3.02E-71 | -1.69E-46 |
| MS.gene054005 | MS.gene073207 | 0.85467 | 1.05E-61 | -1.69E-46 |
| MS.gene054142 | MS.gene073207 | 0.808053 | 3.74E-50 | -1.69E-46 |
| MS.gene054403 | MS.gene073207 | 0.907411 | 5.22E-81 | -1.69E-46 |
| MS.gene054413 | MS.gene073207 | 0.840437 | 8.70E-58 | -1.69E-46 |
| MS.gene05469 | MS.gene073207 | 0.832225 | 1.07E-55 | -1.69E-46 |
| MS.gene054709 | MS.gene073207 | 0.823292 | 1.50E-53 | -1.69E-46 |
| MS.gene055150 | MS.gene073207 | 0.82525 | 5.19E-54 | -1.69E-46 |
| MS.gene055339 | MS.gene073207 | 0.848764 | 4.98E-60 | -1.69E-46 |
| MS.gene055555 | MS.gene073207 | 0.823655 | 1.23E-53 | -1.69E-46 |
| MS.gene055765 | MS.gene073207 | 0.847529 | 1.09E-59 | -1.69E-46 |
| MS.gene05648 | MS.gene073207 | 0.804581 | 2.02E-49 | -1.69E-46 |
| MS.gene056693 | MS.gene073207 | 0.831733 | 1.41E-55 | -1.69E-46 |
| MS.gene056699 | MS.gene073207 | 0.814074 | 1.85E-51 | -1.69E-46 |
| MS.gene056881 | MS.gene073207 | 0.815585 | 8.57E-52 | -1.69E-46 |
| MS.gene056986 | MS.gene073207 | 0.806864 | 6.69E-50 | -1.69E-46 |
| MS.gene057102 | MS.gene073207 | 0.877542 | 5.78E-69 | -1.69E-46 |
| MS.gene057130 | MS.gene073207 | 0.801599 | 8.34E-49 | -1.69E-46 |
| MS.gene057694 | MS.gene073207 | 0.857492 | 1.57E-62 | -1.69E-46 |
| MS.gene057705 | MS.gene073207 | 0.850982 | 1.19E-60 | -1.69E-46 |
| MS.gene057999 | MS.gene073207 | 0.817854 | 2.66E-52 | -1.69E-46 |
| MS.gene058008 | MS.gene073207 | 0.819945 | 8.90E-53 | -1.69E-46 |
| MS.gene058149 | MS.gene073207 | 0.829671 | 4.52E-55 | -1.69E-46 |
| MS.gene058245 | MS.gene073207 | 0.847161 | 1.38E-59 | -1.69E-46 |
| MS.gene058781 | MS.gene073207 | 0.808496 | 3.01E-50 | -1.69E-46 |
| MS.gene058783 | MS.gene073207 | 0.804786 | 1.83E-49 | -1.69E-46 |
| MS.gene059146 | MS.gene073207 | 0.852028 | 6.04E-61 | -1.69E-46 |
| MS.gene059227 | MS.gene073207 | 0.831955 | 1.24E-55 | -1.69E-46 |
| MS.gene059778 | MS.gene073207 | 0.804301 | 2.31E-49 | -1.69E-46 |
| MS.gene059802 | MS.gene073207 | 0.869953 | 2.10E-66 | -1.69E-46 |
| MS.gene05985 | MS.gene073207 | -0.860595 | 1.85E-63 | -1.69E-46 |
| MS.gene060244 | MS.gene073207 | 0.848477 | 5.98E-60 | -1.69E-46 |
| MS.gene060763 | MS.gene073207 | 0.819761 | 9.80E-53 | -1.69E-46 |
| MS.gene060935 | MS.gene073207 | 0.845576 | 3.73E-59 | -1.69E-46 |
| MS.gene060937 | MS.gene073207 | 0.844047 | 9.63E-59 | -1.69E-46 |
| MS.gene061100 | MS.gene073207 | 0.833787 | 4.36E-56 | -1.69E-46 |
| MS.gene061243 | MS.gene073207 | 0.827636 | 1.40E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073207.t1 | MTR_2g083180 | 100.000 | 114 | 0 | 0 | 1 | 114 | 1 | 114 | 1.67e-82 | 236 |
| MS.gene073207.t1 | MTR_2g083180 | 96.262 | 107 | 4 | 0 | 8 | 114 | 10 | 116 | 2.99e-73 | 213 |
| MS.gene073207.t1 | MTR_4g046733 | 87.719 | 114 | 13 | 1 | 1 | 114 | 1 | 113 | 3.69e-72 | 210 |
| MS.gene073207.t1 | MTR_2g083180 | 91.228 | 114 | 8 | 1 | 1 | 112 | 1 | 114 | 1.32e-71 | 209 |
| MS.gene073207.t1 | MTR_2g083180 | 100.000 | 100 | 0 | 0 | 1 | 100 | 1 | 100 | 1.40e-71 | 209 |
| MS.gene073207.t1 | MTR_3g051950 | 77.193 | 114 | 24 | 1 | 1 | 114 | 1 | 112 | 3.86e-60 | 180 |
| MS.gene073207.t1 | MTR_2g083180 | 100.000 | 83 | 0 | 0 | 1 | 83 | 1 | 83 | 2.71e-58 | 175 |
| MS.gene073207.t1 | MTR_5g092820 | 72.973 | 111 | 28 | 1 | 4 | 114 | 2 | 110 | 1.86e-55 | 168 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073207.t1 | AT4G27130 | 86.842 | 114 | 14 | 1 | 1 | 114 | 1 | 113 | 9.73e-72 | 209 |
| MS.gene073207.t1 | AT5G54760 | 85.965 | 114 | 15 | 1 | 1 | 114 | 1 | 113 | 4.83e-71 | 207 |
| MS.gene073207.t1 | AT5G54760 | 85.965 | 114 | 15 | 1 | 1 | 114 | 1 | 113 | 4.83e-71 | 207 |
| MS.gene073207.t1 | AT5G54760 | 85.965 | 114 | 15 | 1 | 1 | 114 | 1 | 113 | 4.83e-71 | 207 |
| MS.gene073207.t1 | AT5G54760 | 85.965 | 114 | 15 | 1 | 1 | 114 | 1 | 113 | 4.83e-71 | 207 |
| MS.gene073207.t1 | AT1G54290 | 85.088 | 114 | 16 | 1 | 1 | 114 | 1 | 113 | 2.45e-70 | 206 |
| MS.gene073207.t1 | AT5G54940 | 74.561 | 114 | 27 | 1 | 1 | 114 | 1 | 112 | 2.95e-58 | 175 |
| MS.gene073207.t1 | AT5G54940 | 74.561 | 114 | 27 | 1 | 1 | 114 | 1 | 112 | 2.95e-58 | 175 |
| MS.gene073207.t1 | AT5G54940 | 74.561 | 114 | 27 | 1 | 1 | 114 | 1 | 112 | 2.95e-58 | 175 |
Find 25 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATGCTGAGGACGCCGGTGC+TGG | 0.285317 | 2.3:+14493772 | MS.gene073207:CDS |
| AAGGAGCATATTAAAATTCA+TGG | 0.292939 | 2.3:+14495058 | MS.gene073207:CDS |
| TTCGCTGCTGTATACGAATA+TGG | 0.326573 | 2.3:-14493813 | None:intergenic |
| ATTCATTACCTGGACTAAAA+AGG | 0.327921 | 2.3:-14494082 | None:intergenic |
| CCTGTCCTTGCTCTGGGTCC+TGG | 0.375764 | 2.3:-14493942 | None:intergenic |
| AGACATACCTGTCCTTGCTC+TGG | 0.415595 | 2.3:-14493949 | None:intergenic |
| TACAACAAAACTCCTTCTTA+AGG | 0.416659 | 2.3:-14493906 | None:intergenic |
| GACATACCTGTCCTTGCTCT+GGG | 0.463686 | 2.3:-14493948 | None:intergenic |
| TGAATTCTTTCTTCAATCCC+TGG | 0.465760 | 2.3:-14493861 | None:intergenic |
| GTGTAGGTTATTCAACTTCA+AGG | 0.470369 | 2.3:+14494036 | MS.gene073207:intron |
| TTGTAATGGTACAGTTGTCC+AGG | 0.470439 | 2.3:+14493924 | MS.gene073207:CDS |
| ATGCTGAGGACGCCGGTGCT+GGG | 0.477491 | 2.3:+14493773 | MS.gene073207:CDS |
| TCAGCATTTGCCTCAGCAAA+AGG | 0.478903 | 2.3:-14493757 | None:intergenic |
| ATTCGTATACAGCAGCGAAA+TGG | 0.491023 | 2.3:+14493817 | MS.gene073207:CDS |
| CGCCGGTGCTGGGTCATCAA+AGG | 0.522725 | 2.3:+14493783 | MS.gene073207:CDS |
| ACAGGCTGGAATCGTGAAGA+AGG | 0.545416 | 2.3:+14495039 | MS.gene073207:intron |
| AAAAGCTTGACAACTGTCCA+GGG | 0.558576 | 2.3:+14493844 | MS.gene073207:CDS |
| TTCAACTTCAAGGCGATCAG+AGG | 0.577444 | 2.3:+14494046 | MS.gene073207:CDS |
| GAGGCAAATGCTGAGGACGC+CGG | 0.578099 | 2.3:+14493766 | MS.gene073207:CDS |
| CTCCTTTGATGACCCAGCAC+CGG | 0.583753 | 2.3:-14493785 | None:intergenic |
| GATTCTGAAAGACCTTAAGA+AGG | 0.584832 | 2.3:+14493894 | MS.gene073207:CDS |
| CCAGGACCCAGAGCAAGGAC+AGG | 0.587475 | 2.3:+14493942 | MS.gene073207:CDS |
| GCACAAATTCCTACTGCCTA+CGG | 0.609588 | 2.3:+14492801 | MS.gene073207:CDS |
| GTTGTCCAGGACCCAGAGCA+AGG | 0.630590 | 2.3:+14493937 | MS.gene073207:CDS |
| TCCAACTTACCGTAGGCAGT+AGG | 0.690363 | 2.3:-14492810 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTTATAAGTAAAAAAAAAAT+AGG | - | chr2.3:14493236-14493255 | None:intergenic | 10.0% |
| !!! | TTTGAATTTTTATTATCTTT+AGG | + | chr2.3:14492999-14493018 | MS.gene073207:intron | 10.0% |
| !! | AGAAAATATCAAAAGTAAAA+CGG | - | chr2.3:14494213-14494232 | None:intergenic | 15.0% |
| !! | TAAACATAAAATAATGTCAA+AGG | - | chr2.3:14494440-14494459 | None:intergenic | 15.0% |
| !! | TTTACCCATAAATTTATATT+TGG | + | chr2.3:14494731-14494750 | MS.gene073207:intron | 15.0% |
| !!! | AAATTGAATTTTTAAAGCTT+AGG | + | chr2.3:14493548-14493567 | MS.gene073207:intron | 15.0% |
| !!! | CTTCAAATAACATTTTTTTA+TGG | + | chr2.3:14494014-14494033 | MS.gene073207:intron | 15.0% |
| !!! | GTTTTTAATGTTTATACTTT+GGG | + | chr2.3:14493413-14493432 | MS.gene073207:intron | 15.0% |
| !!! | TTTCTAAAATAGTTTTTTCT+GGG | + | chr2.3:14493366-14493385 | MS.gene073207:intron | 15.0% |
| !!! | TTTTCTAAAATAGTTTTTTC+TGG | + | chr2.3:14493365-14493384 | MS.gene073207:intron | 15.0% |
| !! | AGTAAAACGGAAAAATAAAA+AGG | - | chr2.3:14494200-14494219 | None:intergenic | 20.0% |
| !! | ATCCACCAAATATAAATTTA+TGG | - | chr2.3:14494739-14494758 | None:intergenic | 20.0% |
| !! | GTAAAACGGAAAAATAAAAA+GGG | - | chr2.3:14494199-14494218 | None:intergenic | 20.0% |
| !! | TCCACCAAATATAAATTTAT+GGG | - | chr2.3:14494738-14494757 | None:intergenic | 20.0% |
| !!! | AAAAAGAAGTCTGATTTTAA+AGG | + | chr2.3:14494305-14494324 | MS.gene073207:intron | 20.0% |
| !!! | ATAACATTTTTTTATGGTGT+AGG | + | chr2.3:14494020-14494039 | MS.gene073207:intron | 20.0% |
| !!! | ATATTGCTTTTACTTTTACT+TGG | + | chr2.3:14493197-14493216 | MS.gene073207:intron | 20.0% |
| !!! | ATCAACTATTTTTACTAAAC+AGG | + | chr2.3:14494537-14494556 | MS.gene073207:intron | 20.0% |
| !!! | GGTTTTTAATGTTTATACTT+TGG | + | chr2.3:14493412-14493431 | MS.gene073207:intron | 20.0% |
| !!! | GTAAAAATAGTTGATATTCT+AGG | - | chr2.3:14494532-14494551 | None:intergenic | 20.0% |
| !!! | TCAACTATTTTTACTAAACA+GGG | + | chr2.3:14494538-14494557 | MS.gene073207:intron | 20.0% |
| !!! | TTCTAAAATAGTTTTTTCTG+GGG | + | chr2.3:14493367-14493386 | MS.gene073207:intron | 20.0% |
| !!! | TTGATCTGAAATAGTATTTT+GGG | + | chr2.3:14493509-14493528 | MS.gene073207:intron | 20.0% |
| !!! | TTTACTTTTGATATTTTCTG+TGG | + | chr2.3:14494214-14494233 | MS.gene073207:intron | 20.0% |
| !!! | TTTGATCTGAAATAGTATTT+TGG | + | chr2.3:14493508-14493527 | MS.gene073207:intron | 20.0% |
| ! | ACCCATAAATTTATATTTGG+TGG | + | chr2.3:14494734-14494753 | MS.gene073207:intron | 25.0% |
| ! | AGATGAAGAATAGAAATAGA+TGG | + | chr2.3:14493639-14493658 | MS.gene073207:intron | 25.0% |
| ! | ATAGAAGAATTTCTCATTTC+TGG | - | chr2.3:14493106-14493125 | None:intergenic | 25.0% |
| ! | TATTCATGTCATTCATCATA+TGG | + | chr2.3:14494885-14494904 | MS.gene073207:intron | 25.0% |
| ! | TCAAAGTTATGTACAATGAT+TGG | - | chr2.3:14493493-14493512 | None:intergenic | 25.0% |
| ! | TTAAGCATCTTGTTCAATAA+TGG | - | chr2.3:14493464-14493483 | None:intergenic | 25.0% |
| ! | TTAATGAAAATAGAGCTGTT+TGG | + | chr2.3:14494364-14494383 | MS.gene073207:intron | 25.0% |
| ! | TTATTTGAATTAAGCATAGC+AGG | - | chr2.3:14494403-14494422 | None:intergenic | 25.0% |
| !! | AAATGTTATTTGAAGCAACA+AGG | - | chr2.3:14494009-14494028 | None:intergenic | 25.0% |
| !! | AAGGAGCATATTAAAATTCA+TGG | + | chr2.3:14495058-14495077 | MS.gene073207:CDS | 25.0% |
| !! | AATGTTATTTGAAGCAACAA+GGG | - | chr2.3:14494008-14494027 | None:intergenic | 25.0% |
| !!! | TGATCTGAAATAGTATTTTG+GGG | + | chr2.3:14493510-14493529 | MS.gene073207:intron | 25.0% |
| AAAAAATTCTGTGCGATTCT+TGG | - | chr2.3:14493348-14493367 | None:intergenic | 30.0% | |
| AATAAACGTTTGTCACTACA+TGG | - | chr2.3:14494869-14494888 | None:intergenic | 30.0% | |
| AATGAATGACTTCACATCTT+TGG | + | chr2.3:14494098-14494117 | MS.gene073207:intron | 30.0% | |
| AGAATATAACAGATCGTTGT+AGG | - | chr2.3:14494811-14494830 | None:intergenic | 30.0% | |
| ATATGATATATGACTCCTGT+GGG | + | chr2.3:14493712-14493731 | MS.gene073207:intron | 30.0% | |
| ATTCATTACCTGGACTAAAA+AGG | - | chr2.3:14494085-14494104 | None:intergenic | 30.0% | |
| CAATTATACTGTGTACTGTT+GGG | + | chr2.3:14492928-14492947 | MS.gene073207:intron | 30.0% | |
| GAATTTACTAGTCAATTGTC+AGG | - | chr2.3:14493040-14493059 | None:intergenic | 30.0% | |
| GATTTAGATACGTAAATCAC+TGG | + | chr2.3:14494777-14494796 | MS.gene073207:intron | 30.0% | |
| TACAACAAAACTCCTTCTTA+AGG | - | chr2.3:14493909-14493928 | None:intergenic | 30.0% | |
| TATCTAAATCCGTTCTATAG+AGG | - | chr2.3:14494767-14494786 | None:intergenic | 30.0% | |
| TCAATTATACTGTGTACTGT+TGG | + | chr2.3:14492927-14492946 | MS.gene073207:intron | 30.0% | |
| ! | AATTTTAGATCCTTTTGCTG+AGG | + | chr2.3:14493747-14493766 | MS.gene073207:intron | 30.0% |
| ! | ATGTTATTTGAAGCAACAAG+GGG | - | chr2.3:14494007-14494026 | None:intergenic | 30.0% |
| !! | AATAAAAAGGGTACTTAACC+AGG | - | chr2.3:14494187-14494206 | None:intergenic | 30.0% |
| !! | ATAAAAAGGGTACTTAACCA+GGG | - | chr2.3:14494186-14494205 | None:intergenic | 30.0% |
| !!! | AAGAAGGAGTTTTGTTGTAA+TGG | + | chr2.3:14493910-14493929 | MS.gene073207:CDS | 30.0% |
| AAGGCATATGCTTAGCTTAT+TGG | + | chr2.3:14494324-14494343 | MS.gene073207:intron | 35.0% | |
| AGGATCTTAACGTTTGTGAA+GGG | + | chr2.3:14493568-14493587 | MS.gene073207:intron | 35.0% | |
| ATGTGAAGTCATTCATTACC+TGG | - | chr2.3:14494095-14494114 | None:intergenic | 35.0% | |
| GATATGATATATGACTCCTG+TGG | + | chr2.3:14493711-14493730 | MS.gene073207:intron | 35.0% | |
| GTAAGAAAGCAACTCATTTC+TGG | - | chr2.3:14493175-14493194 | None:intergenic | 35.0% | |
| GTGTAGGTTATTCAACTTCA+AGG | + | chr2.3:14494036-14494055 | MS.gene073207:intron | 35.0% | |
| TACATAATGAATGCTGTGTG+AGG | - | chr2.3:14493620-14493639 | None:intergenic | 35.0% | |
| TAGGATCTTAACGTTTGTGA+AGG | + | chr2.3:14493567-14493586 | MS.gene073207:intron | 35.0% | |
| TATTCATGCCTTTCATTGCA+TGG | + | chr2.3:14494928-14494947 | MS.gene073207:intron | 35.0% | |
| TGAATTCTTTCTTCAATCCC+TGG | - | chr2.3:14493864-14493883 | None:intergenic | 35.0% | |
| TTCAAATTCACAAGTGCAGA+GGG | - | chr2.3:14495020-14495039 | None:intergenic | 35.0% | |
| TTCATGATATGCAGTCATTC+TGG | + | chr2.3:14492884-14492903 | MS.gene073207:intron | 35.0% | |
| ! | ATATGCAGTCATTCTGGAAA+GGG | + | chr2.3:14492890-14492909 | MS.gene073207:intron | 35.0% |
| ! | GATTCTGAAAGACCTTAAGA+AGG | + | chr2.3:14493894-14493913 | MS.gene073207:CDS | 35.0% |
| ! | GCTTAACGTGGTTTAAGATT+GGG | + | chr2.3:14493391-14493410 | MS.gene073207:intron | 35.0% |
| ! | TCAGTTTTCCATGCAATGAA+AGG | - | chr2.3:14494939-14494958 | None:intergenic | 35.0% |
| ! | TGCTTAACGTGGTTTAAGAT+TGG | + | chr2.3:14493390-14493409 | MS.gene073207:intron | 35.0% |
| ! | TTTGTTAGCTTCTCAGCAAT+AGG | + | chr2.3:14494493-14494512 | MS.gene073207:intron | 35.0% |
| !! | AATCTGAGACAGCATTTTCA+AGG | - | chr2.3:14492956-14492975 | None:intergenic | 35.0% |
| !! | CATTTCTGGAGTTTAGTTGA+AGG | - | chr2.3:14493161-14493180 | None:intergenic | 35.0% |
| !!! | AATAGTATTTTGGGGTCTTG+AGG | + | chr2.3:14493518-14493537 | MS.gene073207:intron | 35.0% |
| !!! | GTGTTTTTTTCCTCCTGATT+GGG | + | chr2.3:14494568-14494587 | MS.gene073207:intron | 35.0% |
| !!! | TGTGTTTTTTTCCTCCTGAT+TGG | + | chr2.3:14494567-14494586 | MS.gene073207:intron | 35.0% |
| AAAAAGCTTGACAACTGTCC+AGG | + | chr2.3:14493843-14493862 | MS.gene073207:CDS | 40.0% | |
| AAAAGCTTGACAACTGTCCA+GGG | + | chr2.3:14493844-14493863 | MS.gene073207:CDS | 40.0% | |
| ACTTATAGAGTTGCCTTTCC+CGG | + | chr2.3:14494691-14494710 | MS.gene073207:intron | 40.0% | |
| ACTTGTGAATTTGAACAGGC+TGG | + | chr2.3:14495025-14495044 | MS.gene073207:intron | 40.0% | |
| AGGAGGAAAAAAACACACTG+AGG | - | chr2.3:14494564-14494583 | None:intergenic | 40.0% | |
| ATAGAGTTCCAACTTACCGT+AGG | - | chr2.3:14492820-14492839 | None:intergenic | 40.0% | |
| ATTCGTATACAGCAGCGAAA+TGG | + | chr2.3:14493817-14493836 | MS.gene073207:CDS | 40.0% | |
| CTGCACTTGTGAATTTGAAC+AGG | + | chr2.3:14495021-14495040 | MS.gene073207:intron | 40.0% | |
| GGATGTATGCCTCTATAGAA+CGG | + | chr2.3:14494755-14494774 | MS.gene073207:intron | 40.0% | |
| GTACAAGATCATTCCCAATC+AGG | - | chr2.3:14494584-14494603 | None:intergenic | 40.0% | |
| GTTCAAATTCACAAGTGCAG+AGG | - | chr2.3:14495021-14495040 | None:intergenic | 40.0% | |
| TACTTAACCAGGGAAACAGA+TGG | - | chr2.3:14494176-14494195 | None:intergenic | 40.0% | |
| TTCGCTGCTGTATACGAATA+TGG | - | chr2.3:14493816-14493835 | None:intergenic | 40.0% | |
| TTGTAATGGTACAGTTGTCC+AGG | + | chr2.3:14493924-14493943 | MS.gene073207:CDS | 40.0% | |
| ! | GATATGCAGTCATTCTGGAA+AGG | + | chr2.3:14492889-14492908 | MS.gene073207:intron | 40.0% |
| ! | TGTCTGAGATCAAGTTTCTC+TGG | + | chr2.3:14494257-14494276 | MS.gene073207:intron | 40.0% |
| !! | TGTGTCTACCTTTTTAGTCC+AGG | + | chr2.3:14494074-14494093 | MS.gene073207:CDS | 40.0% |
| !! | TTGGGTTTTATCGTGTGTGA+AGG | + | chr2.3:14493431-14493450 | MS.gene073207:intron | 40.0% |
| AAGACTGTTTACCCAAGTCC+CGG | - | chr2.3:14494713-14494732 | None:intergenic | 45.0% | |
| ATAAGTGCCAACCTGCTCAA+AGG | - | chr2.3:14494677-14494696 | None:intergenic | 45.0% | |
| CAAGATCATTCCCAATCAGG+AGG | - | chr2.3:14494581-14494600 | None:intergenic | 45.0% | |
| CTTATAGAGTTGCCTTTCCC+GGG | + | chr2.3:14494692-14494711 | MS.gene073207:intron | 45.0% | |
| GACAGACAACACGCATCAAT+AGG | - | chr2.3:14492849-14492868 | None:intergenic | 45.0% | |
| GCACAAATTCCTACTGCCTA+CGG | + | chr2.3:14492801-14492820 | MS.gene073207:CDS | 45.0% | |
| GTGGCGTAATTTGATCTGAG+TGG | + | chr2.3:14494233-14494252 | MS.gene073207:intron | 45.0% | |
| TCAGCATTTGCCTCAGCAAA+AGG | - | chr2.3:14493760-14493779 | None:intergenic | 45.0% | |
| TTCAACTTCAAGGCGATCAG+AGG | + | chr2.3:14494046-14494065 | MS.gene073207:CDS | 45.0% | |
| TTCACAAGTGCAGAGGGATA+AGG | - | chr2.3:14495014-14495033 | None:intergenic | 45.0% | |
| ! | TTTTGCTGAGGCAAATGCTG+AGG | + | chr2.3:14493759-14493778 | MS.gene073207:CDS | 45.0% |
| !!! | AGTATTTTGGGGTCTTGAGG+TGG | + | chr2.3:14493521-14493540 | MS.gene073207:intron | 45.0% |
| !!! | TTTTTCTGGGGTGCTTAACG+TGG | + | chr2.3:14493379-14493398 | MS.gene073207:intron | 45.0% |
| !! | TTATAAGTAAAAAAAAAATA+GGG | - | chr2.3:14493235-14493254 | None:intergenic | 5.0% |
| ACAGGCTGGAATCGTGAAGA+AGG | + | chr2.3:14495039-14495058 | MS.gene073207:intron | 50.0% | |
| AGACATACCTGTCCTTGCTC+TGG | - | chr2.3:14493952-14493971 | None:intergenic | 50.0% | |
| AGACTGTTTACCCAAGTCCC+GGG | - | chr2.3:14494712-14494731 | None:intergenic | 50.0% | |
| ATTGTTGCCACACATCCCAC+AGG | - | chr2.3:14493730-14493749 | None:intergenic | 50.0% | |
| CAGGGAAACAGATGGATCTC+AGG | - | chr2.3:14494168-14494187 | None:intergenic | 50.0% | |
| CTGAGATCCATCTGTTTCCC+TGG | + | chr2.3:14494166-14494185 | MS.gene073207:intron | 50.0% | |
| GACATACCTGTCCTTGCTCT+GGG | - | chr2.3:14493951-14493970 | None:intergenic | 50.0% | |
| TATGACTCCTGTGGGATGTG+TGG | + | chr2.3:14493720-14493739 | MS.gene073207:intron | 50.0% | |
| TCCAACTTACCGTAGGCAGT+AGG | - | chr2.3:14492813-14492832 | None:intergenic | 50.0% | |
| TCCTACTGCCTACGGTAAGT+TGG | + | chr2.3:14492809-14492828 | MS.gene073207:intron | 50.0% | |
| AGTTGCCTTTCCCGGGACTT+GGG | + | chr2.3:14494699-14494718 | MS.gene073207:intron | 55.0% | |
| CACCAGTCCTTTGAGCAGGT+TGG | + | chr2.3:14494667-14494686 | MS.gene073207:intron | 55.0% | |
| GTTTACCCAAGTCCCGGGAA+AGG | - | chr2.3:14494707-14494726 | None:intergenic | 55.0% | |
| TGCCAACCTGCTCAAAGGAC+TGG | - | chr2.3:14494672-14494691 | None:intergenic | 55.0% | |
| TTCGCACCAGTCCTTTGAGC+AGG | + | chr2.3:14494663-14494682 | MS.gene073207:intron | 55.0% | |
| ! | CTCCTTTGATGACCCAGCAC+CGG | - | chr2.3:14493788-14493807 | None:intergenic | 55.0% |
| GAGGCAAATGCTGAGGACGC+CGG | + | chr2.3:14493766-14493785 | MS.gene073207:CDS | 60.0% | |
| GAGTTGCCTTTCCCGGGACT+TGG | + | chr2.3:14494698-14494717 | MS.gene073207:intron | 60.0% | |
| GTTGTCCAGGACCCAGAGCA+AGG | + | chr2.3:14493937-14493956 | MS.gene073207:CDS | 60.0% | |
| AATGCTGAGGACGCCGGTGC+TGG | + | chr2.3:14493772-14493791 | MS.gene073207:CDS | 65.0% | |
| ATGCTGAGGACGCCGGTGCT+GGG | + | chr2.3:14493773-14493792 | MS.gene073207:CDS | 65.0% | |
| CCAGGACCCAGAGCAAGGAC+AGG | + | chr2.3:14493942-14493961 | MS.gene073207:CDS | 65.0% | |
| ! | CCTGTCCTTGCTCTGGGTCC+TGG | - | chr2.3:14493945-14493964 | None:intergenic | 65.0% |
| ! | CGCCGGTGCTGGGTCATCAA+AGG | + | chr2.3:14493783-14493802 | MS.gene073207:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 14492786 | 14495087 | 14492786 | ID=MS.gene073207 |
| chr2.3 | mRNA | 14492786 | 14495087 | 14492786 | ID=MS.gene073207.t1;Parent=MS.gene073207 |
| chr2.3 | exon | 14492786 | 14492822 | 14492786 | ID=MS.gene073207.t1.exon1;Parent=MS.gene073207.t1 |
| chr2.3 | CDS | 14492786 | 14492822 | 14492786 | ID=cds.MS.gene073207.t1;Parent=MS.gene073207.t1 |
| chr2.3 | exon | 14493755 | 14493963 | 14493755 | ID=MS.gene073207.t1.exon2;Parent=MS.gene073207.t1 |
| chr2.3 | CDS | 14493755 | 14493963 | 14493755 | ID=cds.MS.gene073207.t1;Parent=MS.gene073207.t1 |
| chr2.3 | exon | 14494042 | 14494095 | 14494042 | ID=MS.gene073207.t1.exon3;Parent=MS.gene073207.t1 |
| chr2.3 | CDS | 14494042 | 14494095 | 14494042 | ID=cds.MS.gene073207.t1;Parent=MS.gene073207.t1 |
| chr2.3 | exon | 14495043 | 14495087 | 14495043 | ID=MS.gene073207.t1.exon4;Parent=MS.gene073207.t1 |
| chr2.3 | CDS | 14495043 | 14495087 | 14495043 | ID=cds.MS.gene073207.t1;Parent=MS.gene073207.t1 |
| Gene Sequence |
| Protein sequence |
