AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene051961

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene051961.t1 MTR_2g099670 99.789 475 1 0 1 475 1 475 0.0 979
MS.gene051961.t1 MTR_2g099670 99.275 414 3 0 62 475 10 423 0.0 850
MS.gene051961.t1 MTR_8g018310 83.229 477 75 5 1 475 1 474 0.0 808
MS.gene051961.t1 MTR_4g126010 75.681 477 91 5 1 475 1 454 0.0 706
MS.gene051961.t1 MTR_8g018310 87.863 379 44 2 1 378 1 378 0.0 699
MS.gene051961.t1 MTR_2g039930 69.787 470 138 3 1 470 1 466 0.0 677
MS.gene051961.t1 MTR_1g069720 60.842 475 156 9 1 468 1 452 0.0 554
MS.gene051961.t1 MTR_7g097160 73.639 349 90 1 1 349 1 347 0.0 550
MS.gene051961.t1 MTR_1g042280 74.432 352 80 3 1 349 2 346 0.0 547
MS.gene051961.t1 MTR_1g075870 69.474 380 109 3 1 380 2 374 0.0 536
MS.gene051961.t1 MTR_2g039930 67.352 389 123 3 82 470 1 385 0.0 535
MS.gene051961.t1 MTR_1g075870 78.135 311 65 1 1 308 2 312 0.0 525
MS.gene051961.t1 MTR_6g087070 63.007 419 139 7 1 411 1 411 0.0 516
MS.gene051961.t1 MTR_8g102930 63.706 394 132 5 1 392 1 385 1.22e-179 509
MS.gene051961.t1 MTR_1g042280 77.551 294 56 3 40 330 9 295 1.75e-170 482
MS.gene051961.t1 MTR_3g110180 66.667 342 107 2 1 342 1 335 5.47e-168 480
MS.gene051961.t1 MTR_3g110180 66.667 342 106 3 1 342 1 334 3.40e-166 476
MS.gene051961.t1 MTR_1g004990 66.972 327 107 1 1 327 1 326 2.45e-165 473
MS.gene051961.t1 MTR_0492s0030 66.172 337 108 2 1 335 1 333 1.58e-164 469
MS.gene051961.t1 MTR_0543s0020 66.172 337 108 2 1 335 1 333 1.58e-164 469
MS.gene051961.t1 MTR_1g075870 75.824 273 62 2 58 330 2 270 2.07e-154 440
MS.gene051961.t1 MTR_7g097160 67.421 221 70 1 144 364 25 243 9.75e-101 305
MS.gene051961.t1 MTR_7g006030 38.710 279 154 5 9 273 37 312 6.98e-60 207
MS.gene051961.t1 MTR_1g007150 38.462 273 157 5 9 273 124 393 3.84e-58 204
MS.gene051961.t1 MTR_3g110240 38.828 273 156 5 9 273 121 390 5.41e-58 203
MS.gene051961.t1 MTR_7g085540 38.062 289 161 6 4 277 140 425 1.47e-57 202
MS.gene051961.t1 MTR_1g116210 37.770 278 161 5 9 277 119 393 1.85e-57 201
MS.gene051961.t1 MTR_8g014050 36.879 282 156 7 9 273 128 404 3.82e-52 187
MS.gene051961.t1 MTR_7g116400 58.462 65 26 1 82 145 3 67 4.80e-18 79.3
MS.gene051961.t1 MTR_5g022030 26.957 230 151 7 2 223 92 312 5.11e-13 71.6
MS.gene051961.t1 MTR_5g022030 26.957 230 151 7 2 223 92 312 5.53e-13 71.6
MS.gene051961.t1 MTR_7g106710 27.928 222 126 10 9 215 135 337 7.92e-12 67.4
MS.gene051961.t1 MTR_5g007590 42.667 75 35 1 71 145 53 119 9.17e-12 62.8
MS.gene051961.t1 MTR_4g128820 31.447 159 98 5 1 153 2 155 9.38e-12 67.4
MS.gene051961.t1 MTR_3g466400 27.917 240 118 11 1 214 5 215 1.77e-11 66.6
MS.gene051961.t1 MTR_7g113490 24.781 343 186 13 8 324 67 363 3.01e-11 66.2
MS.gene051961.t1 MTR_5g092815 27.311 238 152 9 9 240 91 313 4.70e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene051961.t1 AT1G72710 78.038 469 98 4 1 468 1 465 0.0 738
MS.gene051961.t1 AT4G26100 71.550 471 109 5 1 471 1 446 0.0 677
MS.gene051961.t1 AT5G57015 69.538 476 102 6 1 475 1 434 0.0 664
MS.gene051961.t1 AT2G19470 82.569 327 57 0 1 327 1 327 0.0 590
MS.gene051961.t1 AT3G23340 73.371 353 83 3 1 349 1 346 0.0 545
MS.gene051961.t1 AT5G44100 81.818 297 54 0 1 297 1 297 0.0 541
MS.gene051961.t1 AT5G44100 81.818 297 54 0 1 297 1 297 0.0 541
MS.gene051961.t1 AT1G03930 81.481 297 55 0 1 297 1 297 0.0 541
MS.gene051961.t1 AT4G14340 65.625 416 120 7 1 411 7 404 0.0 539
MS.gene051961.t1 AT4G28540 60.131 459 164 6 1 449 5 454 0.0 530
MS.gene051961.t1 AT5G43320 64.455 422 119 6 1 406 1 407 0.0 530
MS.gene051961.t1 AT1G04440 70.286 350 103 1 1 349 1 350 0.0 525
MS.gene051961.t1 AT4G14340 74.775 333 75 3 1 330 7 333 0.0 525
MS.gene051961.t1 AT5G43320 73.780 328 84 1 1 328 1 326 0.0 513
MS.gene051961.t1 AT5G43320 73.780 328 84 1 1 328 1 326 0.0 513
MS.gene051961.t1 AT3G23340 72.973 333 79 3 21 349 7 332 3.65e-180 511
MS.gene051961.t1 AT4G28860 68.272 353 106 4 1 352 1 348 4.38e-178 504
MS.gene051961.t1 AT4G28880 72.611 314 86 0 1 314 1 314 4.80e-178 505
MS.gene051961.t1 AT4G28880 72.611 314 86 0 1 314 1 314 4.80e-178 505
MS.gene051961.t1 AT4G28880 72.611 314 86 0 1 314 1 314 4.80e-178 505
MS.gene051961.t1 AT4G28880 72.611 314 86 0 1 314 1 314 4.80e-178 505
MS.gene051961.t1 AT4G28860 74.351 308 79 0 1 308 1 308 1.10e-177 504
MS.gene051961.t1 AT4G08800 70.164 305 59 2 1 305 1 273 3.24e-158 450
MS.gene051961.t1 AT2G25760 39.721 287 156 5 4 273 100 386 1.42e-63 218
MS.gene051961.t1 AT2G25760 39.024 287 155 6 4 273 100 383 1.67e-60 210
MS.gene051961.t1 AT3G03940 37.716 289 162 6 4 277 133 418 3.99e-57 201
MS.gene051961.t1 AT5G18190 37.370 289 163 6 4 277 123 408 1.50e-56 199
MS.gene051961.t1 AT5G18190 37.370 289 163 6 4 277 123 408 1.50e-56 199
MS.gene051961.t1 AT3G13670 36.396 283 163 5 9 277 137 416 8.87e-56 197
MS.gene051961.t1 AT2G17890 26.667 225 148 8 7 223 106 321 4.99e-13 71.6
MS.gene051961.t1 AT3G06030 28.054 221 130 8 8 213 67 273 3.09e-12 69.3
MS.gene051961.t1 AT3G50530 26.271 236 133 10 5 219 144 359 1.08e-11 67.4
MS.gene051961.t1 AT4G36070 26.244 221 146 7 7 219 69 280 1.28e-11 67.0
MS.gene051961.t1 AT4G36070 26.244 221 146 7 7 219 69 280 1.40e-11 67.0
MS.gene051961.t1 AT5G21326 27.311 238 121 11 1 214 6 215 1.92e-11 66.2
MS.gene051961.t1 AT1G09000 27.313 227 136 8 1 213 63 274 2.23e-11 66.6
MS.gene051961.t1 AT1G09000 27.313 227 136 8 1 213 63 274 2.67e-11 66.2

Find 107 sgRNAs with CRISPR-Local

Find 301 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTGGTGCTGGGCCAAGTTC+TGG 0.217410 2.2:+3361505 MS.gene051961:CDS
TGTTCTTGTAATGGATTTAC+TGG 0.238900 2.2:+3359135 MS.gene051961:CDS
ATATTGCAGGGTTCTGGTGC+TGG 0.265600 2.2:+3361493 MS.gene051961:intron
CCTTCTCGTCATTGAAATTC+AGG 0.271965 2.2:-3362785 None:intergenic
TTCCGTCTTGGTCGCAAAAT+TGG 0.279587 2.2:+3357935 MS.gene051961:CDS
AGTGGCATATTGCAGGGTTC+TGG 0.307259 2.2:+3361487 MS.gene051961:intron
GTGAGATGGTTTGGCGTAGA+AGG 0.320994 2.2:+3359103 MS.gene051961:CDS
CCCATCAGCATATACCTTAC+AGG 0.322211 2.2:+3359564 MS.gene051961:CDS
TGTCTAGTTCTAATTTCTTC+CGG 0.335964 2.2:+3362523 MS.gene051961:CDS
AACCCTCTCTTCCTCTTGCC+AGG 0.341730 2.2:+3362616 MS.gene051961:CDS
CGCCAAACCATCTCACATTC+GGG 0.397128 2.2:-3359096 None:intergenic
AAGTTTCCATCATTTACAAT+AGG 0.399390 2.2:-3361868 None:intergenic
ATGAATACACATCTTGGAAT+TGG 0.405893 2.2:+3360643 MS.gene051961:CDS
AATCGAAGACATAATCAAAC+TGG 0.405895 2.2:-3361342 None:intergenic
CTTGCCAGGGATGGTAGTCC+TGG 0.411315 2.2:+3362630 MS.gene051961:CDS
AGATTGCTGATACTTCAAAA+TGG 0.414687 2.2:-3361368 None:intergenic
AGACAACTTCCTCATGGGTC+TGG 0.419334 2.2:+3359378 MS.gene051961:CDS
CACAAAGCAACAACATCTTC+TGG 0.430594 2.2:+3362708 MS.gene051961:CDS
TATTGCAGGGTTCTGGTGCT+GGG 0.431101 2.2:+3361494 MS.gene051961:intron
ACGCCAAACCATCTCACATT+CGG 0.433060 2.2:-3359097 None:intergenic
TTCTGTTTAGGTGGGGAAGA+TGG 0.440368 2.2:+3361793 MS.gene051961:intron
AGAGTACAATGTTCTTGTAA+TGG 0.440882 2.2:+3359126 MS.gene051961:CDS
CAGATTATGCATATCTGAAA+AGG 0.441444 2.2:+3361159 MS.gene051961:CDS
CTGAATAAATCCTCGAGACT+TGG 0.445414 2.2:-3359160 None:intergenic
TTTCTACAGCCTTCCATGGC+AGG 0.446289 2.2:+3360901 MS.gene051961:intron
GAAAGTTTCTACTTCTATTG+AGG 0.449245 2.2:+3360973 MS.gene051961:CDS
GACAACTTCCTCATGGGTCT+GGG 0.451955 2.2:+3359379 MS.gene051961:CDS
GCTAGTATGAATACACATCT+TGG 0.455950 2.2:+3360637 MS.gene051961:CDS
AAATGGATCTAAAGAAGTTA+TGG 0.456366 2.2:+3361924 MS.gene051961:CDS
TCTGGACCTATTGTAAATGA+TGG 0.460186 2.2:+3361862 MS.gene051961:CDS
AGTTTGATTATGTCTTCGAT+TGG 0.464178 2.2:+3361344 MS.gene051961:CDS
ATCCCGAATGTGAGATGGTT+TGG 0.467028 2.2:+3359094 MS.gene051961:CDS
AGAGAGAATAAGAACTTGAC+AGG 0.470574 2.2:+3360601 MS.gene051961:intron
AACAACTGCATCACGACTGT+TGG 0.471395 2.2:-3362580 None:intergenic
GATCCAATGGAACCTCGTAT+TGG 0.480777 2.2:+3357905 None:intergenic
TTGTGCTCTGATGATGTGAT+AGG 0.486532 2.2:-3362690 None:intergenic
CTCTCAGCACTCACAACAGC+TGG 0.493489 2.2:-3361535 None:intergenic
ACCTGTAAGGTATATGCTGA+TGG 0.497924 2.2:-3359565 None:intergenic
TTACCAATACGAGGTTCCAT+TGG 0.498879 2.2:-3357908 None:intergenic
ACCCTCTCTTCCTCTTGCCA+GGG 0.500811 2.2:+3362617 MS.gene051961:CDS
GTACAACAACTGAGGATGCT+TGG 0.501916 2.2:-3358923 None:intergenic
TTTAGCAAGACCGAAGTCAA+TGG 0.503927 2.2:-3359522 None:intergenic
GGAGCACTCCTTAAAACCTC+TGG 0.508111 2.2:+3362651 MS.gene051961:CDS
AGACCCATGAGGAAGTTGTC+TGG 0.513231 2.2:-3359376 None:intergenic
TCTCTTCCTCTTGCCAGGGA+TGG 0.513542 2.2:+3362621 MS.gene051961:CDS
AAAATTGGTAGCGGATCCTT+CGG 0.514691 2.2:+3357950 MS.gene051961:CDS
CCAGAGTTTCTTCTACGAGC+AGG 0.515799 2.2:-3361844 None:intergenic
AATGGCAGAAAATACCTGTA+AGG 0.515910 2.2:-3359578 None:intergenic
CCATTTGAGTCACTTGGTAC+CGG 0.517246 2.2:-3361907 None:intergenic
TTAAACCTTCACGAATGAAA+AGG 0.521136 2.2:-3361193 None:intergenic
GCTGGTGGTAAGCCAGAACT+TGG 0.528434 2.2:-3361517 None:intergenic
TTAGATCCATTTGAGTCACT+TGG 0.530625 2.2:-3361913 None:intergenic
CCGGTACCAAGTGACTCAAA+TGG 0.531968 2.2:+3361907 MS.gene051961:CDS
GTGAGTGCTGAGAGACCATC+AGG 0.536378 2.2:+3361544 MS.gene051961:CDS
AAGTTGTATAAAGTACTTCA+AGG 0.537249 2.2:+3358952 MS.gene051961:CDS
GGGGAAGATGGTAGACATGC+TGG 0.538151 2.2:+3361805 MS.gene051961:CDS
ATTGGTAACAAGTTCCGTCT+TGG 0.539261 2.2:+3357923 MS.gene051961:CDS
TAGGTGTATGCCATTGACTT+CGG 0.549001 2.2:+3359512 MS.gene051961:intron
TCTAATTTCTTCCGGCCTAG+TGG 0.549750 2.2:+3362531 MS.gene051961:CDS
CCTTAAAACTGTACTCATGC+TGG 0.552041 2.2:+3359204 MS.gene051961:CDS
CAAACCAGACAACTTCCTCA+TGG 0.552695 2.2:+3359372 MS.gene051961:CDS
TCCATTACTGTCGGTCATTG+CGG 0.553748 2.2:+3361123 MS.gene051961:CDS
TTCTACAGCCTTCCATGGCA+GGG 0.557366 2.2:+3360902 MS.gene051961:intron
TGCTCCAGGACTACCATCCC+TGG 0.557499 2.2:-3362634 None:intergenic
AGGTATATGCTGATGGGTAG+AGG 0.560253 2.2:-3359558 None:intergenic
TGAATTTCTTTGAGCACCAG+AGG 0.572897 2.2:-3362667 None:intergenic
CTTACAATGGCACGTGCAGA+AGG 0.576744 2.2:-3361403 None:intergenic
ACCGCAATGACCGACAGTAA+TGG 0.577382 2.2:-3361124 None:intergenic
AAGTACGAAGCGAATTCTGA+GGG 0.578038 2.2:-3361101 None:intergenic
ACAACTTCCTCATGGGTCTG+GGG 0.578843 2.2:+3359380 MS.gene051961:CDS
CCATGGCAGGGATTAAAAGC+AGG 0.580774 2.2:+3360914 MS.gene051961:CDS
CTTCGTACTTCCATTACTGT+CGG 0.580895 2.2:+3361114 MS.gene051961:CDS
CCTGTAAGGTATATGCTGAT+GGG 0.582308 2.2:-3359564 None:intergenic
CCTGCTCGTAGAAGAAACTC+TGG 0.583504 2.2:+3361844 MS.gene051961:CDS
GGTATTTCTACAGCCTTCCA+TGG 0.584276 2.2:+3360897 MS.gene051961:intron
AAACCAGACAACTTCCTCAT+GGG 0.585296 2.2:+3359373 MS.gene051961:CDS
GTGATTCTAAGTCGTCCCTA+CGG 0.586077 2.2:-3360769 None:intergenic
CTGGTATCCCGAATGTGAGA+TGG 0.591046 2.2:+3359089 MS.gene051961:CDS
GTCTTGTAGATCCACTAGGC+CGG 0.591531 2.2:-3362542 None:intergenic
TCCTTCGGCGAGATCTATCT+CGG 0.591939 2.2:+3357965 MS.gene051961:CDS
ATCCCTGGCAAGAGGAAGAG+AGG 0.593199 2.2:-3362619 None:intergenic
GTTCTTGTAATGGATTTACT+GGG 0.597182 2.2:+3359136 MS.gene051961:CDS
ACTCATGCTGGCTGATCAGA+TGG 0.600494 2.2:+3359216 MS.gene051961:CDS
TTTATCAGAGCAAAGCCGTA+GGG 0.600968 2.2:+3360754 MS.gene051961:intron
AATGGCACGTGCAGAAGGAG+TGG 0.609634 2.2:-3361398 None:intergenic
AAATATTCAGACAAATGAAG+AGG 0.611556 2.2:+3358093 MS.gene051961:CDS
TGAGGGGTAGCCACGACACA+AGG 0.615164 2.2:-3361084 None:intergenic
CTTGGTCGCAAAATTGGTAG+CGG 0.618071 2.2:+3357941 MS.gene051961:CDS
CCTGAATTTCAATGACGAGA+AGG 0.618175 2.2:+3362785 MS.gene051961:CDS
GGACTACCATCCCTGGCAAG+AGG 0.621909 2.2:-3362627 None:intergenic
GAAGTACGAAGCGAATTCTG+AGG 0.623073 2.2:-3361102 None:intergenic
ATTTATCAGAGCAAAGCCGT+AGG 0.626916 2.2:+3360753 MS.gene051961:intron
TCCCTGGCAAGAGGAAGAGA+GGG 0.628185 2.2:-3362618 None:intergenic
TCAGCACTCACAACAGCTGG+TGG 0.637376 2.2:-3361532 None:intergenic
CGGAACTTGTTACCAATACG+AGG 0.640695 2.2:-3357917 None:intergenic
AATTCAGGCTCTCAATACCT+CGG 0.640782 2.2:-3362770 None:intergenic
ACTTCCTCATGGGTCTGGGG+AGG 0.643093 2.2:+3359383 MS.gene051961:CDS
ACTCGTCTTGTAGATCCACT+AGG 0.645996 2.2:-3362546 None:intergenic
AGTGGATCTACAAGACGAGT+AGG 0.648511 2.2:+3362549 MS.gene051961:CDS
TTTACTGGGACCAAGTCTCG+AGG 0.649748 2.2:+3359150 MS.gene051961:CDS
AAGATGGTAGACATGCTGGT+TGG 0.660444 2.2:+3361809 MS.gene051961:CDS
ACCGAGATAGATCTCGCCGA+AGG 0.660795 2.2:-3357966 None:intergenic
AGGGACGACTTAGAATCACT+TGG 0.661964 2.2:+3360773 MS.gene051961:CDS
TTTGATTCGTACAACAACTG+AGG 0.675406 2.2:-3358931 None:intergenic
CTCGCCTCCCCAGACCCATG+AGG 0.716204 2.2:-3359387 None:intergenic
TTGTATAAAGTACTTCAAGG+CGG 0.746900 2.2:+3358955 MS.gene051961:CDS
AGTACGAAGCGAATTCTGAG+GGG 0.755113 2.2:-3361100 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAAATAATAATAATAATGA+TGG - chr2.2:3358019-3358038 None:intergenic 10.0%
!!! TGTATTTTAAAATATTGTTT+TGG + chr2.2:3361002-3361021 MS.gene051961:intron 10.0%
!!! TTAATGTTTTTTTTTTAATG+GGG + chr2.2:3361729-3361748 MS.gene051961:intron 10.0%
!!! TTTAATTAATTTGAAAATTC+AGG + chr2.2:3358067-3358086 MS.gene051961:intron 10.0%
!!! TTTTACTTTTGAAATTATTA+AGG + chr2.2:3361239-3361258 MS.gene051961:intron 10.0%
!!! TTTTTTTTGAAAAATTAATG+GGG + chr2.2:3361766-3361785 MS.gene051961:intron 10.0%
!! AAAAGTTATATATCATTCTT+TGG + chr2.2:3362247-3362266 MS.gene051961:intron 15.0%
!! AATCAATAGAAAGAAAATTA+AGG + chr2.2:3360198-3360217 MS.gene051961:intron 15.0%
!! ATATAAATAAGAAAACAAAG+AGG - chr2.2:3361220-3361239 None:intergenic 15.0%
!! ATTTACCTAAATCTTAATAT+GGG + chr2.2:3359278-3359297 MS.gene051961:intron 15.0%
!! GATTTAGGTAAATAAAAAAT+AGG - chr2.2:3359271-3359290 None:intergenic 15.0%
!! TATTTACCTAAATCTTAATA+TGG + chr2.2:3359277-3359296 MS.gene051961:intron 15.0%
!! TCACAAAAACTAAATAAAAA+TGG - chr2.2:3359599-3359618 None:intergenic 15.0%
!!! TAAAAGTATTAGCTTTAATT+CGG + chr2.2:3359780-3359799 MS.gene051961:intron 15.0%
!!! TTTTAACTATATGAAATTAG+AGG + chr2.2:3359656-3359675 MS.gene051961:intron 15.0%
!! AAGTAAACTAAGATATTGTA+AGG - chr2.2:3359011-3359030 None:intergenic 20.0%
!! AGTAAACTAAGATATTGTAA+GGG - chr2.2:3359010-3359029 None:intergenic 20.0%
!! ATATGAAATTAGAGGAAATT+AGG + chr2.2:3359664-3359683 MS.gene051961:intron 20.0%
!! CAACTAGATTTATAAAGTAT+TGG + chr2.2:3362140-3362159 MS.gene051961:intron 20.0%
!! GTAAATATAATTATACCTGA+TGG - chr2.2:3361562-3361581 None:intergenic 20.0%
!! GTAACAAGTTATATGAAAAT+TGG + chr2.2:3360004-3360023 MS.gene051961:intron 20.0%
!! TTTACCTAAATCTTAATATG+GGG + chr2.2:3359279-3359298 MS.gene051961:intron 20.0%
!!! AAAAGTATTAGCTTTAATTC+GGG + chr2.2:3359781-3359800 MS.gene051961:intron 20.0%
!!! ATATAACTTGTTACTATAGT+GGG - chr2.2:3359998-3360017 None:intergenic 20.0%
!!! ATTCCAAATCATTTTTACAT+AGG + chr2.2:3359344-3359363 MS.gene051961:CDS 20.0%
!!! ATTTATTCAGTTTTTGTAGT+CGG + chr2.2:3359173-3359192 MS.gene051961:CDS 20.0%
!!! TAATTTAAAAGCAGTTGATA+AGG - chr2.2:3360862-3360881 None:intergenic 20.0%
!!! TCATGTTATTTTTGACATTT+TGG + chr2.2:3362483-3362502 MS.gene051961:intron 20.0%
!!! TTCCAAATCATTTTTACATA+GGG + chr2.2:3359345-3359364 MS.gene051961:CDS 20.0%
!!! TTTTGTGAATTTATGTGTAA+TGG + chr2.2:3359611-3359630 MS.gene051961:intron 20.0%
! AAATATTCAGACAAATGAAG+AGG + chr2.2:3358093-3358112 MS.gene051961:CDS 25.0%
! AAATGGATCTAAAGAAGTTA+TGG + chr2.2:3361924-3361943 MS.gene051961:CDS 25.0%
! AACAAAACTACATGAATGTT+TGG - chr2.2:3358539-3358558 None:intergenic 25.0%
! AAGTTTCCATCATTTACAAT+AGG - chr2.2:3361871-3361890 None:intergenic 25.0%
! ACTAATAGTACAGTAAGAAA+TGG - chr2.2:3361705-3361724 None:intergenic 25.0%
! AGAAGAAAAGAAGCAAAAAA+GGG - chr2.2:3362115-3362134 None:intergenic 25.0%
! AGCTGCAATAAAAAAAATCA+GGG - chr2.2:3362458-3362477 None:intergenic 25.0%
! AGGAAGATAAAACAACATAA+TGG - chr2.2:3360842-3360861 None:intergenic 25.0%
! AGTGTGCAAAATTGAAATAA+AGG + chr2.2:3358584-3358603 MS.gene051961:intron 25.0%
! ATATTGTAAGGGTAGAAATT+CGG - chr2.2:3358999-3359018 None:intergenic 25.0%
! ATGGTGAGTATATTCATTTA+TGG + chr2.2:3361943-3361962 MS.gene051961:intron 25.0%
! ATTTCCCCATATTAAGATTT+AGG - chr2.2:3359286-3359305 None:intergenic 25.0%
! CAAAAATCATGAATTAACCT+CGG - chr2.2:3362401-3362420 None:intergenic 25.0%
! CAAAAGAGGTAAATTTGAAA+AGG - chr2.2:3359492-3359511 None:intergenic 25.0%
! GTTAAATTGTCTTACTTAAG+TGG + chr2.2:3361469-3361488 MS.gene051961:intron 25.0%
! TAAACAGAAAGTAATGAGAA+AGG - chr2.2:3362045-3362064 None:intergenic 25.0%
! TAGCTGCAATAAAAAAAATC+AGG - chr2.2:3362459-3362478 None:intergenic 25.0%
! TCATTAGACTTCATATTACT+CGG + chr2.2:3359030-3359049 MS.gene051961:intron 25.0%
! TGGTGAGTATATTCATTTAT+GGG + chr2.2:3361944-3361963 MS.gene051961:intron 25.0%
! TTTATGTGTATGTGTATGTT+TGG + chr2.2:3358262-3358281 MS.gene051961:intron 25.0%
!! AAGTTGTATAAAGTACTTCA+AGG + chr2.2:3358952-3358971 MS.gene051961:CDS 25.0%
!! TATGTAAAGTGATTTGTGTT+TGG + chr2.2:3358322-3358341 MS.gene051961:intron 25.0%
!! TTACTCGGATTAAATGTTTT+CGG + chr2.2:3359045-3359064 MS.gene051961:intron 25.0%
!! TTCAAATTTACCTCTTTTGT+AGG + chr2.2:3359493-3359512 MS.gene051961:intron 25.0%
!! TTTTAATGTTGTCTGTGTTT+TGG + chr2.2:3361292-3361311 MS.gene051961:intron 25.0%
!!! ATGATGGATTGAAAAATTGA+AGG - chr2.2:3358003-3358022 None:intergenic 25.0%
!!! ATTTTTGACATTTTGGTCTA+TGG + chr2.2:3362490-3362509 MS.gene051961:intron 25.0%
!!! CATATAACTTGTTACTATAG+TGG - chr2.2:3359999-3360018 None:intergenic 25.0%
!!! CGTTACTTGTTATTTTGTTT+AGG + chr2.2:3361447-3361466 MS.gene051961:intron 25.0%
!!! GAAAATCGAAAGTTTTGTTT+TGG - chr2.2:3358165-3358184 None:intergenic 25.0%
!!! GTATTTTTCAACAGAGAAAA+TGG + chr2.2:3360220-3360239 MS.gene051961:intron 25.0%
!!! TTTTGTTTGAACTTTTGTAG+AGG + chr2.2:3358638-3358657 MS.gene051961:intron 25.0%
AACAAAACTTGCATGTTTGT+TGG + chr2.2:3358203-3358222 MS.gene051961:intron 30.0%
AACCATTAGAAGAGATTTAG+AGG + chr2.2:3360306-3360325 MS.gene051961:intron 30.0%
AAGCCAAAATCAATTCTAGA+GGG - chr2.2:3358502-3358521 None:intergenic 30.0%
AATCGAAGACATAATCAAAC+TGG - chr2.2:3361345-3361364 None:intergenic 30.0%
AATCGATTAACTACCAAATG+TGG + chr2.2:3359936-3359955 MS.gene051961:intron 30.0%
AATTCAAGAGATGACAGAAA+GGG - chr2.2:3359461-3359480 None:intergenic 30.0%
ACACCTAAAATAATAGACCA+GGG - chr2.2:3361593-3361612 None:intergenic 30.0%
ACATTCATGTAAAAGTGAGT+TGG + chr2.2:3358347-3358366 MS.gene051961:intron 30.0%
AGAGGAATTGATGTATCTAA+AGG + chr2.2:3358656-3358675 MS.gene051961:intron 30.0%
AGAGTACAATGTTCTTGTAA+TGG + chr2.2:3359126-3359145 MS.gene051961:CDS 30.0%
AGATTGCTGATACTTCAAAA+TGG - chr2.2:3361371-3361390 None:intergenic 30.0%
AGTTTGATTATGTCTTCGAT+TGG + chr2.2:3361344-3361363 MS.gene051961:CDS 30.0%
ATCAACGCTGTATTTCAAAA+TGG + chr2.2:3362070-3362089 MS.gene051961:intron 30.0%
ATCCTCTAAATCTCTTCTAA+TGG - chr2.2:3360311-3360330 None:intergenic 30.0%
ATGAATACACATCTTGGAAT+TGG + chr2.2:3360643-3360662 MS.gene051961:CDS 30.0%
CAGAAGAAAAGAAGCAAAAA+AGG - chr2.2:3362116-3362135 None:intergenic 30.0%
CAGATTATGCATATCTGAAA+AGG + chr2.2:3361159-3361178 MS.gene051961:CDS 30.0%
CGACAAATTAAATTAGACAC+AGG - chr2.2:3358714-3358733 None:intergenic 30.0%
GAAAGTTTCTACTTCTATTG+AGG + chr2.2:3360973-3360992 MS.gene051961:CDS 30.0%
GATAAAACAACATAATGGCA+AGG - chr2.2:3360837-3360856 None:intergenic 30.0%
GCTTCAAGTAGAATCAATTA+TGG + chr2.2:3358423-3358442 MS.gene051961:intron 30.0%
GTCCCTATGTAAAAATGATT+TGG - chr2.2:3359350-3359369 None:intergenic 30.0%
TAACTCTTTCTCATTGCTAT+TGG + chr2.2:3358881-3358900 MS.gene051961:intron 30.0%
TAATATGTGATAGGACTTTG+CGG + chr2.2:3360344-3360363 MS.gene051961:intron 30.0%
TAATGGGGAAATTTCTGTTT+AGG + chr2.2:3361781-3361800 MS.gene051961:intron 30.0%
TAGAAAAAGGCTTAGATGTT+GGG + chr2.2:3360400-3360419 MS.gene051961:intron 30.0%
TCAAGTAGAATCAATTATGG+AGG + chr2.2:3358426-3358445 MS.gene051961:intron 30.0%
TGGATAGTCTAATAACTACA+GGG + chr2.2:3360255-3360274 MS.gene051961:intron 30.0%
TTAAACCTTCACGAATGAAA+AGG - chr2.2:3361196-3361215 None:intergenic 30.0%
TTCTTAGCTTAACAATGTGT+TGG + chr2.2:3361626-3361645 MS.gene051961:intron 30.0%
! ACTTAGTGTGTTAGTACTTT+TGG + chr2.2:3362352-3362371 MS.gene051961:intron 30.0%
! AGTTCTTATTCTCTCTGAAA+AGG - chr2.2:3360597-3360616 None:intergenic 30.0%
! CTTAGTGTGTTAGTACTTTT+GGG + chr2.2:3362353-3362372 MS.gene051961:intron 30.0%
! CTTTTCAGATATGCATAATC+TGG - chr2.2:3361161-3361180 None:intergenic 30.0%
! GAATCTCTTGTTTACATTGT+TGG + chr2.2:3359855-3359874 MS.gene051961:intron 30.0%
! TAAGGTCTTTGATAACTAGA+TGG + chr2.2:3361257-3361276 MS.gene051961:intron 30.0%
! TGAAATAAAGGTGTGCTTTA+TGG + chr2.2:3358596-3358615 MS.gene051961:intron 30.0%
! TTGTATAAAGTACTTCAAGG+CGG + chr2.2:3358955-3358974 MS.gene051961:CDS 30.0%
! TTTTCGACCTAATATGTGAT+AGG + chr2.2:3360335-3360354 MS.gene051961:intron 30.0%
!! GTTCTTATGTACTTTTTGAG+AGG + chr2.2:3360800-3360819 MS.gene051961:CDS 30.0%
!! GTTCTTGTAATGGATTTACT+GGG + chr2.2:3359136-3359155 MS.gene051961:CDS 30.0%
!! TATATTTACTTTTACGACCC+TGG + chr2.2:3361573-3361592 MS.gene051961:intron 30.0%
!! TGAATGTTTGGTTCCATTTT+AGG - chr2.2:3358527-3358546 None:intergenic 30.0%
!! TGTATGTGTATGTTTGGTTT+TGG + chr2.2:3358268-3358287 MS.gene051961:intron 30.0%
!! TGTCTAGTTCTAATTTCTTC+CGG + chr2.2:3362523-3362542 MS.gene051961:CDS 30.0%
!! TGTTCTTGTAATGGATTTAC+TGG + chr2.2:3359135-3359154 MS.gene051961:CDS 30.0%
!! TTAATTTGTCGCTTGTGTAT+TGG + chr2.2:3358723-3358742 MS.gene051961:intron 30.0%
!! TTATGTACTTTTTGAGAGGA+AGG + chr2.2:3360804-3360823 MS.gene051961:CDS 30.0%
!!! CAAACATGCAAGTTTTGTTT+TGG - chr2.2:3358202-3358221 None:intergenic 30.0%
!!! GTATGTGTATGTTTGGTTTT+GGG + chr2.2:3358269-3358288 MS.gene051961:intron 30.0%
!!! TATGTGTATGTTTGGTTTTG+GGG + chr2.2:3358270-3358289 MS.gene051961:intron 30.0%
AATGGCAGAAAATACCTGTA+AGG - chr2.2:3359581-3359600 None:intergenic 35.0%
ACAGAAAGTAATGAGAAAGG+TGG - chr2.2:3362042-3362061 None:intergenic 35.0%
ACTTGCTTCAACATTCAACT+AGG - chr2.2:3359637-3359656 None:intergenic 35.0%
AGAGAGAATAAGAACTTGAC+AGG + chr2.2:3360601-3360620 MS.gene051961:intron 35.0%
AGAGATAACTTGGTCATAAG+TGG - chr2.2:3361971-3361990 None:intergenic 35.0%
ATAGTCTAATAACTACAGGG+AGG + chr2.2:3360258-3360277 MS.gene051961:intron 35.0%
ATGTAGCAAATCTGAAGAAG+CGG - chr2.2:3362276-3362295 None:intergenic 35.0%
CAATTCAAGAGATGACAGAA+AGG - chr2.2:3359462-3359481 None:intergenic 35.0%
CACACCTAAAATAATAGACC+AGG - chr2.2:3361594-3361613 None:intergenic 35.0%
CCAGTAATCAACTTAGTTGT+GGG + chr2.2:3360543-3360562 MS.gene051961:intron 35.0%
CGGTCTTGCTAAAAAATACA+GGG + chr2.2:3359532-3359551 MS.gene051961:CDS 35.0%
GAAGCCAAAATCAATTCTAG+AGG - chr2.2:3358503-3358522 None:intergenic 35.0%
GCAAAGTCCTATCACATATT+AGG - chr2.2:3360345-3360364 None:intergenic 35.0%
GCATGACTTAACTATTCACT+GGG + chr2.2:3359745-3359764 MS.gene051961:intron 35.0%
GCTAGTATGAATACACATCT+TGG + chr2.2:3360637-3360656 MS.gene051961:CDS 35.0%
GCTTTCTACAAGAGATAACT+TGG - chr2.2:3361981-3362000 None:intergenic 35.0%
GTAGAAAAAGGCTTAGATGT+TGG + chr2.2:3360399-3360418 MS.gene051961:intron 35.0%
GTGGATAGTCTAATAACTAC+AGG + chr2.2:3360254-3360273 MS.gene051961:intron 35.0%
TACTTAAGTGGCATATTGCA+GGG + chr2.2:3361481-3361500 MS.gene051961:intron 35.0%
TCCTTTATCCTAATAAAGCG+TGG + chr2.2:3361044-3361063 MS.gene051961:intron 35.0%
TCGGTCTTGCTAAAAAATAC+AGG + chr2.2:3359531-3359550 MS.gene051961:CDS 35.0%
TCTGGACCTATTGTAAATGA+TGG + chr2.2:3361862-3361881 MS.gene051961:CDS 35.0%
TGCATGACTTAACTATTCAC+TGG + chr2.2:3359744-3359763 MS.gene051961:intron 35.0%
TTAATTCGGGTGATGACATT+AGG + chr2.2:3359794-3359813 MS.gene051961:intron 35.0%
TTACTTAAGTGGCATATTGC+AGG + chr2.2:3361480-3361499 MS.gene051961:intron 35.0%
TTAGATCCATTTGAGTCACT+TGG - chr2.2:3361916-3361935 None:intergenic 35.0%
! AACAACGACGTTGATTGTTT+AGG + chr2.2:3358833-3358852 MS.gene051961:intron 35.0%
! AGCCAAAATCAATTCTAGAG+GGG - chr2.2:3358501-3358520 None:intergenic 35.0%
! ATCCTTTTTGTCCCAATTGT+GGG + chr2.2:3360058-3360077 MS.gene051961:intron 35.0%
! GTCTTTGATAACTAGATGGT+CGG + chr2.2:3361261-3361280 MS.gene051961:intron 35.0%
! TCGGATTAAATGTTTTCGGT+TGG + chr2.2:3359049-3359068 MS.gene051961:intron 35.0%
! TCTTTGATAACTAGATGGTC+GGG + chr2.2:3361262-3361281 MS.gene051961:intron 35.0%
! TTCTCATTGCTATTGGATTC+AGG + chr2.2:3358888-3358907 MS.gene051961:intron 35.0%
! TTGTATTCTTTTGTTGCTGC+AGG + chr2.2:3361316-3361335 MS.gene051961:intron 35.0%
! TTTGATTCGTACAACAACTG+AGG - chr2.2:3358934-3358953 None:intergenic 35.0%
!! AATTTTGAGTCAACTATCCG+AGG + chr2.2:3362753-3362772 MS.gene051961:CDS 35.0%
!! ATGTATCTAAAGGTGCTGAT+AGG + chr2.2:3358666-3358685 MS.gene051961:intron 35.0%
!! ATTAGGTGGTGCTTTTTGTT+TGG + chr2.2:3359811-3359830 MS.gene051961:intron 35.0%
!! ATTGGTTCGACAACTCAAAA+GGG + chr2.2:3358741-3358760 MS.gene051961:intron 35.0%
!! CACAACTAAGTTGATTACTG+GGG - chr2.2:3360544-3360563 None:intergenic 35.0%
!! CAGCATGAGTACAGTTTTAA+GGG - chr2.2:3359206-3359225 None:intergenic 35.0%
!! CCACAACTAAGTTGATTACT+GGG - chr2.2:3360545-3360564 None:intergenic 35.0%
!! TATTGGTTCGACAACTCAAA+AGG + chr2.2:3358740-3358759 MS.gene051961:intron 35.0%
!!! GATTTTGGCTTCTCCTAAAA+TGG + chr2.2:3358511-3358530 MS.gene051961:intron 35.0%
!!! GGTCTATTATTTTAGGTGTG+TGG + chr2.2:3361594-3361613 MS.gene051961:intron 35.0%
!!! TACCCCTCTAGAATTGATTT+TGG + chr2.2:3358496-3358515 MS.gene051961:intron 35.0%
!!! TTCGGTTGGCTACTTTTATA+TGG + chr2.2:3359063-3359082 MS.gene051961:intron 35.0%
AAACCAGACAACTTCCTCAT+GGG + chr2.2:3359373-3359392 MS.gene051961:CDS 40.0%
AACGCCAACAATAGATACAG+AGG - chr2.2:3360702-3360721 None:intergenic 40.0%
AAGTACGAAGCGAATTCTGA+GGG - chr2.2:3361104-3361123 None:intergenic 40.0%
AATTCAGGCTCTCAATACCT+CGG - chr2.2:3362773-3362792 None:intergenic 40.0%
ACCTGTAAGGTATATGCTGA+TGG - chr2.2:3359568-3359587 None:intergenic 40.0%
AGAAACTAGCACCCACAATT+GGG - chr2.2:3360072-3360091 None:intergenic 40.0%
ATGGCATACACCTACAAAAG+AGG - chr2.2:3359506-3359525 None:intergenic 40.0%
ATTAACCTCGGCAAACACAT+AGG - chr2.2:3362389-3362408 None:intergenic 40.0%
ATTCTGCACATAGACACACA+TGG - chr2.2:3362171-3362190 None:intergenic 40.0%
ATTTATCAGAGCAAAGCCGT+AGG + chr2.2:3360753-3360772 MS.gene051961:intron 40.0%
CAATCTCACCTGGTAGAAAA+AGG + chr2.2:3360387-3360406 MS.gene051961:intron 40.0%
CACAAAGCAACAACATCTTC+TGG + chr2.2:3362708-3362727 MS.gene051961:CDS 40.0%
CCCAGTAATCAACTTAGTTG+TGG + chr2.2:3360542-3360561 MS.gene051961:intron 40.0%
CCTGAATTTCAATGACGAGA+AGG + chr2.2:3362785-3362804 MS.gene051961:CDS 40.0%
CCTGTAAGGTATATGCTGAT+GGG - chr2.2:3359567-3359586 None:intergenic 40.0%
CCTTAAAACTGTACTCATGC+TGG + chr2.2:3359204-3359223 MS.gene051961:CDS 40.0%
CCTTCTCGTCATTGAAATTC+AGG - chr2.2:3362788-3362807 None:intergenic 40.0%
CTCTGTTACACATCCACATT+TGG - chr2.2:3359952-3359971 None:intergenic 40.0%
CTGAATAAATCCTCGAGACT+TGG - chr2.2:3359163-3359182 None:intergenic 40.0%
CTTCGTACTTCCATTACTGT+CGG + chr2.2:3361114-3361133 MS.gene051961:CDS 40.0%
CTTGCCTCTGTATCTATTGT+TGG + chr2.2:3360695-3360714 MS.gene051961:intron 40.0%
GATGTGTAACAGAGAATTGC+TGG + chr2.2:3359958-3359977 MS.gene051961:intron 40.0%
GGAAAGAGACGAAGCAATAA+AGG - chr2.2:3359250-3359269 None:intergenic 40.0%
GGCGTTTGATTCTGAACTTT+GGG + chr2.2:3360716-3360735 MS.gene051961:intron 40.0%
GGGAAATTTCTGTTTAGGTG+GGG + chr2.2:3361786-3361805 MS.gene051961:intron 40.0%
GGGGAAATTTCTGTTTAGGT+GGG + chr2.2:3361785-3361804 MS.gene051961:intron 40.0%
GGGTAGAAATTCGGTAAGAT+AGG - chr2.2:3358990-3359009 None:intergenic 40.0%
TAGAAACTAGCACCCACAAT+TGG - chr2.2:3360073-3360092 None:intergenic 40.0%
TGAATTTCTTTGAGCACCAG+AGG - chr2.2:3362670-3362689 None:intergenic 40.0%
TGGCGTTTGATTCTGAACTT+TGG + chr2.2:3360715-3360734 MS.gene051961:intron 40.0%
TGGGGAAATTTCTGTTTAGG+TGG + chr2.2:3361784-3361803 MS.gene051961:intron 40.0%
TTTAGCAAGACCGAAGTCAA+TGG - chr2.2:3359525-3359544 None:intergenic 40.0%
TTTATCAGAGCAAAGCCGTA+GGG + chr2.2:3360754-3360773 MS.gene051961:intron 40.0%
TTTCAACAGAGAAAATGGCG+AGG + chr2.2:3360225-3360244 MS.gene051961:intron 40.0%
! AAAGCAAGCCACGCTTTATT+AGG - chr2.2:3361055-3361074 None:intergenic 40.0%
! ATTGGTAACAAGTTCCGTCT+TGG + chr2.2:3357923-3357942 MS.gene051961:CDS 40.0%
! CATCTAAGCCTTTTTCTACC+AGG - chr2.2:3360398-3360417 None:intergenic 40.0%
! CCAGCATGAGTACAGTTTTA+AGG - chr2.2:3359207-3359226 None:intergenic 40.0%
! CGACCCTGGTCTATTATTTT+AGG + chr2.2:3361587-3361606 MS.gene051961:intron 40.0%
! CTTTTTCTACCAGGTGAGAT+TGG - chr2.2:3360389-3360408 None:intergenic 40.0%
! GATCCTTTTTGTCCCAATTG+TGG + chr2.2:3360057-3360076 MS.gene051961:intron 40.0%
! GCCACGCTTTATTAGGATAA+AGG - chr2.2:3361048-3361067 None:intergenic 40.0%
! TACCAATTTTGCGACCAAGA+CGG - chr2.2:3357940-3357959 None:intergenic 40.0%
! TTGCGGTGTCAATTGATTCA+TGG + chr2.2:3360361-3360380 MS.gene051961:intron 40.0%
! TTGGTTCGACAACTCAAAAG+GGG + chr2.2:3358742-3358761 MS.gene051961:intron 40.0%
! TTGTGCTCTGATGATGTGAT+AGG - chr2.2:3362693-3362712 None:intergenic 40.0%
! TTTGAGCACCAGAGGTTTTA+AGG - chr2.2:3362662-3362681 None:intergenic 40.0%
! TTTTGTTAGTCCTTGTGTCG+TGG + chr2.2:3361074-3361093 MS.gene051961:intron 40.0%
!! AAAATTGGTAGCGGATCCTT+CGG + chr2.2:3357950-3357969 MS.gene051961:CDS 40.0%
!! CCCACAACTAAGTTGATTAC+TGG - chr2.2:3360546-3360565 None:intergenic 40.0%
!! TAGGTGTATGCCATTGACTT+CGG + chr2.2:3359512-3359531 MS.gene051961:intron 40.0%
AACAACTGCATCACGACTGT+TGG - chr2.2:3362583-3362602 None:intergenic 45.0%
AAGATGGTAGACATGCTGGT+TGG + chr2.2:3361809-3361828 MS.gene051961:CDS 45.0%
ACGCCAAACCATCTCACATT+CGG - chr2.2:3359100-3359119 None:intergenic 45.0%
ACTCGTCTTGTAGATCCACT+AGG - chr2.2:3362549-3362568 None:intergenic 45.0%
AGAGAAAATGGCGAGGTCTT+AGG + chr2.2:3360232-3360251 MS.gene051961:intron 45.0%
AGATACAGAGGCAAGTGAGT+TGG - chr2.2:3360690-3360709 None:intergenic 45.0%
AGGGACGACTTAGAATCACT+TGG + chr2.2:3360773-3360792 MS.gene051961:CDS 45.0%
AGTACGAAGCGAATTCTGAG+GGG - chr2.2:3361103-3361122 None:intergenic 45.0%
AGTGGATCTACAAGACGAGT+AGG + chr2.2:3362549-3362568 MS.gene051961:CDS 45.0%
ATCCCGAATGTGAGATGGTT+TGG + chr2.2:3359094-3359113 MS.gene051961:CDS 45.0%
ATTCGGGTGATGACATTAGG+TGG + chr2.2:3359797-3359816 MS.gene051961:intron 45.0%
CAAACCAGACAACTTCCTCA+TGG + chr2.2:3359372-3359391 MS.gene051961:CDS 45.0%
CACCCACAATTGGGACAAAA+AGG - chr2.2:3360063-3360082 None:intergenic 45.0%
CCCATCAGCATATACCTTAC+AGG + chr2.2:3359564-3359583 MS.gene051961:CDS 45.0%
CTGATAGGTGTGTGTGACTA+AGG + chr2.2:3358681-3358700 MS.gene051961:intron 45.0%
CTTGGTCGCAAAATTGGTAG+CGG + chr2.2:3357941-3357960 MS.gene051961:CDS 45.0%
GAAGTACGAAGCGAATTCTG+AGG - chr2.2:3361105-3361124 None:intergenic 45.0%
GGGAGGTGAAAGAAAACTGT+AGG + chr2.2:3360275-3360294 MS.gene051961:intron 45.0%
GGTGTGCTTTATGGAATGTG+TGG + chr2.2:3358605-3358624 MS.gene051961:intron 45.0%
GTACAACAACTGAGGATGCT+TGG - chr2.2:3358926-3358945 None:intergenic 45.0%
GTGATTCTAAGTCGTCCCTA+CGG - chr2.2:3360772-3360791 None:intergenic 45.0%
GTGCTTTATGGAATGTGTGG+TGG + chr2.2:3358608-3358627 MS.gene051961:intron 45.0%
TATGTCCTATGTGTTTGCCG+AGG + chr2.2:3362381-3362400 MS.gene051961:intron 45.0%
TCCATTACTGTCGGTCATTG+CGG + chr2.2:3361123-3361142 MS.gene051961:CDS 45.0%
TCTAATTTCTTCCGGCCTAG+TGG + chr2.2:3362531-3362550 MS.gene051961:CDS 45.0%
TTCCGTCTTGGTCGCAAAAT+TGG + chr2.2:3357935-3357954 MS.gene051961:CDS 45.0%
TTCTGTTTAGGTGGGGAAGA+TGG + chr2.2:3361793-3361812 MS.gene051961:intron 45.0%
! AGGTATATGCTGATGGGTAG+AGG - chr2.2:3359561-3359580 None:intergenic 45.0%
! CTTTTAATCCCTGCCATGGA+AGG - chr2.2:3360913-3360932 None:intergenic 45.0%
! GGTATTTCTACAGCCTTCCA+TGG + chr2.2:3360897-3360916 MS.gene051961:intron 45.0%
!! AGGGTATTGTGACAACAAGC+AGG - chr2.2:3362439-3362458 None:intergenic 45.0%
!! CGGAACTTGTTACCAATACG+AGG - chr2.2:3357920-3357939 None:intergenic 45.0%
!! GACAACTCAAAAGGGGTGTT+TGG + chr2.2:3358749-3358768 MS.gene051961:intron 45.0%
!!! GGCTACTTTTATATGGCAGC+TGG + chr2.2:3359070-3359089 MS.gene051961:intron 45.0%
!! AAATTAATTATTTATTTACT+TGG + chr2.2:3360876-3360895 MS.gene051961:intron 5.0%
!!! TTTAATGTTTTTTTTTTAAT+GGG + chr2.2:3361728-3361747 MS.gene051961:intron 5.0%
!!! TTTTAATGTTTTTTTTTTAA+TGG + chr2.2:3361727-3361746 MS.gene051961:intron 5.0%
!!! TTTTTTTTTGAAAAATTAAT+GGG + chr2.2:3361765-3361784 MS.gene051961:intron 5.0%
!!! TTTTTTTTTTGAAAAATTAA+TGG + chr2.2:3361764-3361783 MS.gene051961:intron 5.0%
ACAACTTCCTCATGGGTCTG+GGG + chr2.2:3359380-3359399 MS.gene051961:CDS 50.0%
ACCGCAATGACCGACAGTAA+TGG - chr2.2:3361127-3361146 None:intergenic 50.0%
AGACAACTTCCTCATGGGTC+TGG + chr2.2:3359378-3359397 MS.gene051961:CDS 50.0%
AGACCCATGAGGAAGTTGTC+TGG - chr2.2:3359379-3359398 None:intergenic 50.0%
AGTGGCATATTGCAGGGTTC+TGG + chr2.2:3361487-3361506 MS.gene051961:intron 50.0%
CCAGAGTTTCTTCTACGAGC+AGG - chr2.2:3361847-3361866 None:intergenic 50.0%
CCATGGCAGGGATTAAAAGC+AGG + chr2.2:3360914-3360933 MS.gene051961:CDS 50.0%
CCTGCTCGTAGAAGAAACTC+TGG + chr2.2:3361844-3361863 MS.gene051961:CDS 50.0%
CGCCAAACCATCTCACATTC+GGG - chr2.2:3359099-3359118 None:intergenic 50.0%
CTGGTATCCCGAATGTGAGA+TGG + chr2.2:3359089-3359108 MS.gene051961:CDS 50.0%
CTTACAATGGCACGTGCAGA+AGG - chr2.2:3361406-3361425 None:intergenic 50.0%
GAAAATGGCGAGGTCTTAGG+TGG + chr2.2:3360235-3360254 MS.gene051961:intron 50.0%
GACAACTTCCTCATGGGTCT+GGG + chr2.2:3359379-3359398 MS.gene051961:CDS 50.0%
GTCTTGTAGATCCACTAGGC+CGG - chr2.2:3362545-3362564 None:intergenic 50.0%
TAGCACACCGCCACTTACAA+TGG - chr2.2:3361419-3361438 None:intergenic 50.0%
TCCTTCGGCGAGATCTATCT+CGG + chr2.2:3357965-3357984 MS.gene051961:CDS 50.0%
TTCATGGAGCCAATCTCACC+TGG + chr2.2:3360377-3360396 MS.gene051961:intron 50.0%
TTCTACAGCCTTCCATGGCA+GGG + chr2.2:3360902-3360921 MS.gene051961:intron 50.0%
TTTACTGGGACCAAGTCTCG+AGG + chr2.2:3359150-3359169 MS.gene051961:CDS 50.0%
TTTCTACAGCCTTCCATGGC+AGG + chr2.2:3360901-3360920 MS.gene051961:intron 50.0%
! ACTCATGCTGGCTGATCAGA+TGG + chr2.2:3359216-3359235 MS.gene051961:CDS 50.0%
! ATATTGCAGGGTTCTGGTGC+TGG + chr2.2:3361493-3361512 MS.gene051961:intron 50.0%
! ATGCTGGCTGATCAGATGGT+AGG + chr2.2:3359220-3359239 MS.gene051961:intron 50.0%
! CGCGACCTTTTCATTCGTGA+AGG + chr2.2:3361188-3361207 MS.gene051961:CDS 50.0%
! GGAGCACTCCTTAAAACCTC+TGG + chr2.2:3362651-3362670 MS.gene051961:CDS 50.0%
! GTGAGATGGTTTGGCGTAGA+AGG + chr2.2:3359103-3359122 MS.gene051961:CDS 50.0%
! TATTGCAGGGTTCTGGTGCT+GGG + chr2.2:3361494-3361513 MS.gene051961:intron 50.0%
! TCTGCACGTGCCATTGTAAG+TGG + chr2.2:3361406-3361425 MS.gene051961:intron 50.0%
!! CCTGCTTTTAATCCCTGCCA+TGG - chr2.2:3360917-3360936 None:intergenic 50.0%
!!! GAGGTTTTAAGGAGTGCTCC+AGG - chr2.2:3362651-3362670 None:intergenic 50.0%
AACCCTCTCTTCCTCTTGCC+AGG + chr2.2:3362616-3362635 MS.gene051961:CDS 55.0%
AATGGCACGTGCAGAAGGAG+TGG - chr2.2:3361401-3361420 None:intergenic 55.0%
ACCCTCTCTTCCTCTTGCCA+GGG + chr2.2:3362617-3362636 MS.gene051961:CDS 55.0%
ACCGAGATAGATCTCGCCGA+AGG - chr2.2:3357969-3357988 None:intergenic 55.0%
ATCCCTGGCAAGAGGAAGAG+AGG - chr2.2:3362622-3362641 None:intergenic 55.0%
CTCTCAGCACTCACAACAGC+TGG - chr2.2:3361538-3361557 None:intergenic 55.0%
GCTGGTGGTAAGCCAGAACT+TGG - chr2.2:3361520-3361539 None:intergenic 55.0%
GGGGAAGATGGTAGACATGC+TGG + chr2.2:3361805-3361824 MS.gene051961:CDS 55.0%
GTAAGTGGCGGTGTGCTATC+TGG + chr2.2:3361421-3361440 MS.gene051961:intron 55.0%
TCAGCACTCACAACAGCTGG+TGG - chr2.2:3361535-3361554 None:intergenic 55.0%
TCCCTGGCAAGAGGAAGAGA+GGG - chr2.2:3362621-3362640 None:intergenic 55.0%
TCTCTTCCTCTTGCCAGGGA+TGG + chr2.2:3362621-3362640 MS.gene051961:CDS 55.0%
! GCACGTGCCATTGTAAGTGG+CGG + chr2.2:3361409-3361428 MS.gene051961:intron 55.0%
!! GTGAGTGCTGAGAGACCATC+AGG + chr2.2:3361544-3361563 MS.gene051961:CDS 55.0%
ACTTCCTCATGGGTCTGGGG+AGG + chr2.2:3359383-3359402 MS.gene051961:CDS 60.0%
CTTGCCAGGGATGGTAGTCC+TGG + chr2.2:3362630-3362649 MS.gene051961:CDS 60.0%
GGACTACCATCCCTGGCAAG+AGG - chr2.2:3362630-3362649 None:intergenic 60.0%
TGAGGGGTAGCCACGACACA+AGG - chr2.2:3361087-3361106 None:intergenic 60.0%
TGCTCCAGGACTACCATCCC+TGG - chr2.2:3362637-3362656 None:intergenic 60.0%
! TCTGGTGCTGGGCCAAGTTC+TGG + chr2.2:3361505-3361524 MS.gene051961:CDS 60.0%
CTCGCCTCCCCAGACCCATG+AGG - chr2.2:3359390-3359409 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 3357911 3362818 3357911 ID=MS.gene051961
chr2.2 mRNA 3357911 3362818 3357911 ID=MS.gene051961.t1;Parent=MS.gene051961
chr2.2 exon 3357911 3357986 3357911 ID=MS.gene051961.t1.exon1;Parent=MS.gene051961.t1
chr2.2 CDS 3357911 3357986 3357911 ID=cds.MS.gene051961.t1;Parent=MS.gene051961.t1
chr2.2 exon 3358089 3358129 3358089 ID=MS.gene051961.t1.exon2;Parent=MS.gene051961.t1
chr2.2 CDS 3358089 3358129 3358089 ID=cds.MS.gene051961.t1;Parent=MS.gene051961.t1
chr2.2 exon 3358910 3358979 3358910 ID=MS.gene051961.t1.exon3;Parent=MS.gene051961.t1
chr2.2 CDS 3358910 3358979 3358910 ID=cds.MS.gene051961.t1;Parent=MS.gene051961.t1
chr2.2 exon 3359089 3359237 3359089 ID=MS.gene051961.t1.exon4;Parent=MS.gene051961.t1
chr2.2 CDS 3359089 3359237 3359089 ID=cds.MS.gene051961.t1;Parent=MS.gene051961.t1
chr2.2 exon 3359322 3359417 3359322 ID=MS.gene051961.t1.exon5;Parent=MS.gene051961.t1
chr2.2 CDS 3359322 3359417 3359322 ID=cds.MS.gene051961.t1;Parent=MS.gene051961.t1
chr2.2 exon 3359515 3359585 3359515 ID=MS.gene051961.t1.exon6;Parent=MS.gene051961.t1
chr2.2 CDS 3359515 3359585 3359515 ID=cds.MS.gene051961.t1;Parent=MS.gene051961.t1
chr2.2 exon 3360603 3360664 3360603 ID=MS.gene051961.t1.exon7;Parent=MS.gene051961.t1
chr2.2 CDS 3360603 3360664 3360603 ID=cds.MS.gene051961.t1;Parent=MS.gene051961.t1
chr2.2 exon 3360762 3360825 3360762 ID=MS.gene051961.t1.exon8;Parent=MS.gene051961.t1
chr2.2 CDS 3360762 3360825 3360762 ID=cds.MS.gene051961.t1;Parent=MS.gene051961.t1
chr2.2 exon 3360910 3360994 3360910 ID=MS.gene051961.t1.exon9;Parent=MS.gene051961.t1
chr2.2 CDS 3360910 3360994 3360910 ID=cds.MS.gene051961.t1;Parent=MS.gene051961.t1
chr2.2 exon 3361083 3361209 3361083 ID=MS.gene051961.t1.exon10;Parent=MS.gene051961.t1
chr2.2 CDS 3361083 3361209 3361083 ID=cds.MS.gene051961.t1;Parent=MS.gene051961.t1
chr2.2 exon 3361338 3361420 3361338 ID=MS.gene051961.t1.exon11;Parent=MS.gene051961.t1
chr2.2 CDS 3361338 3361420 3361338 ID=cds.MS.gene051961.t1;Parent=MS.gene051961.t1
chr2.2 exon 3361502 3361565 3361502 ID=MS.gene051961.t1.exon12;Parent=MS.gene051961.t1
chr2.2 CDS 3361502 3361565 3361502 ID=cds.MS.gene051961.t1;Parent=MS.gene051961.t1
chr2.2 exon 3361803 3361945 3361803 ID=MS.gene051961.t1.exon13;Parent=MS.gene051961.t1
chr2.2 CDS 3361803 3361945 3361803 ID=cds.MS.gene051961.t1;Parent=MS.gene051961.t1
chr2.2 exon 3362522 3362818 3362522 ID=MS.gene051961.t1.exon14;Parent=MS.gene051961.t1
chr2.2 CDS 3362522 3362818 3362522 ID=cds.MS.gene051961.t1;Parent=MS.gene051961.t1
Gene Sequence

>MS.gene051961

ATGGAACCTCGTATTGGTAACAAGTTCCGTCTTGGTCGCAAAATTGGTAGCGGATCCTTCGGCGAGATCTATCTCGGTATCATCATTTTCCTTCAATTTTTCAATCCATCATTATTATTATTATTTTCAATTATTATTATTATCACTAACTTTAAATTTAATTAATTTGAAAATTCAGGTACAAATATTCAGACAAATGAAGAGGTTGCAATTAAGCTTGTGAGTAACTTTCGATGTTTTTATGTTTAATTCCAAAACAAAACTTTCGATTTTCTTTTATGTTTAATTCCAAAACAAAACTTGCATGTTTGTTGGTCAAAGTTATTGATTCTAGCTCGTAAAGTTGTGATTTTTATGTGTATGTGTATGTTTGGTTTTGGGGTGACAATAATTGATTTCGAGTAAATTGATTATGTAAAGTGATTTGTGTTTGGATACATTCATGTAAAAGTGAGTTGGACAGTAAATTTGAGTGTGAAAATCAATTATTGAATCAAAAGCTACAAATCTTAGCTTCAAGTAGAATCAATTATGGAGGAAAATTCAGTTCTATTTGAAAGCAACAAAACATGTCAAAATCAATTCTACCCCTCTAGAATTGATTTTGGCTTCTCCTAAAATGGAACCAAACATTCATGTAGTTTTGTTTATTGTTCAATTTTAATGAGTTATGAGTGTGCAAAATTGAAATAAAGGTGTGCTTTATGGAATGTGTGGTGGAATGTTTTTTTGTTTGAACTTTTGTAGAGGAATTGATGTATCTAAAGGTGCTGATAGGTGTGTGTGACTAAGGTTGTTTGCCTGTGTCTAATTTAATTTGTCGCTTGTGTATTGGTTCGACAACTCAAAAGGGGTGTTTGGCTGTATACTCATTGTCGTTTATCTGCTGTTTTTAATGACATTAATGATAATTAACTTATTGAACAACGACGTTGATTGTTTAGGATTATAGATGTGTTTAATTGATGTTTAACTCTTTCTCATTGCTATTGGATTCAGGAAAATATAAAAACCAAGCATCCTCAGTTGTTGTACGAATCAAAGTTGTATAAAGTACTTCAAGGCGGAAGTAATTTCCTATCTTACCGAATTTCTACCCTTACAATATCTTAGTTTACTTCATTAGACTTCATATTACTCGGATTAAATGTTTTCGGTTGGCTACTTTTATATGGCAGCTGGTATCCCGAATGTGAGATGGTTTGGCGTAGAAGGAGAGTACAATGTTCTTGTAATGGATTTACTGGGACCAAGTCTCGAGGATTTATTCAGTTTTTGTAGTCGGAAATTGTCCCTTAAAACTGTACTCATGCTGGCTGATCAGATGGTAGGATTTCCTTTATTGCTTCGTCTCTTTCCTATTTTTTATTTACCTAAATCTTAATATGGGGAAATCTCTAACTGTTTGCAGATAAATCGAGTTGAATATATTCATTCCAAATCATTTTTACATAGGGACATCAAACCAGACAACTTCCTCATGGGTCTGGGGAGGCGAGCTAATCAAGTATTAGTTAAATTCTCGCTTTTTCATTTAATTTTCTTATCCCTTTCTGTCATCTCTTGAATTGAATATATCCTTTTCAAATTTACCTCTTTTGTAGGTGTATGCCATTGACTTCGGTCTTGCTAAAAAATACAGGGACACCTCTACCCATCAGCATATACCTTACAGGTATTTTCTGCCATTTTTATTTAGTTTTTGTGAATTTATGTGTAATGGCCTAGTTGAATGTTGAAGCAAGTTTTAACTATATGAAATTAGAGGAAATTAGGACAACTATAATTTGATAATGACAAATGCATTATCTGAAACTTGAAAGTATTGTTTGTTGCATGACTTAACTATTCACTGGGAGTCGTTTATAATAAAAGTATTAGCTTTAATTCGGGTGATGACATTAGGTGGTGCTTTTTGTTTGGTTTTGTGTTTCATGCAGAGATGAATCTCTTGTTTACATTGTTGGAAGATTAAAAAATAATCTATTTCTCTCTAGAGCTTTGATGTTTAGAATACTATTGATAAATCGATTAACTACCAAATGTGGATGTGTAACAGAGAATTGCTGGAAGAATTTAATTTACCCACTATAGTAACAAGTTATATGAAAATTGGTAGTTCTGCACAGACAATCAATCAAGTCTAGATCCTTTTTGTCCCAATTGTGGGTGCTAGTTTCTATTTTTGTATTTATGAAAACATGTTTCTATACTTCGTGCATAACTAGCTGTTGTTAATTGTACAATAAGTAAAATCTCTTTAAGTAACTTCTTTAAAGATTGTTATAATCAATAGAAAGAAAATTAAGGTATTTTTCAACAGAGAAAATGGCGAGGTCTTAGGTGGATAGTCTAATAACTACAGGGAGGTGAAAGAAAACTGTAGGACAAGACAAACCATTAGAAGAGATTTAGAGGATATTATTTTCGACCTAATATGTGATAGGACTTTGCGGTGTCAATTGATTCATGGAGCCAATCTCACCTGGTAGAAAAAGGCTTAGATGTTGGGTTGATTGTGCTATTCATCTTTATTTATTTTAGTTTACTTTATTCGCTATTTTATCGAAAAACTTTATAATAAGTTTCTATTTATTGATTAAAATAGTACTTGCTTATTGTATTGTAGTCCCCAGTAATCAACTTAGTTGTGGGTTTTCGCTGAATTTTACTTGCTTATAATCCTTTTCAGAGAGAATAAGAACTTGACAGGAACTGCTAGATATGCTAGTATGAATACACATCTTGGAATTGGTACGTTCACACATCTCTTCTTCCAACTCACTTGCCTCTGTATCTATTGTTGGCGTTTGATTCTGAACTTTGGGAATGTTTGATCATTATTTATCAGAGCAAAGCCGTAGGGACGACTTAGAATCACTTGGATATGTTCTTATGTACTTTTTGAGAGGAAGGTATTTATCCTTGCCATTATGTTGTTTTATCTTCCTTATCAACTGCTTTTAAATTAATTATTTATTTACTTGGTATTTCTACAGCCTTCCATGGCAGGGATTAAAAGCAGGTACTAAAAAGCAGAAGTACGAGAAAATCAGTGAGAAGAAAGTTTCTACTTCTATTGAGGTACAACTGTATTTTAAAATATTGTTTTGGTACATACTATGTTTCAAACTCCTTTATCCTAATAAAGCGTGGCTTGCTTTTTTGTTAGTCCTTGTGTCGTGGCTACCCCTCAGAATTCGCTTCGTACTTCCATTACTGTCGGTCATTGCGGTTTGATGATAAACCAGATTATGCATATCTGAAAAGGCTGTTTCGCGACCTTTTCATTCGTGAAGGTTTAAGCCTCTTTGTTTTCTTATTTATATTTTACTTTTGAAATTATTAAGGTCTTTGATAACTAGATGGTCGGGTTTTGAATTTTAATGTTGTCTGTGTTTTGGCTTGTATTCTTTTGTTGCTGCAGGATTCCAGTTTGATTATGTCTTCGATTGGACCATTTTGAAGTATCAGCAATCTCAAATTGCCACTCCTTCTGCACGTGCCATTGTAAGTGGCGGTGTGCTATCTGGTAACGTTACTTGTTATTTTGTTTAGGTTAAATTGTCTTACTTAAGTGGCATATTGCAGGGTTCTGGTGCTGGGCCAAGTTCTGGCTTACCACCAGCTGTTGTGAGTGCTGAGAGACCATCAGGTATAATTATATTTACTTTTACGACCCTGGTCTATTATTTTAGGTGTGTGGCTTCATACTTTCTTAGCTTAACAATGTGTTGGACATTCTTTGTATATTTCTTGTTCTTCTATGTTTTTCATTTATCACAGTTTTTCCATTTCTTACTGTACTATTAGTATTTTTAATGTTTTTTTTTTAATGGGGAAATTTCTTTTTTTTTTTTTTTGAAAAATTAATGGGGAAATTTCTGTTTAGGTGGGGAAGATGGTAGACATGCTGGTTGGTCTTCATCAGATCCTGCTCGTAGAAGAAACTCTGGACCTATTGTAAATGATGGAAACTTGTCTAGACAAAAAGCACCGGTACCAAGTGACTCAAATGGATCTAAAGAAGTTATGGTGAGTATATTCATTTATGGGACCACTTATGACCAAGTTATCTCTTGTAGAAAGCTACATGATGATGTTTTTTTTTTAACTATATTAAGCATACCACCTTTCTCATTACTTTCTGTTTAAGAAAATCAACGCTGTATTTCAAAATGGAAAAGAAATTATGAAGCTTCCCTTTTTTGCTTCTTTTCTTCTGTTCACAACTAGATTTATAAAGTATTGGCTGTTCCATGTGTGTCTATGTGCAGAATTGAAGCATGAGCTAAGCAATTAACGCAAATATTTTTCAGAAGTCAGCTTTGTTTAGAAAAGTTATATATCATTCTTTGGACTCCGCTTCTTCAGATTTGCTACATCTAAGAGTTTTGTTCTGTGAATATACTTTGTAGTTTTTGCTTTTCAGCTGAAAGAAACTTAGTGTGTTAGTACTTTTGGGTTAGTTATGTCCTATGTGTTTGCCGAGGTTAATTCATGATTTTTGTCATGTATGACATAGCCTGCTTGTTGTCACAATACCCTGATTTTTTTTATTGCAGCTAGTTTTCATGTTATTTTTGACATTTTGGTCTATGGTTTATGCAGTTGTCTAGTTCTAATTTCTTCCGGCCTAGTGGATCTACAAGACGAGTAGGTGCTGTTTCCAACAGTCGTGATGCAGTTGTTAGCAGTGAAATTGAACCCTCTCTTCCTCTTGCCAGGGATGGTAGTCCTGGAGCACTCCTTAAAACCTCTGGTGCTCAAAGAAATTCACCTATCACATCATCAGAGCACAAAGCAACAACATCTTCTGGCAGAAACACATCAAACATGAAGAATTTTGAGTCAACTATCCGAGGTATTGAGAGCCTGAATTTCAATGACGAGAAGGTACAGTATTAG
Protein sequence

>MS.gene051961.t1

MEPRIGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENIKTKHPQLLYESKLYKVLQGGTGIPNVRWFGVEGEYNVLVMDLLGPSLEDLFSFCSRKLSLKTVLMLADQMINRVEYIHSKSFLHRDIKPDNFLMGLGRRANQVYAIDFGLAKKYRDTSTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVSTSIESLCRGYPSEFASYFHYCRSLRFDDKPDYAYLKRLFRDLFIREGFQFDYVFDWTILKYQQSQIATPSARAIGSGAGPSSGLPPAVVSAERPSGGEDGRHAGWSSSDPARRRNSGPIVNDGNLSRQKAPVPSDSNGSKEVMLSSSNFFRPSGSTRRVGAVSNSRDAVVSSEIEPSLPLARDGSPGALLKTSGAQRNSPITSSEHKATTSSGRNTSNMKNFESTIRGIESLNFNDEKVQY