Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene57575.t1 | XP_013458470.1 | 98.7 | 454 | 6 | 0 | 1 | 454 | 1 | 454 | 1.70E-253 | 884.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene57575.t1 | P42158 | 73.7 | 471 | 85 | 6 | 1 | 453 | 1 | 450 | 3.5e-191 | 669.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene57575.t1 | A0A072UT31 | 98.7 | 454 | 6 | 0 | 1 | 454 | 1 | 454 | 1.2e-253 | 884.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene051853 | MS.gene57575 | 0.997092 | 9.16E-237 | -1.69E-46 |
MS.gene052609 | MS.gene57575 | 0.807416 | 5.11E-50 | -1.69E-46 |
MS.gene055313 | MS.gene57575 | 0.800551 | 1.37E-48 | -1.69E-46 |
MS.gene055864 | MS.gene57575 | 0.811629 | 6.36E-51 | -1.69E-46 |
MS.gene058758 | MS.gene57575 | 0.802386 | 5.75E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene57575 | MS.gene012266 | PPI |
MS.gene57575 | MS.gene02469 | PPI |
MS.gene57575 | MS.gene038078 | PPI |
MS.gene57575 | MS.gene85233 | PPI |
MS.gene57575 | MS.gene89575 | PPI |
MS.gene57575 | MS.gene37374 | PPI |
MS.gene051961 | MS.gene57575 | PPI |
MS.gene57575 | MS.gene008767 | PPI |
MS.gene57575 | MS.gene04733 | PPI |
MS.gene47479 | MS.gene57575 | PPI |
MS.gene57575 | MS.gene057000 | PPI |
MS.gene57575 | MS.gene051853 | PPI |
MS.gene57575 | MS.gene07819 | PPI |
MS.gene012266 | MS.gene57575 | PPI |
MS.gene57575 | MS.gene059592 | PPI |
MS.gene57575 | MS.gene015777 | PPI |
MS.gene57575 | MS.gene049095 | PPI |
MS.gene57575 | MS.gene052689 | PPI |
MS.gene57575 | MS.gene05889 | PPI |
MS.gene57575 | MS.gene26532 | PPI |
MS.gene57575 | MS.gene21700 | PPI |
MS.gene57575 | MS.gene061465 | PPI |
MS.gene57575 | MS.gene23970 | PPI |
MS.gene57575 | MS.gene011236 | PPI |
MS.gene57575 | MS.gene036055 | PPI |
MS.gene57575 | MS.gene025139 | PPI |
MS.gene57575 | MS.gene39623 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene57575.t1 | MTR_4g126010 | 98.678 | 454 | 6 | 0 | 1 | 454 | 1 | 454 | 0.0 | 929 |
MS.gene57575.t1 | MTR_2g099670 | 76.778 | 478 | 84 | 7 | 1 | 454 | 1 | 475 | 0.0 | 728 |
MS.gene57575.t1 | MTR_2g039930 | 76.170 | 470 | 86 | 5 | 1 | 448 | 1 | 466 | 0.0 | 722 |
MS.gene57575.t1 | MTR_8g018310 | 74.895 | 478 | 92 | 7 | 1 | 454 | 1 | 474 | 0.0 | 705 |
MS.gene57575.t1 | MTR_8g018310 | 86.517 | 356 | 45 | 2 | 1 | 354 | 1 | 355 | 0.0 | 648 |
MS.gene57575.t1 | MTR_2g099670 | 73.861 | 417 | 82 | 7 | 62 | 454 | 10 | 423 | 0.0 | 602 |
MS.gene57575.t1 | MTR_2g039930 | 74.036 | 389 | 75 | 5 | 82 | 448 | 1 | 385 | 0.0 | 575 |
MS.gene57575.t1 | MTR_1g042280 | 75.811 | 339 | 76 | 3 | 1 | 333 | 2 | 340 | 0.0 | 547 |
MS.gene57575.t1 | MTR_1g069720 | 71.667 | 360 | 89 | 4 | 1 | 360 | 1 | 347 | 0.0 | 546 |
MS.gene57575.t1 | MTR_7g097160 | 81.481 | 297 | 55 | 0 | 1 | 297 | 1 | 297 | 0.0 | 541 |
MS.gene57575.t1 | MTR_1g075870 | 73.591 | 337 | 83 | 3 | 1 | 331 | 2 | 338 | 0.0 | 531 |
MS.gene57575.t1 | MTR_1g075870 | 74.924 | 327 | 78 | 2 | 1 | 323 | 2 | 328 | 0.0 | 530 |
MS.gene57575.t1 | MTR_6g087070 | 63.070 | 417 | 147 | 4 | 1 | 416 | 1 | 411 | 0.0 | 525 |
MS.gene57575.t1 | MTR_8g102930 | 68.421 | 361 | 112 | 2 | 1 | 360 | 1 | 360 | 0.0 | 514 |
MS.gene57575.t1 | MTR_3g110180 | 56.081 | 444 | 170 | 7 | 1 | 439 | 1 | 424 | 4.59e-171 | 487 |
MS.gene57575.t1 | MTR_1g042280 | 84.109 | 258 | 41 | 0 | 40 | 297 | 9 | 266 | 4.11e-170 | 480 |
MS.gene57575.t1 | MTR_3g110180 | 56.081 | 444 | 169 | 8 | 1 | 439 | 1 | 423 | 2.25e-169 | 483 |
MS.gene57575.t1 | MTR_1g004990 | 67.073 | 328 | 105 | 1 | 1 | 328 | 1 | 325 | 3.44e-166 | 474 |
MS.gene57575.t1 | MTR_0492s0030 | 68.987 | 316 | 96 | 1 | 1 | 314 | 1 | 316 | 1.60e-165 | 471 |
MS.gene57575.t1 | MTR_0543s0020 | 68.987 | 316 | 96 | 1 | 1 | 314 | 1 | 316 | 1.60e-165 | 471 |
MS.gene57575.t1 | MTR_1g075870 | 75.373 | 268 | 62 | 2 | 58 | 321 | 2 | 269 | 1.41e-155 | 442 |
MS.gene57575.t1 | MTR_7g097160 | 86.364 | 154 | 21 | 0 | 144 | 297 | 25 | 178 | 4.74e-98 | 298 |
MS.gene57575.t1 | MTR_7g006030 | 38.351 | 279 | 155 | 5 | 9 | 273 | 37 | 312 | 4.13e-60 | 207 |
MS.gene57575.t1 | MTR_3g110240 | 39.927 | 273 | 153 | 5 | 9 | 273 | 121 | 390 | 1.04e-59 | 207 |
MS.gene57575.t1 | MTR_7g085540 | 38.754 | 289 | 159 | 6 | 4 | 277 | 140 | 425 | 3.54e-59 | 206 |
MS.gene57575.t1 | MTR_1g007150 | 38.462 | 273 | 157 | 5 | 9 | 273 | 124 | 393 | 1.02e-58 | 204 |
MS.gene57575.t1 | MTR_1g116210 | 37.770 | 278 | 161 | 5 | 9 | 277 | 119 | 393 | 7.67e-58 | 202 |
MS.gene57575.t1 | MTR_8g014050 | 36.879 | 282 | 156 | 7 | 9 | 273 | 128 | 404 | 2.19e-52 | 187 |
MS.gene57575.t1 | MTR_7g116400 | 58.462 | 65 | 26 | 1 | 82 | 145 | 3 | 67 | 1.04e-18 | 81.3 |
MS.gene57575.t1 | MTR_5g022030 | 27.826 | 230 | 149 | 7 | 2 | 223 | 92 | 312 | 1.21e-13 | 73.6 |
MS.gene57575.t1 | MTR_5g022030 | 27.826 | 230 | 149 | 7 | 2 | 223 | 92 | 312 | 1.23e-13 | 73.2 |
MS.gene57575.t1 | MTR_5g007590 | 42.667 | 75 | 35 | 1 | 71 | 145 | 53 | 119 | 5.61e-12 | 63.2 |
MS.gene57575.t1 | MTR_7g106710 | 28.829 | 222 | 124 | 10 | 9 | 215 | 135 | 337 | 7.80e-12 | 67.4 |
MS.gene57575.t1 | MTR_7g106710 | 28.829 | 222 | 124 | 10 | 9 | 215 | 135 | 337 | 2.04e-11 | 66.2 |
MS.gene57575.t1 | MTR_5g092815 | 27.928 | 222 | 143 | 8 | 5 | 219 | 87 | 298 | 2.73e-11 | 65.5 |
MS.gene57575.t1 | MTR_8g079790 | 27.391 | 230 | 139 | 8 | 6 | 219 | 122 | 339 | 2.79e-11 | 65.9 |
MS.gene57575.t1 | MTR_3g466400 | 27.500 | 240 | 119 | 11 | 1 | 214 | 5 | 215 | 3.18e-11 | 65.5 |
MS.gene57575.t1 | MTR_4g006970 | 28.829 | 222 | 132 | 10 | 5 | 215 | 16 | 222 | 4.22e-11 | 65.1 |
MS.gene57575.t1 | MTR_3g099920 | 28.372 | 215 | 128 | 8 | 9 | 213 | 19 | 217 | 5.43e-11 | 65.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene57575.t1 | AT4G26100 | 73.729 | 472 | 83 | 7 | 1 | 453 | 1 | 450 | 0.0 | 701 |
MS.gene57575.t1 | AT5G57015 | 72.961 | 466 | 82 | 8 | 1 | 454 | 1 | 434 | 0.0 | 685 |
MS.gene57575.t1 | AT1G72710 | 71.915 | 470 | 103 | 7 | 1 | 446 | 1 | 465 | 0.0 | 660 |
MS.gene57575.t1 | AT2G19470 | 66.520 | 454 | 103 | 4 | 1 | 449 | 1 | 410 | 0.0 | 605 |
MS.gene57575.t1 | AT3G23340 | 61.556 | 450 | 147 | 8 | 1 | 445 | 1 | 429 | 0.0 | 546 |
MS.gene57575.t1 | AT5G44100 | 82.155 | 297 | 53 | 0 | 1 | 297 | 1 | 297 | 0.0 | 545 |
MS.gene57575.t1 | AT5G44100 | 82.155 | 297 | 53 | 0 | 1 | 297 | 1 | 297 | 0.0 | 545 |
MS.gene57575.t1 | AT1G03930 | 81.818 | 297 | 54 | 0 | 1 | 297 | 1 | 297 | 0.0 | 545 |
MS.gene57575.t1 | AT4G28540 | 61.276 | 439 | 138 | 7 | 1 | 425 | 5 | 425 | 0.0 | 529 |
MS.gene57575.t1 | AT4G14340 | 60.954 | 461 | 148 | 10 | 1 | 446 | 7 | 450 | 0.0 | 528 |
MS.gene57575.t1 | AT5G43320 | 61.538 | 442 | 129 | 8 | 1 | 411 | 1 | 432 | 0.0 | 521 |
MS.gene57575.t1 | AT1G04440 | 66.402 | 378 | 109 | 3 | 1 | 360 | 1 | 378 | 0.0 | 521 |
MS.gene57575.t1 | AT4G14340 | 73.414 | 331 | 85 | 2 | 1 | 331 | 7 | 334 | 0.0 | 520 |
MS.gene57575.t1 | AT5G43320 | 71.940 | 335 | 92 | 1 | 1 | 335 | 1 | 333 | 0.0 | 513 |
MS.gene57575.t1 | AT5G43320 | 71.940 | 335 | 92 | 1 | 1 | 335 | 1 | 333 | 0.0 | 513 |
MS.gene57575.t1 | AT3G23340 | 60.930 | 430 | 142 | 8 | 21 | 445 | 7 | 415 | 0.0 | 513 |
MS.gene57575.t1 | AT4G28880 | 73.041 | 319 | 85 | 1 | 1 | 319 | 1 | 318 | 0.0 | 512 |
MS.gene57575.t1 | AT4G28880 | 73.041 | 319 | 85 | 1 | 1 | 319 | 1 | 318 | 0.0 | 512 |
MS.gene57575.t1 | AT4G28880 | 73.041 | 319 | 85 | 1 | 1 | 319 | 1 | 318 | 0.0 | 512 |
MS.gene57575.t1 | AT4G28880 | 73.041 | 319 | 85 | 1 | 1 | 319 | 1 | 318 | 0.0 | 512 |
MS.gene57575.t1 | AT4G28860 | 72.414 | 319 | 87 | 1 | 1 | 319 | 1 | 318 | 8.88e-180 | 507 |
MS.gene57575.t1 | AT4G28860 | 72.414 | 319 | 87 | 1 | 1 | 319 | 1 | 318 | 2.18e-179 | 508 |
MS.gene57575.t1 | AT4G08800 | 70.627 | 303 | 57 | 2 | 1 | 303 | 1 | 271 | 2.13e-159 | 452 |
MS.gene57575.t1 | AT2G25760 | 40.070 | 287 | 155 | 5 | 4 | 273 | 100 | 386 | 6.48e-64 | 218 |
MS.gene57575.t1 | AT2G25760 | 39.373 | 287 | 154 | 6 | 4 | 273 | 100 | 383 | 9.26e-61 | 210 |
MS.gene57575.t1 | AT3G03940 | 39.446 | 289 | 157 | 6 | 4 | 277 | 133 | 418 | 1.05e-59 | 207 |
MS.gene57575.t1 | AT5G18190 | 39.100 | 289 | 158 | 6 | 4 | 277 | 123 | 408 | 2.04e-59 | 206 |
MS.gene57575.t1 | AT5G18190 | 39.100 | 289 | 158 | 6 | 4 | 277 | 123 | 408 | 2.04e-59 | 206 |
MS.gene57575.t1 | AT3G13670 | 36.749 | 283 | 162 | 5 | 9 | 277 | 137 | 416 | 4.20e-57 | 201 |
MS.gene57575.t1 | AT2G17890 | 26.667 | 225 | 148 | 8 | 7 | 223 | 106 | 321 | 6.29e-13 | 71.2 |
MS.gene57575.t1 | AT3G50530 | 27.234 | 235 | 130 | 8 | 6 | 219 | 145 | 359 | 2.78e-12 | 69.3 |
MS.gene57575.t1 | AT3G06030 | 27.602 | 221 | 131 | 9 | 8 | 213 | 67 | 273 | 2.76e-11 | 66.2 |
MS.gene57575.t1 | AT5G58380 | 27.660 | 235 | 112 | 10 | 7 | 214 | 10 | 213 | 3.12e-11 | 65.9 |
MS.gene57575.t1 | AT4G36070 | 25.792 | 221 | 147 | 7 | 7 | 219 | 69 | 280 | 7.84e-11 | 64.7 |
MS.gene57575.t1 | AT1G54960 | 27.615 | 239 | 132 | 12 | 8 | 229 | 67 | 281 | 8.27e-11 | 64.7 |
MS.gene57575.t1 | AT1G54960 | 27.615 | 239 | 132 | 12 | 8 | 229 | 67 | 281 | 8.27e-11 | 64.7 |
MS.gene57575.t1 | AT4G36070 | 25.792 | 221 | 147 | 7 | 7 | 219 | 69 | 280 | 8.62e-11 | 64.3 |
Find 112 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTCTCATACTTCTGTTTCT+TGG | 0.175329 | 8.4:-9127955 | None:intergenic |
ATCACCTTTGTTTAGGTTCC+TGG | 0.223280 | 8.4:+9128532 | MS.gene57575:intron |
TCCATTACTGTCGCTCATTA+AGG | 0.251089 | 8.4:+9128141 | MS.gene57575:CDS |
CAGGTTTATGCTATTGATTT+TGG | 0.265027 | 8.4:+9125536 | MS.gene57575:intron |
ATTCCAAATGTTAGATGGTT+TGG | 0.290598 | 8.4:+9125112 | MS.gene57575:CDS |
GAAACTTACAGTATTCAAAA+TGG | 0.319132 | 8.4:-9129197 | None:intergenic |
AGATCGGTAGTGGTTCCTTT+GGG | 0.333216 | 8.4:+9123836 | MS.gene57575:CDS |
TCCCAGACCGTGCTACTCTC+TGG | 0.336103 | 8.4:-9131352 | None:intergenic |
TTTGTTTAGGTTCCTGGTGC+TGG | 0.338785 | 8.4:+9128538 | MS.gene57575:intron |
CCCATCAACACATTCCTTAC+AGG | 0.339922 | 8.4:+9125588 | MS.gene57575:CDS |
CTGGAATTCCAAATGTTAGA+TGG | 0.344906 | 8.4:+9125107 | MS.gene57575:CDS |
ATTCTATGTGCTGCTGCTCC+AGG | 0.385424 | 8.4:-9131287 | None:intergenic |
AAGGGCACTTTCATAGTTAG+TGG | 0.388491 | 8.4:-9131390 | None:intergenic |
AGCAGGTGGCATTGCAGAAC+TGG | 0.388903 | 8.4:-9128563 | None:intergenic |
TCAAACCTTCACGGATAAAC+AGG | 0.392297 | 8.4:-9128211 | None:intergenic |
TCCTCTAGGCGCAGAATGTC+GGG | 0.395147 | 8.4:+9129172 | MS.gene57575:CDS |
ACTCCAAACCATCTAACATT+TGG | 0.400425 | 8.4:-9125115 | None:intergenic |
CTAACTATGAAAGTGCCCTT+AGG | 0.400516 | 8.4:+9131393 | MS.gene57575:CDS |
CCCCAGAGAGTAGCACGGTC+TGG | 0.400537 | 8.4:+9131350 | MS.gene57575:CDS |
CCCAGACCGTGCTACTCTCT+GGG | 0.401614 | 8.4:-9131351 | None:intergenic |
CTTACTCCAGGCCTTATGTC+GGG | 0.404462 | 8.4:+9128091 | MS.gene57575:intron |
AGTCAAACACATAATCAAAC+TGG | 0.409250 | 8.4:-9128379 | None:intergenic |
AAGATCGGTAGTGGTTCCTT+TGG | 0.414217 | 8.4:+9123835 | MS.gene57575:CDS |
GCTAGCGTATCTTGCAGTTC+CGG | 0.415896 | 8.4:-9127641 | None:intergenic |
GTTATCAAGTTCCAATGTCT+TGG | 0.426850 | 8.4:+9131163 | MS.gene57575:intron |
AGTAGTCGTGATGCATTTGT+TGG | 0.429883 | 8.4:+9131224 | MS.gene57575:CDS |
CGCACTGCTGAGGCTAGCCC+TGG | 0.430913 | 8.4:+9131269 | MS.gene57575:CDS |
CAGATTATGCTTATCTCAAA+AGG | 0.437611 | 8.4:+9128177 | MS.gene57575:CDS |
AATCCCATTAGAAAATTATC+CGG | 0.440273 | 8.4:-9125399 | None:intergenic |
TCCTTTGGGGAGATCTACTT+AGG | 0.441242 | 8.4:+9123850 | MS.gene57575:CDS |
TGTTAGATGGTTTGGAGTAG+AGG | 0.442717 | 8.4:+9125120 | MS.gene57575:CDS |
ATGGAAGTATGATGCAAATT+CGG | 0.452550 | 8.4:-9128123 | None:intergenic |
ACCTGTAAGGAATGTGTTGA+TGG | 0.455255 | 8.4:-9125589 | None:intergenic |
TCTTATGCTTGCTGATCAAA+TGG | 0.455843 | 8.4:+9125234 | MS.gene57575:CDS |
GTTAGATGGTTTGGAGTAGA+GGG | 0.456466 | 8.4:+9125121 | MS.gene57575:CDS |
GTAATAATTACCTCCCTCTC+AGG | 0.458309 | 8.4:-9127838 | None:intergenic |
TAACTATGAAAGTGCCCTTA+GGG | 0.461605 | 8.4:+9131394 | MS.gene57575:CDS |
AGAGATGATTTAGAGTCTCT+TGG | 0.461724 | 8.4:+9127797 | MS.gene57575:CDS |
TGGTTTCGGTGGATTCCTCT+AGG | 0.466343 | 8.4:+9129158 | MS.gene57575:CDS |
AGTTTGATTATGTGTTTGAC+TGG | 0.466635 | 8.4:+9128381 | MS.gene57575:CDS |
ACTAAATCTTTGTACCTGTA+AGG | 0.467328 | 8.4:-9125602 | None:intergenic |
CGCGACCTGTTTATCCGTGA+AGG | 0.474225 | 8.4:+9128206 | MS.gene57575:CDS |
CTGGAGAATTCTGTACAACT+TGG | 0.479580 | 8.4:-9124973 | None:intergenic |
CCCAGAGAGTAGCACGGTCT+GGG | 0.480250 | 8.4:+9131351 | MS.gene57575:CDS |
ATTAGGAAGGCGTGCGAACC+AGG | 0.481817 | 8.4:+9125419 | MS.gene57575:CDS |
TTATCAAGTTCCAATGTCTT+GGG | 0.487659 | 8.4:+9131164 | MS.gene57575:CDS |
AAACTTACAGTATTCAAAAT+GGG | 0.489433 | 8.4:-9129196 | None:intergenic |
GAATCCACCGAAACCAAACC+AGG | 0.492539 | 8.4:-9129151 | None:intergenic |
TTCCTCTAGGCGCAGAATGT+CGG | 0.497991 | 8.4:+9129171 | MS.gene57575:CDS |
CAAGTTGTACAGAATTCTCC+AGG | 0.500434 | 8.4:+9124974 | MS.gene57575:CDS |
ACCAGTGCTGATAGACATAC+AGG | 0.504504 | 8.4:+9128589 | MS.gene57575:CDS |
GGTTGGATAACCCCGACATA+AGG | 0.505765 | 8.4:-9128102 | None:intergenic |
GCTTGCTACACCTCCAGCAC+GGG | 0.506533 | 8.4:+9128430 | MS.gene57575:CDS |
TTTGAATGGAACCTCGTGTT+GGG | 0.509162 | 8.4:+9123791 | None:intergenic |
CCTTACTCCAGGCCTTATGT+CGG | 0.510981 | 8.4:+9128090 | MS.gene57575:intron |
ATGAATACTCACCTTGGCAT+TGG | 0.516193 | 8.4:+9127664 | MS.gene57575:CDS |
GCAAACCGTCCATGCCCCTA+AGG | 0.525024 | 8.4:-9131409 | None:intergenic |
ACACTTACAATTCCCCGTGC+TGG | 0.533191 | 8.4:-9128443 | None:intergenic |
ACCTGTATGTCTATCAGCAC+TGG | 0.535307 | 8.4:-9128590 | None:intergenic |
CCTTGGCAGGGACTTAAAGC+AGG | 0.537413 | 8.4:+9127930 | MS.gene57575:CDS |
AGCTTGCTACACCTCCAGCA+CGG | 0.539768 | 8.4:+9128429 | MS.gene57575:CDS |
GCAGAACTGGTTCCAGCACC+AGG | 0.542045 | 8.4:-9128550 | None:intergenic |
TGAAAGTGCCCTTAGGGGCA+TGG | 0.545914 | 8.4:+9131400 | MS.gene57575:CDS |
ACTTGATTGACCCAAGACAT+TGG | 0.547957 | 8.4:-9131174 | None:intergenic |
AATAGTCATTACTTCCTCCC+TGG | 0.548168 | 8.4:-9124992 | None:intergenic |
TTTCGCCTTGGTAGGAAGAT+CGG | 0.549005 | 8.4:+9123820 | MS.gene57575:CDS |
GTTGGGAATAAGTTTCGCCT+TGG | 0.555446 | 8.4:+9123808 | MS.gene57575:CDS |
CTGTCTCTTACAGGAGCAGA+AGG | 0.562373 | 8.4:+9129121 | MS.gene57575:intron |
ACCTTAATGAGCGACAGTAA+TGG | 0.563244 | 8.4:-9128142 | None:intergenic |
TTAAATAGATCTTCAAGACT+AGG | 0.564483 | 8.4:-9125178 | None:intergenic |
TTCTATGTGCTGCTGCTCCA+GGG | 0.567837 | 8.4:-9131286 | None:intergenic |
CTTGGTAGGAAGATCGGTAG+TGG | 0.568381 | 8.4:+9123826 | MS.gene57575:CDS |
AAGTATGATGCAAATTCGGT+TGG | 0.569583 | 8.4:-9128119 | None:intergenic |
GGAATAAGTTTCGCCTTGGT+AGG | 0.570201 | 8.4:+9123812 | MS.gene57575:CDS |
CTATCAGCACTGGTAACAGC+AGG | 0.574738 | 8.4:-9128580 | None:intergenic |
AGTGCCCTTAGGGGCATGGA+CGG | 0.576647 | 8.4:+9131404 | MS.gene57575:CDS |
GGTCAAAGAAGTTCACCAAT+CGG | 0.577532 | 8.4:+9131317 | MS.gene57575:CDS |
TTACTCCAGGCCTTATGTCG+GGG | 0.581815 | 8.4:+9128092 | MS.gene57575:intron |
GTCAATCAAGTGGATCATCT+AGG | 0.582343 | 8.4:+9131186 | MS.gene57575:CDS |
CAAACCGTCCATGCCCCTAA+GGG | 0.586507 | 8.4:-9131408 | None:intergenic |
TCTACATCGAGATATCAAAC+CGG | 0.587386 | 8.4:+9125380 | MS.gene57575:CDS |
AATGTCTTGGGTCAATCAAG+TGG | 0.599106 | 8.4:+9131176 | MS.gene57575:CDS |
TGATGTACTTCCTGAGAGGG+AGG | 0.604380 | 8.4:+9127828 | MS.gene57575:CDS |
TTGGACTCGTACAGCAGCTG+AGG | 0.611846 | 8.4:-9124954 | None:intergenic |
CTTACAATTCCCCGTGCTGG+AGG | 0.614854 | 8.4:-9128440 | None:intergenic |
ATTTGAATGGAACCTCGTGT+TGG | 0.616512 | 8.4:+9123790 | None:intergenic |
TAATATTCAAACTAACGAAG+AGG | 0.623322 | 8.4:+9123966 | MS.gene57575:CDS |
TGTTCGTACACGCACTGCTG+AGG | 0.626085 | 8.4:+9131259 | MS.gene57575:CDS |
GATCGGTAGTGGTTCCTTTG+GGG | 0.627195 | 8.4:+9123837 | MS.gene57575:CDS |
TGGGGATCAGAAGATCCGAT+TGG | 0.639979 | 8.4:-9131332 | None:intergenic |
CCTGTAAGGAATGTGTTGAT+GGG | 0.643929 | 8.4:-9125588 | None:intergenic |
CACTACCGATCTTCCTACCA+AGG | 0.644344 | 8.4:-9123825 | None:intergenic |
TCCCGACATTCTGCGCCTAG+AGG | 0.644999 | 8.4:-9129173 | None:intergenic |
AACTATGAAAGTGCCCTTAG+GGG | 0.645280 | 8.4:+9131395 | MS.gene57575:CDS |
CCTGCTTTAAGTCCCTGCCA+AGG | 0.645862 | 8.4:-9127930 | None:intergenic |
CTTCACGGATAAACAGGTCG+CGG | 0.654448 | 8.4:-9128205 | None:intergenic |
ACCTAAGTAGATCTCCCCAA+AGG | 0.656641 | 8.4:-9123851 | None:intergenic |
TGATTGCTGATACTTCAAGA+TGG | 0.656935 | 8.4:-9128405 | None:intergenic |
CGAAACTTATTCCCAACACG+AGG | 0.659639 | 8.4:-9123802 | None:intergenic |
ACTAACACATACCAATGCCA+AGG | 0.659734 | 8.4:-9127675 | None:intergenic |
TCAGCACTGGTAACAGCAGG+TGG | 0.661755 | 8.4:-9128577 | None:intergenic |
GCTAGCATGAATACTCACCT+TGG | 0.662753 | 8.4:+9127658 | MS.gene57575:CDS |
TCGAATGAATGAACTCAACA+CGG | 0.674813 | 8.4:-9125350 | None:intergenic |
CTTGCTACACCTCCAGCACG+GGG | 0.676948 | 8.4:+9128431 | MS.gene57575:CDS |
CTGATCCCCAGAGAGTAGCA+CGG | 0.679049 | 8.4:+9131345 | MS.gene57575:CDS |
ATCCACCGAAACCAAACCAG+GGG | 0.683167 | 8.4:-9129149 | None:intergenic |
TGTCTCTTACAGGAGCAGAA+GGG | 0.684538 | 8.4:+9129122 | MS.gene57575:intron |
CCAGACCGTGCTACTCTCTG+GGG | 0.692058 | 8.4:-9131350 | None:intergenic |
AATCCACCGAAACCAAACCA+GGG | 0.699645 | 8.4:-9129150 | None:intergenic |
AAGTTGTACAGAATTCTCCA+GGG | 0.726240 | 8.4:+9124975 | MS.gene57575:CDS |
TCCACCGAAACCAAACCAGG+GGG | 0.759140 | 8.4:-9129148 | None:intergenic |
TTGTACAGAATTCTCCAGGG+AGG | 0.760608 | 8.4:+9124978 | MS.gene57575:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.4 | gene | 9123796 | 9131463 | 9123796 | ID=MS.gene57575 |
chr8.4 | mRNA | 9123796 | 9131463 | 9123796 | ID=MS.gene57575.t1;Parent=MS.gene57575 |
chr8.4 | exon | 9123796 | 9123871 | 9123796 | ID=MS.gene57575.t1.exon1;Parent=MS.gene57575.t1 |
chr8.4 | CDS | 9123796 | 9123871 | 9123796 | ID=cds.MS.gene57575.t1;Parent=MS.gene57575.t1 |
chr8.4 | exon | 9123962 | 9124002 | 9123962 | ID=MS.gene57575.t1.exon2;Parent=MS.gene57575.t1 |
chr8.4 | CDS | 9123962 | 9124002 | 9123962 | ID=cds.MS.gene57575.t1;Parent=MS.gene57575.t1 |
chr8.4 | exon | 9124933 | 9125002 | 9124933 | ID=MS.gene57575.t1.exon3;Parent=MS.gene57575.t1 |
chr8.4 | CDS | 9124933 | 9125002 | 9124933 | ID=cds.MS.gene57575.t1;Parent=MS.gene57575.t1 |
chr8.4 | exon | 9125107 | 9125255 | 9125107 | ID=MS.gene57575.t1.exon4;Parent=MS.gene57575.t1 |
chr8.4 | CDS | 9125107 | 9125255 | 9125107 | ID=cds.MS.gene57575.t1;Parent=MS.gene57575.t1 |
chr8.4 | exon | 9125345 | 9125440 | 9125345 | ID=MS.gene57575.t1.exon5;Parent=MS.gene57575.t1 |
chr8.4 | CDS | 9125345 | 9125440 | 9125345 | ID=cds.MS.gene57575.t1;Parent=MS.gene57575.t1 |
chr8.4 | exon | 9125539 | 9125609 | 9125539 | ID=MS.gene57575.t1.exon6;Parent=MS.gene57575.t1 |
chr8.4 | CDS | 9125539 | 9125609 | 9125539 | ID=cds.MS.gene57575.t1;Parent=MS.gene57575.t1 |
chr8.4 | exon | 9127624 | 9127685 | 9127624 | ID=MS.gene57575.t1.exon7;Parent=MS.gene57575.t1 |
chr8.4 | CDS | 9127624 | 9127685 | 9127624 | ID=cds.MS.gene57575.t1;Parent=MS.gene57575.t1 |
chr8.4 | exon | 9127786 | 9127849 | 9127786 | ID=MS.gene57575.t1.exon8;Parent=MS.gene57575.t1 |
chr8.4 | CDS | 9127786 | 9127849 | 9127786 | ID=cds.MS.gene57575.t1;Parent=MS.gene57575.t1 |
chr8.4 | exon | 9127926 | 9128010 | 9127926 | ID=MS.gene57575.t1.exon9;Parent=MS.gene57575.t1 |
chr8.4 | CDS | 9127926 | 9128010 | 9127926 | ID=cds.MS.gene57575.t1;Parent=MS.gene57575.t1 |
chr8.4 | exon | 9128101 | 9128227 | 9128101 | ID=MS.gene57575.t1.exon10;Parent=MS.gene57575.t1 |
chr8.4 | CDS | 9128101 | 9128227 | 9128101 | ID=cds.MS.gene57575.t1;Parent=MS.gene57575.t1 |
chr8.4 | exon | 9128375 | 9128457 | 9128375 | ID=MS.gene57575.t1.exon11;Parent=MS.gene57575.t1 |
chr8.4 | CDS | 9128375 | 9128457 | 9128375 | ID=cds.MS.gene57575.t1;Parent=MS.gene57575.t1 |
chr8.4 | exon | 9128547 | 9128610 | 9128547 | ID=MS.gene57575.t1.exon12;Parent=MS.gene57575.t1 |
chr8.4 | CDS | 9128547 | 9128610 | 9128547 | ID=cds.MS.gene57575.t1;Parent=MS.gene57575.t1 |
chr8.4 | exon | 9129134 | 9129210 | 9129134 | ID=MS.gene57575.t1.exon13;Parent=MS.gene57575.t1 |
chr8.4 | CDS | 9129134 | 9129210 | 9129134 | ID=cds.MS.gene57575.t1;Parent=MS.gene57575.t1 |
chr8.4 | exon | 9131164 | 9131463 | 9131164 | ID=MS.gene57575.t1.exon14;Parent=MS.gene57575.t1 |
chr8.4 | CDS | 9131164 | 9131463 | 9131164 | ID=cds.MS.gene57575.t1;Parent=MS.gene57575.t1 |
Gene Sequence |
Protein sequence |