Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052041.t1 | XP_013465436.1 | 94.5 | 454 | 24 | 1 | 1 | 454 | 1 | 453 | 1.00E-229 | 805.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052041.t1 | A0A072VCZ8 | 94.5 | 454 | 24 | 1 | 1 | 454 | 1 | 453 | 7.3e-230 | 805.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049989 | MS.gene052041 | 0.809544 | 1.80E-50 | -1.69E-46 |
| MS.gene052041 | MS.gene068607 | 0.81857 | 1.83E-52 | -1.69E-46 |
| MS.gene052041 | MS.gene28050 | 0.802831 | 4.65E-49 | -1.69E-46 |
| MS.gene052041 | MS.gene57320 | 0.807025 | 6.18E-50 | -1.69E-46 |
| MS.gene052041 | MS.gene58772 | 0.802591 | 5.22E-49 | -1.69E-46 |
| MS.gene052041 | MS.gene63853 | 0.807861 | 4.11E-50 | -1.69E-46 |
| MS.gene052041 | MS.gene66288 | 0.807301 | 5.40E-50 | -1.69E-46 |
| MS.gene052041 | MS.gene99093 | 0.814463 | 1.52E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052041.t1 | MTR_2g098330 | 94.493 | 454 | 24 | 1 | 1 | 454 | 1 | 453 | 0.0 | 840 |
| MS.gene052041.t1 | MTR_2g098330 | 94.273 | 454 | 24 | 2 | 1 | 454 | 1 | 452 | 0.0 | 833 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052041.t1 | AT5G12930 | 48.354 | 395 | 176 | 12 | 1 | 386 | 1 | 376 | 5.34e-108 | 327 |
Find 98 sgRNAs with CRISPR-Local
Find 220 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCTTATTGTTGCTGTTAT+TGG | 0.223426 | 2.2:-4392525 | MS.gene052041:CDS |
| AAAGAAGGATTTGGTTGTTC+TGG | 0.252617 | 2.2:-4389647 | MS.gene052041:CDS |
| AATTGTAGATTCAGAATTCT+TGG | 0.260695 | 2.2:+4389094 | None:intergenic |
| TTCCTTCTGTAATGAATATA+TGG | 0.287784 | 2.2:-4390782 | MS.gene052041:intron |
| AATGTCTGGCTTGTCGGATT+TGG | 0.295447 | 2.2:-4390369 | MS.gene052041:CDS |
| TAGAGAAGGGTGACTTATAT+TGG | 0.298699 | 2.2:+4390414 | None:intergenic |
| CTGAATTAGAAGACATTATA+CGG | 0.313995 | 2.2:-4389696 | MS.gene052041:CDS |
| TTCAAAACTAAAGAAGGATT+TGG | 0.320274 | 2.2:-4389656 | MS.gene052041:CDS |
| TGCTGCTGCTCAGTCGAAAA+AGG | 0.366542 | 2.2:-4392499 | MS.gene052041:CDS |
| TTGCAATTAGATGAAACATT+TGG | 0.367954 | 2.2:-4390859 | MS.gene052041:CDS |
| TTAAGAAATCCGTTGAGCTT+AGG | 0.369730 | 2.2:-4392458 | MS.gene052041:CDS |
| AGATAACCTCATTTATGATA+TGG | 0.377526 | 2.2:-4389204 | MS.gene052041:CDS |
| TGTGGCAGCTGAATTTCATT+TGG | 0.377686 | 2.2:+4389233 | None:intergenic |
| TAAGAAGGAATTTCTTTAAG+AGG | 0.384480 | 2.2:+4388990 | None:intergenic |
| TAAGAAATCCGTTGAGCTTA+GGG | 0.394216 | 2.2:-4392457 | MS.gene052041:intron |
| CAGACATTCTTCTCTCCTCT+TGG | 0.398506 | 2.2:+4390384 | None:intergenic |
| AAGATGTTTATAATCTTAAG+AGG | 0.402964 | 2.2:-4389895 | MS.gene052041:CDS |
| CTCAGAAGAGTTTAGCAGAT+TGG | 0.411871 | 2.2:+4389835 | None:intergenic |
| AACAATTTCAAAACTAAAGA+AGG | 0.414561 | 2.2:-4389662 | MS.gene052041:CDS |
| CACATCTGCTGCTGATATCC+AGG | 0.416831 | 2.2:-4390336 | MS.gene052041:intron |
| ACAATAAGAAACCGATGAAT+AGG | 0.418221 | 2.2:+4392537 | None:intergenic |
| CAAGAGGAGAGAAGAATGTC+TGG | 0.419161 | 2.2:-4390383 | MS.gene052041:CDS |
| TGCAGGTTATGCAGCTTTCA+AGG | 0.419818 | 2.2:-4389286 | MS.gene052041:intron |
| CGTTAACAACCCGTCCTTGA+AGG | 0.436333 | 2.2:+4392640 | None:intergenic |
| CTCTTGGTCTTCATTAGAGA+AGG | 0.441119 | 2.2:+4390400 | None:intergenic |
| GGTAATGGTGAAGTAGCGTT+AGG | 0.448670 | 2.2:+4392774 | None:intergenic |
| TTTGGTTGTTCTGGAACAAA+AGG | 0.449334 | 2.2:-4389638 | MS.gene052041:intron |
| CGACGGCGGGAGAGAGTGAT+TGG | 0.450699 | 2.2:+4392732 | None:intergenic |
| GTTGCCGTTAGAGTTGTTCA+TGG | 0.453633 | 2.2:+4392797 | None:intergenic |
| TAATTGCAATTCTCCGTCCT+TGG | 0.457323 | 2.2:+4390873 | None:intergenic |
| GTTGGTAGAATGACATCAAC+AGG | 0.459761 | 2.2:+4389116 | None:intergenic |
| TGATGAACTTGCATTTGCTT+GGG | 0.460645 | 2.2:-4392571 | MS.gene052041:CDS |
| GAGAAGAATGTCTGGCTTGT+CGG | 0.462441 | 2.2:-4390375 | MS.gene052041:CDS |
| GCATTAGATTTCTGATAAGA+AGG | 0.463964 | 2.2:+4388975 | None:intergenic |
| AGATCTTGTGCATTGTTGAC+AGG | 0.464468 | 2.2:+4389140 | None:intergenic |
| GCTAGAACTGTTGGTGGTGG+TGG | 0.466474 | 2.2:-4392600 | MS.gene052041:CDS |
| ATTTGGAATACTTGCAGAGA+AGG | 0.479701 | 2.2:+4389250 | None:intergenic |
| AGTTTGTTGATTGCGGTTGT+TGG | 0.481813 | 2.2:-4390822 | MS.gene052041:CDS |
| GTGATGAACTTGCATTTGCT+TGG | 0.487161 | 2.2:-4392572 | MS.gene052041:CDS |
| ATGAGGTTATCTCTCATTTG+TGG | 0.489300 | 2.2:+4389215 | None:intergenic |
| TTGCAATTCTCCGTCCTTGG+TGG | 0.492663 | 2.2:+4390876 | None:intergenic |
| TTATACTCAGTTTAACAACT+TGG | 0.495816 | 2.2:-4389927 | MS.gene052041:intron |
| AAAACAATTGTCACCTCGTA+AGG | 0.497486 | 2.2:-4388934 | MS.gene052041:CDS |
| CTGGATTAACCTTCAAGGAC+GGG | 0.510704 | 2.2:-4392649 | MS.gene052041:CDS |
| GGCGGAGAGACGACGACGGC+GGG | 0.511854 | 2.2:+4392719 | None:intergenic |
| ATGGCCTGGATTAACCTTCA+AGG | 0.513528 | 2.2:-4392654 | MS.gene052041:CDS |
| CCGCCGCAACGGTCGAGCCG+CGG | 0.517144 | 2.2:-4392701 | MS.gene052041:CDS |
| TTGGAGGACCTCATTTCCAC+TGG | 0.518085 | 2.2:+4390433 | None:intergenic |
| TGAAGGTTAATCCAGGCCAT+TGG | 0.520684 | 2.2:+4392657 | None:intergenic |
| AGTAGAAGACGATCTCTCAA+TGG | 0.533967 | 2.2:-4388900 | MS.gene052041:CDS |
| TACCATATATTCATTACAGA+AGG | 0.538276 | 2.2:+4390780 | None:intergenic |
| GTGCGAGTGCAAATAAGAGA+TGG | 0.543346 | 2.2:-4388869 | MS.gene052041:CDS |
| GTAGATTCAGAATTCTTGGT+TGG | 0.551861 | 2.2:+4389098 | None:intergenic |
| TCGTCGTCTCTCCGCCGCAA+CGG | 0.552443 | 2.2:-4392712 | MS.gene052041:CDS |
| ACGCCGCGGCTCGACCGTTG+CGG | 0.555310 | 2.2:+4392698 | None:intergenic |
| CGAATTAAGTTTGTTGATTG+CGG | 0.555870 | 2.2:-4390829 | MS.gene052041:CDS |
| AGAAGGGTGACTTATATTGG+AGG | 0.556146 | 2.2:+4390417 | None:intergenic |
| AAGAGCCTCCAGTGGAAATG+AGG | 0.559249 | 2.2:-4390441 | MS.gene052041:CDS |
| TAAGAGGGACTGTGATGAGA+AGG | 0.561669 | 2.2:-4389879 | MS.gene052041:CDS |
| CCGTCCTTGAAGGTTAATCC+AGG | 0.562538 | 2.2:+4392650 | None:intergenic |
| CCGCGGCTCGACCGTTGCGG+CGG | 0.564992 | 2.2:+4392701 | None:intergenic |
| GGAATACTTGCAGAGAAGGA+TGG | 0.566765 | 2.2:+4389254 | None:intergenic |
| GCTAGCGCGGCTAGAACTGT+TGG | 0.566998 | 2.2:-4392609 | MS.gene052041:CDS |
| ACTATCAGAATCAGAAGATG+AGG | 0.570063 | 2.2:+4389166 | None:intergenic |
| AGCGCGGCTAGAACTGTTGG+TGG | 0.575091 | 2.2:-4392606 | MS.gene052041:CDS |
| GTAATGGTGAAGTAGCGTTA+GGG | 0.578358 | 2.2:+4392775 | None:intergenic |
| TCTTGGTCTTCATTAGAGAA+GGG | 0.582381 | 2.2:+4390401 | None:intergenic |
| CGGCGGGAGAGAGTGATTGG+TGG | 0.585218 | 2.2:+4392735 | None:intergenic |
| ATCAGAAGATGAGGGGCTAG+TGG | 0.588405 | 2.2:+4389175 | None:intergenic |
| CCTGGATTAACCTTCAAGGA+CGG | 0.589852 | 2.2:-4392650 | MS.gene052041:CDS |
| TGCTGTCCATATCATAAATG+AGG | 0.592185 | 2.2:+4389198 | None:intergenic |
| TGCGAGTGCAAATAAGAGAT+GGG | 0.593088 | 2.2:-4388868 | MS.gene052041:CDS |
| CTATCAGAATCAGAAGATGA+GGG | 0.593200 | 2.2:+4389167 | None:intergenic |
| TCAGCTGTTATCAAGCATGC+AGG | 0.594282 | 2.2:-4390971 | MS.gene052041:CDS |
| AACAAGTTATCCACCAAGGA+CGG | 0.594366 | 2.2:-4390886 | MS.gene052041:CDS |
| AATTTCTTTAAGAGGACTAG+CGG | 0.594712 | 2.2:+4388998 | None:intergenic |
| TTCTGAGGTTGCTAATAGCA+AGG | 0.595094 | 2.2:-4389819 | MS.gene052041:intron |
| AGATGTTTATAATCTTAAGA+GGG | 0.615181 | 2.2:-4389894 | MS.gene052041:CDS |
| ACTGGAGGCTCTTCTACTCA+AGG | 0.617031 | 2.2:+4390451 | None:intergenic |
| ATTGGCTTCGAAAATGAGAT+CGG | 0.626620 | 2.2:+4392675 | None:intergenic |
| GCGGCTAGAACTGTTGGTGG+TGG | 0.627114 | 2.2:-4392603 | MS.gene052041:CDS |
| GAGGACCTCATTTCCACTGG+AGG | 0.630298 | 2.2:+4390436 | None:intergenic |
| CTTCTCTAATGAAGACCAAG+AGG | 0.641341 | 2.2:-4390399 | MS.gene052041:CDS |
| GCTTCCATGAACAACTCTAA+CGG | 0.643301 | 2.2:-4392801 | None:intergenic |
| CGGCGGAGAGACGACGACGG+CGG | 0.644260 | 2.2:+4392718 | None:intergenic |
| CAATCTGCTAAACTCTTCTG+AGG | 0.648603 | 2.2:-4389834 | MS.gene052041:CDS |
| ATAAGAAACCGATGAATAGG+CGG | 0.650348 | 2.2:+4392540 | None:intergenic |
| TATACATACCCTAAGCTCAA+CGG | 0.651300 | 2.2:+4392449 | None:intergenic |
| GGTGGAATTGAAACGAGACA+TGG | 0.665905 | 2.2:+4392753 | None:intergenic |
| TTGAGTAGAAGAGCCTCCAG+TGG | 0.670401 | 2.2:-4390449 | MS.gene052041:CDS |
| ATTGAAACGAGACATGGTAA+TGG | 0.670705 | 2.2:+4392759 | None:intergenic |
| TATCAGAATCAGAAGATGAG+GGG | 0.677495 | 2.2:+4389168 | None:intergenic |
| TAACGCTGATGAAGCTAGCG+CGG | 0.686137 | 2.2:-4392622 | MS.gene052041:CDS |
| TAGCGGATTGAAATTTCGAG+CGG | 0.689209 | 2.2:+4389015 | None:intergenic |
| GAAAATGAGATCGGACGCCG+CGG | 0.709704 | 2.2:+4392684 | None:intergenic |
| TATCAACAAGTTATCCACCA+AGG | 0.743771 | 2.2:-4390890 | MS.gene052041:CDS |
| AATTAGAAGACATTATACGG+AGG | 0.745017 | 2.2:-4389693 | MS.gene052041:CDS |
| TTGCGGCGGAGAGACGACGA+CGG | 0.751092 | 2.2:+4392715 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAGAATTTAAAAGTCAAAT+CGG | + | chr2.2:4392205-4392224 | None:intergenic | 15.0% |
| !! | TACTAAATATAGTCAAATAA+TGG | - | chr2.2:4391058-4391077 | MS.gene052041:intron | 15.0% |
| !! | TTATAAATACATCATATATC+AGG | - | chr2.2:4391401-4391420 | MS.gene052041:intron | 15.0% |
| !!! | TTTTTAAATTAAGATTGTAG+AGG | + | chr2.2:4389704-4389723 | None:intergenic | 15.0% |
| !! | AAAAACTTAGTGTTATATAG+CGG | - | chr2.2:4390995-4391014 | MS.gene052041:intron | 20.0% |
| !! | AACAATTTCAAAACTAAAGA+AGG | - | chr2.2:4391996-4392015 | MS.gene052041:intron | 20.0% |
| !! | AAGATGTTTATAATCTTAAG+AGG | - | chr2.2:4391763-4391782 | MS.gene052041:intron | 20.0% |
| !! | AATTAGTAATTGCTTAATTG+TGG | - | chr2.2:4391554-4391573 | MS.gene052041:intron | 20.0% |
| !! | AGATGTTTATAATCTTAAGA+GGG | - | chr2.2:4391764-4391783 | MS.gene052041:intron | 20.0% |
| !! | ATAGAACTATTAAAAACACA+AGG | + | chr2.2:4391672-4391691 | None:intergenic | 20.0% |
| !! | TGAAATGCTTCTTATATTAA+TGG | - | chr2.2:4392333-4392352 | MS.gene052041:intron | 20.0% |
| !! | TGTTATGTTAATAGTCATTT+GGG | - | chr2.2:4389480-4389499 | MS.gene052041:intron | 20.0% |
| !! | TTGAATGTGTGTATTAATAT+TGG | - | chr2.2:4390639-4390658 | MS.gene052041:intron | 20.0% |
| !! | TTGTTATGTTAATAGTCATT+TGG | - | chr2.2:4389479-4389498 | MS.gene052041:intron | 20.0% |
| !!! | ATTTGTTATAATATTGTTGC+TGG | - | chr2.2:4389259-4389278 | MS.gene052041:CDS | 20.0% |
| !!! | TGCTTTTGATTTTTTTATCA+TGG | - | chr2.2:4390579-4390598 | MS.gene052041:intron | 20.0% |
| !!! | TTATTATATAGCTTTTCACT+TGG | - | chr2.2:4390929-4390948 | MS.gene052041:CDS | 20.0% |
| !!! | TTCAAATTTTCATCAGAAAT+TGG | + | chr2.2:4389287-4389306 | None:intergenic | 20.0% |
| !!! | TTTGTTATAATATTGTTGCT+GGG | - | chr2.2:4389260-4389279 | MS.gene052041:CDS | 20.0% |
| ! | AACTCATATACTTACTGTAT+TGG | - | chr2.2:4390904-4390923 | MS.gene052041:CDS | 25.0% |
| ! | AATTGTAGATTCAGAATTCT+TGG | + | chr2.2:4392567-4392586 | None:intergenic | 25.0% |
| ! | ACTCATATACTTACTGTATT+GGG | - | chr2.2:4390905-4390924 | MS.gene052041:CDS | 25.0% |
| ! | AGATAACCTCATTTATGATA+TGG | - | chr2.2:4392454-4392473 | MS.gene052041:intron | 25.0% |
| ! | ATATAGTCAAATAATGGTAG+CGG | - | chr2.2:4391064-4391083 | MS.gene052041:intron | 25.0% |
| ! | ATCTTCAATATGAGAAAACT+TGG | - | chr2.2:4390445-4390464 | MS.gene052041:CDS | 25.0% |
| ! | ATTGACATAGTTAAATGCAA+TGG | - | chr2.2:4391584-4391603 | MS.gene052041:intron | 25.0% |
| ! | ATTGTAGTGAAAATGATAAG+TGG | + | chr2.2:4391926-4391945 | None:intergenic | 25.0% |
| ! | CAAAAATCTTAAATTCGTCA+GGG | - | chr2.2:4392606-4392625 | MS.gene052041:CDS | 25.0% |
| ! | CTGAATTAGAAGACATTATA+CGG | - | chr2.2:4391962-4391981 | MS.gene052041:intron | 25.0% |
| ! | GCAAAATGTTAGTAAATTAG+TGG | - | chr2.2:4389437-4389456 | MS.gene052041:intron | 25.0% |
| ! | GTTATGTTAATAGTCATTTG+GGG | - | chr2.2:4389481-4389500 | MS.gene052041:intron | 25.0% |
| ! | TAAGAAGGAATTTCTTTAAG+AGG | + | chr2.2:4392671-4392690 | None:intergenic | 25.0% |
| ! | TACATGGTAGATATAAACAA+TGG | - | chr2.2:4392051-4392070 | MS.gene052041:intron | 25.0% |
| ! | TACCATATATTCATTACAGA+AGG | + | chr2.2:4390881-4390900 | None:intergenic | 25.0% |
| ! | TTAATACACACATTCAAAGT+TGG | + | chr2.2:4390636-4390655 | None:intergenic | 25.0% |
| ! | TTAGTACTAAATACGTATCA+TGG | + | chr2.2:4391044-4391063 | None:intergenic | 25.0% |
| ! | TTATACTCAGTTTAACAACT+TGG | - | chr2.2:4391731-4391750 | MS.gene052041:intron | 25.0% |
| ! | TTCAAAACTAAAGAAGGATT+TGG | - | chr2.2:4392002-4392021 | MS.gene052041:intron | 25.0% |
| ! | TTCCTTCTGTAATGAATATA+TGG | - | chr2.2:4390876-4390895 | MS.gene052041:CDS | 25.0% |
| ! | TTGCAATTAGATGAAACATT+TGG | - | chr2.2:4390799-4390818 | MS.gene052041:CDS | 25.0% |
| ! | TTGTAGTGAAAATGATAAGT+GGG | + | chr2.2:4391925-4391944 | None:intergenic | 25.0% |
| ! | TTGTTATAATATTGTTGCTG+GGG | - | chr2.2:4389261-4389280 | MS.gene052041:CDS | 25.0% |
| ! | TTTCTTTATATCCGATTTAG+AGG | - | chr2.2:4390194-4390213 | MS.gene052041:intron | 25.0% |
| !! | ACAAAAGGTACATATATACA+TGG | - | chr2.2:4392035-4392054 | MS.gene052041:intron | 25.0% |
| !! | TTTCTTATTGTTGCTGTTAT+TGG | - | chr2.2:4389133-4389152 | MS.gene052041:CDS | 25.0% |
| !! | TTTGACTAAAAAAGACCTTT+TGG | - | chr2.2:4389563-4389582 | MS.gene052041:intron | 25.0% |
| !!! | ATCAACTTTGAAAAGCATTT+TGG | + | chr2.2:4389327-4389346 | None:intergenic | 25.0% |
| !!! | GAATTCGAGATCTTTTAAAA+TGG | - | chr2.2:4390235-4390254 | MS.gene052041:intron | 25.0% |
| !!! | TAATTTGTTTTACTCTCTAG+CGG | - | chr2.2:4391628-4391647 | MS.gene052041:intron | 25.0% |
| AATGCACCAATAGGTAATTT+AGG | - | chr2.2:4392074-4392093 | MS.gene052041:intron | 30.0% | |
| AATTAGAAGACATTATACGG+AGG | - | chr2.2:4391965-4391984 | MS.gene052041:intron | 30.0% | |
| ACAATAAGAAACCGATGAAT+AGG | + | chr2.2:4389124-4389143 | None:intergenic | 30.0% | |
| ACACTGAAGAAAATAATACC+TGG | + | chr2.2:4391343-4391362 | None:intergenic | 30.0% | |
| ACTATGACAACAACATTTCT+TGG | + | chr2.2:4389958-4389977 | None:intergenic | 30.0% | |
| ACTTATAGCATCCTCTAAAT+CGG | + | chr2.2:4390208-4390227 | None:intergenic | 30.0% | |
| ATTAAAAACACAAGGAAACC+AGG | + | chr2.2:4391664-4391683 | None:intergenic | 30.0% | |
| CTCATATACTTACTGTATTG+GGG | - | chr2.2:4390906-4390925 | MS.gene052041:CDS | 30.0% | |
| CTGATTGAATTTGTAGTGTT+TGG | + | chr2.2:4389786-4389805 | None:intergenic | 30.0% | |
| GCAAAAATCTTAAATTCGTC+AGG | - | chr2.2:4392605-4392624 | MS.gene052041:CDS | 30.0% | |
| GCATTAGATTTCTGATAAGA+AGG | + | chr2.2:4392686-4392705 | None:intergenic | 30.0% | |
| TATGCACCTAAATTACCTAT+TGG | + | chr2.2:4392083-4392102 | None:intergenic | 30.0% | |
| TCAAATAGTAGCTTGAGTTA+AGG | + | chr2.2:4389910-4389929 | None:intergenic | 30.0% | |
| TGTAGTGTTTGGCAAAATTA+GGG | + | chr2.2:4389775-4389794 | None:intergenic | 30.0% | |
| TTCTGCACAGTTATAAATTG+CGG | + | chr2.2:4390391-4390410 | None:intergenic | 30.0% | |
| TTGTAGTGTTTGGCAAAATT+AGG | + | chr2.2:4389776-4389795 | None:intergenic | 30.0% | |
| ! | AATTTCTTTAAGAGGACTAG+CGG | + | chr2.2:4392663-4392682 | None:intergenic | 30.0% |
| ! | TTGTTTCATCACTATTTTCC+AGG | - | chr2.2:4390663-4390682 | MS.gene052041:intron | 30.0% |
| !! | AGTGGTTATGTTAGTTTGTA+GGG | - | chr2.2:4389455-4389474 | MS.gene052041:intron | 30.0% |
| !! | AGTTTTTCAATAGACACGTT+AGG | + | chr2.2:4390982-4391001 | None:intergenic | 30.0% |
| !! | ATTGACTCACTTGTTATTGT+TGG | - | chr2.2:4392108-4392127 | MS.gene052041:intron | 30.0% |
| !! | CGAATTAAGTTTGTTGATTG+CGG | - | chr2.2:4390829-4390848 | MS.gene052041:CDS | 30.0% |
| !! | GACGAATTTAAGATTTTTGC+TGG | + | chr2.2:4392605-4392624 | None:intergenic | 30.0% |
| !! | TAGTGGTTATGTTAGTTTGT+AGG | - | chr2.2:4389454-4389473 | MS.gene052041:intron | 30.0% |
| AAAACAATTGTCACCTCGTA+AGG | - | chr2.2:4392724-4392743 | MS.gene052041:CDS | 35.0% | |
| AAACAATGGAATGCACCAAT+AGG | - | chr2.2:4392065-4392084 | MS.gene052041:intron | 35.0% | |
| ACAATGTGTATTGTTGGTGT+TGG | + | chr2.2:4390336-4390355 | None:intergenic | 35.0% | |
| ACTATCAGAATCAGAAGATG+AGG | + | chr2.2:4392495-4392514 | None:intergenic | 35.0% | |
| ATAAGAAACCGATGAATAGG+CGG | + | chr2.2:4389121-4389140 | None:intergenic | 35.0% | |
| ATGAGGTTATCTCTCATTTG+TGG | + | chr2.2:4392446-4392465 | None:intergenic | 35.0% | |
| ATTGAAACGAGACATGGTAA+TGG | + | chr2.2:4388902-4388921 | None:intergenic | 35.0% | |
| CACAGTTATAAATTGCGGAT+GGG | + | chr2.2:4390386-4390405 | None:intergenic | 35.0% | |
| CTATCAGAATCAGAAGATGA+GGG | + | chr2.2:4392494-4392513 | None:intergenic | 35.0% | |
| GGTTATCTGTCAAATGATAC+AGG | - | chr2.2:4391422-4391441 | MS.gene052041:intron | 35.0% | |
| GTAGATTCAGAATTCTTGGT+TGG | + | chr2.2:4392563-4392582 | None:intergenic | 35.0% | |
| GTAGTGTTTGGCAAAATTAG+GGG | + | chr2.2:4389774-4389793 | None:intergenic | 35.0% | |
| GTGTCATCGTTGAATGATAT+TGG | - | chr2.2:4391359-4391378 | MS.gene052041:intron | 35.0% | |
| TAAGAAATCCGTTGAGCTTA+GGG | - | chr2.2:4389201-4389220 | MS.gene052041:CDS | 35.0% | |
| TAGAGAAGGGTGACTTATAT+TGG | + | chr2.2:4391247-4391266 | None:intergenic | 35.0% | |
| TATACATACCCTAAGCTCAA+CGG | + | chr2.2:4389212-4389231 | None:intergenic | 35.0% | |
| TATCAACAAGTTATCCACCA+AGG | - | chr2.2:4390768-4390787 | MS.gene052041:intron | 35.0% | |
| TATCAGAATCAGAAGATGAG+GGG | + | chr2.2:4392493-4392512 | None:intergenic | 35.0% | |
| TCCAATTAAAGTCAAGACCA+TGG | + | chr2.2:4391522-4391541 | None:intergenic | 35.0% | |
| TGATGAACTTGCATTTGCTT+GGG | - | chr2.2:4389087-4389106 | MS.gene052041:CDS | 35.0% | |
| TGCTGTCCATATCATAAATG+AGG | + | chr2.2:4392463-4392482 | None:intergenic | 35.0% | |
| TTAAGAAATCCGTTGAGCTT+AGG | - | chr2.2:4389200-4389219 | MS.gene052041:CDS | 35.0% | |
| TTACAATCACCACGCAATTA+CGG | + | chr2.2:4390057-4390076 | None:intergenic | 35.0% | |
| TTGAGTTCATTACCACTCAT+TGG | + | chr2.2:4389983-4390002 | None:intergenic | 35.0% | |
| TTGTCATAGTAACCAATGAG+TGG | - | chr2.2:4389968-4389987 | MS.gene052041:intron | 35.0% | |
| ! | AAAGAAGGATTTGGTTGTTC+TGG | - | chr2.2:4392011-4392030 | MS.gene052041:intron | 35.0% |
| ! | AACCTGCAGTCAATTTTGAA+AGG | + | chr2.2:4392360-4392379 | None:intergenic | 35.0% |
| ! | AGCTAGCTTATAACTGATAG+CGG | + | chr2.2:4389818-4389837 | None:intergenic | 35.0% |
| ! | ATCTTTTTCCGCCTATTCAT+CGG | - | chr2.2:4389110-4389129 | MS.gene052041:CDS | 35.0% |
| ! | ATTGGCTTCGAAAATGAGAT+CGG | + | chr2.2:4388986-4389005 | None:intergenic | 35.0% |
| ! | ATTGGTCAGCTCTTTTATTG+TGG | + | chr2.2:4391808-4391827 | None:intergenic | 35.0% |
| ! | ATTTGGAATACTTGCAGAGA+AGG | + | chr2.2:4392411-4392430 | None:intergenic | 35.0% |
| ! | CAATGTGTATTGTTGGTGTT+GGG | + | chr2.2:4390335-4390354 | None:intergenic | 35.0% |
| ! | GTGAAAATGATAAGTGGGTT+AGG | + | chr2.2:4391920-4391939 | None:intergenic | 35.0% |
| ! | TACGAGGTGACAATTGTTTT+TGG | + | chr2.2:4392724-4392743 | None:intergenic | 35.0% |
| ! | TCCATGGTCTTGACTTTAAT+TGG | - | chr2.2:4391518-4391537 | MS.gene052041:intron | 35.0% |
| ! | TCTTGGTCTTCATTAGAGAA+GGG | + | chr2.2:4391260-4391279 | None:intergenic | 35.0% |
| ! | TGCATTTTATTCTCCAGAGT+TGG | - | chr2.2:4391869-4391888 | MS.gene052041:intron | 35.0% |
| !! | AATGATAAGTGGGTTAGGAA+AGG | + | chr2.2:4391915-4391934 | None:intergenic | 35.0% |
| !! | ACCTGCAGTCAATTTTGAAA+GGG | + | chr2.2:4392359-4392378 | None:intergenic | 35.0% |
| !! | ACTCATTGACTTTGTTAGCA+GGG | - | chr2.2:4391182-4391201 | MS.gene052041:intron | 35.0% |
| !! | ATGATAAGTGGGTTAGGAAA+GGG | + | chr2.2:4391914-4391933 | None:intergenic | 35.0% |
| !! | TTTGGTTGTTCTGGAACAAA+AGG | - | chr2.2:4392020-4392039 | MS.gene052041:intron | 35.0% |
| !!! | CTCTTTTTTAAGTCCTTACG+AGG | + | chr2.2:4392740-4392759 | None:intergenic | 35.0% |
| !!! | TTTTTTACCAAACAGAGCCT+TGG | - | chr2.2:4389880-4389899 | MS.gene052041:CDS | 35.0% |
| AACAAGTTATCCACCAAGGA+CGG | - | chr2.2:4390772-4390791 | MS.gene052041:intron | 40.0% | |
| AGAAAGTGACGGTTACCAAA+AGG | + | chr2.2:4389581-4389600 | None:intergenic | 40.0% | |
| AGAAGGGTGACTTATATTGG+AGG | + | chr2.2:4391244-4391263 | None:intergenic | 40.0% | |
| AGATCTTGTGCATTGTTGAC+AGG | + | chr2.2:4392521-4392540 | None:intergenic | 40.0% | |
| AGTAGAAGACGATCTCTCAA+TGG | - | chr2.2:4392758-4392777 | MS.gene052041:CDS | 40.0% | |
| ATAAATTGCGGATGGGATCA+CGG | + | chr2.2:4390379-4390398 | None:intergenic | 40.0% | |
| ATAAGCTCGTGAGAAAGTGA+CGG | + | chr2.2:4389592-4389611 | None:intergenic | 40.0% | |
| CAATCTGCTAAACTCTTCTG+AGG | - | chr2.2:4391824-4391843 | MS.gene052041:intron | 40.0% | |
| CTCAGAAGAGTTTAGCAGAT+TGG | + | chr2.2:4391826-4391845 | None:intergenic | 40.0% | |
| CTTCTCTAATGAAGACCAAG+AGG | - | chr2.2:4391259-4391278 | MS.gene052041:intron | 40.0% | |
| GAAGTTGCAATTTCCAACTC+TGG | + | chr2.2:4391885-4391904 | None:intergenic | 40.0% | |
| GCACAGTTATAAATTGCGGA+TGG | + | chr2.2:4390387-4390406 | None:intergenic | 40.0% | |
| GCTGTGACAATGTGTATTGT+TGG | + | chr2.2:4390342-4390361 | None:intergenic | 40.0% | |
| GGTTGAGCAAGTTTCTCAAT+GGG | - | chr2.2:4390466-4390485 | MS.gene052041:intron | 40.0% | |
| GTAATGGTGAAGTAGCGTTA+GGG | + | chr2.2:4388886-4388905 | None:intergenic | 40.0% | |
| GTGATGAACTTGCATTTGCT+TGG | - | chr2.2:4389086-4389105 | MS.gene052041:CDS | 40.0% | |
| TAATTGCAATTCTCCGTCCT+TGG | + | chr2.2:4390788-4390807 | None:intergenic | 40.0% | |
| TGCGAGTGCAAATAAGAGAT+GGG | - | chr2.2:4392790-4392809 | MS.gene052041:CDS | 40.0% | |
| TGGTTGAGCAAGTTTCTCAA+TGG | - | chr2.2:4390465-4390484 | MS.gene052041:intron | 40.0% | |
| TGTGGCAGCTGAATTTCATT+TGG | + | chr2.2:4392428-4392447 | None:intergenic | 40.0% | |
| ! | ATAGTCATTTGGGGTCTGTT+TGG | - | chr2.2:4389490-4389509 | MS.gene052041:intron | 40.0% |
| ! | CTCTTGGTCTTCATTAGAGA+AGG | + | chr2.2:4391261-4391280 | None:intergenic | 40.0% |
| ! | GATCTCATTTTCGAAGCCAA+TGG | - | chr2.2:4388985-4389004 | MS.gene052041:CDS | 40.0% |
| ! | GCTGATAAGCTAGCTTATAG+CGG | + | chr2.2:4389851-4389870 | None:intergenic | 40.0% |
| ! | GTTGGTAGAATGACATCAAC+AGG | + | chr2.2:4392545-4392564 | None:intergenic | 40.0% |
| !! | AGTTTGTTGATTGCGGTTGT+TGG | - | chr2.2:4390836-4390855 | MS.gene052041:CDS | 40.0% |
| !! | CACTCATTGACTTTGTTAGC+AGG | - | chr2.2:4391181-4391200 | MS.gene052041:intron | 40.0% |
| !! | TAGCGGATTGAAATTTCGAG+CGG | + | chr2.2:4392646-4392665 | None:intergenic | 40.0% |
| !! | TGATAAGTGGGTTAGGAAAG+GGG | + | chr2.2:4391913-4391932 | None:intergenic | 40.0% |
| !! | TTCTGAGGTTGCTAATAGCA+AGG | - | chr2.2:4391839-4391858 | MS.gene052041:intron | 40.0% |
| !!! | ATAGCTTTTCACTTGGTGCT+GGG | - | chr2.2:4390936-4390955 | MS.gene052041:CDS | 40.0% |
| !!! | TATAGCTTTTCACTTGGTGC+TGG | - | chr2.2:4390935-4390954 | MS.gene052041:CDS | 40.0% |
| ACACATTGTCACAGCCACAA+TGG | - | chr2.2:4390347-4390366 | MS.gene052041:CDS | 45.0% | |
| ACTGCAACTGTGCACTTAGT+AGG | + | chr2.2:4390007-4390026 | None:intergenic | 45.0% | |
| ATGGCCTGGATTAACCTTCA+AGG | - | chr2.2:4389004-4389023 | MS.gene052041:CDS | 45.0% | |
| CAAGACCATGGAATGCAAAC+AGG | + | chr2.2:4391510-4391529 | None:intergenic | 45.0% | |
| CAAGAGGAGAGAAGAATGTC+TGG | - | chr2.2:4391275-4391294 | MS.gene052041:intron | 45.0% | |
| CAGACATTCTTCTCTCCTCT+TGG | + | chr2.2:4391277-4391296 | None:intergenic | 45.0% | |
| CCACATCAACCACTTGCTTA+CGG | + | chr2.2:4390416-4390435 | None:intergenic | 45.0% | |
| CCTGGATTAACCTTCAAGGA+CGG | - | chr2.2:4389008-4389027 | MS.gene052041:CDS | 45.0% | |
| CTGGATTAACCTTCAAGGAC+GGG | - | chr2.2:4389009-4389028 | MS.gene052041:CDS | 45.0% | |
| GAGCAACACCTCAATGTAGT+GGG | - | chr2.2:4390091-4390110 | MS.gene052041:intron | 45.0% | |
| GCCCTTTCAAAATTGACTGC+AGG | - | chr2.2:4392355-4392374 | MS.gene052041:intron | 45.0% | |
| GCTTGAGTTAAGGAACACCA+AGG | + | chr2.2:4389900-4389919 | None:intergenic | 45.0% | |
| GGAATACTTGCAGAGAAGGA+TGG | + | chr2.2:4392407-4392426 | None:intergenic | 45.0% | |
| GGTGGAATTGAAACGAGACA+TGG | + | chr2.2:4388908-4388927 | None:intergenic | 45.0% | |
| GTGCGAGTGCAAATAAGAGA+TGG | - | chr2.2:4392789-4392808 | MS.gene052041:CDS | 45.0% | |
| TAAGAGGGACTGTGATGAGA+AGG | - | chr2.2:4391779-4391798 | MS.gene052041:intron | 45.0% | |
| TCAGCTGTTATCAAGCATGC+AGG | - | chr2.2:4390687-4390706 | MS.gene052041:intron | 45.0% | |
| TGAAGGTTAATCCAGGCCAT+TGG | + | chr2.2:4389004-4389023 | None:intergenic | 45.0% | |
| TGCAGGTTATGCAGCTTTCA+AGG | - | chr2.2:4392372-4392391 | MS.gene052041:intron | 45.0% | |
| TGCATCATTCCGTAATTGCG+TGG | - | chr2.2:4390045-4390064 | MS.gene052041:intron | 45.0% | |
| TGTAGCCTGTTTGCATTCCA+TGG | - | chr2.2:4391502-4391521 | MS.gene052041:intron | 45.0% | |
| TGTTCCAGTGTCGTCATTTG+CGG | + | chr2.2:4391143-4391162 | None:intergenic | 45.0% | |
| ! | AATGTCTGGCTTGTCGGATT+TGG | - | chr2.2:4391289-4391308 | MS.gene052041:intron | 45.0% |
| ! | CGTAAGCAAGTGGTTGATGT+GGG | - | chr2.2:4390414-4390433 | MS.gene052041:CDS | 45.0% |
| ! | GAGAAGAATGTCTGGCTTGT+CGG | - | chr2.2:4391283-4391302 | MS.gene052041:intron | 45.0% |
| ! | GGTAATGGTGAAGTAGCGTT+AGG | + | chr2.2:4388887-4388906 | None:intergenic | 45.0% |
| ! | TGCTTGATAACAGCTGATCC+TGG | + | chr2.2:4390684-4390703 | None:intergenic | 45.0% |
| !! | CACTACATTGAGGTGTTGCT+CGG | + | chr2.2:4390092-4390111 | None:intergenic | 45.0% |
| !! | TGAGGTGTTGCTCGGATATT+AGG | + | chr2.2:4390084-4390103 | None:intergenic | 45.0% |
| AAGAGCCTCCAGTGGAAATG+AGG | - | chr2.2:4391217-4391236 | MS.gene052041:intron | 50.0% | |
| ACTGGAGGCTCTTCTACTCA+AGG | + | chr2.2:4391210-4391229 | None:intergenic | 50.0% | |
| AGGAACACCAAGGCTCTGTT+TGG | + | chr2.2:4389890-4389909 | None:intergenic | 50.0% | |
| ATCAGAAGATGAGGGGCTAG+TGG | + | chr2.2:4392486-4392505 | None:intergenic | 50.0% | |
| CACATCTGCTGCTGATATCC+AGG | - | chr2.2:4391322-4391341 | MS.gene052041:intron | 50.0% | |
| CCATTGCACCCACTACATTG+AGG | + | chr2.2:4390102-4390121 | None:intergenic | 50.0% | |
| CCGTCCTTGAAGGTTAATCC+AGG | + | chr2.2:4389011-4389030 | None:intergenic | 50.0% | |
| CGAGCAACACCTCAATGTAG+TGG | - | chr2.2:4390090-4390109 | MS.gene052041:intron | 50.0% | |
| CGTTAACAACCCGTCCTTGA+AGG | + | chr2.2:4389021-4389040 | None:intergenic | 50.0% | |
| CTATCCGCAAATGACGACAC+TGG | - | chr2.2:4391136-4391155 | MS.gene052041:intron | 50.0% | |
| GATCACGGATATGGCCATTG+TGG | + | chr2.2:4390364-4390383 | None:intergenic | 50.0% | |
| TAACGCTGATGAAGCTAGCG+CGG | - | chr2.2:4389036-4389055 | MS.gene052041:CDS | 50.0% | |
| TGCAGAACACCGTAAGCAAG+TGG | - | chr2.2:4390404-4390423 | MS.gene052041:CDS | 50.0% | |
| TGCTGCTGCTCAGTCGAAAA+AGG | - | chr2.2:4389159-4389178 | MS.gene052041:CDS | 50.0% | |
| TGGGGTCTGTTTGGTAAGAC+AGG | - | chr2.2:4389499-4389518 | MS.gene052041:intron | 50.0% | |
| TTGAGTAGAAGAGCCTCCAG+TGG | - | chr2.2:4391209-4391228 | MS.gene052041:intron | 50.0% | |
| TTGCAATTCTCCGTCCTTGG+TGG | + | chr2.2:4390785-4390804 | None:intergenic | 50.0% | |
| TTGGAGGACCTCATTTCCAC+TGG | + | chr2.2:4391228-4391247 | None:intergenic | 50.0% | |
| ! | CATTTTCGAAGCCAATGGCC+TGG | - | chr2.2:4388990-4389009 | MS.gene052041:CDS | 50.0% |
| ! | CCGTAAGCAAGTGGTTGATG+TGG | - | chr2.2:4390413-4390432 | MS.gene052041:CDS | 50.0% |
| ! | TCTAGCGGTGCTTCTTTTCC+TGG | - | chr2.2:4391643-4391662 | MS.gene052041:intron | 50.0% |
| !! | CCTCAATGTAGTGGGTGCAA+TGG | - | chr2.2:4390099-4390118 | MS.gene052041:intron | 50.0% |
| GAAAATGAGATCGGACGCCG+CGG | + | chr2.2:4388977-4388996 | None:intergenic | 55.0% | |
| GAGGACCTCATTTCCACTGG+AGG | + | chr2.2:4391225-4391244 | None:intergenic | 55.0% | |
| GCAATGGACGCATTGCGCAT+CGG | - | chr2.2:4390115-4390134 | MS.gene052041:intron | 55.0% | |
| TGCGGATGGGATCACGGATA+TGG | + | chr2.2:4390373-4390392 | None:intergenic | 55.0% | |
| ! | CATTGCGCATCGGTCGCATT+AGG | - | chr2.2:4390125-4390144 | MS.gene052041:intron | 55.0% |
| !! | GCTAGAACTGTTGGTGGTGG+TGG | - | chr2.2:4389058-4389077 | MS.gene052041:CDS | 55.0% |
| AGCGCGGCTAGAACTGTTGG+TGG | - | chr2.2:4389052-4389071 | MS.gene052041:CDS | 60.0% | |
| GCTAGCGCGGCTAGAACTGT+TGG | - | chr2.2:4389049-4389068 | MS.gene052041:CDS | 60.0% | |
| ! | GCATCGGTCGCATTAGGCTG+TGG | - | chr2.2:4390131-4390150 | MS.gene052041:intron | 60.0% |
| ! | GCGGCTAGAACTGTTGGTGG+TGG | - | chr2.2:4389055-4389074 | MS.gene052041:CDS | 60.0% |
| CGACGGCGGGAGAGAGTGAT+TGG | + | chr2.2:4388929-4388948 | None:intergenic | 65.0% | |
| CGGCGGGAGAGAGTGATTGG+TGG | + | chr2.2:4388926-4388945 | None:intergenic | 65.0% | |
| TCGTCGTCTCTCCGCCGCAA+CGG | - | chr2.2:4388946-4388965 | MS.gene052041:CDS | 65.0% | |
| TTGCGGCGGAGAGACGACGA+CGG | + | chr2.2:4388946-4388965 | None:intergenic | 65.0% | |
| ACGCCGCGGCTCGACCGTTG+CGG | + | chr2.2:4388963-4388982 | None:intergenic | 75.0% | |
| CGGCGGAGAGACGACGACGG+CGG | + | chr2.2:4388943-4388962 | None:intergenic | 75.0% | |
| GGCGGAGAGACGACGACGGC+GGG | + | chr2.2:4388942-4388961 | None:intergenic | 75.0% | |
| ! | CCGCCGCAACGGTCGAGCCG+CGG | - | chr2.2:4388957-4388976 | MS.gene052041:CDS | 80.0% |
| ! | CCGCGGCTCGACCGTTGCGG+CGG | + | chr2.2:4388960-4388979 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.2 | gene | 4388863 | 4392817 | 4388863 | ID=MS.gene052041 |
| chr2.2 | mRNA | 4388863 | 4392817 | 4388863 | ID=MS.gene052041.t1;Parent=MS.gene052041 |
| chr2.2 | exon | 4392458 | 4392817 | 4392458 | ID=MS.gene052041.t1.exon1;Parent=MS.gene052041.t1 |
| chr2.2 | CDS | 4392458 | 4392817 | 4392458 | ID=cds.MS.gene052041.t1;Parent=MS.gene052041.t1 |
| chr2.2 | exon | 4390783 | 4390995 | 4390783 | ID=MS.gene052041.t1.exon2;Parent=MS.gene052041.t1 |
| chr2.2 | CDS | 4390783 | 4390995 | 4390783 | ID=cds.MS.gene052041.t1;Parent=MS.gene052041.t1 |
| chr2.2 | exon | 4390337 | 4390480 | 4390337 | ID=MS.gene052041.t1.exon3;Parent=MS.gene052041.t1 |
| chr2.2 | CDS | 4390337 | 4390480 | 4390337 | ID=cds.MS.gene052041.t1;Parent=MS.gene052041.t1 |
| chr2.2 | exon | 4389820 | 4389939 | 4389820 | ID=MS.gene052041.t1.exon4;Parent=MS.gene052041.t1 |
| chr2.2 | CDS | 4389820 | 4389939 | 4389820 | ID=cds.MS.gene052041.t1;Parent=MS.gene052041.t1 |
| chr2.2 | exon | 4389639 | 4389725 | 4389639 | ID=MS.gene052041.t1.exon5;Parent=MS.gene052041.t1 |
| chr2.2 | CDS | 4389639 | 4389725 | 4389639 | ID=cds.MS.gene052041.t1;Parent=MS.gene052041.t1 |
| chr2.2 | exon | 4388863 | 4389303 | 4388863 | ID=MS.gene052041.t1.exon6;Parent=MS.gene052041.t1 |
| chr2.2 | CDS | 4388863 | 4389303 | 4388863 | ID=cds.MS.gene052041.t1;Parent=MS.gene052041.t1 |
| Gene Sequence |
| Protein sequence |