Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57320.t1 | XP_013446774.1 | 96.6 | 792 | 27 | 0 | 1 | 792 | 44 | 835 | 0.00E+00 | 1419.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57320.t1 | Q6F353 | 73.2 | 799 | 195 | 5 | 1 | 792 | 44 | 830 | 0.0e+00 | 1125.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57320.t1 | A0A072TUF1 | 96.6 | 792 | 27 | 0 | 1 | 792 | 44 | 835 | 0.0e+00 | 1419.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049328 | MS.gene57320 | 0.817205 | 3.72E-52 | -1.69E-46 |
| MS.gene049397 | MS.gene57320 | 0.870263 | 1.66E-66 | -1.69E-46 |
| MS.gene049418 | MS.gene57320 | 0.816319 | 5.88E-52 | -1.69E-46 |
| MS.gene049596 | MS.gene57320 | 0.81589 | 7.33E-52 | -1.69E-46 |
| MS.gene049622 | MS.gene57320 | 0.807152 | 5.81E-50 | -1.69E-46 |
| MS.gene049660 | MS.gene57320 | 0.803119 | 4.06E-49 | -1.69E-46 |
| MS.gene04985 | MS.gene57320 | 0.861314 | 1.12E-63 | -1.69E-46 |
| MS.gene049989 | MS.gene57320 | 0.913465 | 5.97E-84 | -1.69E-46 |
| MS.gene050297 | MS.gene57320 | 0.913596 | 5.12E-84 | -1.69E-46 |
| MS.gene050310 | MS.gene57320 | 0.836058 | 1.17E-56 | -1.69E-46 |
| MS.gene050648 | MS.gene57320 | 0.88513 | 1.06E-71 | -1.69E-46 |
| MS.gene051067 | MS.gene57320 | 0.847325 | 1.24E-59 | -1.69E-46 |
| MS.gene051094 | MS.gene57320 | 0.837887 | 3.99E-57 | -1.69E-46 |
| MS.gene051263 | MS.gene57320 | 0.855586 | 5.71E-62 | -1.69E-46 |
| MS.gene051478 | MS.gene57320 | 0.848283 | 6.76E-60 | -1.69E-46 |
| MS.gene051629 | MS.gene57320 | 0.854481 | 1.20E-61 | -1.69E-46 |
| MS.gene051648 | MS.gene57320 | 0.804192 | 2.43E-49 | -1.69E-46 |
| MS.gene051671 | MS.gene57320 | 0.821239 | 4.49E-53 | -1.69E-46 |
| MS.gene051698 | MS.gene57320 | 0.820245 | 7.59E-53 | -1.69E-46 |
| MS.gene051742 | MS.gene57320 | 0.809978 | 1.45E-50 | -1.69E-46 |
| MS.gene052041 | MS.gene57320 | 0.807025 | 6.18E-50 | -1.69E-46 |
| MS.gene052367 | MS.gene57320 | 0.861099 | 1.30E-63 | -1.69E-46 |
| MS.gene052731 | MS.gene57320 | 0.815317 | 9.83E-52 | -1.69E-46 |
| MS.gene052732 | MS.gene57320 | 0.812281 | 4.59E-51 | -1.69E-46 |
| MS.gene053416 | MS.gene57320 | 0.877149 | 7.92E-69 | -1.69E-46 |
| MS.gene053417 | MS.gene57320 | 0.876834 | 1.02E-68 | -1.69E-46 |
| MS.gene05369 | MS.gene57320 | 0.827344 | 1.65E-54 | -1.69E-46 |
| MS.gene053929 | MS.gene57320 | 0.815559 | 8.69E-52 | -1.69E-46 |
| MS.gene054585 | MS.gene57320 | 0.802127 | 6.50E-49 | -1.69E-46 |
| MS.gene054643 | MS.gene57320 | 0.836329 | 9.97E-57 | -1.69E-46 |
| MS.gene055411 | MS.gene57320 | 0.816524 | 5.29E-52 | -1.69E-46 |
| MS.gene055537 | MS.gene57320 | 0.803194 | 3.92E-49 | -1.69E-46 |
| MS.gene055764 | MS.gene57320 | 0.825403 | 4.78E-54 | -1.69E-46 |
| MS.gene055781 | MS.gene57320 | 0.807 | 6.26E-50 | -1.69E-46 |
| MS.gene055957 | MS.gene57320 | 0.848546 | 5.72E-60 | -1.69E-46 |
| MS.gene056041 | MS.gene57320 | 0.829848 | 4.09E-55 | -1.69E-46 |
| MS.gene056169 | MS.gene57320 | 0.806511 | 7.94E-50 | -1.69E-46 |
| MS.gene056228 | MS.gene57320 | 0.831396 | 1.71E-55 | -1.69E-46 |
| MS.gene056335 | MS.gene57320 | 0.806997 | 6.27E-50 | -1.69E-46 |
| MS.gene056520 | MS.gene57320 | 0.822884 | 1.87E-53 | -1.69E-46 |
| MS.gene056526 | MS.gene57320 | 0.823598 | 1.27E-53 | -1.69E-46 |
| MS.gene057004 | MS.gene57320 | 0.827509 | 1.50E-54 | -1.69E-46 |
| MS.gene057483 | MS.gene57320 | 0.844403 | 7.73E-59 | -1.69E-46 |
| MS.gene058196 | MS.gene57320 | 0.847783 | 9.29E-60 | -1.69E-46 |
| MS.gene058197 | MS.gene57320 | 0.870111 | 1.87E-66 | -1.69E-46 |
| MS.gene058198 | MS.gene57320 | 0.871729 | 5.48E-67 | -1.69E-46 |
| MS.gene05870 | MS.gene57320 | 0.802232 | 6.19E-49 | -1.69E-46 |
| MS.gene058818 | MS.gene57320 | 0.861173 | 1.24E-63 | -1.69E-46 |
| MS.gene058844 | MS.gene57320 | 0.82513 | 5.54E-54 | -1.69E-46 |
| MS.gene059300 | MS.gene57320 | 0.893687 | 4.98E-75 | -1.69E-46 |
| MS.gene060473 | MS.gene57320 | 0.852558 | 4.27E-61 | -1.69E-46 |
| MS.gene060565 | MS.gene57320 | 0.852727 | 3.82E-61 | -1.69E-46 |
| MS.gene06057 | MS.gene57320 | 0.906134 | 2.05E-80 | -1.69E-46 |
| MS.gene061260 | MS.gene57320 | 0.869113 | 3.95E-66 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57320.t1 | MTR_8g090000 | 99.369 | 792 | 5 | 0 | 1 | 792 | 44 | 835 | 0.0 | 1630 |
| MS.gene57320.t1 | MTR_2g437540 | 76.280 | 801 | 144 | 5 | 1 | 789 | 45 | 811 | 0.0 | 1246 |
| MS.gene57320.t1 | MTR_4g071090 | 36.177 | 586 | 324 | 10 | 34 | 610 | 199 | 743 | 8.92e-116 | 370 |
| MS.gene57320.t1 | MTR_7g109480 | 37.963 | 540 | 283 | 9 | 76 | 609 | 145 | 638 | 3.47e-114 | 363 |
| MS.gene57320.t1 | MTR_4g116870 | 33.959 | 639 | 348 | 12 | 9 | 619 | 66 | 658 | 2.95e-101 | 329 |
| MS.gene57320.t1 | MTR_4g096700 | 32.421 | 694 | 356 | 15 | 37 | 670 | 67 | 707 | 4.04e-99 | 325 |
| MS.gene57320.t1 | MTR_4g122270 | 34.564 | 596 | 320 | 11 | 38 | 614 | 283 | 827 | 6.82e-97 | 322 |
| MS.gene57320.t1 | MTR_7g100680 | 31.313 | 594 | 318 | 13 | 76 | 610 | 143 | 705 | 4.85e-88 | 296 |
| MS.gene57320.t1 | MTR_2g009190 | 34.358 | 553 | 298 | 16 | 70 | 610 | 116 | 615 | 1.49e-79 | 269 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57320.t1 | AT5G44635 | 73.897 | 793 | 200 | 3 | 1 | 792 | 45 | 831 | 0.0 | 1224 |
| MS.gene57320.t1 | AT5G44635 | 71.673 | 819 | 199 | 4 | 1 | 792 | 45 | 857 | 0.0 | 1212 |
| MS.gene57320.t1 | AT4G02060 | 38.235 | 544 | 284 | 9 | 76 | 613 | 143 | 640 | 9.34e-116 | 367 |
| MS.gene57320.t1 | AT4G02060 | 38.235 | 544 | 284 | 9 | 76 | 613 | 143 | 640 | 9.34e-116 | 367 |
| MS.gene57320.t1 | AT2G16440 | 36.610 | 590 | 335 | 10 | 34 | 610 | 185 | 748 | 1.01e-115 | 370 |
| MS.gene57320.t1 | AT2G07690 | 36.655 | 562 | 295 | 9 | 76 | 619 | 134 | 652 | 2.66e-100 | 327 |
| MS.gene57320.t1 | AT5G46280 | 34.615 | 598 | 295 | 9 | 68 | 619 | 96 | 643 | 1.05e-99 | 324 |
| MS.gene57320.t1 | AT2G07690 | 36.823 | 554 | 289 | 9 | 84 | 619 | 140 | 650 | 3.24e-99 | 323 |
| MS.gene57320.t1 | AT5G46280 | 34.615 | 598 | 295 | 9 | 68 | 619 | 96 | 643 | 5.81e-99 | 324 |
| MS.gene57320.t1 | AT1G44900 | 33.760 | 625 | 342 | 12 | 11 | 614 | 258 | 831 | 9.91e-99 | 327 |
| MS.gene57320.t1 | AT1G44900 | 33.760 | 625 | 342 | 12 | 11 | 614 | 256 | 829 | 1.16e-98 | 327 |
| MS.gene57320.t1 | AT5G46280 | 34.752 | 564 | 272 | 8 | 77 | 594 | 105 | 618 | 3.09e-96 | 313 |
| MS.gene57320.t1 | AT3G09660 | 31.833 | 600 | 328 | 15 | 63 | 610 | 131 | 701 | 9.01e-91 | 302 |
| MS.gene57320.t1 | AT3G09660 | 32.161 | 597 | 327 | 15 | 63 | 610 | 131 | 698 | 1.09e-90 | 303 |
| MS.gene57320.t1 | AT3G09660 | 31.833 | 600 | 328 | 15 | 63 | 610 | 131 | 701 | 1.72e-90 | 302 |
| MS.gene57320.t1 | AT5G46280 | 35.078 | 516 | 239 | 8 | 77 | 546 | 105 | 570 | 3.66e-88 | 290 |
| MS.gene57320.t1 | AT2G14050 | 31.229 | 602 | 338 | 21 | 9 | 594 | 59 | 600 | 2.97e-73 | 252 |
| MS.gene57320.t1 | AT2G14050 | 31.229 | 602 | 338 | 21 | 9 | 594 | 59 | 600 | 3.90e-73 | 251 |
Find 176 sgRNAs with CRISPR-Local
Find 331 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCTATAATTGCTTTAATT+TGG | 0.072017 | 4.1:-10543200 | None:intergenic |
| ATACAAAACTCTCCAGTTTC+TGG | 0.160572 | 4.1:-10540784 | None:intergenic |
| TGTGAGGGGCCTTAGGGCTT+TGG | 0.214668 | 4.1:+10539826 | MS.gene57320:CDS |
| CTCTATAATTGCTTTAATTT+GGG | 0.252599 | 4.1:-10543199 | None:intergenic |
| CAACGCAAGGGTGCTTCATC+TGG | 0.270964 | 4.1:+10539794 | MS.gene57320:CDS |
| GTGAGGGGCCTTAGGGCTTT+GGG | 0.275142 | 4.1:+10539827 | MS.gene57320:CDS |
| AGCAACGGGATTTGATTAAA+TGG | 0.286323 | 4.1:+10543112 | MS.gene57320:CDS |
| CTCTCCAGTTTCTGGTTCCT+TGG | 0.319235 | 4.1:-10540776 | None:intergenic |
| TGCTGCAAACTTCTATAATA+AGG | 0.322371 | 4.1:+10542383 | MS.gene57320:CDS |
| GCAACGTTGATATCCTTGTT+AGG | 0.332960 | 4.1:-10538913 | None:intergenic |
| ATGAAGGTGTGAGGGGCCTT+AGG | 0.335308 | 4.1:+10539819 | MS.gene57320:CDS |
| CATGAAGGCATCAGCCTTAG+AGG | 0.337585 | 4.1:+10540534 | MS.gene57320:CDS |
| GACATAAACGTTTGTATTGT+TGG | 0.339761 | 4.1:+10540558 | MS.gene57320:CDS |
| TACTAATCAACAACATAATT+AGG | 0.340256 | 4.1:-10543429 | None:intergenic |
| CTCCATAACAAACCTCTTGC+AGG | 0.345294 | 4.1:-10538860 | None:intergenic |
| GTTAAAACCTTCTTGCATTA+CGG | 0.350902 | 4.1:-10542828 | None:intergenic |
| AATTGTCATACCTGATATAT+TGG | 0.355144 | 4.1:+10539724 | MS.gene57320:CDS |
| GACAATTGGAATGTTATAGA+AGG | 0.359993 | 4.1:-10538935 | None:intergenic |
| TGGTAATCTGTAACATCGTC+TGG | 0.365977 | 4.1:-10541877 | None:intergenic |
| TGAATATACCTCTTGACAAT+TGG | 0.372562 | 4.1:-10538949 | None:intergenic |
| AATCAGTAAATTTGCTCTCT+TGG | 0.374951 | 4.1:-10539453 | None:intergenic |
| TGGCTCTCTGCCTAGGTCAT+TGG | 0.375729 | 4.1:+10539519 | MS.gene57320:CDS |
| GGTAGGCTTGTATCTGTAAC+AGG | 0.380034 | 4.1:+10539143 | MS.gene57320:CDS |
| GGCAGTTGGAAGCTTTAATC+AGG | 0.381387 | 4.1:+10542199 | MS.gene57320:CDS |
| CTTGCCGCTGCCAACCCTGC+TGG | 0.383099 | 4.1:+10541669 | MS.gene57320:CDS |
| CCAGATGTATACACAGATCT+TGG | 0.385985 | 4.1:-10540715 | None:intergenic |
| ACAAGCTTGGTGAAGAAATC+TGG | 0.391646 | 4.1:-10540423 | None:intergenic |
| ATTGCAGGAAGTGGCTTAGC+TGG | 0.400192 | 4.1:+10543084 | MS.gene57320:intron |
| AAACGTTTATGTCCCCTCTA+AGG | 0.400315 | 4.1:-10540548 | None:intergenic |
| CAAGCAGCATCAGAAGCTGC+TGG | 0.400775 | 4.1:+10543354 | MS.gene57320:CDS |
| GTTGCCAAGGAACCAGAAAC+TGG | 0.401643 | 4.1:+10540772 | MS.gene57320:CDS |
| TTCCACCGGCTATACTTTCA+AGG | 0.402725 | 4.1:+10541824 | MS.gene57320:CDS |
| GGCCATTGCAAGGTGTCATC+TGG | 0.403603 | 4.1:+10542230 | MS.gene57320:CDS |
| TGCCTGCAAGAGGTTTGTTA+TGG | 0.403641 | 4.1:+10538858 | MS.gene57320:CDS |
| CTGTTGTTACATGTAGCATT+TGG | 0.405390 | 4.1:-10539409 | None:intergenic |
| GATTTAACAGGCTCAGGAAC+TGG | 0.406162 | 4.1:+10540374 | MS.gene57320:intron |
| CCAAGATCTGTGTATACATC+TGG | 0.406994 | 4.1:+10540715 | MS.gene57320:CDS |
| CCAAATTAAAGCAATTATAG+AGG | 0.410633 | 4.1:+10543200 | MS.gene57320:CDS |
| AAGAGAGCAAATTTACTGAT+TGG | 0.413990 | 4.1:+10539455 | MS.gene57320:CDS |
| TTGCAGGCATTCTGCAAGTA+AGG | 0.418482 | 4.1:-10538844 | None:intergenic |
| GAAGCCAACGCCAATATATC+AGG | 0.418612 | 4.1:-10539734 | None:intergenic |
| CTAGACACTTGAAAGTTCCT+TGG | 0.427198 | 4.1:-10539205 | None:intergenic |
| CGACATTCTGATCTCTCTCC+AGG | 0.428347 | 4.1:-10539758 | None:intergenic |
| GGAAAGTCATCATCTGCTGC+TGG | 0.432241 | 4.1:+10540736 | MS.gene57320:CDS |
| CAACGTTGATATCCTTGTTA+GGG | 0.439564 | 4.1:-10538912 | None:intergenic |
| AAGGTGTCATCTGGATAATC+AGG | 0.447002 | 4.1:+10542239 | MS.gene57320:CDS |
| AAGACGCATGACAAGGGCCT+TGG | 0.449057 | 4.1:-10542789 | None:intergenic |
| TGAAGGTGTGAGGGGCCTTA+GGG | 0.453292 | 4.1:+10539820 | MS.gene57320:CDS |
| AAAATCAATGAACATGGTGT+TGG | 0.455706 | 4.1:-10538652 | None:intergenic |
| TTGCATATCGGATGACAGTT+AGG | 0.457504 | 4.1:+10542178 | MS.gene57320:CDS |
| ATATTGGCGTTGGCTTCCCC+TGG | 0.469082 | 4.1:+10539740 | MS.gene57320:CDS |
| AGCTACACTTTCAACAAGCT+TGG | 0.470042 | 4.1:-10540436 | None:intergenic |
| GTAGCATTTGGACAAATTGT+TGG | 0.476872 | 4.1:-10539397 | None:intergenic |
| AAAGTTCCTTGGAGAAGCTC+AGG | 0.479407 | 4.1:-10539194 | None:intergenic |
| TTATCATACCGTCCTCCAGC+AGG | 0.479460 | 4.1:-10541684 | None:intergenic |
| CGTAGAGCTGATACAAATCC+TGG | 0.483403 | 4.1:+10542147 | MS.gene57320:CDS |
| TGAGTTTCAAGATCAAGATA+TGG | 0.484842 | 4.1:+10542520 | MS.gene57320:CDS |
| GAACATGTTATTACCTTCAG+TGG | 0.489503 | 4.1:-10541714 | None:intergenic |
| AGGGTTGGCAGCGGCAAGAA+TGG | 0.489803 | 4.1:-10541664 | None:intergenic |
| AGCTGGAAACTCTACTGCTC+AGG | 0.490744 | 4.1:+10542595 | MS.gene57320:CDS |
| CTATCTCTGATGAATATTTG+AGG | 0.491103 | 4.1:+10538712 | MS.gene57320:CDS |
| TCCTTCTTATGCTAATGAGT+GGG | 0.491510 | 4.1:+10540496 | MS.gene57320:CDS |
| TGGCTACATCAGAGATTGGT+AGG | 0.504042 | 4.1:+10539126 | MS.gene57320:CDS |
| TCAAGTGTCTAGAATGTGGT+GGG | 0.506639 | 4.1:+10539216 | MS.gene57320:CDS |
| GTAGAAGAGAAATAGACATC+AGG | 0.506918 | 4.1:+10539997 | MS.gene57320:CDS |
| CAAGATGGACATAAGAGATC+AGG | 0.507764 | 4.1:+10541484 | MS.gene57320:CDS |
| AACGATGCTGATGGTCAAGC+TGG | 0.508931 | 4.1:+10542578 | MS.gene57320:CDS |
| CTGATACAAATCCTGGCAGT+AGG | 0.511503 | 4.1:+10542154 | MS.gene57320:CDS |
| CTGGCAGTAGGGTTGCATAT+CGG | 0.513097 | 4.1:+10542166 | MS.gene57320:CDS |
| ATGAGATTGTAGAACATGCT+AGG | 0.515340 | 4.1:+10539557 | MS.gene57320:CDS |
| GTCAGCAAGCATCAAAGCGC+CGG | 0.518628 | 4.1:-10541432 | None:intergenic |
| CCCCACTCATTAGCATAAGA+AGG | 0.518823 | 4.1:-10540497 | None:intergenic |
| CAAGATATGGACGAAGAAGC+AGG | 0.521607 | 4.1:+10542533 | MS.gene57320:CDS |
| GTCAGATGCAAGAAAACTAC+TGG | 0.521796 | 4.1:+10542104 | MS.gene57320:CDS |
| TCCTCCAGCAGGGTTGGCAG+CGG | 0.522459 | 4.1:-10541673 | None:intergenic |
| ACTATTAGTATCACAAAAGC+AGG | 0.523615 | 4.1:+10541612 | MS.gene57320:CDS |
| CAAATTTACTGATTGGCAAA+GGG | 0.525128 | 4.1:+10539462 | MS.gene57320:CDS |
| TAATTACAGTTCCGTGGAGG+AGG | 0.526353 | 4.1:+10543161 | MS.gene57320:CDS |
| CTTAGCTGGGATGAAGCAAC+GGG | 0.528915 | 4.1:+10543098 | MS.gene57320:CDS |
| GCAAATTTACTGATTGGCAA+AGG | 0.529371 | 4.1:+10539461 | MS.gene57320:CDS |
| AGAGCCAGCAGGTATCTCAT+TGG | 0.529743 | 4.1:-10539503 | None:intergenic |
| CATACCTGATATATTGGCGT+TGG | 0.531733 | 4.1:+10539730 | MS.gene57320:CDS |
| GAATTGGCTACATCAGAGAT+TGG | 0.532287 | 4.1:+10539122 | MS.gene57320:CDS |
| CATTGATGAATTTGACAAGA+TGG | 0.532365 | 4.1:+10541469 | MS.gene57320:CDS |
| GGTTGCAATTCATGAGGCTA+TGG | 0.533064 | 4.1:+10541581 | MS.gene57320:intron |
| GGTGCTTCATCTGGGAATGA+AGG | 0.533732 | 4.1:+10539803 | MS.gene57320:CDS |
| ATCTGGGAATGAAGGTGTGA+GGG | 0.535862 | 4.1:+10539811 | MS.gene57320:CDS |
| TGCTAGAAATGATAGAACTT+TGG | 0.535930 | 4.1:+10543398 | MS.gene57320:CDS |
| GCTTTGATGCTTGCTGACAA+TGG | 0.535963 | 4.1:+10541437 | MS.gene57320:CDS |
| GAAAGTCATCATCTGCTGCT+GGG | 0.536220 | 4.1:+10540737 | MS.gene57320:CDS |
| CGATATGCAACCCTACTGCC+AGG | 0.536524 | 4.1:-10542165 | None:intergenic |
| TTGGCAAAGGGTCAGAATGC+AGG | 0.537253 | 4.1:+10539474 | MS.gene57320:CDS |
| GCCGCTGCCAACCCTGCTGG+AGG | 0.537734 | 4.1:+10541672 | MS.gene57320:CDS |
| TACCTGCTGGCTCTCTGCCT+AGG | 0.538550 | 4.1:+10539512 | MS.gene57320:CDS |
| CAGGAAGCCGCTGGAACCAA+TGG | 0.541233 | 4.1:+10542614 | MS.gene57320:CDS |
| CTCTGACTCCCAAAGCCCTA+AGG | 0.541676 | 4.1:-10539835 | None:intergenic |
| GTACAATGTGGCTCTTCCAC+CGG | 0.541952 | 4.1:+10541810 | MS.gene57320:intron |
| AACGCAAGGGTGCTTCATCT+GGG | 0.544757 | 4.1:+10539795 | MS.gene57320:CDS |
| AGACATCAGGAATAGAAAGA+AGG | 0.549012 | 4.1:+10540010 | MS.gene57320:CDS |
| TAGGGAAGCTTCTCAACGCA+AGG | 0.550312 | 4.1:+10539781 | MS.gene57320:CDS |
| ATGAAGGCATCAGCCTTAGA+GGG | 0.551495 | 4.1:+10540535 | MS.gene57320:CDS |
| CTGCCAACCCTGCTGGAGGA+CGG | 0.553709 | 4.1:+10541676 | MS.gene57320:CDS |
| TGGATGAAGTTCAAAGAATG+AGG | 0.554379 | 4.1:+10540394 | MS.gene57320:CDS |
| AGTTCTGCTGTAGTGAACGT+TGG | 0.559838 | 4.1:-10541952 | None:intergenic |
| TTCAACTTTCGCCTCCTCCA+CGG | 0.560026 | 4.1:-10543172 | None:intergenic |
| TGATCGTGATAGATGATGGC+AGG | 0.560237 | 4.1:+10543331 | MS.gene57320:CDS |
| GAGAGAGATCAGAATGTCGT+AGG | 0.562049 | 4.1:+10539762 | MS.gene57320:CDS |
| TTGCAGGAAGTGGCTTAGCT+GGG | 0.562532 | 4.1:+10543085 | MS.gene57320:intron |
| TCGGATGACAGTTAGGCAGT+TGG | 0.563427 | 4.1:+10542185 | MS.gene57320:CDS |
| CAGGATTTGTATCAGCTCTA+CGG | 0.565166 | 4.1:-10542146 | None:intergenic |
| AATTGAGACTTTGCACAGCT+AGG | 0.566095 | 4.1:-10540585 | None:intergenic |
| TTCTTTGTTTCAGTACAATG+TGG | 0.566629 | 4.1:+10541798 | MS.gene57320:intron |
| CATTTGATCGTGATAGATGA+TGG | 0.566869 | 4.1:+10543327 | MS.gene57320:CDS |
| ACTTGCAGAATGCCTGCAAG+AGG | 0.569621 | 4.1:+10538848 | MS.gene57320:CDS |
| TCAAACCTTGAAAGTATAGC+CGG | 0.573082 | 4.1:-10541829 | None:intergenic |
| GACCTAGGCAGAGAGCCAGC+AGG | 0.575423 | 4.1:-10539514 | None:intergenic |
| GGAAGCTTTAATCAGGCTGT+CGG | 0.576059 | 4.1:+10542206 | MS.gene57320:CDS |
| TAACTGATGAATACTTTCAA+AGG | 0.576649 | 4.1:+10542762 | MS.gene57320:CDS |
| GCTTAGCTGGGATGAAGCAA+CGG | 0.577228 | 4.1:+10543097 | MS.gene57320:CDS |
| ATACCGTCCTCCAGCAGGGT+TGG | 0.577304 | 4.1:-10541679 | None:intergenic |
| GGTTTGTTCCAGATTTGTGA+TGG | 0.579414 | 4.1:+10539975 | MS.gene57320:intron |
| AGAGAGATCAGAATGTCGTA+GGG | 0.583410 | 4.1:+10539763 | MS.gene57320:CDS |
| GACATTCTGATCTCTCTCCA+GGG | 0.583538 | 4.1:-10539757 | None:intergenic |
| TGATAAGTCTAAACCACTGA+AGG | 0.585685 | 4.1:+10541701 | MS.gene57320:CDS |
| ATAACATTCCAATTGTCAAG+AGG | 0.586980 | 4.1:+10538941 | MS.gene57320:CDS |
| CACCTCACCATTGGTTCCAG+CGG | 0.588414 | 4.1:-10542621 | None:intergenic |
| TAAAAGCAAGTCGGTAGGAG+AGG | 0.589366 | 4.1:-10539859 | None:intergenic |
| ACGTCCAATGAGATACCTGC+TGG | 0.590348 | 4.1:+10539499 | MS.gene57320:CDS |
| CCTTCTTATGCTAATGAGTG+GGG | 0.592758 | 4.1:+10540497 | MS.gene57320:CDS |
| ATGTAACAACAGAGCAAAGT+GGG | 0.595789 | 4.1:+10539420 | MS.gene57320:CDS |
| ATAACGAACCTGAACAGAGT+TGG | 0.596640 | 4.1:-10539885 | None:intergenic |
| TCTACTGCTCAGGAAGCCGC+TGG | 0.597751 | 4.1:+10542605 | MS.gene57320:CDS |
| CTGTAACAGGAGTGGTGACA+AGG | 0.599917 | 4.1:+10539156 | MS.gene57320:CDS |
| GGCTGTCGGAGGCCATTGCA+AGG | 0.600168 | 4.1:+10542220 | MS.gene57320:CDS |
| AAATGATAGAACTTTGGCTG+TGG | 0.600445 | 4.1:+10543404 | MS.gene57320:CDS |
| TGATACAAATCCTGGCAGTA+GGG | 0.600996 | 4.1:+10542155 | MS.gene57320:CDS |
| GTTCACAAATCTACTCATGA+AGG | 0.603800 | 4.1:+10540519 | MS.gene57320:CDS |
| TGAGATTGTAGAACATGCTA+GGG | 0.603809 | 4.1:+10539558 | MS.gene57320:CDS |
| GTTCGACCTGAGCTTCTCCA+AGG | 0.607207 | 4.1:+10539188 | MS.gene57320:CDS |
| CATCTGGGAATGAAGGTGTG+AGG | 0.608451 | 4.1:+10539810 | MS.gene57320:CDS |
| ATCCAGATGACACCTTGCAA+TGG | 0.610507 | 4.1:-10542232 | None:intergenic |
| ATTGTAGAACATGCTAGGGC+TGG | 0.615899 | 4.1:+10539562 | MS.gene57320:CDS |
| TTCAAGTGTCTAGAATGTGG+TGG | 0.616955 | 4.1:+10539215 | MS.gene57320:CDS |
| GCTGTCTAAGACGCATGACA+AGG | 0.617928 | 4.1:-10542796 | None:intergenic |
| AGCTTTAATCAGGCTGTCGG+AGG | 0.618052 | 4.1:+10542209 | MS.gene57320:CDS |
| ATCCTTCTTATGCTAATGAG+TGG | 0.618694 | 4.1:+10540495 | MS.gene57320:CDS |
| ATTGAAGGTTGCAATTCATG+AGG | 0.621895 | 4.1:+10541575 | MS.gene57320:intron |
| GTTGACTGCAACTGTTGCCA+AGG | 0.630299 | 4.1:+10540759 | MS.gene57320:CDS |
| GGTAATCTGTAACATCGTCT+GGG | 0.631041 | 4.1:-10541876 | None:intergenic |
| GGCAATAAAAGCAAGTCGGT+AGG | 0.631539 | 4.1:-10539864 | None:intergenic |
| GAGGAGACCGTAATGCAAGA+AGG | 0.631602 | 4.1:+10542821 | MS.gene57320:CDS |
| AATGATAATAACGATGCTGA+TGG | 0.632424 | 4.1:+10542569 | MS.gene57320:CDS |
| AGAATAACATCCAATGACCT+AGG | 0.632771 | 4.1:-10539529 | None:intergenic |
| ACTGCTAAACGAACATGACG+AGG | 0.634306 | 4.1:-10542355 | None:intergenic |
| CAAGTGTCTAGAATGTGGTG+GGG | 0.638582 | 4.1:+10539217 | MS.gene57320:CDS |
| GAAGAAGCAGGTAGTGACGA+TGG | 0.642853 | 4.1:+10542545 | MS.gene57320:CDS |
| TCTGGGAATGAAGGTGTGAG+GGG | 0.644966 | 4.1:+10539812 | MS.gene57320:CDS |
| CTGTCTAAGACGCATGACAA+GGG | 0.646104 | 4.1:-10542795 | None:intergenic |
| ATGTTCAAAATCAATGAACA+TGG | 0.646880 | 4.1:-10538658 | None:intergenic |
| TTATCATCAGAAATGAATGT+CGG | 0.648409 | 4.1:-10538889 | None:intergenic |
| AACCTTGAAAGTATAGCCGG+TGG | 0.648631 | 4.1:-10541826 | None:intergenic |
| AGGGAAGCTTCTCAACGCAA+GGG | 0.651545 | 4.1:+10539782 | MS.gene57320:CDS |
| ACTTTCAAGTGTCTAGAATG+TGG | 0.654394 | 4.1:+10539212 | MS.gene57320:CDS |
| TATCATACCGTCCTCCAGCA+GGG | 0.656611 | 4.1:-10541683 | None:intergenic |
| GCACAATATGAGAAGCTATG+TGG | 0.660506 | 4.1:-10541897 | None:intergenic |
| TTCTGATGATAACCCTAACA+AGG | 0.660674 | 4.1:+10538900 | MS.gene57320:CDS |
| GCTTGTATCTGTAACAGGAG+TGG | 0.662884 | 4.1:+10539148 | MS.gene57320:CDS |
| TGAAGGCATCAGCCTTAGAG+GGG | 0.664188 | 4.1:+10540536 | MS.gene57320:CDS |
| AGTGGTGACAAGGACAAGTG+AGG | 0.666415 | 4.1:+10539166 | MS.gene57320:CDS |
| CATGCGTCTTAGACAGCACG+AGG | 0.667096 | 4.1:+10542802 | MS.gene57320:CDS |
| CATGTAACAACAGAGCAAAG+TGG | 0.668775 | 4.1:+10539419 | MS.gene57320:CDS |
| AGTTGGCAATAAAAGCAAGT+CGG | 0.673960 | 4.1:-10539868 | None:intergenic |
| ACATTCTGATCTCTCTCCAG+GGG | 0.682522 | 4.1:-10539756 | None:intergenic |
| AAATAATTACAGTTCCGTGG+AGG | 0.693918 | 4.1:+10543158 | MS.gene57320:CDS |
| ACAGCAATTCAAGTATACTG+AGG | 0.742350 | 4.1:+10539256 | MS.gene57320:CDS |
| ATACTTTCAAAGGATCACCA+AGG | 0.772896 | 4.1:+10542772 | MS.gene57320:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGAAATTAGTATATTTAT+TGG | + | chr4.1:10543248-10543267 | MS.gene57320:intron | 10.0% |
| !!! | TTAAATTCTAAAATTTATTC+AGG | + | chr4.1:10542929-10542948 | MS.gene57320:intron | 10.0% |
| !!! | TTGTTTTAAATTTCTATTTT+GGG | + | chr4.1:10542424-10542443 | MS.gene57320:intron | 10.0% |
| !!! | TTTGTTTTAAATTTCTATTT+TGG | + | chr4.1:10542423-10542442 | MS.gene57320:intron | 10.0% |
| !! | AAATATACTAATTTCTTTGA+AGG | - | chr4.1:10543246-10543265 | None:intergenic | 15.0% |
| !! | AATAGATTGATAAATATTAG+GGG | - | chr4.1:10540236-10540255 | None:intergenic | 15.0% |
| !! | AATTTCAATAAAAATCCAAT+TGG | - | chr4.1:10538748-10538767 | None:intergenic | 15.0% |
| !! | CAAAATAATACCAAATTATA+GGG | - | chr4.1:10538778-10538797 | None:intergenic | 15.0% |
| !! | CAATAGATTGATAAATATTA+GGG | - | chr4.1:10540237-10540256 | None:intergenic | 15.0% |
| !! | GTCTTAAATTATGAATAATA+CGG | + | chr4.1:10539315-10539334 | MS.gene57320:intron | 15.0% |
| !! | TTGTTTATATAAAACAATGT+CGG | + | chr4.1:10542995-10543014 | MS.gene57320:intron | 15.0% |
| !! | TTTATATAAACAAATCTCAA+AGG | - | chr4.1:10542988-10543007 | None:intergenic | 15.0% |
| !!! | CTATAATTTGGTATTATTTT+GGG | + | chr4.1:10538777-10538796 | MS.gene57320:intron | 15.0% |
| !!! | TTATTCATAATTTAAGACTA+CGG | - | chr4.1:10539313-10539332 | None:intergenic | 15.0% |
| !!! | TTTTATGCTATACTTTATAT+CGG | - | chr4.1:10541256-10541275 | None:intergenic | 15.0% |
| !! | AATGTAAACTTTATGGAATT+TGG | + | chr4.1:10539641-10539660 | MS.gene57320:intron | 20.0% |
| !! | ATAGATTGATAAATATTAGG+GGG | - | chr4.1:10540235-10540254 | None:intergenic | 20.0% |
| !! | ATTTGATAAAGCACAATAAT+AGG | + | chr4.1:10541042-10541061 | MS.gene57320:intron | 20.0% |
| !! | CCAAAATAATACCAAATTAT+AGG | - | chr4.1:10538779-10538798 | None:intergenic | 20.0% |
| !! | GATAAAATTTACTTATTCAC+TGG | + | chr4.1:10542678-10542697 | MS.gene57320:intron | 20.0% |
| !! | GCAATAGATTGATAAATATT+AGG | - | chr4.1:10540238-10540257 | None:intergenic | 20.0% |
| !!! | AATTATTTTTCTCATTTTGC+TGG | - | chr4.1:10543146-10543165 | None:intergenic | 20.0% |
| !!! | CCTATAATTTGGTATTATTT+TGG | + | chr4.1:10538776-10538795 | MS.gene57320:intron | 20.0% |
| !!! | CTCTATAATTGCTTTAATTT+GGG | - | chr4.1:10543202-10543221 | None:intergenic | 20.0% |
| !!! | GTATTTTAATTTGCAAATTG+AGG | + | chr4.1:10539016-10539035 | MS.gene57320:intron | 20.0% |
| !!! | TACAGTAGATTTTTTTCTTT+GGG | - | chr4.1:10542744-10542763 | None:intergenic | 20.0% |
| !!! | TATTCATAATTTAAGACTAC+GGG | - | chr4.1:10539312-10539331 | None:intergenic | 20.0% |
| !!! | TGATAAATATGTTTTCTGTA+TGG | + | chr4.1:10539954-10539973 | MS.gene57320:intron | 20.0% |
| !!! | TTACAGTAGATTTTTTTCTT+TGG | - | chr4.1:10542745-10542764 | None:intergenic | 20.0% |
| ! | AAAGAAAAATGAACAGGTTA+AGG | - | chr4.1:10540264-10540283 | None:intergenic | 25.0% |
| ! | AAAGATGAATTCAAAACAAG+TGG | + | chr4.1:10541320-10541339 | MS.gene57320:intron | 25.0% |
| ! | AAGATGAATTCAAAACAAGT+GGG | + | chr4.1:10541321-10541340 | MS.gene57320:intron | 25.0% |
| ! | AATGTGAACTCAAAATCAAA+CGG | - | chr4.1:10540102-10540121 | None:intergenic | 25.0% |
| ! | AATTGTCATACCTGATATAT+TGG | + | chr4.1:10539724-10539743 | MS.gene57320:CDS | 25.0% |
| ! | AATTTAAATTTGCCAAACCA+AGG | - | chr4.1:10540959-10540978 | None:intergenic | 25.0% |
| ! | ATGTTCAAAATCAATGAACA+TGG | - | chr4.1:10538661-10538680 | None:intergenic | 25.0% |
| ! | ATTACTGAAACCCTATAATT+TGG | + | chr4.1:10538765-10538784 | MS.gene57320:intron | 25.0% |
| ! | ATTGTACTGAAACAAAGAAA+GGG | - | chr4.1:10541797-10541816 | None:intergenic | 25.0% |
| ! | CAATAAGGTAATTAATAACC+AGG | - | chr4.1:10541746-10541765 | None:intergenic | 25.0% |
| ! | CCAAATTAAAGCAATTATAG+AGG | + | chr4.1:10543200-10543219 | MS.gene57320:CDS | 25.0% |
| ! | CCTCTATAATTGCTTTAATT+TGG | - | chr4.1:10543203-10543222 | None:intergenic | 25.0% |
| ! | GTAATCAAAGAAAAAGAGAA+AGG | - | chr4.1:10540624-10540643 | None:intergenic | 25.0% |
| ! | GTACTGAAATGTAAACTTTA+TGG | + | chr4.1:10539634-10539653 | MS.gene57320:intron | 25.0% |
| ! | GTTAAGAATTAAGTTAGAGT+AGG | + | chr4.1:10541138-10541157 | MS.gene57320:intron | 25.0% |
| ! | TAACGAAATGAAAACGAAAT+TGG | - | chr4.1:10538983-10539002 | None:intergenic | 25.0% |
| ! | TAACTGATGAATACTTTCAA+AGG | + | chr4.1:10542762-10542781 | MS.gene57320:CDS | 25.0% |
| ! | TAAGTAAGAAAGAAGCAAAA+AGG | - | chr4.1:10542064-10542083 | None:intergenic | 25.0% |
| ! | TGTGTTAAAGAAAAATGAAC+AGG | - | chr4.1:10540270-10540289 | None:intergenic | 25.0% |
| ! | TTACCTTATTGAGTTTAACT+TGG | + | chr4.1:10541755-10541774 | MS.gene57320:intron | 25.0% |
| ! | TTATCATCAGAAATGAATGT+CGG | - | chr4.1:10538892-10538911 | None:intergenic | 25.0% |
| ! | TTGAAAAGTTAAAGCAGATT+CGG | - | chr4.1:10539611-10539630 | None:intergenic | 25.0% |
| ! | TTTATCAAACATGAATTGAG+AGG | + | chr4.1:10541280-10541299 | MS.gene57320:intron | 25.0% |
| !! | ATTGAAAGTTGAATTTTCTG+TGG | + | chr4.1:10543053-10543072 | MS.gene57320:intron | 25.0% |
| !! | CGATTTTCTGATTTTATAAC+AGG | + | chr4.1:10542327-10542346 | MS.gene57320:intron | 25.0% |
| !! | TCCTAATTATGTTGTTGATT+AGG | + | chr4.1:10543428-10543447 | MS.gene57320:CDS | 25.0% |
| !! | TTGAAAGTTGAATTTTCTGT+GGG | + | chr4.1:10543054-10543073 | MS.gene57320:intron | 25.0% |
| !!! | ACAGTAGATTTTTTTCTTTG+GGG | - | chr4.1:10542743-10542762 | None:intergenic | 25.0% |
| !!! | ATTTTTTTACTGGCATTTGA+GGG | + | chr4.1:10541519-10541538 | MS.gene57320:intron | 25.0% |
| !!! | GAAAGTATCTCATATTTGAT+TGG | + | chr4.1:10541552-10541571 | MS.gene57320:intron | 25.0% |
| !!! | GGCTTTAATCTACATATTTT+AGG | + | chr4.1:10540187-10540206 | MS.gene57320:intron | 25.0% |
| !!! | TAGATTTTAATTCGAAGAGA+GGG | + | chr4.1:10543303-10543322 | MS.gene57320:intron | 25.0% |
| !!! | TGAGGTATTTTTTTTCCAAT+TGG | + | chr4.1:10538730-10538749 | MS.gene57320:intron | 25.0% |
| !!! | TTATGTAAGAACTTGTTTTC+AGG | + | chr4.1:10541409-10541428 | MS.gene57320:intron | 25.0% |
| !!! | TTGAACACTGCTTTTTATTT+TGG | + | chr4.1:10542017-10542036 | MS.gene57320:intron | 25.0% |
| !!! | TTGGTTTGGCAAATTTAAAT+TGG | + | chr4.1:10540958-10540977 | MS.gene57320:intron | 25.0% |
| AAAATCAATGAACATGGTGT+TGG | - | chr4.1:10538655-10538674 | None:intergenic | 30.0% | |
| AAATATTAGGGGGAAATAAC+AGG | - | chr4.1:10540225-10540244 | None:intergenic | 30.0% | |
| AAGAGAGCAAATTTACTGAT+TGG | + | chr4.1:10539455-10539474 | MS.gene57320:CDS | 30.0% | |
| AATATTAGGGGGAAATAACA+GGG | - | chr4.1:10540224-10540243 | None:intergenic | 30.0% | |
| AATGATAATAACGATGCTGA+TGG | + | chr4.1:10542569-10542588 | MS.gene57320:CDS | 30.0% | |
| ACTATTAGTATCACAAAAGC+AGG | + | chr4.1:10541612-10541631 | MS.gene57320:CDS | 30.0% | |
| ATAACATTCCAATTGTCAAG+AGG | + | chr4.1:10538941-10538960 | MS.gene57320:CDS | 30.0% | |
| CAACTTTCAATATGATCACA+TGG | - | chr4.1:10543044-10543063 | None:intergenic | 30.0% | |
| CATTGATGAATTTGACAAGA+TGG | + | chr4.1:10541469-10541488 | MS.gene57320:CDS | 30.0% | |
| CATTGTACTGAAACAAAGAA+AGG | - | chr4.1:10541798-10541817 | None:intergenic | 30.0% | |
| CTATCTCTGATGAATATTTG+AGG | + | chr4.1:10538712-10538731 | MS.gene57320:CDS | 30.0% | |
| CTCATATTTGATTGGATTGA+AGG | + | chr4.1:10541560-10541579 | MS.gene57320:intron | 30.0% | |
| GAAAAATAATTACAGTTCCG+TGG | + | chr4.1:10543155-10543174 | MS.gene57320:CDS | 30.0% | |
| GAAAGGGCAAAAACTAAATT+AGG | - | chr4.1:10541781-10541800 | None:intergenic | 30.0% | |
| GACAATTGGAATGTTATAGA+AGG | - | chr4.1:10538938-10538957 | None:intergenic | 30.0% | |
| GACATAAACGTTTGTATTGT+TGG | + | chr4.1:10540558-10540577 | MS.gene57320:CDS | 30.0% | |
| GCAAACTTCTATAATAAGGT+AGG | + | chr4.1:10542387-10542406 | MS.gene57320:intron | 30.0% | |
| GTTAAAACCTTCTTGCATTA+CGG | - | chr4.1:10542831-10542850 | None:intergenic | 30.0% | |
| TCAAGCACTTTATCATTATC+TGG | + | chr4.1:10541355-10541374 | MS.gene57320:intron | 30.0% | |
| TCATGTATGGTTATCATTTC+AGG | + | chr4.1:10540674-10540693 | MS.gene57320:intron | 30.0% | |
| TGAAAAGTTAAAGCAGATTC+GGG | - | chr4.1:10539610-10539629 | None:intergenic | 30.0% | |
| TGAATATACCTCTTGACAAT+TGG | - | chr4.1:10538952-10538971 | None:intergenic | 30.0% | |
| TGAGTTTCAAGATCAAGATA+TGG | + | chr4.1:10542520-10542539 | MS.gene57320:CDS | 30.0% | |
| TGCAAAAACTCTTAAACCAA+AGG | + | chr4.1:10541993-10542012 | MS.gene57320:CDS | 30.0% | |
| TGCTAGAAATGATAGAACTT+TGG | + | chr4.1:10543398-10543417 | MS.gene57320:CDS | 30.0% | |
| TGCTGCAAACTTCTATAATA+AGG | + | chr4.1:10542383-10542402 | MS.gene57320:CDS | 30.0% | |
| TTCATTTGTGTTTGTATCCT+TGG | + | chr4.1:10540939-10540958 | MS.gene57320:intron | 30.0% | |
| TTCTTTGATTACTTTCATGC+TGG | + | chr4.1:10540632-10540651 | MS.gene57320:intron | 30.0% | |
| ! | AATAGGATTAGAGTTGCTTT+AGG | + | chr4.1:10541059-10541078 | MS.gene57320:intron | 30.0% |
| ! | AATCAGTAAATTTGCTCTCT+TGG | - | chr4.1:10539456-10539475 | None:intergenic | 30.0% |
| ! | AGTTGAATCTGGTTTAAACT+AGG | - | chr4.1:10541000-10541019 | None:intergenic | 30.0% |
| ! | ATTACAACTCGCAAACATTT+TGG | - | chr4.1:10541213-10541232 | None:intergenic | 30.0% |
| ! | ATTTGACTGGTTGATTTAAC+AGG | + | chr4.1:10540362-10540381 | MS.gene57320:intron | 30.0% |
| ! | CAAATTTACTGATTGGCAAA+GGG | + | chr4.1:10539462-10539481 | MS.gene57320:CDS | 30.0% |
| ! | CAGGTGTTTAATGATTTTAG+AGG | + | chr4.1:10542258-10542277 | MS.gene57320:intron | 30.0% |
| ! | TAATTTGCAAATTGAGGCTT+TGG | + | chr4.1:10539022-10539041 | MS.gene57320:intron | 30.0% |
| ! | TCTTGATGACCAAAAATAGT+TGG | - | chr4.1:10540462-10540481 | None:intergenic | 30.0% |
| ! | TGGTTTAAGAGTTTTTGCAT+AGG | - | chr4.1:10541992-10542011 | None:intergenic | 30.0% |
| ! | TTAGGTTTAAAATTACTGCC+TGG | + | chr4.1:10541077-10541096 | MS.gene57320:intron | 30.0% |
| ! | TTCTTTGTTTCAGTACAATG+TGG | + | chr4.1:10541798-10541817 | MS.gene57320:intron | 30.0% |
| ! | TTGTATATGTTTTCCTTAGC+TGG | + | chr4.1:10542296-10542315 | MS.gene57320:intron | 30.0% |
| ! | TTTTTATAGGCTAAGGGAAT+TGG | + | chr4.1:10539106-10539125 | MS.gene57320:intron | 30.0% |
| !! | ACTTTATATCGGTTTCTGAA+TGG | - | chr4.1:10541245-10541264 | None:intergenic | 30.0% |
| !! | TCGATGTTTTTATAGGCTAA+GGG | + | chr4.1:10539100-10539119 | MS.gene57320:intron | 30.0% |
| !! | TCTGTGTTCGATGTTTTTAT+AGG | + | chr4.1:10539093-10539112 | MS.gene57320:intron | 30.0% |
| !! | TGTTTAATGATTTTAGAGGC+TGG | + | chr4.1:10542262-10542281 | MS.gene57320:intron | 30.0% |
| !! | TTCGATGTTTTTATAGGCTA+AGG | + | chr4.1:10539099-10539118 | MS.gene57320:intron | 30.0% |
| !! | TTTGTGTTGTTGTTGATGAT+AGG | + | chr4.1:10538815-10538834 | MS.gene57320:intron | 30.0% |
| !!! | AGATTTTAATTCGAAGAGAG+GGG | + | chr4.1:10543304-10543323 | MS.gene57320:intron | 30.0% |
| !!! | CAGTAGATTTTTTTCTTTGG+GGG | - | chr4.1:10542742-10542761 | None:intergenic | 30.0% |
| !!! | CATTTTTTTACTGGCATTTG+AGG | + | chr4.1:10541518-10541537 | MS.gene57320:intron | 30.0% |
| !!! | GTAGATTTTAATTCGAAGAG+AGG | + | chr4.1:10543302-10543321 | MS.gene57320:intron | 30.0% |
| !!! | TCATTGATTCACTATTTTCC+AGG | - | chr4.1:10541098-10541117 | None:intergenic | 30.0% |
| AAAAGCAGTGTTCAAACCTT+TGG | - | chr4.1:10542012-10542031 | None:intergenic | 35.0% | |
| AAATAATTACAGTTCCGTGG+AGG | + | chr4.1:10543158-10543177 | MS.gene57320:CDS | 35.0% | |
| AAATGATAGAACTTTGGCTG+TGG | + | chr4.1:10543404-10543423 | MS.gene57320:CDS | 35.0% | |
| AATAACATGTTCTGCTAACC+TGG | + | chr4.1:10541725-10541744 | MS.gene57320:intron | 35.0% | |
| AATGCTTAGTTCAGAATCCA+TGG | - | chr4.1:10541190-10541209 | None:intergenic | 35.0% | |
| AATTCATCTTTACCGAACTC+AGG | - | chr4.1:10541311-10541330 | None:intergenic | 35.0% | |
| ACAGCAATTCAAGTATACTG+AGG | + | chr4.1:10539256-10539275 | MS.gene57320:CDS | 35.0% | |
| ACAGTAGAACTAGTTGAATC+TGG | - | chr4.1:10541011-10541030 | None:intergenic | 35.0% | |
| AGAATAACATCCAATGACCT+AGG | - | chr4.1:10539532-10539551 | None:intergenic | 35.0% | |
| AGACATCAGGAATAGAAAGA+AGG | + | chr4.1:10540010-10540029 | MS.gene57320:CDS | 35.0% | |
| AGACGATTGCAAGGTAAAAT+GGG | - | chr4.1:10542654-10542673 | None:intergenic | 35.0% | |
| AGCAACGGGATTTGATTAAA+TGG | + | chr4.1:10543112-10543131 | MS.gene57320:CDS | 35.0% | |
| AGGCCAAGTTAAACTCAATA+AGG | - | chr4.1:10541761-10541780 | None:intergenic | 35.0% | |
| AGTTGGCAATAAAAGCAAGT+CGG | - | chr4.1:10539871-10539890 | None:intergenic | 35.0% | |
| ATACAAAACTCTCCAGTTTC+TGG | - | chr4.1:10540787-10540806 | None:intergenic | 35.0% | |
| ATACTTTCAAAGGATCACCA+AGG | + | chr4.1:10542772-10542791 | MS.gene57320:CDS | 35.0% | |
| ATCCTTCTTATGCTAATGAG+TGG | + | chr4.1:10540495-10540514 | MS.gene57320:CDS | 35.0% | |
| ATCTGCAATTCACTGTAAGT+TGG | + | chr4.1:10540048-10540067 | MS.gene57320:intron | 35.0% | |
| ATGAGATTGTAGAACATGCT+AGG | + | chr4.1:10539557-10539576 | MS.gene57320:CDS | 35.0% | |
| ATGTAACAACAGAGCAAAGT+GGG | + | chr4.1:10539420-10539439 | MS.gene57320:CDS | 35.0% | |
| ATTGAAGGTTGCAATTCATG+AGG | + | chr4.1:10541575-10541594 | MS.gene57320:intron | 35.0% | |
| CAACCAGTCAAATATAGTGT+TGG | - | chr4.1:10540355-10540374 | None:intergenic | 35.0% | |
| CAACGTTGATATCCTTGTTA+GGG | - | chr4.1:10538915-10538934 | None:intergenic | 35.0% | |
| CAATATGATCACATGGAGTT+TGG | - | chr4.1:10543037-10543056 | None:intergenic | 35.0% | |
| CATTTGATCGTGATAGATGA+TGG | + | chr4.1:10543327-10543346 | MS.gene57320:CDS | 35.0% | |
| CGAATTGAATGGATCATGTA+TGG | + | chr4.1:10540661-10540680 | MS.gene57320:intron | 35.0% | |
| CTGTTGTTACATGTAGCATT+TGG | - | chr4.1:10539412-10539431 | None:intergenic | 35.0% | |
| CTTCCACTAATACAAAAGAG+CGG | - | chr4.1:10540826-10540845 | None:intergenic | 35.0% | |
| GAAAAGTTAAAGCAGATTCG+GGG | - | chr4.1:10539609-10539628 | None:intergenic | 35.0% | |
| GAACATGTTATTACCTTCAG+TGG | - | chr4.1:10541717-10541736 | None:intergenic | 35.0% | |
| GTAAAAATCACCCTGCAAAT+TGG | - | chr4.1:10539695-10539714 | None:intergenic | 35.0% | |
| GTAGAAGAGAAATAGACATC+AGG | + | chr4.1:10539997-10540016 | MS.gene57320:CDS | 35.0% | |
| GTAGCATTTGGACAAATTGT+TGG | - | chr4.1:10539400-10539419 | None:intergenic | 35.0% | |
| GTTCACAAATCTACTCATGA+AGG | + | chr4.1:10540519-10540538 | MS.gene57320:CDS | 35.0% | |
| TAGACGATTGCAAGGTAAAA+TGG | - | chr4.1:10542655-10542674 | None:intergenic | 35.0% | |
| TCCTTCTTATGCTAATGAGT+GGG | + | chr4.1:10540496-10540515 | MS.gene57320:CDS | 35.0% | |
| TGACCAACACTATATTTGAC+TGG | + | chr4.1:10540349-10540368 | MS.gene57320:intron | 35.0% | |
| TGAGATTGTAGAACATGCTA+GGG | + | chr4.1:10539558-10539577 | MS.gene57320:CDS | 35.0% | |
| TGATAAGTCTAAACCACTGA+AGG | + | chr4.1:10541701-10541720 | MS.gene57320:CDS | 35.0% | |
| TGGATGAAGTTCAAAGAATG+AGG | + | chr4.1:10540394-10540413 | MS.gene57320:CDS | 35.0% | |
| TTCTGATGATAACCCTAACA+AGG | + | chr4.1:10538900-10538919 | MS.gene57320:CDS | 35.0% | |
| TTGTGTTTGTATCCTTGGTT+TGG | + | chr4.1:10540944-10540963 | MS.gene57320:intron | 35.0% | |
| TTTACCTTGCAATCGTCTAT+GGG | + | chr4.1:10542656-10542675 | MS.gene57320:intron | 35.0% | |
| ! | ACTTTCAAGTGTCTAGAATG+TGG | + | chr4.1:10539212-10539231 | MS.gene57320:CDS | 35.0% |
| ! | AGTGTAGCTCCAACTATTTT+TGG | + | chr4.1:10540450-10540469 | MS.gene57320:CDS | 35.0% |
| ! | ATTTGCAGGGTGATTTTTAC+TGG | + | chr4.1:10539695-10539714 | MS.gene57320:intron | 35.0% |
| ! | GCAAATTTACTGATTGGCAA+AGG | + | chr4.1:10539461-10539480 | MS.gene57320:CDS | 35.0% |
| ! | TCAAACCTTGAAAGTATAGC+CGG | - | chr4.1:10541832-10541851 | None:intergenic | 35.0% |
| ! | TTTTACCTTGCAATCGTCTA+TGG | + | chr4.1:10542655-10542674 | MS.gene57320:intron | 35.0% |
| ! | TTTTATTGCCAACTCTGTTC+AGG | + | chr4.1:10539877-10539896 | MS.gene57320:CDS | 35.0% |
| !! | AACTGGAGAGTTTTGTATTG+AGG | + | chr4.1:10540789-10540808 | MS.gene57320:CDS | 35.0% |
| !! | TTATTCAGGTTCTGAACATC+TGG | + | chr4.1:10542943-10542962 | MS.gene57320:intron | 35.0% |
| !!! | AGAGGCATGCATTTTTTTAC+TGG | + | chr4.1:10541509-10541528 | MS.gene57320:intron | 35.0% |
| !!! | TACTTTTTTTCCTTGCAGAG+TGG | + | chr4.1:10542475-10542494 | MS.gene57320:intron | 35.0% |
| AAACGTTTATGTCCCCTCTA+AGG | - | chr4.1:10540551-10540570 | None:intergenic | 40.0% | |
| AATCGTCTTTAGACCAGCTA+AGG | - | chr4.1:10542312-10542331 | None:intergenic | 40.0% | |
| AATTGAGACTTTGCACAGCT+AGG | - | chr4.1:10540588-10540607 | None:intergenic | 40.0% | |
| AGAGAGATCAGAATGTCGTA+GGG | + | chr4.1:10539763-10539782 | MS.gene57320:CDS | 40.0% | |
| AGCTACACTTTCAACAAGCT+TGG | - | chr4.1:10540439-10540458 | None:intergenic | 40.0% | |
| ATAACGAACCTGAACAGAGT+TGG | - | chr4.1:10539888-10539907 | None:intergenic | 40.0% | |
| ATAAGTTTGTCTGTCCACCA+TGG | + | chr4.1:10541170-10541189 | MS.gene57320:intron | 40.0% | |
| CAAGATGGACATAAGAGATC+AGG | + | chr4.1:10541484-10541503 | MS.gene57320:CDS | 40.0% | |
| CACAAACTGTCCAATTTGCA+GGG | + | chr4.1:10539682-10539701 | MS.gene57320:intron | 40.0% | |
| CAGGATTTGTATCAGCTCTA+CGG | - | chr4.1:10542149-10542168 | None:intergenic | 40.0% | |
| CATACCTGATATATTGGCGT+TGG | + | chr4.1:10539730-10539749 | MS.gene57320:CDS | 40.0% | |
| CATGTAACAACAGAGCAAAG+TGG | + | chr4.1:10539419-10539438 | MS.gene57320:CDS | 40.0% | |
| CCAAGATCTGTGTATACATC+TGG | + | chr4.1:10540715-10540734 | MS.gene57320:CDS | 40.0% | |
| CCAGATGTATACACAGATCT+TGG | - | chr4.1:10540718-10540737 | None:intergenic | 40.0% | |
| CCTTCTTATGCTAATGAGTG+GGG | + | chr4.1:10540497-10540516 | MS.gene57320:CDS | 40.0% | |
| CTAGACACTTGAAAGTTCCT+TGG | - | chr4.1:10539208-10539227 | None:intergenic | 40.0% | |
| CTCTTCTACCATCACAAATC+TGG | - | chr4.1:10539986-10540005 | None:intergenic | 40.0% | |
| GAATTGGCTACATCAGAGAT+TGG | + | chr4.1:10539122-10539141 | MS.gene57320:CDS | 40.0% | |
| GACATAAGAGATCAGGTAAG+AGG | + | chr4.1:10541491-10541510 | MS.gene57320:intron | 40.0% | |
| GATTGCAAGGTAAAATGGGT+AGG | - | chr4.1:10542650-10542669 | None:intergenic | 40.0% | |
| GCAACGTTGATATCCTTGTT+AGG | - | chr4.1:10538916-10538935 | None:intergenic | 40.0% | |
| GCACAATATGAGAAGCTATG+TGG | - | chr4.1:10541900-10541919 | None:intergenic | 40.0% | |
| GCACACATACATGATGTTCT+CGG | + | chr4.1:10540298-10540317 | MS.gene57320:intron | 40.0% | |
| GGTAATCTGTAACATCGTCT+GGG | - | chr4.1:10541879-10541898 | None:intergenic | 40.0% | |
| GGTTTATCTATTGCAGGAAG+TGG | + | chr4.1:10543075-10543094 | MS.gene57320:intron | 40.0% | |
| GTCAGATGCAAGAAAACTAC+TGG | + | chr4.1:10542104-10542123 | MS.gene57320:CDS | 40.0% | |
| TATATGCAACACCAGTCAGT+TGG | - | chr4.1:10540139-10540158 | None:intergenic | 40.0% | |
| TCTGTGGGTTTATCTATTGC+AGG | + | chr4.1:10543069-10543088 | MS.gene57320:intron | 40.0% | |
| TGACGTTAGCTGCATTAATC+AGG | - | chr4.1:10542088-10542107 | None:intergenic | 40.0% | |
| TGATACAAATCCTGGCAGTA+GGG | + | chr4.1:10542155-10542174 | MS.gene57320:CDS | 40.0% | |
| TGGTAATCTGTAACATCGTC+TGG | - | chr4.1:10541880-10541899 | None:intergenic | 40.0% | |
| TTATCCCATAGACGATTGCA+AGG | - | chr4.1:10542663-10542682 | None:intergenic | 40.0% | |
| TTGCATATCGGATGACAGTT+AGG | + | chr4.1:10542178-10542197 | MS.gene57320:CDS | 40.0% | |
| ! | AAGGTGTCATCTGGATAATC+AGG | + | chr4.1:10542239-10542258 | MS.gene57320:CDS | 40.0% |
| ! | ACAAGCTTGGTGAAGAAATC+TGG | - | chr4.1:10540426-10540445 | None:intergenic | 40.0% |
| ! | GGTTTGTTCCAGATTTGTGA+TGG | + | chr4.1:10539975-10539994 | MS.gene57320:intron | 40.0% |
| ! | TCAAGTGTCTAGAATGTGGT+GGG | + | chr4.1:10539216-10539235 | MS.gene57320:CDS | 40.0% |
| ! | TTCAAGTGTCTAGAATGTGG+TGG | + | chr4.1:10539215-10539234 | MS.gene57320:CDS | 40.0% |
| !! | GTAAGAACTTGTTTTCAGGC+CGG | + | chr4.1:10541413-10541432 | MS.gene57320:intron | 40.0% |
| !!! | CTATTTTGGGAGCTAGCTTT+TGG | + | chr4.1:10542437-10542456 | MS.gene57320:intron | 40.0% |
| !!! | GAGGCTTTGGAGTTTTGATT+AGG | + | chr4.1:10539035-10539054 | MS.gene57320:intron | 40.0% |
| !!! | GGAGTTTTGATTAGGTCTGT+CGG | + | chr4.1:10539043-10539062 | MS.gene57320:intron | 40.0% |
| AAAGTTCCTTGGAGAAGCTC+AGG | - | chr4.1:10539197-10539216 | None:intergenic | 45.0% | |
| ACATCTGGATACCCTTTGTC+TGG | + | chr4.1:10542958-10542977 | MS.gene57320:intron | 45.0% | |
| ACATTCTGATCTCTCTCCAG+GGG | - | chr4.1:10539759-10539778 | None:intergenic | 45.0% | |
| ACTGCTAAACGAACATGACG+AGG | - | chr4.1:10542358-10542377 | None:intergenic | 45.0% | |
| AGTTCTGCTGTAGTGAACGT+TGG | - | chr4.1:10541955-10541974 | None:intergenic | 45.0% | |
| ATCCAGATGACACCTTGCAA+TGG | - | chr4.1:10542235-10542254 | None:intergenic | 45.0% | |
| ATTGTAGAACATGCTAGGGC+TGG | + | chr4.1:10539562-10539581 | MS.gene57320:CDS | 45.0% | |
| CAAGATATGGACGAAGAAGC+AGG | + | chr4.1:10542533-10542552 | MS.gene57320:CDS | 45.0% | |
| CAGCTCTATAGAACTAGCGT+AGG | + | chr4.1:10540871-10540890 | MS.gene57320:intron | 45.0% | |
| CCACAAACTGTCCAATTTGC+AGG | + | chr4.1:10539681-10539700 | MS.gene57320:intron | 45.0% | |
| CCCCACTCATTAGCATAAGA+AGG | - | chr4.1:10540500-10540519 | None:intergenic | 45.0% | |
| CCTGCAAATTGGACAGTTTG+TGG | - | chr4.1:10539684-10539703 | None:intergenic | 45.0% | |
| CGTAGAGCTGATACAAATCC+TGG | + | chr4.1:10542147-10542166 | MS.gene57320:CDS | 45.0% | |
| CTCCATAACAAACCTCTTGC+AGG | - | chr4.1:10538863-10538882 | None:intergenic | 45.0% | |
| CTGATACAAATCCTGGCAGT+AGG | + | chr4.1:10542154-10542173 | MS.gene57320:CDS | 45.0% | |
| GAAAGTCATCATCTGCTGCT+GGG | + | chr4.1:10540737-10540756 | MS.gene57320:CDS | 45.0% | |
| GAAGCCAACGCCAATATATC+AGG | - | chr4.1:10539737-10539756 | None:intergenic | 45.0% | |
| GACATTCTGATCTCTCTCCA+GGG | - | chr4.1:10539760-10539779 | None:intergenic | 45.0% | |
| GAGAGAGATCAGAATGTCGT+AGG | + | chr4.1:10539762-10539781 | MS.gene57320:CDS | 45.0% | |
| GATTTAACAGGCTCAGGAAC+TGG | + | chr4.1:10540374-10540393 | MS.gene57320:intron | 45.0% | |
| GCTTAGTTCAGAATCCATGG+TGG | - | chr4.1:10541187-10541206 | None:intergenic | 45.0% | |
| GCTTGTATCTGTAACAGGAG+TGG | + | chr4.1:10539148-10539167 | MS.gene57320:CDS | 45.0% | |
| GGCAATAAAAGCAAGTCGGT+AGG | - | chr4.1:10539867-10539886 | None:intergenic | 45.0% | |
| GGTAGGCTTGTATCTGTAAC+AGG | + | chr4.1:10539143-10539162 | MS.gene57320:CDS | 45.0% | |
| GGTTGCAATTCATGAGGCTA+TGG | + | chr4.1:10541581-10541600 | MS.gene57320:intron | 45.0% | |
| TAAAAGCAAGTCGGTAGGAG+AGG | - | chr4.1:10539862-10539881 | None:intergenic | 45.0% | |
| TAATTACAGTTCCGTGGAGG+AGG | + | chr4.1:10543161-10543180 | MS.gene57320:CDS | 45.0% | |
| TGGCTACATCAGAGATTGGT+AGG | + | chr4.1:10539126-10539145 | MS.gene57320:CDS | 45.0% | |
| TTACTGGCATTTGAGGGTCA+TGG | + | chr4.1:10541525-10541544 | MS.gene57320:intron | 45.0% | |
| TTAGGGGGAAATAACAGGGA+TGG | - | chr4.1:10540220-10540239 | None:intergenic | 45.0% | |
| TTGCAGGCATTCTGCAAGTA+AGG | - | chr4.1:10538847-10538866 | None:intergenic | 45.0% | |
| ! | AACCTTGAAAGTATAGCCGG+TGG | - | chr4.1:10541829-10541848 | None:intergenic | 45.0% |
| ! | ATCTGGGAATGAAGGTGTGA+GGG | + | chr4.1:10539811-10539830 | MS.gene57320:CDS | 45.0% |
| ! | CAAGTGTCTAGAATGTGGTG+GGG | + | chr4.1:10539217-10539236 | MS.gene57320:CDS | 45.0% |
| ! | CTGCCGCTCTTTTGTATTAG+TGG | + | chr4.1:10540820-10540839 | MS.gene57320:intron | 45.0% |
| ! | CTGGTTGATTTAACAGGCTC+AGG | + | chr4.1:10540368-10540387 | MS.gene57320:intron | 45.0% |
| ! | CTGTCTAAGACGCATGACAA+GGG | - | chr4.1:10542798-10542817 | None:intergenic | 45.0% |
| ! | GCTTTGATGCTTGCTGACAA+TGG | + | chr4.1:10541437-10541456 | MS.gene57320:CDS | 45.0% |
| ! | GGAAGCTTTAATCAGGCTGT+CGG | + | chr4.1:10542206-10542225 | MS.gene57320:CDS | 45.0% |
| ! | GGCAGTTGGAAGCTTTAATC+AGG | + | chr4.1:10542199-10542218 | MS.gene57320:CDS | 45.0% |
| ! | TCTTTGGGGGTTAGATCCAT+CGG | - | chr4.1:10542729-10542748 | None:intergenic | 45.0% |
| ! | TGATCGTGATAGATGATGGC+AGG | + | chr4.1:10543331-10543350 | MS.gene57320:CDS | 45.0% |
| ! | TTCCACCGGCTATACTTTCA+AGG | + | chr4.1:10541824-10541843 | MS.gene57320:CDS | 45.0% |
| !! | ATGAAGGCATCAGCCTTAGA+GGG | + | chr4.1:10540535-10540554 | MS.gene57320:CDS | 45.0% |
| !! | GCTGGTTTGTGCGAATTGAA+TGG | + | chr4.1:10540650-10540669 | MS.gene57320:intron | 45.0% |
| !! | TGAGAGGTATTGCCTGAGTT+CGG | + | chr4.1:10541296-10541315 | MS.gene57320:intron | 45.0% |
| !! | TGCCTGCAAGAGGTTTGTTA+TGG | + | chr4.1:10538858-10538877 | MS.gene57320:CDS | 45.0% |
| !!! | TATGAATAATATAAAATTTT+TGG | + | chr4.1:10540166-10540185 | MS.gene57320:intron | 5.0% |
| AACGATGCTGATGGTCAAGC+TGG | + | chr4.1:10542578-10542597 | MS.gene57320:CDS | 50.0% | |
| ACGTCCAATGAGATACCTGC+TGG | + | chr4.1:10539499-10539518 | MS.gene57320:CDS | 50.0% | |
| ACTTGCAGAATGCCTGCAAG+AGG | + | chr4.1:10538848-10538867 | MS.gene57320:CDS | 50.0% | |
| AGAGCCAGCAGGTATCTCAT+TGG | - | chr4.1:10539506-10539525 | None:intergenic | 50.0% | |
| AGCTGGAAACTCTACTGCTC+AGG | + | chr4.1:10542595-10542614 | MS.gene57320:CDS | 50.0% | |
| AGCTGTCATGACCAACTGAC+TGG | + | chr4.1:10540125-10540144 | MS.gene57320:intron | 50.0% | |
| AGGGAAGCTTCTCAACGCAA+GGG | + | chr4.1:10539782-10539801 | MS.gene57320:CDS | 50.0% | |
| AGTGGTGACAAGGACAAGTG+AGG | + | chr4.1:10539166-10539185 | MS.gene57320:CDS | 50.0% | |
| ATTGCAGGAAGTGGCTTAGC+TGG | + | chr4.1:10543084-10543103 | MS.gene57320:intron | 50.0% | |
| CGACATTCTGATCTCTCTCC+AGG | - | chr4.1:10539761-10539780 | None:intergenic | 50.0% | |
| CTGGCAGTAGGGTTGCATAT+CGG | + | chr4.1:10542166-10542185 | MS.gene57320:CDS | 50.0% | |
| CTGTAACAGGAGTGGTGACA+AGG | + | chr4.1:10539156-10539175 | MS.gene57320:CDS | 50.0% | |
| CTTAGCTGGGATGAAGCAAC+GGG | + | chr4.1:10543098-10543117 | MS.gene57320:CDS | 50.0% | |
| CTTGCAGAAAAACCAGCCGA+TGG | + | chr4.1:10542710-10542729 | MS.gene57320:intron | 50.0% | |
| GAAGAAGCAGGTAGTGACGA+TGG | + | chr4.1:10542545-10542564 | MS.gene57320:CDS | 50.0% | |
| GAGGAGACCGTAATGCAAGA+AGG | + | chr4.1:10542821-10542840 | MS.gene57320:CDS | 50.0% | |
| GATTAGGTCTGTCGGTGTGA+GGG | + | chr4.1:10539051-10539070 | MS.gene57320:intron | 50.0% | |
| GCTTAGCTGGGATGAAGCAA+CGG | + | chr4.1:10543097-10543116 | MS.gene57320:CDS | 50.0% | |
| GGAAAGTCATCATCTGCTGC+TGG | + | chr4.1:10540736-10540755 | MS.gene57320:CDS | 50.0% | |
| GGTGCTTCATCTGGGAATGA+AGG | + | chr4.1:10539803-10539822 | MS.gene57320:CDS | 50.0% | |
| GTACAATGTGGCTCTTCCAC+CGG | + | chr4.1:10541810-10541829 | MS.gene57320:intron | 50.0% | |
| GTTGACTGCAACTGTTGCCA+AGG | + | chr4.1:10540759-10540778 | MS.gene57320:CDS | 50.0% | |
| GTTGCCAAGGAACCAGAAAC+TGG | + | chr4.1:10540772-10540791 | MS.gene57320:CDS | 50.0% | |
| TAGGGAAGCTTCTCAACGCA+AGG | + | chr4.1:10539781-10539800 | MS.gene57320:CDS | 50.0% | |
| TATCATACCGTCCTCCAGCA+GGG | - | chr4.1:10541686-10541705 | None:intergenic | 50.0% | |
| TCACTTGACTCCACTCTGCA+AGG | - | chr4.1:10542488-10542507 | None:intergenic | 50.0% | |
| TCGGATGACAGTTAGGCAGT+TGG | + | chr4.1:10542185-10542204 | MS.gene57320:CDS | 50.0% | |
| TGATTAGGTCTGTCGGTGTG+AGG | + | chr4.1:10539050-10539069 | MS.gene57320:intron | 50.0% | |
| TTATCATACCGTCCTCCAGC+AGG | - | chr4.1:10541687-10541706 | None:intergenic | 50.0% | |
| TTCAACTTTCGCCTCCTCCA+CGG | - | chr4.1:10543175-10543194 | None:intergenic | 50.0% | |
| TTGCAGGAAGTGGCTTAGCT+GGG | + | chr4.1:10543085-10543104 | MS.gene57320:intron | 50.0% | |
| TTGGCAAAGGGTCAGAATGC+AGG | + | chr4.1:10539474-10539493 | MS.gene57320:CDS | 50.0% | |
| ! | AGCTTTAATCAGGCTGTCGG+AGG | + | chr4.1:10542209-10542228 | MS.gene57320:CDS | 50.0% |
| ! | CATCTGGGAATGAAGGTGTG+AGG | + | chr4.1:10539810-10539829 | MS.gene57320:CDS | 50.0% |
| ! | GCTGTCTAAGACGCATGACA+AGG | - | chr4.1:10542799-10542818 | None:intergenic | 50.0% |
| ! | TCAAAGGTGCGCCAGACAAA+GGG | - | chr4.1:10542972-10542991 | None:intergenic | 50.0% |
| ! | TCTGGGAATGAAGGTGTGAG+GGG | + | chr4.1:10539812-10539831 | MS.gene57320:CDS | 50.0% |
| !! | AACGCAAGGGTGCTTCATCT+GGG | + | chr4.1:10539795-10539814 | MS.gene57320:CDS | 50.0% |
| !! | CATGAAGGCATCAGCCTTAG+AGG | + | chr4.1:10540534-10540553 | MS.gene57320:CDS | 50.0% |
| !! | CTCTCCAGTTTCTGGTTCCT+TGG | - | chr4.1:10540779-10540798 | None:intergenic | 50.0% |
| !! | TGAAGGCATCAGCCTTAGAG+GGG | + | chr4.1:10540536-10540555 | MS.gene57320:CDS | 50.0% |
| AAGACGCATGACAAGGGCCT+TGG | - | chr4.1:10542792-10542811 | None:intergenic | 55.0% | |
| CAAGCAGCATCAGAAGCTGC+TGG | + | chr4.1:10543354-10543373 | MS.gene57320:CDS | 55.0% | |
| CATGCGTCTTAGACAGCACG+AGG | + | chr4.1:10542802-10542821 | MS.gene57320:CDS | 55.0% | |
| CGATATGCAACCCTACTGCC+AGG | - | chr4.1:10542168-10542187 | None:intergenic | 55.0% | |
| CTCTGACTCCCAAAGCCCTA+AGG | - | chr4.1:10539838-10539857 | None:intergenic | 55.0% | |
| GGCATTTGAGGGTCATGGAC+TGG | + | chr4.1:10541530-10541549 | MS.gene57320:intron | 55.0% | |
| GTCAGCAAGCATCAAAGCGC+CGG | - | chr4.1:10541435-10541454 | None:intergenic | 55.0% | |
| GTTCGACCTGAGCTTCTCCA+AGG | + | chr4.1:10539188-10539207 | MS.gene57320:CDS | 55.0% | |
| TGGCTCTCTGCCTAGGTCAT+TGG | + | chr4.1:10539519-10539538 | MS.gene57320:CDS | 55.0% | |
| ! | ATGAAGGTGTGAGGGGCCTT+AGG | + | chr4.1:10539819-10539838 | MS.gene57320:CDS | 55.0% |
| ! | CTCAAAGGTGCGCCAGACAA+AGG | - | chr4.1:10542973-10542992 | None:intergenic | 55.0% |
| ! | GGCCATTGCAAGGTGTCATC+TGG | + | chr4.1:10542230-10542249 | MS.gene57320:CDS | 55.0% |
| ! | TGAAGGTGTGAGGGGCCTTA+GGG | + | chr4.1:10539820-10539839 | MS.gene57320:CDS | 55.0% |
| !! | ATATTGGCGTTGGCTTCCCC+TGG | + | chr4.1:10539740-10539759 | MS.gene57320:CDS | 55.0% |
| !! | CAACGCAAGGGTGCTTCATC+TGG | + | chr4.1:10539794-10539813 | MS.gene57320:CDS | 55.0% |
| ATACCGTCCTCCAGCAGGGT+TGG | - | chr4.1:10541682-10541701 | None:intergenic | 60.0% | |
| GTGAGGGGCCTTAGGGCTTT+GGG | + | chr4.1:10539827-10539846 | MS.gene57320:CDS | 60.0% | |
| TCTACTGCTCAGGAAGCCGC+TGG | + | chr4.1:10542605-10542624 | MS.gene57320:CDS | 60.0% | |
| TGGGGGTTAGATCCATCGGC+TGG | - | chr4.1:10542725-10542744 | None:intergenic | 60.0% | |
| TGTGAGGGGCCTTAGGGCTT+TGG | + | chr4.1:10539826-10539845 | MS.gene57320:CDS | 60.0% | |
| ! | AGGGTTGGCAGCGGCAAGAA+TGG | - | chr4.1:10541667-10541686 | None:intergenic | 60.0% |
| !! | TACCTGCTGGCTCTCTGCCT+AGG | + | chr4.1:10539512-10539531 | MS.gene57320:CDS | 60.0% |
| CTGCCAACCCTGCTGGAGGA+CGG | + | chr4.1:10541676-10541695 | MS.gene57320:CDS | 65.0% | |
| GACCTAGGCAGAGAGCCAGC+AGG | - | chr4.1:10539517-10539536 | None:intergenic | 65.0% | |
| GGCTGTCGGAGGCCATTGCA+AGG | + | chr4.1:10542220-10542239 | MS.gene57320:CDS | 65.0% | |
| ! | TCCTCCAGCAGGGTTGGCAG+CGG | - | chr4.1:10541676-10541695 | None:intergenic | 65.0% |
| CTTGCCGCTGCCAACCCTGC+TGG | + | chr4.1:10541669-10541688 | MS.gene57320:CDS | 70.0% | |
| GCCGCTGCCAACCCTGCTGG+AGG | + | chr4.1:10541672-10541691 | MS.gene57320:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 10538636 | 10543449 | 10538636 | ID=MS.gene57320 |
| chr4.1 | mRNA | 10538636 | 10543449 | 10538636 | ID=MS.gene57320.t1;Parent=MS.gene57320 |
| chr4.1 | exon | 10538636 | 10538733 | 10538636 | ID=MS.gene57320.t1.exon1;Parent=MS.gene57320.t1 |
| chr4.1 | CDS | 10538636 | 10538733 | 10538636 | ID=cds.MS.gene57320.t1;Parent=MS.gene57320.t1 |
| chr4.1 | exon | 10538837 | 10538962 | 10538837 | ID=MS.gene57320.t1.exon2;Parent=MS.gene57320.t1 |
| chr4.1 | CDS | 10538837 | 10538962 | 10538837 | ID=cds.MS.gene57320.t1;Parent=MS.gene57320.t1 |
| chr4.1 | exon | 10539115 | 10539277 | 10539115 | ID=MS.gene57320.t1.exon3;Parent=MS.gene57320.t1 |
| chr4.1 | CDS | 10539115 | 10539277 | 10539115 | ID=cds.MS.gene57320.t1;Parent=MS.gene57320.t1 |
| chr4.1 | exon | 10539397 | 10539590 | 10539397 | ID=MS.gene57320.t1.exon4;Parent=MS.gene57320.t1 |
| chr4.1 | CDS | 10539397 | 10539590 | 10539397 | ID=cds.MS.gene57320.t1;Parent=MS.gene57320.t1 |
| chr4.1 | exon | 10539703 | 10539898 | 10539703 | ID=MS.gene57320.t1.exon5;Parent=MS.gene57320.t1 |
| chr4.1 | CDS | 10539703 | 10539898 | 10539703 | ID=cds.MS.gene57320.t1;Parent=MS.gene57320.t1 |
| chr4.1 | exon | 10539987 | 10540061 | 10539987 | ID=MS.gene57320.t1.exon6;Parent=MS.gene57320.t1 |
| chr4.1 | CDS | 10539987 | 10540061 | 10539987 | ID=cds.MS.gene57320.t1;Parent=MS.gene57320.t1 |
| chr4.1 | exon | 10540384 | 10540613 | 10540384 | ID=MS.gene57320.t1.exon7;Parent=MS.gene57320.t1 |
| chr4.1 | CDS | 10540384 | 10540613 | 10540384 | ID=cds.MS.gene57320.t1;Parent=MS.gene57320.t1 |
| chr4.1 | exon | 10540696 | 10540810 | 10540696 | ID=MS.gene57320.t1.exon8;Parent=MS.gene57320.t1 |
| chr4.1 | CDS | 10540696 | 10540810 | 10540696 | ID=cds.MS.gene57320.t1;Parent=MS.gene57320.t1 |
| chr4.1 | exon | 10541431 | 10541505 | 10541431 | ID=MS.gene57320.t1.exon9;Parent=MS.gene57320.t1 |
| chr4.1 | CDS | 10541431 | 10541505 | 10541431 | ID=cds.MS.gene57320.t1;Parent=MS.gene57320.t1 |
| chr4.1 | exon | 10541582 | 10541722 | 10541582 | ID=MS.gene57320.t1.exon10;Parent=MS.gene57320.t1 |
| chr4.1 | CDS | 10541582 | 10541722 | 10541582 | ID=cds.MS.gene57320.t1;Parent=MS.gene57320.t1 |
| chr4.1 | exon | 10541811 | 10542014 | 10541811 | ID=MS.gene57320.t1.exon11;Parent=MS.gene57320.t1 |
| chr4.1 | CDS | 10541811 | 10542014 | 10541811 | ID=cds.MS.gene57320.t1;Parent=MS.gene57320.t1 |
| chr4.1 | exon | 10542099 | 10542260 | 10542099 | ID=MS.gene57320.t1.exon12;Parent=MS.gene57320.t1 |
| chr4.1 | CDS | 10542099 | 10542260 | 10542099 | ID=cds.MS.gene57320.t1;Parent=MS.gene57320.t1 |
| chr4.1 | exon | 10542349 | 10542404 | 10542349 | ID=MS.gene57320.t1.exon13;Parent=MS.gene57320.t1 |
| chr4.1 | CDS | 10542349 | 10542404 | 10542349 | ID=cds.MS.gene57320.t1;Parent=MS.gene57320.t1 |
| chr4.1 | exon | 10542493 | 10542635 | 10542493 | ID=MS.gene57320.t1.exon14;Parent=MS.gene57320.t1 |
| chr4.1 | CDS | 10542493 | 10542635 | 10542493 | ID=cds.MS.gene57320.t1;Parent=MS.gene57320.t1 |
| chr4.1 | exon | 10542717 | 10542842 | 10542717 | ID=MS.gene57320.t1.exon15;Parent=MS.gene57320.t1 |
| chr4.1 | CDS | 10542717 | 10542842 | 10542717 | ID=cds.MS.gene57320.t1;Parent=MS.gene57320.t1 |
| chr4.1 | exon | 10543091 | 10543221 | 10543091 | ID=MS.gene57320.t1.exon16;Parent=MS.gene57320.t1 |
| chr4.1 | CDS | 10543091 | 10543221 | 10543091 | ID=cds.MS.gene57320.t1;Parent=MS.gene57320.t1 |
| chr4.1 | exon | 10543306 | 10543449 | 10543306 | ID=MS.gene57320.t1.exon17;Parent=MS.gene57320.t1 |
| chr4.1 | CDS | 10543306 | 10543449 | 10543306 | ID=cds.MS.gene57320.t1;Parent=MS.gene57320.t1 |
| Gene Sequence |
| Protein sequence |
