Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99093.t1 | XP_003616102.1 | 94.6 | 574 | 23 | 3 | 86 | 653 | 80 | 651 | 3.00E-235 | 824.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99093.t1 | Q5XVH5 | 41.9 | 485 | 155 | 16 | 128 | 599 | 85 | 455 | 6.1e-43 | 177.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99093.t1 | G7K5X9 | 94.6 | 574 | 23 | 3 | 86 | 653 | 80 | 651 | 2.2e-235 | 824.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049328 | MS.gene99093 | 0.84142 | 4.80E-58 | -1.69E-46 |
| MS.gene049397 | MS.gene99093 | 0.836327 | 9.99E-57 | -1.69E-46 |
| MS.gene049418 | MS.gene99093 | 0.835142 | 1.99E-56 | -1.69E-46 |
| MS.gene049596 | MS.gene99093 | 0.814308 | 1.65E-51 | -1.69E-46 |
| MS.gene049622 | MS.gene99093 | 0.817924 | 2.56E-52 | -1.69E-46 |
| MS.gene04985 | MS.gene99093 | 0.843222 | 1.60E-58 | -1.69E-46 |
| MS.gene049989 | MS.gene99093 | 0.914331 | 2.17E-84 | -1.69E-46 |
| MS.gene050297 | MS.gene99093 | 0.918652 | 1.20E-86 | -1.69E-46 |
| MS.gene050310 | MS.gene99093 | 0.872699 | 2.60E-67 | -1.69E-46 |
| MS.gene050648 | MS.gene99093 | 0.878658 | 2.35E-69 | -1.69E-46 |
| MS.gene051067 | MS.gene99093 | 0.835358 | 1.76E-56 | -1.69E-46 |
| MS.gene051094 | MS.gene99093 | 0.86787 | 9.94E-66 | -1.69E-46 |
| MS.gene051263 | MS.gene99093 | 0.88192 | 1.61E-70 | -1.69E-46 |
| MS.gene051478 | MS.gene99093 | 0.874524 | 6.32E-68 | -1.69E-46 |
| MS.gene051629 | MS.gene99093 | 0.858932 | 5.86E-63 | -1.69E-46 |
| MS.gene051648 | MS.gene99093 | 0.800244 | 1.58E-48 | -1.69E-46 |
| MS.gene051671 | MS.gene99093 | 0.817746 | 2.81E-52 | -1.69E-46 |
| MS.gene051698 | MS.gene99093 | 0.811737 | 6.03E-51 | -1.69E-46 |
| MS.gene051955 | MS.gene99093 | 0.818534 | 1.86E-52 | -1.69E-46 |
| MS.gene052041 | MS.gene99093 | 0.814463 | 1.52E-51 | -1.69E-46 |
| MS.gene052143 | MS.gene99093 | 0.809879 | 1.52E-50 | -1.69E-46 |
| MS.gene052367 | MS.gene99093 | 0.864026 | 1.63E-64 | -1.69E-46 |
| MS.gene052731 | MS.gene99093 | 0.812494 | 4.12E-51 | -1.69E-46 |
| MS.gene053416 | MS.gene99093 | 0.862655 | 4.35E-64 | -1.69E-46 |
| MS.gene053417 | MS.gene99093 | 0.866001 | 3.92E-65 | -1.69E-46 |
| MS.gene05369 | MS.gene99093 | 0.810391 | 1.18E-50 | -1.69E-46 |
| MS.gene053929 | MS.gene99093 | 0.801055 | 1.08E-48 | -1.69E-46 |
| MS.gene054643 | MS.gene99093 | 0.869494 | 2.97E-66 | -1.69E-46 |
| MS.gene055411 | MS.gene99093 | 0.835753 | 1.40E-56 | -1.69E-46 |
| MS.gene055764 | MS.gene99093 | 0.808731 | 2.68E-50 | -1.69E-46 |
| MS.gene055781 | MS.gene99093 | 0.838324 | 3.08E-57 | -1.69E-46 |
| MS.gene055957 | MS.gene99093 | 0.855838 | 4.82E-62 | -1.69E-46 |
| MS.gene056041 | MS.gene99093 | 0.842594 | 2.35E-58 | -1.69E-46 |
| MS.gene056042 | MS.gene99093 | 0.850673 | 1.46E-60 | -1.69E-46 |
| MS.gene056169 | MS.gene99093 | 0.847767 | 9.39E-60 | -1.69E-46 |
| MS.gene056228 | MS.gene99093 | 0.832212 | 1.08E-55 | -1.69E-46 |
| MS.gene056335 | MS.gene99093 | 0.824562 | 7.54E-54 | -1.69E-46 |
| MS.gene056526 | MS.gene99093 | 0.827744 | 1.32E-54 | -1.69E-46 |
| MS.gene057004 | MS.gene99093 | 0.848083 | 7.68E-60 | -1.69E-46 |
| MS.gene057082 | MS.gene99093 | 0.800445 | 1.44E-48 | -1.69E-46 |
| MS.gene057483 | MS.gene99093 | 0.84307 | 1.76E-58 | -1.69E-46 |
| MS.gene058196 | MS.gene99093 | 0.875238 | 3.61E-68 | -1.69E-46 |
| MS.gene058197 | MS.gene99093 | 0.903463 | 3.38E-79 | -1.69E-46 |
| MS.gene058198 | MS.gene99093 | 0.900856 | 4.82E-78 | -1.69E-46 |
| MS.gene058818 | MS.gene99093 | 0.853663 | 2.06E-61 | -1.69E-46 |
| MS.gene058844 | MS.gene99093 | 0.82442 | 8.15E-54 | -1.69E-46 |
| MS.gene059300 | MS.gene99093 | 0.912368 | 2.11E-83 | -1.69E-46 |
| MS.gene060473 | MS.gene99093 | 0.864016 | 1.65E-64 | -1.69E-46 |
| MS.gene060565 | MS.gene99093 | 0.872757 | 2.49E-67 | -1.69E-46 |
| MS.gene06057 | MS.gene99093 | 0.922312 | 1.16E-88 | -1.69E-46 |
| MS.gene061260 | MS.gene99093 | 0.841987 | 3.40E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99093.t1 | MTR_5g076140 | 95.599 | 659 | 15 | 5 | 1 | 653 | 1 | 651 | 0.0 | 1256 |
| MS.gene99093.t1 | MTR_3g063210 | 41.434 | 753 | 248 | 26 | 1 | 649 | 1 | 664 | 2.96e-106 | 337 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99093.t1 | AT5G37010 | 36.783 | 715 | 278 | 31 | 1 | 647 | 1 | 609 | 4.23e-73 | 248 |
| MS.gene99093.t1 | AT1G65710 | 36.146 | 628 | 199 | 25 | 1 | 599 | 1 | 455 | 3.01e-59 | 206 |
Find 119 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATGGAACATTTGTTCTTC+TGG | 0.205146 | 5.2:+64099692 | MS.gene99093:CDS |
| CTAAGAGGGTTTCTTCTATA+AGG | 0.245007 | 5.2:-64098417 | None:intergenic |
| AACAGTAATGGTTCTGGTTC+AGG | 0.276473 | 5.2:+64098114 | MS.gene99093:CDS |
| AGATTAAGCAGAAGCTCTTC+TGG | 0.279054 | 5.2:+64097766 | MS.gene99093:CDS |
| ACATTCCCATTTCCTCTTGC+AGG | 0.287911 | 5.2:-64098330 | None:intergenic |
| CGTTGATCTCTTTCTCTACT+TGG | 0.292517 | 5.2:-64098018 | None:intergenic |
| TGTGGATAAGCAAGTGAATT+AGG | 0.300136 | 5.2:-64098450 | None:intergenic |
| GAAGAAGAAGAAGCTTTCTT+TGG | 0.300588 | 5.2:-64097976 | None:intergenic |
| GGTGGATTGGTTAGAGGTTC+GGG | 0.304904 | 5.2:-64099326 | None:intergenic |
| TTGTACTAGGCCAGGGAAAA+TGG | 0.305744 | 5.2:+64098137 | MS.gene99093:CDS |
| AAAGCTTCTTCTTCTTCTAA+TGG | 0.317765 | 5.2:+64097982 | MS.gene99093:CDS |
| TTGTCCCTCATTTCAACATT+TGG | 0.318273 | 5.2:-64099119 | None:intergenic |
| TGGTGGATTGGTTAGAGGTT+CGG | 0.323939 | 5.2:-64099327 | None:intergenic |
| ATGTCACCTGCAAGAGGAAA+TGG | 0.328874 | 5.2:+64098324 | MS.gene99093:CDS |
| ATGTCACCTGCTAGAGGAAA+TGG | 0.330105 | 5.2:+64098270 | MS.gene99093:CDS |
| GGAAGAAGATCATCTGAAAA+TGG | 0.337292 | 5.2:+64098078 | MS.gene99093:CDS |
| AAGCTTTCTTTGGTGAATTC+CGG | 0.339092 | 5.2:-64097966 | None:intergenic |
| TCTTCAGCTAGGAAATATTC+TGG | 0.344816 | 5.2:+64097805 | MS.gene99093:CDS |
| ATCATTGAACAGCAACAATA+AGG | 0.348913 | 5.2:+64097669 | MS.gene99093:CDS |
| TGTGAGGATCAAGAGTCTTC+AGG | 0.358544 | 5.2:+64099635 | MS.gene99093:CDS |
| CCACAATCAAATGCTAATAA+TGG | 0.358815 | 5.2:+64098468 | MS.gene99093:CDS |
| TACTGTTACATCATTGGTTA+TGG | 0.360201 | 5.2:+64098173 | MS.gene99093:CDS |
| GATTGAAGTTGAGACTATTC+AGG | 0.360640 | 5.2:+64098524 | MS.gene99093:CDS |
| GATTCTACAAATGATGATTC+AGG | 0.361087 | 5.2:-64099536 | None:intergenic |
| GACAAACAGCAGAGTTACTA+TGG | 0.362538 | 5.2:+64099154 | MS.gene99093:CDS |
| AGTTCAGAACAAAGGCAAAA+AGG | 0.367310 | 5.2:+64098500 | MS.gene99093:CDS |
| TCCTGCTACTGTTACATCAT+TGG | 0.374850 | 5.2:+64098167 | MS.gene99093:CDS |
| GTTTGTGGTGGATTGGTTAG+AGG | 0.379183 | 5.2:-64099332 | None:intergenic |
| GATGAACAGAAGAGAGTTCA+TGG | 0.381723 | 5.2:+64097886 | MS.gene99093:CDS |
| CTGGTGATTCATCGGATTGT+TGG | 0.383426 | 5.2:+64099711 | MS.gene99093:CDS |
| GTGGAGGAGAAGGTGTTAAG+AGG | 0.397596 | 5.2:+64098211 | MS.gene99093:CDS |
| AAGAATGTGGTGATGCCATC+TGG | 0.402994 | 5.2:+64099251 | MS.gene99093:CDS |
| CAGCAGAGTTACTATGGAAA+AGG | 0.407916 | 5.2:+64099160 | MS.gene99093:CDS |
| GTTCTGGTTCAGGTTGTACT+AGG | 0.417475 | 5.2:+64098124 | MS.gene99093:CDS |
| AAGTGATTTGGTGGAAGAAA+GGG | 0.427395 | 5.2:-64097362 | None:intergenic |
| TAAGATCAGCAACAGCTTCA+AGG | 0.433635 | 5.2:-64099460 | None:intergenic |
| CATCAGCATAGTGGTGGTAT+TGG | 0.433740 | 5.2:+64099785 | MS.gene99093:CDS |
| GTTCCATCACAACAAAATGA+TGG | 0.444007 | 5.2:+64097622 | MS.gene99093:CDS |
| GGTTCAGGTTGTACTAGGCC+AGG | 0.450436 | 5.2:+64098129 | MS.gene99093:CDS |
| TGAGGGACAACACAAGAAAC+AGG | 0.453620 | 5.2:+64099132 | MS.gene99093:CDS |
| AATAATAACAGTAATGGTTC+TGG | 0.457810 | 5.2:+64098108 | MS.gene99093:CDS |
| CCACACAAAGGAACAACAAC+AGG | 0.462368 | 5.2:+64099193 | MS.gene99093:CDS |
| AAAGTGATTTGGTGGAAGAA+AGG | 0.463048 | 5.2:-64097363 | None:intergenic |
| CCTGTTGTTGTTCCTTTGTG+TGG | 0.465706 | 5.2:-64099193 | None:intergenic |
| GGTTAGAGGTTCGGGATTGG+TGG | 0.465855 | 5.2:-64099318 | None:intergenic |
| CGTAGAGTGAGTAGATCTCC+TGG | 0.467977 | 5.2:+64098057 | MS.gene99093:CDS |
| AAGGAGTAATGAAGTATATG+AGG | 0.468120 | 5.2:-64099354 | None:intergenic |
| TTGTTCTTCTGGTGATTCAT+CGG | 0.470946 | 5.2:+64099703 | MS.gene99093:CDS |
| ATTGGTTAGAGGTTCGGGAT+TGG | 0.471111 | 5.2:-64099321 | None:intergenic |
| TTAGGATCAACTTCACTAAG+AGG | 0.472460 | 5.2:-64098432 | None:intergenic |
| CAACAAGTTCAACTTTCTCT+AGG | 0.479383 | 5.2:+64099489 | MS.gene99093:CDS |
| AGTAACAATGGTGGAGGAGA+AGG | 0.480978 | 5.2:+64098201 | MS.gene99093:CDS |
| ATCAGCAACCTTCTCTTAGC+AGG | 0.482494 | 5.2:+64098364 | MS.gene99093:CDS |
| TTCGAGATTGAATTCAAAAG+AGG | 0.485046 | 5.2:+64099736 | MS.gene99093:CDS |
| ATCACAACAAAATGATGGGT+TGG | 0.488194 | 5.2:+64097627 | MS.gene99093:CDS |
| CTTCTTCTTCTTCTAATGGA+AGG | 0.491446 | 5.2:+64097986 | MS.gene99093:CDS |
| CCATTCCCATTTCCTCTAGC+AGG | 0.495806 | 5.2:-64098276 | None:intergenic |
| ACCAATGATGTAACAGTAGC+AGG | 0.497665 | 5.2:-64098168 | None:intergenic |
| GGGTGTGGAAAGTGATTTGG+TGG | 0.502086 | 5.2:-64097371 | None:intergenic |
| AGCAGAGTTACTATGGAAAA+GGG | 0.508430 | 5.2:+64099161 | MS.gene99093:CDS |
| GTCACATACTTATGTAAACT+TGG | 0.509026 | 5.2:-64099590 | None:intergenic |
| TGTCACCTGCAAGAGGAAAT+GGG | 0.509249 | 5.2:+64098325 | MS.gene99093:CDS |
| TGTCACCTGCTAGAGGAAAT+GGG | 0.518324 | 5.2:+64098271 | MS.gene99093:CDS |
| AGAGAAAGTTGAACTTGTTG+TGG | 0.518782 | 5.2:-64099486 | None:intergenic |
| AATGAAGTATATGAGGTTTG+TGG | 0.520058 | 5.2:-64099347 | None:intergenic |
| ATATGAGGTTTGTGGTGGAT+TGG | 0.520566 | 5.2:-64099339 | None:intergenic |
| CCATTATTAGCATTTGATTG+TGG | 0.522575 | 5.2:-64098468 | None:intergenic |
| TGGAGGAGAAGGTGTTAAGA+GGG | 0.522678 | 5.2:+64098212 | MS.gene99093:CDS |
| CATAGTGGTGGTATTGGACG+TGG | 0.522968 | 5.2:+64099791 | MS.gene99093:CDS |
| GAGAGGTGGTTCACTTTGTG+AGG | 0.532630 | 5.2:+64099619 | MS.gene99093:CDS |
| CAAGCTTTGTTGAGACAAGC+TGG | 0.533501 | 5.2:-64099431 | None:intergenic |
| ATAACCACCGTCCGCGTCAC+CGG | 0.540741 | 5.2:+64097947 | MS.gene99093:CDS |
| AGTGATTTGGTGGAAGAAAG+GGG | 0.543930 | 5.2:-64097361 | None:intergenic |
| ACAACAACAGGAAGAGATCA+AGG | 0.544746 | 5.2:+64099205 | MS.gene99093:CDS |
| GATAAAAGTAACAATGGTGG+AGG | 0.545003 | 5.2:+64098195 | MS.gene99093:CDS |
| TTCCATCACAACAAAATGAT+GGG | 0.545629 | 5.2:+64097623 | MS.gene99093:CDS |
| AGAAACCAAATGTTGAAATG+AGG | 0.549758 | 5.2:+64099114 | MS.gene99093:intron |
| AGCAACAATAATAACAGTAA+TGG | 0.550380 | 5.2:+64098102 | MS.gene99093:CDS |
| GAAACCAAATGTTGAAATGA+GGG | 0.552067 | 5.2:+64099115 | MS.gene99093:intron |
| CTGCTACTTCATCTTCAGCT+AGG | 0.555761 | 5.2:+64097794 | MS.gene99093:CDS |
| GTGAATTCCGGTGACGCGGA+CGG | 0.557292 | 5.2:-64097954 | None:intergenic |
| ATGAACAGAAGAGAGTTCAT+GGG | 0.559797 | 5.2:+64097887 | MS.gene99093:CDS |
| CAATCAAATGCTAATAATGG+TGG | 0.560234 | 5.2:+64098471 | MS.gene99093:CDS |
| TAGGATCAACTTCACTAAGA+GGG | 0.561077 | 5.2:-64098431 | None:intergenic |
| TTGAACAGCAACAATAAGGT+TGG | 0.562041 | 5.2:+64097673 | MS.gene99093:CDS |
| CTGCTTCTTGTAATCCCAGA+TGG | 0.566170 | 5.2:-64099266 | None:intergenic |
| GTTATGGATAAAAGTAACAA+TGG | 0.571865 | 5.2:+64098189 | MS.gene99093:CDS |
| ATCAGCAACAGCTTCAAGGA+TGG | 0.572404 | 5.2:-64099456 | None:intergenic |
| GAGTTATTCCTGCTAAGAGA+AGG | 0.573600 | 5.2:-64098372 | None:intergenic |
| CGTTCAATGTCACCTGCAAG+AGG | 0.592581 | 5.2:+64098318 | MS.gene99093:CDS |
| TTAGCAGGAATAACTCTGCA+AGG | 0.592969 | 5.2:+64098379 | MS.gene99093:CDS |
| CTTCTTCTAATGGAAGGAGA+AGG | 0.593939 | 5.2:+64097992 | MS.gene99093:CDS |
| AATTCCGGTGACGCGGACGG+TGG | 0.596005 | 5.2:-64097951 | None:intergenic |
| CCTGCTAGAGGAAATGGGAA+TGG | 0.597200 | 5.2:+64098276 | MS.gene99093:CDS |
| AATAAGGTTGGTAGTGCTGT+TGG | 0.597807 | 5.2:+64097685 | MS.gene99093:CDS |
| AGGAATATGATGGTGTTGCT+CGG | 0.600454 | 5.2:+64097923 | MS.gene99093:CDS |
| TATGTGACTGTTAAGAGAGG+TGG | 0.603741 | 5.2:+64099605 | MS.gene99093:CDS |
| AGAATGTGGTGATGCCATCT+GGG | 0.603911 | 5.2:+64099252 | MS.gene99093:CDS |
| GAGTGTGATCATCAGCATAG+TGG | 0.606136 | 5.2:+64099776 | MS.gene99093:CDS |
| TTTGGTGAATTCCGGTGACG+CGG | 0.608706 | 5.2:-64097958 | None:intergenic |
| GTTCAGGTTGTACTAGGCCA+GGG | 0.608850 | 5.2:+64098130 | MS.gene99093:CDS |
| TGAGTAGTGGTCAACAACAA+TGG | 0.614677 | 5.2:+64099675 | MS.gene99093:CDS |
| AATAGTTTCACTGTGAGTAG+TGG | 0.617083 | 5.2:+64099662 | MS.gene99093:CDS |
| ATGGATAAAAGTAACAATGG+TGG | 0.618521 | 5.2:+64098192 | MS.gene99093:CDS |
| GAAGTATATGAGGTTTGTGG+TGG | 0.620927 | 5.2:-64099344 | None:intergenic |
| GATAACAGTGAGGAATATGA+TGG | 0.621876 | 5.2:+64097913 | MS.gene99093:CDS |
| TGTTGTGAGTGATGATGTGA+TGG | 0.622257 | 5.2:+64099565 | MS.gene99093:CDS |
| CGTTCAATGTCACCTGCTAG+AGG | 0.627442 | 5.2:+64098264 | MS.gene99093:CDS |
| GGAAACAAAGTTCAGAACAA+AGG | 0.631074 | 5.2:+64098492 | MS.gene99093:CDS |
| GTGATTTGGTGGAAGAAAGG+GGG | 0.632458 | 5.2:-64097360 | None:intergenic |
| CAAGCTGGAAGAGAAACAGA+AGG | 0.639034 | 5.2:-64099416 | None:intergenic |
| ACATTGTGTTGAACAGTGAA+AGG | 0.652397 | 5.2:-64097601 | None:intergenic |
| GGGTGTGAATTGCCACACAA+AGG | 0.656170 | 5.2:+64099181 | MS.gene99093:CDS |
| TGTGATCATCAGCATAGTGG+TGG | 0.669655 | 5.2:+64099779 | MS.gene99093:CDS |
| GATGCAATTCTAATTCAATG+TGG | 0.677750 | 5.2:+64097742 | MS.gene99093:CDS |
| CTAGCAGGTGACATTGAACG+TGG | 0.678229 | 5.2:-64098261 | None:intergenic |
| AAGTATGTGACTGTTAAGAG+AGG | 0.686254 | 5.2:+64099602 | MS.gene99093:CDS |
| TAATGCTATTGTGAAGAATG+TGG | 0.688273 | 5.2:+64099238 | MS.gene99093:CDS |
| TCATGGGAGTGATAACAGTG+AGG | 0.744139 | 5.2:+64097903 | MS.gene99093:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAAAAATAAAAATTTACT+TGG | - | chr5.2:64098639-64098658 | None:intergenic | 10.0% |
| !! | TCATTTCATAACAAAATTAA+TGG | + | chr5.2:64099002-64099021 | MS.gene99093:intron | 15.0% |
| !! | TGAAATTATAAAACAATCAT+TGG | - | chr5.2:64098691-64098710 | None:intergenic | 15.0% |
| !!! | ATGATAAAAATCTCTTTTTT+TGG | - | chr5.2:64097526-64097545 | None:intergenic | 15.0% |
| !!! | GAAATGAAATTTGAAATTAT+TGG | - | chr5.2:64098989-64099008 | None:intergenic | 15.0% |
| !!! | GTTTTATAATTTCATAGAAA+TGG | + | chr5.2:64098697-64098716 | MS.gene99093:intron | 15.0% |
| !! | AATATAGATAGATAATGATG+TGG | + | chr5.2:64098612-64098631 | MS.gene99093:intron | 20.0% |
| !! | TAAGAATGTACATAAAATGA+TGG | - | chr5.2:64099069-64099088 | None:intergenic | 20.0% |
| !!! | CATATTTTTTCTTAATCATC+CGG | - | chr5.2:64098930-64098949 | None:intergenic | 20.0% |
| ! | AATAATAACAGTAATGGTTC+TGG | + | chr5.2:64098108-64098127 | MS.gene99093:CDS | 25.0% |
| ! | AGCAACAATAATAACAGTAA+TGG | + | chr5.2:64098102-64098121 | MS.gene99093:CDS | 25.0% |
| ! | GTTATGGATAAAAGTAACAA+TGG | + | chr5.2:64098189-64098208 | MS.gene99093:CDS | 25.0% |
| ! | TGATTAAGGTTGAATAGTTT+CGG | + | chr5.2:64098805-64098824 | MS.gene99093:intron | 25.0% |
| !!! | TTTTCTCTCTTTTTTCATCA+TGG | - | chr5.2:64097564-64097583 | None:intergenic | 25.0% |
| AAAGCTTCTTCTTCTTCTAA+TGG | + | chr5.2:64097982-64098001 | MS.gene99093:CDS | 30.0% | |
| AAGGAGTAATGAAGTATATG+AGG | - | chr5.2:64099357-64099376 | None:intergenic | 30.0% | |
| AATGAAGTATATGAGGTTTG+TGG | - | chr5.2:64099350-64099369 | None:intergenic | 30.0% | |
| AGAAACCAAATGTTGAAATG+AGG | + | chr5.2:64099114-64099133 | MS.gene99093:intron | 30.0% | |
| AGCTAAAAATTGCTACACTA+AGG | - | chr5.2:64098848-64098867 | None:intergenic | 30.0% | |
| ATCATTGAACAGCAACAATA+AGG | + | chr5.2:64097669-64097688 | MS.gene99093:CDS | 30.0% | |
| ATGGATAAAAGTAACAATGG+TGG | + | chr5.2:64098192-64098211 | MS.gene99093:CDS | 30.0% | |
| CAATCAAATGCTAATAATGG+TGG | + | chr5.2:64098471-64098490 | MS.gene99093:CDS | 30.0% | |
| CCACAATCAAATGCTAATAA+TGG | + | chr5.2:64098468-64098487 | MS.gene99093:CDS | 30.0% | |
| CCATTATTAGCATTTGATTG+TGG | - | chr5.2:64098471-64098490 | None:intergenic | 30.0% | |
| GAAACCAAATGTTGAAATGA+GGG | + | chr5.2:64099115-64099134 | MS.gene99093:intron | 30.0% | |
| GATGCAATTCTAATTCAATG+TGG | + | chr5.2:64097742-64097761 | MS.gene99093:CDS | 30.0% | |
| GATTCTACAAATGATGATTC+AGG | - | chr5.2:64099539-64099558 | None:intergenic | 30.0% | |
| GTCACATACTTATGTAAACT+TGG | - | chr5.2:64099593-64099612 | None:intergenic | 30.0% | |
| TAATGCTATTGTGAAGAATG+TGG | + | chr5.2:64099238-64099257 | MS.gene99093:CDS | 30.0% | |
| TGGTTAATGTGCTTTGATTA+AGG | + | chr5.2:64098791-64098810 | MS.gene99093:intron | 30.0% | |
| TTCCATCACAACAAAATGAT+GGG | + | chr5.2:64097623-64097642 | MS.gene99093:CDS | 30.0% | |
| TTCGAGATTGAATTCAAAAG+AGG | + | chr5.2:64099736-64099755 | MS.gene99093:CDS | 30.0% | |
| ! | CATGTTCTTTTACAACTTCT+GGG | - | chr5.2:64097498-64097517 | None:intergenic | 30.0% |
| ! | TACTGTTACATCATTGGTTA+TGG | + | chr5.2:64098173-64098192 | MS.gene99093:CDS | 30.0% |
| ! | TCATGTTCTTTTACAACTTC+TGG | - | chr5.2:64097499-64097518 | None:intergenic | 30.0% |
| !! | AGAATGTTTTTGTTGAGTTG+GGG | - | chr5.2:64097395-64097414 | None:intergenic | 30.0% |
| !! | CAGAATGTTTTTGTTGAGTT+GGG | - | chr5.2:64097396-64097415 | None:intergenic | 30.0% |
| !! | TCAGAATGTTTTTGTTGAGT+TGG | - | chr5.2:64097397-64097416 | None:intergenic | 30.0% |
| !!! | GTTGTTTTTGTTGTTGTTGA+GGG | - | chr5.2:64097449-64097468 | None:intergenic | 30.0% |
| !!! | TGTTGTTTTTGTTGTTGTTG+AGG | - | chr5.2:64097450-64097469 | None:intergenic | 30.0% |
| AAGCTTTCTTTGGTGAATTC+CGG | - | chr5.2:64097969-64097988 | None:intergenic | 35.0% | |
| AAGTATGTGACTGTTAAGAG+AGG | + | chr5.2:64099602-64099621 | MS.gene99093:CDS | 35.0% | |
| AATAGTTTCACTGTGAGTAG+TGG | + | chr5.2:64099662-64099681 | MS.gene99093:CDS | 35.0% | |
| ACATTGTGTTGAACAGTGAA+AGG | - | chr5.2:64097604-64097623 | None:intergenic | 35.0% | |
| AGCAGAGTTACTATGGAAAA+GGG | + | chr5.2:64099161-64099180 | MS.gene99093:CDS | 35.0% | |
| AGTTCAGAACAAAGGCAAAA+AGG | + | chr5.2:64098500-64098519 | MS.gene99093:CDS | 35.0% | |
| ATCAAGAGTTTGAGCTTCAA+TGG | + | chr5.2:64098771-64098790 | MS.gene99093:intron | 35.0% | |
| ATGAACAGAAGAGAGTTCAT+GGG | + | chr5.2:64097887-64097906 | MS.gene99093:CDS | 35.0% | |
| CAACAAGTTCAACTTTCTCT+AGG | + | chr5.2:64099489-64099508 | MS.gene99093:CDS | 35.0% | |
| CAATGGAACATTTGTTCTTC+TGG | + | chr5.2:64099692-64099711 | MS.gene99093:CDS | 35.0% | |
| CTAAGAGGGTTTCTTCTATA+AGG | - | chr5.2:64098420-64098439 | None:intergenic | 35.0% | |
| CTTCTTCTTCTTCTAATGGA+AGG | + | chr5.2:64097986-64098005 | MS.gene99093:CDS | 35.0% | |
| GAAGAAGAAGAAGCTTTCTT+TGG | - | chr5.2:64097979-64097998 | None:intergenic | 35.0% | |
| GATAAAAGTAACAATGGTGG+AGG | + | chr5.2:64098195-64098214 | MS.gene99093:CDS | 35.0% | |
| GATAACAGTGAGGAATATGA+TGG | + | chr5.2:64097913-64097932 | MS.gene99093:CDS | 35.0% | |
| GATTGAAGTTGAGACTATTC+AGG | + | chr5.2:64098524-64098543 | MS.gene99093:CDS | 35.0% | |
| GGAAACAAAGTTCAGAACAA+AGG | + | chr5.2:64098492-64098511 | MS.gene99093:CDS | 35.0% | |
| GGAAGAAGATCATCTGAAAA+TGG | + | chr5.2:64098078-64098097 | MS.gene99093:CDS | 35.0% | |
| GTTCCATCACAACAAAATGA+TGG | + | chr5.2:64097622-64097641 | MS.gene99093:CDS | 35.0% | |
| TAGGATCAACTTCACTAAGA+GGG | - | chr5.2:64098434-64098453 | None:intergenic | 35.0% | |
| TCTTCAGCTAGGAAATATTC+TGG | + | chr5.2:64097805-64097824 | MS.gene99093:CDS | 35.0% | |
| TGTGGATAAGCAAGTGAATT+AGG | - | chr5.2:64098453-64098472 | None:intergenic | 35.0% | |
| TTAGGATCAACTTCACTAAG+AGG | - | chr5.2:64098435-64098454 | None:intergenic | 35.0% | |
| TTGAACAGCAACAATAAGGT+TGG | + | chr5.2:64097673-64097692 | MS.gene99093:CDS | 35.0% | |
| TTGTCCCTCATTTCAACATT+TGG | - | chr5.2:64099122-64099141 | None:intergenic | 35.0% | |
| TTGTTCTTCTGGTGATTCAT+CGG | + | chr5.2:64099703-64099722 | MS.gene99093:CDS | 35.0% | |
| ! | GTTGTGTTGTGTTCTTTTGA+TGG | - | chr5.2:64099397-64099416 | None:intergenic | 35.0% |
| ! | TTTTCAGATGATCTTCTTCC+AGG | - | chr5.2:64098078-64098097 | None:intergenic | 35.0% |
| !! | AAAGTGATTTGGTGGAAGAA+AGG | - | chr5.2:64097366-64097385 | None:intergenic | 35.0% |
| !! | AACCCATCATTTTGTTGTGA+TGG | - | chr5.2:64097628-64097647 | None:intergenic | 35.0% |
| !! | AAGTGATTTGGTGGAAGAAA+GGG | - | chr5.2:64097365-64097384 | None:intergenic | 35.0% |
| !! | AGAGAAAGTTGAACTTGTTG+TGG | - | chr5.2:64099489-64099508 | None:intergenic | 35.0% |
| !! | AGTGAAAGGTGTGATTTTGA+TGG | - | chr5.2:64097590-64097609 | None:intergenic | 35.0% |
| !! | ATCACAACAAAATGATGGGT+TGG | + | chr5.2:64097627-64097646 | MS.gene99093:CDS | 35.0% |
| !!! | GAATGTTTTTGTTGAGTTGG+GGG | - | chr5.2:64097394-64097413 | None:intergenic | 35.0% |
| !!! | GGAAGTTTTGAATGTCTTCA+AGG | - | chr5.2:64099376-64099395 | None:intergenic | 35.0% |
| ACAACAACAGGAAGAGATCA+AGG | + | chr5.2:64099205-64099224 | MS.gene99093:CDS | 40.0% | |
| ACCAATGATGTAACAGTAGC+AGG | - | chr5.2:64098171-64098190 | None:intergenic | 40.0% | |
| AGATTAAGCAGAAGCTCTTC+TGG | + | chr5.2:64097766-64097785 | MS.gene99093:CDS | 40.0% | |
| CAGCAGAGTTACTATGGAAA+AGG | + | chr5.2:64099160-64099179 | MS.gene99093:CDS | 40.0% | |
| CGTTGATCTCTTTCTCTACT+TGG | - | chr5.2:64098021-64098040 | None:intergenic | 40.0% | |
| CTTCTTCTAATGGAAGGAGA+AGG | + | chr5.2:64097992-64098011 | MS.gene99093:CDS | 40.0% | |
| GAAGTATATGAGGTTTGTGG+TGG | - | chr5.2:64099347-64099366 | None:intergenic | 40.0% | |
| GACAAACAGCAGAGTTACTA+TGG | + | chr5.2:64099154-64099173 | MS.gene99093:CDS | 40.0% | |
| GAGTTATTCCTGCTAAGAGA+AGG | - | chr5.2:64098375-64098394 | None:intergenic | 40.0% | |
| GATGAACAGAAGAGAGTTCA+TGG | + | chr5.2:64097886-64097905 | MS.gene99093:CDS | 40.0% | |
| TAAGATCAGCAACAGCTTCA+AGG | - | chr5.2:64099463-64099482 | None:intergenic | 40.0% | |
| TATGTGACTGTTAAGAGAGG+TGG | + | chr5.2:64099605-64099624 | MS.gene99093:CDS | 40.0% | |
| TCCTGCTACTGTTACATCAT+TGG | + | chr5.2:64098167-64098186 | MS.gene99093:CDS | 40.0% | |
| TGAGTAGTGGTCAACAACAA+TGG | + | chr5.2:64099675-64099694 | MS.gene99093:CDS | 40.0% | |
| TTAGCAGGAATAACTCTGCA+AGG | + | chr5.2:64098379-64098398 | MS.gene99093:CDS | 40.0% | |
| ! | TCAACATTTGGTTTCTGCAG+TGG | - | chr5.2:64099110-64099129 | None:intergenic | 40.0% |
| ! | TCTTAATCATCCGGTTCTAG+CGG | - | chr5.2:64098921-64098940 | None:intergenic | 40.0% |
| ! | TGTTGTGAGTGATGATGTGA+TGG | + | chr5.2:64099565-64099584 | MS.gene99093:CDS | 40.0% |
| ! | TTTGGTTTCTGCAGTGGATA+TGG | - | chr5.2:64099104-64099123 | None:intergenic | 40.0% |
| !! | AACAGTAATGGTTCTGGTTC+AGG | + | chr5.2:64098114-64098133 | MS.gene99093:CDS | 40.0% |
| !! | AATAAGGTTGGTAGTGCTGT+TGG | + | chr5.2:64097685-64097704 | MS.gene99093:CDS | 40.0% |
| !! | AGGAATATGATGGTGTTGCT+CGG | + | chr5.2:64097923-64097942 | MS.gene99093:CDS | 40.0% |
| !! | AGTGATTTGGTGGAAGAAAG+GGG | - | chr5.2:64097364-64097383 | None:intergenic | 40.0% |
| !! | ATATGAGGTTTGTGGTGGAT+TGG | - | chr5.2:64099342-64099361 | None:intergenic | 40.0% |
| ACATTCCCATTTCCTCTTGC+AGG | - | chr5.2:64098333-64098352 | None:intergenic | 45.0% | |
| ATCAGCAACAGCTTCAAGGA+TGG | - | chr5.2:64099459-64099478 | None:intergenic | 45.0% | |
| ATCAGCAACCTTCTCTTAGC+AGG | + | chr5.2:64098364-64098383 | MS.gene99093:CDS | 45.0% | |
| ATGTCACCTGCAAGAGGAAA+TGG | + | chr5.2:64098324-64098343 | MS.gene99093:CDS | 45.0% | |
| ATGTCACCTGCTAGAGGAAA+TGG | + | chr5.2:64098270-64098289 | MS.gene99093:CDS | 45.0% | |
| ATTGGTTAGAGGTTCGGGAT+TGG | - | chr5.2:64099324-64099343 | None:intergenic | 45.0% | |
| CAAGCTGGAAGAGAAACAGA+AGG | - | chr5.2:64099419-64099438 | None:intergenic | 45.0% | |
| CATCAGCATAGTGGTGGTAT+TGG | + | chr5.2:64099785-64099804 | MS.gene99093:CDS | 45.0% | |
| CCACACAAAGGAACAACAAC+AGG | + | chr5.2:64099193-64099212 | MS.gene99093:CDS | 45.0% | |
| CTGCTTCTTGTAATCCCAGA+TGG | - | chr5.2:64099269-64099288 | None:intergenic | 45.0% | |
| CTGGTGATTCATCGGATTGT+TGG | + | chr5.2:64099711-64099730 | MS.gene99093:CDS | 45.0% | |
| GAGTGTGATCATCAGCATAG+TGG | + | chr5.2:64099776-64099795 | MS.gene99093:CDS | 45.0% | |
| TCATGGGAGTGATAACAGTG+AGG | + | chr5.2:64097903-64097922 | MS.gene99093:CDS | 45.0% | |
| TGAGGGACAACACAAGAAAC+AGG | + | chr5.2:64099132-64099151 | MS.gene99093:CDS | 45.0% | |
| TGTCACCTGCAAGAGGAAAT+GGG | + | chr5.2:64098325-64098344 | MS.gene99093:CDS | 45.0% | |
| TGTCACCTGCTAGAGGAAAT+GGG | + | chr5.2:64098271-64098290 | MS.gene99093:CDS | 45.0% | |
| TGTGAGGATCAAGAGTCTTC+AGG | + | chr5.2:64099635-64099654 | MS.gene99093:CDS | 45.0% | |
| TGTGATCATCAGCATAGTGG+TGG | + | chr5.2:64099779-64099798 | MS.gene99093:CDS | 45.0% | |
| TTGTACTAGGCCAGGGAAAA+TGG | + | chr5.2:64098137-64098156 | MS.gene99093:CDS | 45.0% | |
| ! | AAGAATGTGGTGATGCCATC+TGG | + | chr5.2:64099251-64099270 | MS.gene99093:CDS | 45.0% |
| ! | AGAATGTGGTGATGCCATCT+GGG | + | chr5.2:64099252-64099271 | MS.gene99093:CDS | 45.0% |
| ! | AGTAACAATGGTGGAGGAGA+AGG | + | chr5.2:64098201-64098220 | MS.gene99093:CDS | 45.0% |
| ! | CCTGTTGTTGTTCCTTTGTG+TGG | - | chr5.2:64099196-64099215 | None:intergenic | 45.0% |
| ! | CTGCTACTTCATCTTCAGCT+AGG | + | chr5.2:64097794-64097813 | MS.gene99093:CDS | 45.0% |
| ! | TGATGGTGCTCAATGCTCAT+AGG | - | chr5.2:64099052-64099071 | None:intergenic | 45.0% |
| !! | CAAGCTTTGTTGAGACAAGC+TGG | - | chr5.2:64099434-64099453 | None:intergenic | 45.0% |
| !! | GTGATTTGGTGGAAGAAAGG+GGG | - | chr5.2:64097363-64097382 | None:intergenic | 45.0% |
| !! | GTTCTGGTTCAGGTTGTACT+AGG | + | chr5.2:64098124-64098143 | MS.gene99093:CDS | 45.0% |
| !! | GTTTGTGGTGGATTGGTTAG+AGG | - | chr5.2:64099335-64099354 | None:intergenic | 45.0% |
| !! | TGGAGGAGAAGGTGTTAAGA+GGG | + | chr5.2:64098212-64098231 | MS.gene99093:CDS | 45.0% |
| !! | TGGTGGATTGGTTAGAGGTT+CGG | - | chr5.2:64099330-64099349 | None:intergenic | 45.0% |
| !!! | TTTTTGTTGAGTTGGGGGTG+TGG | - | chr5.2:64097389-64097408 | None:intergenic | 45.0% |
| CCATTCCCATTTCCTCTAGC+AGG | - | chr5.2:64098279-64098298 | None:intergenic | 50.0% | |
| CCTGCTAGAGGAAATGGGAA+TGG | + | chr5.2:64098276-64098295 | MS.gene99093:CDS | 50.0% | |
| CGTAGAGTGAGTAGATCTCC+TGG | + | chr5.2:64098057-64098076 | MS.gene99093:CDS | 50.0% | |
| CGTTCAATGTCACCTGCAAG+AGG | + | chr5.2:64098318-64098337 | MS.gene99093:CDS | 50.0% | |
| CGTTCAATGTCACCTGCTAG+AGG | + | chr5.2:64098264-64098283 | MS.gene99093:CDS | 50.0% | |
| CTAGCAGGTGACATTGAACG+TGG | - | chr5.2:64098264-64098283 | None:intergenic | 50.0% | |
| GAGAGGTGGTTCACTTTGTG+AGG | + | chr5.2:64099619-64099638 | MS.gene99093:CDS | 50.0% | |
| GGGTGTGAATTGCCACACAA+AGG | + | chr5.2:64099181-64099200 | MS.gene99093:CDS | 50.0% | |
| TTTGGTGAATTCCGGTGACG+CGG | - | chr5.2:64097961-64097980 | None:intergenic | 50.0% | |
| ! | AATCATCCGGTTCTAGCGGA+AGG | - | chr5.2:64098917-64098936 | None:intergenic | 50.0% |
| ! | CATAGTGGTGGTATTGGACG+TGG | + | chr5.2:64099791-64099810 | MS.gene99093:CDS | 50.0% |
| ! | GGAACAGTCACCATTTTCCC+TGG | - | chr5.2:64098150-64098169 | None:intergenic | 50.0% |
| ! | GGGTGTGGAAAGTGATTTGG+TGG | - | chr5.2:64097374-64097393 | None:intergenic | 50.0% |
| ! | TGGGGGTGTGGAAAGTGATT+TGG | - | chr5.2:64097377-64097396 | None:intergenic | 50.0% |
| !! | GGTGGATTGGTTAGAGGTTC+GGG | - | chr5.2:64099329-64099348 | None:intergenic | 50.0% |
| !! | GTGGAGGAGAAGGTGTTAAG+AGG | + | chr5.2:64098211-64098230 | MS.gene99093:CDS | 50.0% |
| !! | GTTCAGGTTGTACTAGGCCA+GGG | + | chr5.2:64098130-64098149 | MS.gene99093:CDS | 50.0% |
| GCTCTCGAGATAGCTCGTCT+AGG | - | chr5.2:64098892-64098911 | None:intergenic | 55.0% | |
| GGTTAGAGGTTCGGGATTGG+TGG | - | chr5.2:64099321-64099340 | None:intergenic | 55.0% | |
| !! | GGTTCAGGTTGTACTAGGCC+AGG | + | chr5.2:64098129-64098148 | MS.gene99093:CDS | 55.0% |
| ATAACCACCGTCCGCGTCAC+CGG | + | chr5.2:64097947-64097966 | MS.gene99093:CDS | 60.0% | |
| GAGCCTCCTTCCGCTAGAAC+CGG | + | chr5.2:64098908-64098927 | MS.gene99093:intron | 60.0% | |
| GTGAATTCCGGTGACGCGGA+CGG | - | chr5.2:64097957-64097976 | None:intergenic | 60.0% | |
| ! | CATCCGGTTCTAGCGGAAGG+AGG | - | chr5.2:64098914-64098933 | None:intergenic | 60.0% |
| ! | GGAAGAAAGGGGGTGTGAGG+AGG | - | chr5.2:64097353-64097372 | None:intergenic | 60.0% |
| ! | GGTGGAAGAAAGGGGGTGTG+AGG | - | chr5.2:64097356-64097375 | None:intergenic | 60.0% |
| AATTCCGGTGACGCGGACGG+TGG | - | chr5.2:64097954-64097973 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 64097307 | 64099838 | 64097307 | ID=MS.gene99093 |
| chr5.2 | mRNA | 64097307 | 64099838 | 64097307 | ID=MS.gene99093.t1;Parent=MS.gene99093 |
| chr5.2 | exon | 64097307 | 64098545 | 64097307 | ID=MS.gene99093.t1.exon1;Parent=MS.gene99093.t1 |
| chr5.2 | CDS | 64097307 | 64098545 | 64097307 | ID=cds.MS.gene99093.t1;Parent=MS.gene99093.t1 |
| chr5.2 | exon | 64099116 | 64099838 | 64099116 | ID=MS.gene99093.t1.exon2;Parent=MS.gene99093.t1 |
| chr5.2 | CDS | 64099116 | 64099838 | 64099116 | ID=cds.MS.gene99093.t1;Parent=MS.gene99093.t1 |
| Gene Sequence |
| Protein sequence |
