Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66288.t1 | XP_013453257.1 | 90.8 | 812 | 39 | 4 | 1 | 778 | 1 | 810 | 0.00E+00 | 1404.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66288.t1 | F4IK92 | 38.8 | 825 | 436 | 19 | 1 | 778 | 14 | 816 | 4.3e-128 | 460.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66288.t1 | A0A072UCW5 | 90.8 | 812 | 39 | 4 | 1 | 778 | 1 | 810 | 0.0e+00 | 1404.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049397 | MS.gene66288 | 0.813428 | 2.57E-51 | -1.69E-46 |
| MS.gene049418 | MS.gene66288 | 0.807183 | 5.73E-50 | -1.69E-46 |
| MS.gene049622 | MS.gene66288 | 0.800289 | 1.55E-48 | -1.69E-46 |
| MS.gene04985 | MS.gene66288 | 0.800152 | 1.65E-48 | -1.69E-46 |
| MS.gene049989 | MS.gene66288 | 0.892263 | 1.86E-74 | -1.69E-46 |
| MS.gene050297 | MS.gene66288 | 0.876188 | 1.70E-68 | -1.69E-46 |
| MS.gene050310 | MS.gene66288 | 0.806015 | 1.01E-49 | -1.69E-46 |
| MS.gene050648 | MS.gene66288 | 0.834701 | 2.57E-56 | -1.69E-46 |
| MS.gene051067 | MS.gene66288 | 0.800265 | 1.56E-48 | -1.69E-46 |
| MS.gene051094 | MS.gene66288 | 0.837232 | 5.87E-57 | -1.69E-46 |
| MS.gene051263 | MS.gene66288 | 0.84524 | 4.59E-59 | -1.69E-46 |
| MS.gene051629 | MS.gene66288 | 0.856918 | 2.32E-62 | -1.69E-46 |
| MS.gene052041 | MS.gene66288 | 0.807301 | 5.40E-50 | -1.69E-46 |
| MS.gene052367 | MS.gene66288 | 0.833282 | 5.83E-56 | -1.69E-46 |
| MS.gene053416 | MS.gene66288 | 0.839295 | 1.73E-57 | -1.69E-46 |
| MS.gene053417 | MS.gene66288 | 0.840113 | 1.06E-57 | -1.69E-46 |
| MS.gene053929 | MS.gene66288 | 0.822105 | 2.83E-53 | -1.69E-46 |
| MS.gene055957 | MS.gene66288 | 0.854467 | 1.21E-61 | -1.69E-46 |
| MS.gene056041 | MS.gene66288 | 0.835931 | 1.26E-56 | -1.69E-46 |
| MS.gene056042 | MS.gene66288 | 0.84407 | 9.49E-59 | -1.69E-46 |
| MS.gene056228 | MS.gene66288 | 0.834352 | 3.15E-56 | -1.69E-46 |
| MS.gene056335 | MS.gene66288 | 0.803018 | 4.26E-49 | -1.69E-46 |
| MS.gene056526 | MS.gene66288 | 0.830393 | 3.01E-55 | -1.69E-46 |
| MS.gene058196 | MS.gene66288 | 0.83535 | 1.77E-56 | -1.69E-46 |
| MS.gene058197 | MS.gene66288 | 0.85944 | 4.13E-63 | -1.69E-46 |
| MS.gene058198 | MS.gene66288 | 0.86049 | 1.99E-63 | -1.69E-46 |
| MS.gene059300 | MS.gene66288 | 0.879187 | 1.53E-69 | -1.69E-46 |
| MS.gene060473 | MS.gene66288 | 0.850925 | 1.24E-60 | -1.69E-46 |
| MS.gene060565 | MS.gene66288 | 0.858317 | 8.95E-63 | -1.69E-46 |
| MS.gene06057 | MS.gene66288 | 0.867748 | 1.09E-65 | -1.69E-46 |
| MS.gene061099 | MS.gene66288 | 0.807952 | 3.93E-50 | -1.69E-46 |
| MS.gene061260 | MS.gene66288 | 0.832299 | 1.02E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66288.t1 | MTR_6g093150 | 90.764 | 812 | 39 | 4 | 1 | 778 | 1 | 810 | 0.0 | 1498 |
| MS.gene66288.t1 | MTR_6g093150 | 93.056 | 576 | 33 | 3 | 208 | 778 | 80 | 653 | 0.0 | 1098 |
| MS.gene66288.t1 | MTR_3g050060 | 24.064 | 881 | 503 | 21 | 12 | 753 | 27 | 880 | 1.90e-56 | 209 |
| MS.gene66288.t1 | MTR_3g050060 | 23.523 | 880 | 520 | 21 | 12 | 753 | 27 | 891 | 2.57e-55 | 205 |
| MS.gene66288.t1 | MTR_4g107110 | 32.042 | 284 | 159 | 2 | 7 | 261 | 1 | 279 | 6.38e-38 | 148 |
| MS.gene66288.t1 | MTR_4g107110 | 32.042 | 284 | 159 | 2 | 7 | 261 | 1 | 279 | 2.57e-37 | 148 |
| MS.gene66288.t1 | MTR_5g036950 | 25.709 | 564 | 326 | 15 | 13 | 527 | 22 | 541 | 8.16e-35 | 142 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66288.t1 | AT2G07170 | 39.755 | 815 | 421 | 18 | 11 | 778 | 25 | 816 | 1.14e-167 | 504 |
| MS.gene66288.t1 | AT1G27210 | 28.439 | 538 | 308 | 14 | 12 | 519 | 34 | 524 | 3.32e-41 | 160 |
| MS.gene66288.t1 | AT4G27060 | 32.313 | 294 | 163 | 5 | 12 | 270 | 41 | 333 | 3.46e-40 | 159 |
| MS.gene66288.t1 | AT4G27060 | 21.703 | 364 | 223 | 13 | 465 | 778 | 504 | 855 | 1.22e-16 | 85.1 |
| MS.gene66288.t1 | AT1G50890 | 29.167 | 288 | 166 | 6 | 12 | 262 | 36 | 322 | 8.13e-36 | 145 |
| MS.gene66288.t1 | AT1G50890 | 25.000 | 264 | 181 | 7 | 472 | 728 | 503 | 756 | 1.43e-14 | 78.6 |
| MS.gene66288.t1 | AT1G59850 | 30.142 | 282 | 161 | 3 | 12 | 262 | 21 | 297 | 1.95e-31 | 129 |
| MS.gene66288.t1 | AT5G62580 | 27.178 | 287 | 166 | 5 | 14 | 261 | 7 | 289 | 7.35e-27 | 117 |
| MS.gene66288.t1 | AT5G62580 | 27.178 | 287 | 166 | 5 | 14 | 261 | 7 | 289 | 7.35e-27 | 117 |
Find 150 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCGTTCTTGTCATCTTTA+AGG | 0.084954 | 6.4:-63693923 | MS.gene66288:CDS |
| TTTAGGATCCTGCATCTTTA+TGG | 0.153457 | 6.4:+63692898 | None:intergenic |
| AAATTATCCTCTCTGACTTT+TGG | 0.155108 | 6.4:+63692011 | None:intergenic |
| TTGGCTCTGCCTCACAAATT+TGG | 0.181166 | 6.4:+63692223 | None:intergenic |
| CACAACATTGATGTGTAATT+TGG | 0.196160 | 6.4:+63692843 | None:intergenic |
| AACAACCGCAGCAACAATTT+TGG | 0.226264 | 6.4:+63694401 | None:intergenic |
| ATGGATAAACTTTCTATAAC+TGG | 0.262628 | 6.4:+63691750 | None:intergenic |
| TCCTGGGAGAAGCGACATTT+TGG | 0.275170 | 6.4:+63692204 | None:intergenic |
| GTTGAATAGGTGTATTATTC+AGG | 0.277892 | 6.4:-63694076 | MS.gene66288:CDS |
| GGTGAAAAGTAGTGAAAGTT+TGG | 0.278968 | 6.4:-63692120 | MS.gene66288:CDS |
| CAGGATGTGGGTTATGAATA+TGG | 0.288308 | 6.4:-63693076 | MS.gene66288:CDS |
| TTCGTTCTTGTCATCTTTAA+GGG | 0.289104 | 6.4:-63693922 | MS.gene66288:CDS |
| TTATCTCAAGAATCTTTAAA+AGG | 0.289916 | 6.4:-63692272 | MS.gene66288:CDS |
| TAAATATTGGAAAATGCTTC+CGG | 0.292412 | 6.4:-63693718 | MS.gene66288:CDS |
| ACAACATTGATGTGTAATTT+GGG | 0.297728 | 6.4:+63692844 | None:intergenic |
| TACTCTCAAACTCTTCATTA+TGG | 0.299131 | 6.4:+63693149 | None:intergenic |
| CTGCTGCAGCCATGGGATTA+TGG | 0.311128 | 6.4:+63691662 | None:intergenic |
| CACTTTAGCACCGTATCTTC+TGG | 0.313958 | 6.4:-63691703 | MS.gene66288:CDS |
| AACGGTTTGCTTCTCACATT+TGG | 0.314748 | 6.4:+63692956 | None:intergenic |
| AGATCTAAACTCTGCATATA+TGG | 0.315587 | 6.4:-63691829 | MS.gene66288:CDS |
| AACGTGCCAATCATCTCTTT+TGG | 0.320011 | 6.4:+63693210 | None:intergenic |
| ATTGAAAGAGCAATGCAATT+TGG | 0.320218 | 6.4:+63691212 | None:intergenic |
| CAATAAAATTACATCATATC+TGG | 0.334865 | 6.4:-63691097 | MS.gene66288:CDS |
| CCAACAAGAGCATCGAAAAT+AGG | 0.336403 | 6.4:+63694258 | None:intergenic |
| GAGAATTGTTTCGAGTTCTT+TGG | 0.336737 | 6.4:+63694572 | None:intergenic |
| CACGCGGAATCCTCCTGTTT+CGG | 0.343898 | 6.4:-63694175 | MS.gene66288:CDS |
| TGTGAGAAGCAAACCGTTAG+AGG | 0.344735 | 6.4:-63692951 | MS.gene66288:CDS |
| CTAGTTTCTGAAGATGGCTT+TGG | 0.352507 | 6.4:+63692167 | None:intergenic |
| CCAAGCCTACCATTCTTGAT+TGG | 0.357127 | 6.4:+63692312 | None:intergenic |
| ACTACCGAGCCTTCAGAAAC+TGG | 0.367334 | 6.4:-63693687 | MS.gene66288:CDS |
| AAACATGATGCATCAGTTAC+AGG | 0.369760 | 6.4:-63692756 | MS.gene66288:intron |
| TTCCACTACAGAATGTGTTC+TGG | 0.378816 | 6.4:+63693174 | None:intergenic |
| AGGATAATTTGAACTGCTTA+GGG | 0.382496 | 6.4:-63691998 | MS.gene66288:CDS |
| GAGGATAATTTGAACTGCTT+AGG | 0.390712 | 6.4:-63691999 | MS.gene66288:CDS |
| ACCATTTCTAGCATTGGTTC+TGG | 0.391155 | 6.4:+63691911 | None:intergenic |
| GATCGAGACACACACGATAT+CGG | 0.403024 | 6.4:-63694597 | MS.gene66288:CDS |
| TGCGTTGGGACAAATTGCTT+TGG | 0.405945 | 6.4:-63693952 | MS.gene66288:CDS |
| TTAGTACTAGTTTCTGAAGA+TGG | 0.408101 | 6.4:+63692161 | None:intergenic |
| TGGAGTGCATACGGAGATCC+TGG | 0.410874 | 6.4:+63692187 | None:intergenic |
| ATACCATACAAAACCGAAAC+AGG | 0.420721 | 6.4:+63694162 | None:intergenic |
| CCAGTAGTTTGTGTTACTCT+CGG | 0.422069 | 6.4:+63691881 | None:intergenic |
| CAAATGAAATGACTTGTATT+CGG | 0.426495 | 6.4:-63692811 | MS.gene66288:CDS |
| TTCAGATATTGAAATCAAAC+AGG | 0.427865 | 6.4:-63692780 | MS.gene66288:CDS |
| CACAATGCATTAAACAAAGT+TGG | 0.432006 | 6.4:-63694621 | MS.gene66288:CDS |
| TTGCTTCTCACATTTGGCTT+CGG | 0.433575 | 6.4:+63692962 | None:intergenic |
| AAATATTGGAAAATGCTTCC+GGG | 0.434596 | 6.4:-63693717 | MS.gene66288:CDS |
| GAGCCTAACATCTCTATGTC+TGG | 0.437595 | 6.4:+63693321 | None:intergenic |
| CTGCGTTGATTGAGTTGAAT+AGG | 0.437729 | 6.4:-63694089 | MS.gene66288:CDS |
| TATATGGAAGCTTTGTGTTC+CGG | 0.441349 | 6.4:-63691813 | MS.gene66288:CDS |
| ATTACTACTCAGCTTGTTGT+TGG | 0.446978 | 6.4:+63694665 | None:intergenic |
| CCTTCTCTAACAGAAGAATC+TGG | 0.448809 | 6.4:+63694363 | None:intergenic |
| TTCTTGATTGGATTGTAGAA+AGG | 0.451684 | 6.4:+63692324 | None:intergenic |
| AAAGCGGCTTCTGTTGCGTT+GGG | 0.454188 | 6.4:-63693966 | MS.gene66288:intron |
| GCTTTGAAATTAGCGAATCA+AGG | 0.460154 | 6.4:-63694315 | MS.gene66288:CDS |
| AGGAATGAGGAGATGGAATG+TGG | 0.463881 | 6.4:+63694537 | None:intergenic |
| CAGTAGTTTGTGTTACTCTC+GGG | 0.467032 | 6.4:+63691882 | None:intergenic |
| TCCACTACAGAATGTGTTCT+GGG | 0.471821 | 6.4:+63693175 | None:intergenic |
| GAGCAAAGGTAAACCTTTGA+AGG | 0.475464 | 6.4:+63693659 | None:intergenic |
| TCTTGATTGGATTGTAGAAA+GGG | 0.477546 | 6.4:+63692325 | None:intergenic |
| AACTTGCCTGCTGCAGCCAT+GGG | 0.477757 | 6.4:+63691655 | None:intergenic |
| GCAAGAGAGGAATGAGGAGA+TGG | 0.478087 | 6.4:+63694530 | None:intergenic |
| AGGACAACCATTTCTAGCAT+TGG | 0.479539 | 6.4:+63691905 | None:intergenic |
| GAAACTGGATCCTCCTTCAA+AGG | 0.479927 | 6.4:-63693672 | MS.gene66288:intron |
| GAAACTAGTACTAAGCAATC+AGG | 0.487912 | 6.4:-63692152 | MS.gene66288:CDS |
| CATTGTTTACAAAGCAGTCA+TGG | 0.488796 | 6.4:+63692990 | None:intergenic |
| ACATCAATGTTGTGTACAAA+GGG | 0.488994 | 6.4:-63692834 | MS.gene66288:CDS |
| GAACTTGCCTGCTGCAGCCA+TGG | 0.490305 | 6.4:+63691654 | None:intergenic |
| ACTTAATATGAAATCAACTA+CGG | 0.491293 | 6.4:-63693293 | MS.gene66288:CDS |
| AGTCCAGACATAGAGATGTT+AGG | 0.496261 | 6.4:-63693324 | MS.gene66288:CDS |
| CCAATCAAGAATGGTAGGCT+TGG | 0.497219 | 6.4:-63692312 | MS.gene66288:CDS |
| TAAACTTTCTATAACTGGAC+CGG | 0.499508 | 6.4:+63691755 | None:intergenic |
| GCCAAAATGTCGCTTCTCCC+AGG | 0.502514 | 6.4:-63692205 | MS.gene66288:CDS |
| GTCATCCCAAAAGAGATGAT+TGG | 0.502641 | 6.4:-63693216 | MS.gene66288:CDS |
| CATAATCCCATGGCTGCAGC+AGG | 0.504288 | 6.4:-63691661 | MS.gene66288:intron |
| AAAGCATGTCAAAATGATGT+TGG | 0.506304 | 6.4:-63693247 | MS.gene66288:CDS |
| TCTGCTCAAGTGAGAAAGAA+TGG | 0.511359 | 6.4:-63691954 | MS.gene66288:CDS |
| CCGAGAGTAACACAAACTAC+TGG | 0.513150 | 6.4:-63691881 | MS.gene66288:CDS |
| TAAAGCGGCTTCTGTTGCGT+TGG | 0.516425 | 6.4:-63693967 | MS.gene66288:intron |
| GTTGAGCTTCTGAATAAAAC+CGG | 0.517186 | 6.4:-63691774 | MS.gene66288:CDS |
| ACTCATTGTTTGTAGCGGCT+TGG | 0.517709 | 6.4:+63693117 | None:intergenic |
| TGTAAAACCGCATCCCTCAC+TGG | 0.518045 | 6.4:+63693747 | None:intergenic |
| GCCAGAACCAATGCTAGAAA+TGG | 0.519664 | 6.4:-63691912 | MS.gene66288:CDS |
| CAACTTATTACTTCCTCTAA+CGG | 0.520424 | 6.4:+63692938 | None:intergenic |
| CCAGATTCTTCTGTTAGAGA+AGG | 0.522317 | 6.4:-63694363 | MS.gene66288:CDS |
| CACATCAATGTTGTGTACAA+AGG | 0.523686 | 6.4:-63692835 | MS.gene66288:CDS |
| AATAGGTGTATTATTCAGGC+TGG | 0.528873 | 6.4:-63694072 | MS.gene66288:intron |
| TTCTACAATCCAATCAAGAA+TGG | 0.529982 | 6.4:-63692321 | MS.gene66288:CDS |
| TGTTACAAGCATGCAGGATG+TGG | 0.535835 | 6.4:-63693089 | MS.gene66288:CDS |
| AATGTACTCCATAAAGATGC+AGG | 0.536807 | 6.4:-63692906 | MS.gene66288:CDS |
| AAGGAGGATCCAGTTTCTGA+AGG | 0.539883 | 6.4:+63693678 | None:intergenic |
| TGTAATTTGGGGACTTGACT+CGG | 0.540972 | 6.4:+63692856 | None:intergenic |
| CTCCAGCATGAATCCTCGGT+TGG | 0.542014 | 6.4:+63692075 | None:intergenic |
| TGGGCCTATGGATGACAAGC+AGG | 0.545178 | 6.4:-63693056 | MS.gene66288:CDS |
| AACATCTCTATGTCTGGACT+CGG | 0.546866 | 6.4:+63693327 | None:intergenic |
| CATGACTGCTTTGTAAACAA+TGG | 0.547183 | 6.4:-63692989 | MS.gene66288:CDS |
| AGATGGCTTTGGAGTGCATA+CGG | 0.548202 | 6.4:+63692178 | None:intergenic |
| GGGTTATGAATATGGGCCTA+TGG | 0.549080 | 6.4:-63693068 | MS.gene66288:CDS |
| GAATCAAGGTAATGAAGATA+AGG | 0.552496 | 6.4:-63694301 | MS.gene66288:CDS |
| ATTGTTTACAAAGCAGTCAT+GGG | 0.553394 | 6.4:+63692991 | None:intergenic |
| CTTAATATGAAATCAACTAC+GGG | 0.555405 | 6.4:-63693292 | MS.gene66288:CDS |
| CTATCTCCAGCATGAATCCT+CGG | 0.562259 | 6.4:+63692071 | None:intergenic |
| TCTCAAGAATCTTTAAAAGG+AGG | 0.564666 | 6.4:-63692269 | MS.gene66288:CDS |
| AGCATTGGTTCTGGCAGCAG+AGG | 0.565867 | 6.4:+63691920 | None:intergenic |
| CAGAAAACTCCAAATTTGTG+AGG | 0.569734 | 6.4:-63692232 | MS.gene66288:CDS |
| ACAATCCAATCAAGAATGGT+AGG | 0.573841 | 6.4:-63692317 | MS.gene66288:CDS |
| GCAGGTTTCGCCATAAAATG+TGG | 0.574624 | 6.4:+63694108 | None:intergenic |
| AGGATGTGGGTTATGAATAT+GGG | 0.575148 | 6.4:-63693075 | MS.gene66288:CDS |
| AGCCAACCGAGGATTCATGC+TGG | 0.584954 | 6.4:-63692077 | MS.gene66288:CDS |
| TGATTCCTCGAGGTTTGACA+AGG | 0.586369 | 6.4:-63693880 | MS.gene66288:intron |
| GGATCCAGTTTCTGAAGGCT+CGG | 0.586766 | 6.4:+63693683 | None:intergenic |
| AGGTTGTATTGAAATGTTCG+CGG | 0.587532 | 6.4:-63694343 | MS.gene66288:CDS |
| TTCATTCTCTTGATTCCTCG+AGG | 0.588058 | 6.4:-63693890 | MS.gene66288:CDS |
| CAATGCAATTTGGTCCGTGA+CGG | 0.598663 | 6.4:+63691222 | None:intergenic |
| GAGAATGCAAGAGAGGAATG+AGG | 0.599531 | 6.4:+63694524 | None:intergenic |
| TCAAGACTCATTGTTTGTAG+CGG | 0.603027 | 6.4:+63693112 | None:intergenic |
| ATCTCTATGTCTGGACTCGG+TGG | 0.603533 | 6.4:+63693330 | None:intergenic |
| AACGAGAATAAGTTCGTCAC+CGG | 0.604731 | 6.4:+63691794 | None:intergenic |
| GGAGTGCATACGGAGATCCT+GGG | 0.608022 | 6.4:+63692188 | None:intergenic |
| CCCCAGAACACATTCTGTAG+TGG | 0.608984 | 6.4:-63693176 | MS.gene66288:CDS |
| CAACATTGATGTGTAATTTG+GGG | 0.611777 | 6.4:+63692845 | None:intergenic |
| TTAGCACCGTATCTTCTGGA+AGG | 0.614062 | 6.4:-63691699 | MS.gene66288:CDS |
| GGTGAAACCAGTGAGGGATG+CGG | 0.615202 | 6.4:-63693754 | MS.gene66288:CDS |
| GGATAATTTGAACTGCTTAG+GGG | 0.616156 | 6.4:-63691997 | MS.gene66288:CDS |
| GATTCATGCTGGAGATAGTG+TGG | 0.617649 | 6.4:-63692066 | MS.gene66288:CDS |
| TAATTTGAACTGCTTAGGGG+AGG | 0.618224 | 6.4:-63691994 | MS.gene66288:CDS |
| TCTCACCAAAATTGTTGCTG+CGG | 0.626501 | 6.4:-63694406 | MS.gene66288:CDS |
| GGATATGTGTAAAAGTTACA+AGG | 0.626865 | 6.4:-63692045 | MS.gene66288:CDS |
| ATATGAAATCAACTACGGGA+AGG | 0.627700 | 6.4:-63693288 | MS.gene66288:CDS |
| GAATGTCGAGAATGCAAGAG+AGG | 0.629620 | 6.4:+63694517 | None:intergenic |
| GGCTCGGTAGTATAATGACC+CGG | 0.630775 | 6.4:+63693699 | None:intergenic |
| CACTCCTGCTTGTCATCCAT+AGG | 0.633163 | 6.4:+63693052 | None:intergenic |
| TGGAATGTGGAGTTAATGAG+TGG | 0.637506 | 6.4:+63694550 | None:intergenic |
| TCTTGATGTTACAAGCATGC+AGG | 0.641520 | 6.4:-63693095 | MS.gene66288:CDS |
| TAGTTTGTGTTACTCTCGGG+AGG | 0.642716 | 6.4:+63691885 | None:intergenic |
| TGTTGAAATGAGCACCGTCA+CGG | 0.647954 | 6.4:-63691236 | MS.gene66288:intron |
| TATAAGAGATTCATAAACAG+TGG | 0.652703 | 6.4:+63694437 | None:intergenic |
| ATTATAGGTGAAACCAGTGA+GGG | 0.652743 | 6.4:-63693760 | MS.gene66288:intron |
| CAAAGGTAAACCTTTGAAGG+AGG | 0.653235 | 6.4:+63693662 | None:intergenic |
| CTGGTATTGTACAAAACACG+CGG | 0.655159 | 6.4:-63694191 | MS.gene66288:CDS |
| CTATTCAACTCAATCAACGC+AGG | 0.655568 | 6.4:+63694090 | None:intergenic |
| TCTACAGAAAATATCTGCGG+AGG | 0.664334 | 6.4:-63693385 | MS.gene66288:intron |
| CCATACAAAACCGAAACAGG+AGG | 0.673672 | 6.4:+63694165 | None:intergenic |
| GTTACAAGCATGCAGGATGT+GGG | 0.676382 | 6.4:-63693088 | MS.gene66288:CDS |
| TATCTGCGGAGGTGACTCTG+TGG | 0.685008 | 6.4:-63693374 | MS.gene66288:CDS |
| CTTTCTACAGAAAATATCTG+CGG | 0.688105 | 6.4:-63693388 | MS.gene66288:intron |
| GACTGCCCCAAAAGTCAGAG+AGG | 0.694271 | 6.4:-63692018 | MS.gene66288:CDS |
| GATTATAGGTGAAACCAGTG+AGG | 0.696142 | 6.4:-63693761 | MS.gene66288:intron |
| CCACTACAGAATGTGTTCTG+GGG | 0.711381 | 6.4:+63693176 | None:intergenic |
| GTGAATCGTCTTGTATGTGA+AGG | 0.716670 | 6.4:-63691852 | MS.gene66288:CDS |
| AATCACCTTGTCAAACCTCG+AGG | 0.724129 | 6.4:+63693875 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTGAAAAATAACTAATTA+AGG | - | chr6.4:63694193-63694212 | MS.gene66288:CDS | 10.0% |
| !! | ATATATTAATAATCGATTAT+AGG | - | chr6.4:63691993-63692012 | MS.gene66288:CDS | 10.0% |
| !! | TACACTTATAATTTAGTTAA+CGG | + | chr6.4:63691974-63691993 | None:intergenic | 15.0% |
| !!! | AATATGAATATTGTAACTTT+TGG | - | chr6.4:63693290-63693309 | MS.gene66288:CDS | 15.0% |
| !!! | TAATTTTTATTTTCTTCTGA+TGG | - | chr6.4:63694315-63694334 | MS.gene66288:CDS | 15.0% |
| !!! | TTGATTTCATATTAAGTTTT+TGG | + | chr6.4:63692472-63692491 | None:intergenic | 15.0% |
| !! | ACTTAATATGAAATCAACTA+CGG | - | chr6.4:63692475-63692494 | MS.gene66288:intron | 20.0% |
| !! | AGGATATATATAAAGACATT+TGG | - | chr6.4:63692182-63692201 | MS.gene66288:CDS | 20.0% |
| !! | CAATAAAATTACATCATATC+TGG | - | chr6.4:63694671-63694690 | MS.gene66288:CDS | 20.0% |
| !! | GATATCAAAATTCAAAAAGA+GGG | + | chr6.4:63692140-63692159 | None:intergenic | 20.0% |
| !! | TGATATCAAAATTCAAAAAG+AGG | + | chr6.4:63692141-63692160 | None:intergenic | 20.0% |
| !! | TTATCTCAAGAATCTTTAAA+AGG | - | chr6.4:63693496-63693515 | MS.gene66288:intron | 20.0% |
| !! | TTTGATATCAATATTGCTAT+TGG | - | chr6.4:63692151-63692170 | MS.gene66288:CDS | 20.0% |
| !!! | TTTTACAAGCTCTTAAATAT+TGG | - | chr6.4:63692037-63692056 | MS.gene66288:CDS | 20.0% |
| ! | AAACAAGAACACTATCTAAT+TGG | + | chr6.4:63692222-63692241 | None:intergenic | 25.0% |
| ! | AACAAGAACACTATCTAATT+GGG | + | chr6.4:63692221-63692240 | None:intergenic | 25.0% |
| ! | ACAACATTGATGTGTAATTT+GGG | + | chr6.4:63692927-63692946 | None:intergenic | 25.0% |
| ! | ATAAATGAGCTACTGTATAT+CGG | + | chr6.4:63693113-63693132 | None:intergenic | 25.0% |
| ! | ATGGATAAACTTTCTATAAC+TGG | + | chr6.4:63694021-63694040 | None:intergenic | 25.0% |
| ! | CTTAATATGAAATCAACTAC+GGG | - | chr6.4:63692476-63692495 | MS.gene66288:intron | 25.0% |
| ! | GTTAAACAATTTAATAACCC+AGG | + | chr6.4:63694409-63694428 | None:intergenic | 25.0% |
| ! | TAAATATTGGAAAATGCTTC+CGG | - | chr6.4:63692050-63692069 | MS.gene66288:CDS | 25.0% |
| ! | TATAAGAGATTCATAAACAG+TGG | + | chr6.4:63691334-63691353 | None:intergenic | 25.0% |
| ! | TGATTGCTAATCTTATACAT+TGG | - | chr6.4:63692329-63692348 | MS.gene66288:CDS | 25.0% |
| ! | TTCAGATATTGAAATCAAAC+AGG | - | chr6.4:63692988-63693007 | MS.gene66288:CDS | 25.0% |
| !! | AATGCTTTGAATACCATTTA+AGG | + | chr6.4:63694256-63694275 | None:intergenic | 25.0% |
| !! | ATATCAATATTGCTATTGGT+TGG | - | chr6.4:63692155-63692174 | MS.gene66288:CDS | 25.0% |
| !! | CAAATGAAATGACTTGTATT+CGG | - | chr6.4:63692957-63692976 | MS.gene66288:CDS | 25.0% |
| !! | TGGAAAAAAGATCATTTTCA+AGG | - | chr6.4:63693668-63693687 | MS.gene66288:intron | 25.0% |
| !! | TTTGAGAGATTGTTTTCTAA+TGG | + | chr6.4:63691295-63691314 | None:intergenic | 25.0% |
| !!! | AAATTTGGAGTTTTCTGAAA+AGG | + | chr6.4:63693533-63693552 | None:intergenic | 25.0% |
| !!! | ATCATTGATAATGCAAATGT+AGG | - | chr6.4:63694430-63694449 | MS.gene66288:CDS | 25.0% |
| !!! | ATGTTAGTCTTTCTTGTTTT+AGG | - | chr6.4:63694508-63694527 | MS.gene66288:CDS | 25.0% |
| !!! | CTTTTTCAGATTTTTACAAC+TGG | - | chr6.4:63693409-63693428 | MS.gene66288:intron | 25.0% |
| !!! | TTTTGTATGGTATGTTGATT+AGG | - | chr6.4:63691616-63691635 | MS.gene66288:intron | 25.0% |
| AAAGCATGTCAAAATGATGT+TGG | - | chr6.4:63692521-63692540 | MS.gene66288:intron | 30.0% | |
| AAATAACTGATATACTTCCC+AGG | + | chr6.4:63694488-63694507 | None:intergenic | 30.0% | |
| AAATATTGGAAAATGCTTCC+GGG | - | chr6.4:63692051-63692070 | MS.gene66288:CDS | 30.0% | |
| ACATCAATGTTGTGTACAAA+GGG | - | chr6.4:63692934-63692953 | MS.gene66288:CDS | 30.0% | |
| AGATCTAAACTCTGCATATA+TGG | - | chr6.4:63693939-63693958 | MS.gene66288:CDS | 30.0% | |
| AGGATAATTTGAACTGCTTA+GGG | - | chr6.4:63693770-63693789 | MS.gene66288:intron | 30.0% | |
| ATTGAAAGAGCAATGCAATT+TGG | + | chr6.4:63694559-63694578 | None:intergenic | 30.0% | |
| ATTGTTTACAAAGCAGTCAT+GGG | + | chr6.4:63692780-63692799 | None:intergenic | 30.0% | |
| CAACATTGATGTGTAATTTG+GGG | + | chr6.4:63692926-63692945 | None:intergenic | 30.0% | |
| CAACTTATTACTTCCTCTAA+CGG | + | chr6.4:63692833-63692852 | None:intergenic | 30.0% | |
| CACAACATTGATGTGTAATT+TGG | + | chr6.4:63692928-63692947 | None:intergenic | 30.0% | |
| CACAATGCATTAAACAAAGT+TGG | - | chr6.4:63691147-63691166 | MS.gene66288:CDS | 30.0% | |
| CTTTCTACAGAAAATATCTG+CGG | - | chr6.4:63692380-63692399 | MS.gene66288:intron | 30.0% | |
| GAATCAAGGTAATGAAGATA+AGG | - | chr6.4:63691467-63691486 | MS.gene66288:intron | 30.0% | |
| GGATATGTGTAAAAGTTACA+AGG | - | chr6.4:63693723-63693742 | MS.gene66288:CDS | 30.0% | |
| GTTGAATAGGTGTATTATTC+AGG | - | chr6.4:63691692-63691711 | MS.gene66288:CDS | 30.0% | |
| TAAACTTTCTATAACTGGAC+CGG | + | chr6.4:63694016-63694035 | None:intergenic | 30.0% | |
| TACTCTCAAACTCTTCATTA+TGG | + | chr6.4:63692622-63692641 | None:intergenic | 30.0% | |
| TCTTGATTGGATTGTAGAAA+GGG | + | chr6.4:63693446-63693465 | None:intergenic | 30.0% | |
| TTCGTTCTTGTCATCTTTAA+GGG | - | chr6.4:63691846-63691865 | MS.gene66288:CDS | 30.0% | |
| TTCTACAATCCAATCAAGAA+TGG | - | chr6.4:63693447-63693466 | MS.gene66288:intron | 30.0% | |
| TTCTTGATTGGATTGTAGAA+AGG | + | chr6.4:63693447-63693466 | None:intergenic | 30.0% | |
| ! | AAATTATCCTCTCTGACTTT+TGG | + | chr6.4:63693760-63693779 | None:intergenic | 30.0% |
| ! | AAGAACATTGACAGTTTTCA+TGG | + | chr6.4:63694040-63694059 | None:intergenic | 30.0% |
| ! | AATTATCCTCTCTGACTTTT+GGG | + | chr6.4:63693759-63693778 | None:intergenic | 30.0% |
| ! | AGAGATTGTTTTCTAATGGA+AGG | + | chr6.4:63691291-63691310 | None:intergenic | 30.0% |
| ! | ATTGTATTTTTCACATGGCA+TGG | + | chr6.4:63694354-63694373 | None:intergenic | 30.0% |
| ! | ATTTGAAGTAATGTCCGAAA+TGG | - | chr6.4:63693332-63693351 | MS.gene66288:CDS | 30.0% |
| ! | ATTTTTCCTTCCAGAAGATA+CGG | + | chr6.4:63694078-63694097 | None:intergenic | 30.0% |
| ! | GATTTTTACAACTGGCATAA+TGG | - | chr6.4:63693417-63693436 | MS.gene66288:intron | 30.0% |
| ! | GCTTAAGAATCCACATTTTA+TGG | - | chr6.4:63691650-63691669 | MS.gene66288:intron | 30.0% |
| ! | GCTTTTATATGCAATTCAAG+AGG | - | chr6.4:63694594-63694613 | MS.gene66288:CDS | 30.0% |
| ! | TATTGCTATTGGTTGGAATA+AGG | - | chr6.4:63692162-63692181 | MS.gene66288:CDS | 30.0% |
| ! | TCTCAAGAATCTTTAAAAGG+AGG | - | chr6.4:63693499-63693518 | MS.gene66288:intron | 30.0% |
| ! | TGCACATTGTATTTTTCACA+TGG | + | chr6.4:63694359-63694378 | None:intergenic | 30.0% |
| ! | TGCGGTTGTTAAATGTTTTA+GGG | - | chr6.4:63691380-63691399 | MS.gene66288:intron | 30.0% |
| ! | TTAGTACTAGTTTCTGAAGA+TGG | + | chr6.4:63693610-63693629 | None:intergenic | 30.0% |
| ! | TTTTCAATACCATAATCCCA+TGG | - | chr6.4:63694097-63694116 | MS.gene66288:CDS | 30.0% |
| !!! | TCTAATGGAAGGTTTTAGTT+CGG | + | chr6.4:63691280-63691299 | None:intergenic | 30.0% |
| AAACATGATGCATCAGTTAC+AGG | - | chr6.4:63693012-63693031 | MS.gene66288:CDS | 35.0% | |
| AATAGGTGTATTATTCAGGC+TGG | - | chr6.4:63691696-63691715 | MS.gene66288:CDS | 35.0% | |
| AATATATACCACATACCGTG+TGG | + | chr6.4:63693369-63693388 | None:intergenic | 35.0% | |
| AATGTACTCCATAAAGATGC+AGG | - | chr6.4:63692862-63692881 | MS.gene66288:CDS | 35.0% | |
| ACAATCCAATCAAGAATGGT+AGG | - | chr6.4:63693451-63693470 | MS.gene66288:intron | 35.0% | |
| AGGTTGTATTGAAATGTTCG+CGG | - | chr6.4:63691425-63691444 | MS.gene66288:intron | 35.0% | |
| ATACCATACAAAACCGAAAC+AGG | + | chr6.4:63691609-63691628 | None:intergenic | 35.0% | |
| ATATGAAATCAACTACGGGA+AGG | - | chr6.4:63692480-63692499 | MS.gene66288:intron | 35.0% | |
| ATTATAGGTGAAACCAGTGA+GGG | - | chr6.4:63692008-63692027 | MS.gene66288:CDS | 35.0% | |
| CACATCAATGTTGTGTACAA+AGG | - | chr6.4:63692933-63692952 | MS.gene66288:CDS | 35.0% | |
| CAGAAAACTCCAAATTTGTG+AGG | - | chr6.4:63693536-63693555 | MS.gene66288:intron | 35.0% | |
| CATGACTGCTTTGTAAACAA+TGG | - | chr6.4:63692779-63692798 | MS.gene66288:CDS | 35.0% | |
| CATTGTTTACAAAGCAGTCA+TGG | + | chr6.4:63692781-63692800 | None:intergenic | 35.0% | |
| CTTCGTTCTTGTCATCTTTA+AGG | - | chr6.4:63691845-63691864 | MS.gene66288:CDS | 35.0% | |
| GAAACTAGTACTAAGCAATC+AGG | - | chr6.4:63693616-63693635 | MS.gene66288:intron | 35.0% | |
| GAGGATAATTTGAACTGCTT+AGG | - | chr6.4:63693769-63693788 | MS.gene66288:intron | 35.0% | |
| GATATACTTCCCAGGTTATT+CGG | + | chr6.4:63694480-63694499 | None:intergenic | 35.0% | |
| GATTGGAAAACACGTTAAAG+CGG | - | chr6.4:63691786-63691805 | MS.gene66288:CDS | 35.0% | |
| GGATAATTTGAACTGCTTAG+GGG | - | chr6.4:63693771-63693790 | MS.gene66288:intron | 35.0% | |
| GGTGAAAAGTAGTGAAAGTT+TGG | - | chr6.4:63693648-63693667 | MS.gene66288:intron | 35.0% | |
| GTTGAGCTTCTGAATAAAAC+CGG | - | chr6.4:63693994-63694013 | MS.gene66288:intron | 35.0% | |
| TAGAGAGGGTTTGAAAGATA+CGG | - | chr6.4:63691764-63691783 | MS.gene66288:CDS | 35.0% | |
| TCAAGACTCATTGTTTGTAG+CGG | + | chr6.4:63692659-63692678 | None:intergenic | 35.0% | |
| TGGTGTAACAAGAACCATTT+CGG | + | chr6.4:63693349-63693368 | None:intergenic | 35.0% | |
| ! | ACATTTTTGTTGCATCTTCG+TGG | - | chr6.4:63694226-63694245 | MS.gene66288:CDS | 35.0% |
| ! | ACTGTCGAATCAGAACTTTT+AGG | + | chr6.4:63692890-63692909 | None:intergenic | 35.0% |
| ! | AGGATGTGGGTTATGAATAT+GGG | - | chr6.4:63692693-63692712 | MS.gene66288:intron | 35.0% |
| ! | ATTATCCTCTCTGACTTTTG+GGG | + | chr6.4:63693758-63693777 | None:intergenic | 35.0% |
| ! | CATGCTTTTCTTACAGACAA+AGG | + | chr6.4:63692509-63692528 | None:intergenic | 35.0% |
| ! | CATGTAGTGGAAAGTAAACA+AGG | + | chr6.4:63693149-63693168 | None:intergenic | 35.0% |
| ! | CTGCGGTTGTTAAATGTTTT+AGG | - | chr6.4:63691379-63691398 | MS.gene66288:intron | 35.0% |
| ! | TATATGGAAGCTTTGTGTTC+CGG | - | chr6.4:63693955-63693974 | MS.gene66288:CDS | 35.0% |
| ! | TTTAGGATCCTGCATCTTTA+TGG | + | chr6.4:63692873-63692892 | None:intergenic | 35.0% |
| !! | ATTACTACTCAGCTTGTTGT+TGG | + | chr6.4:63691106-63691125 | None:intergenic | 35.0% |
| !! | CAACAATTTTGGTGAGATGT+GGG | + | chr6.4:63691359-63691378 | None:intergenic | 35.0% |
| !! | GAGAATTGTTTCGAGTTCTT+TGG | + | chr6.4:63691199-63691218 | None:intergenic | 35.0% |
| !! | GCTTTGAAATTAGCGAATCA+AGG | - | chr6.4:63691453-63691472 | MS.gene66288:intron | 35.0% |
| !! | TAAGCAATCAGGCTTGTTTT+CGG | - | chr6.4:63693627-63693646 | MS.gene66288:intron | 35.0% |
| AAAAGAGGGAGAAAGAGCAA+AGG | + | chr6.4:63692126-63692145 | None:intergenic | 40.0% | |
| AACATCTCTATGTCTGGACT+CGG | + | chr6.4:63692444-63692463 | None:intergenic | 40.0% | |
| AACGAGAATAAGTTCGTCAC+CGG | + | chr6.4:63693977-63693996 | None:intergenic | 40.0% | |
| ACAAGGTGATTTCTCACTCT+CGG | - | chr6.4:63691905-63691924 | MS.gene66288:CDS | 40.0% | |
| AGGGTTTGAAAGATACGGAT+TGG | - | chr6.4:63691769-63691788 | MS.gene66288:CDS | 40.0% | |
| AGTCCAGACATAGAGATGTT+AGG | - | chr6.4:63692444-63692463 | MS.gene66288:intron | 40.0% | |
| ATGGTTCTTGTTACACCACA+CGG | - | chr6.4:63693351-63693370 | MS.gene66288:CDS | 40.0% | |
| CCAGATTCTTCTGTTAGAGA+AGG | - | chr6.4:63691405-63691424 | MS.gene66288:intron | 40.0% | |
| CCTTCTCTAACAGAAGAATC+TGG | + | chr6.4:63691408-63691427 | None:intergenic | 40.0% | |
| CTATTCAACTCAATCAACGC+AGG | + | chr6.4:63691681-63691700 | None:intergenic | 40.0% | |
| CTGGTATTGTACAAAACACG+CGG | - | chr6.4:63691577-63691596 | MS.gene66288:intron | 40.0% | |
| GAGCAAAGGTAAACCTTTGA+AGG | + | chr6.4:63692112-63692131 | None:intergenic | 40.0% | |
| GATTATAGGTGAAACCAGTG+AGG | - | chr6.4:63692007-63692026 | MS.gene66288:CDS | 40.0% | |
| GTCATCCCAAAAGAGATGAT+TGG | - | chr6.4:63692552-63692571 | MS.gene66288:intron | 40.0% | |
| GTGAATCGTCTTGTATGTGA+AGG | - | chr6.4:63693916-63693935 | MS.gene66288:CDS | 40.0% | |
| TAATTTGAACTGCTTAGGGG+AGG | - | chr6.4:63693774-63693793 | MS.gene66288:intron | 40.0% | |
| TCCACTACAGAATGTGTTCT+GGG | + | chr6.4:63692596-63692615 | None:intergenic | 40.0% | |
| TCTACAGAAAATATCTGCGG+AGG | - | chr6.4:63692383-63692402 | MS.gene66288:intron | 40.0% | |
| TCTCACCAAAATTGTTGCTG+CGG | - | chr6.4:63691362-63691381 | MS.gene66288:intron | 40.0% | |
| TCTGCTCAAGTGAGAAAGAA+TGG | - | chr6.4:63693814-63693833 | MS.gene66288:intron | 40.0% | |
| TCTTCGTGGCATACCTTAAA+TGG | - | chr6.4:63694240-63694259 | MS.gene66288:CDS | 40.0% | |
| TCTTGATGTTACAAGCATGC+AGG | - | chr6.4:63692673-63692692 | MS.gene66288:intron | 40.0% | |
| TGGAATGTGGAGTTAATGAG+TGG | + | chr6.4:63691221-63691240 | None:intergenic | 40.0% | |
| TGTAATTTGGGGACTTGACT+CGG | + | chr6.4:63692915-63692934 | None:intergenic | 40.0% | |
| TTCATTCTCTTGATTCCTCG+AGG | - | chr6.4:63691878-63691897 | MS.gene66288:CDS | 40.0% | |
| TTCCACTACAGAATGTGTTC+TGG | + | chr6.4:63692597-63692616 | None:intergenic | 40.0% | |
| TTTAATAACCCAGGCCTGTT+TGG | + | chr6.4:63694400-63694419 | None:intergenic | 40.0% | |
| ! | AACAACCGCAGCAACAATTT+TGG | + | chr6.4:63691370-63691389 | None:intergenic | 40.0% |
| ! | AACGGTTTGCTTCTCACATT+TGG | + | chr6.4:63692815-63692834 | None:intergenic | 40.0% |
| ! | AACGTGCCAATCATCTCTTT+TGG | + | chr6.4:63692561-63692580 | None:intergenic | 40.0% |
| ! | ACGTGCCAATCATCTCTTTT+GGG | + | chr6.4:63692560-63692579 | None:intergenic | 40.0% |
| ! | CAAAGGTAAACCTTTGAAGG+AGG | + | chr6.4:63692109-63692128 | None:intergenic | 40.0% |
| ! | CAGGATGTGGGTTATGAATA+TGG | - | chr6.4:63692692-63692711 | MS.gene66288:intron | 40.0% |
| ! | CAGTAGTTTGTGTTACTCTC+GGG | + | chr6.4:63693889-63693908 | None:intergenic | 40.0% |
| ! | CCAGTAGTTTGTGTTACTCT+CGG | + | chr6.4:63693890-63693909 | None:intergenic | 40.0% |
| ! | CCTATTTTCGATGCTCTTGT+TGG | - | chr6.4:63691510-63691529 | MS.gene66288:intron | 40.0% |
| ! | CTAGTTTCTGAAGATGGCTT+TGG | + | chr6.4:63693604-63693623 | None:intergenic | 40.0% |
| ! | CTTGAAGCGTTATCATGTAG+TGG | + | chr6.4:63693162-63693181 | None:intergenic | 40.0% |
| ! | TTGCTTCTCACATTTGGCTT+CGG | + | chr6.4:63692809-63692828 | None:intergenic | 40.0% |
| ! | TTTTCAGCCATGCAGAAAAG+AGG | - | chr6.4:63694632-63694651 | MS.gene66288:CDS | 40.0% |
| !! | ACCATTTCTAGCATTGGTTC+TGG | + | chr6.4:63693860-63693879 | None:intergenic | 40.0% |
| !! | AGGACAACCATTTCTAGCAT+TGG | + | chr6.4:63693866-63693885 | None:intergenic | 40.0% |
| !! | ATCGCTTTTACCGAATAACC+TGG | - | chr6.4:63694467-63694486 | MS.gene66288:CDS | 40.0% |
| !! | CCAACAAGAGCATCGAAAAT+AGG | + | chr6.4:63691513-63691532 | None:intergenic | 40.0% |
| !! | CTGCGTTGATTGAGTTGAAT+AGG | - | chr6.4:63691679-63691698 | MS.gene66288:CDS | 40.0% |
| !! | GCAACAATTTTGGTGAGATG+TGG | + | chr6.4:63691360-63691379 | None:intergenic | 40.0% |
| !! | GCTGTTGGTAGTATTAGAGA+GGG | - | chr6.4:63691750-63691769 | MS.gene66288:CDS | 40.0% |
| !! | TCGCTTTTACCGAATAACCT+GGG | - | chr6.4:63694468-63694487 | MS.gene66288:CDS | 40.0% |
| AAGGAGGATCCAGTTTCTGA+AGG | + | chr6.4:63692093-63692112 | None:intergenic | 45.0% | |
| AATCACCTTGTCAAACCTCG+AGG | + | chr6.4:63691896-63691915 | None:intergenic | 45.0% | |
| ACTCATTGTTTGTAGCGGCT+TGG | + | chr6.4:63692654-63692673 | None:intergenic | 45.0% | |
| AGGAATGAGGAGATGGAATG+TGG | + | chr6.4:63691234-63691253 | None:intergenic | 45.0% | |
| AGGTGTATTATTCAGGCTGG+TGG | - | chr6.4:63691699-63691718 | MS.gene66288:CDS | 45.0% | |
| CAATGCAATTTGGTCCGTGA+CGG | + | chr6.4:63694549-63694568 | None:intergenic | 45.0% | |
| CACTTTAGCACCGTATCTTC+TGG | - | chr6.4:63694065-63694084 | MS.gene66288:intron | 45.0% | |
| CCAAGCCTACCATTCTTGAT+TGG | + | chr6.4:63693459-63693478 | None:intergenic | 45.0% | |
| CCAATCAAGAATGGTAGGCT+TGG | - | chr6.4:63693456-63693475 | MS.gene66288:intron | 45.0% | |
| CCACTACAGAATGTGTTCTG+GGG | + | chr6.4:63692595-63692614 | None:intergenic | 45.0% | |
| CCATACAAAACCGAAACAGG+AGG | + | chr6.4:63691606-63691625 | None:intergenic | 45.0% | |
| CCGAGAGTAACACAAACTAC+TGG | - | chr6.4:63693887-63693906 | MS.gene66288:CDS | 45.0% | |
| CTATCTCCAGCATGAATCCT+CGG | + | chr6.4:63693700-63693719 | None:intergenic | 45.0% | |
| GAAACTGGATCCTCCTTCAA+AGG | - | chr6.4:63692096-63692115 | MS.gene66288:CDS | 45.0% | |
| GAATGTCGAGAATGCAAGAG+AGG | + | chr6.4:63691254-63691273 | None:intergenic | 45.0% | |
| GAGAATGCAAGAGAGGAATG+AGG | + | chr6.4:63691247-63691266 | None:intergenic | 45.0% | |
| GAGCCTAACATCTCTATGTC+TGG | + | chr6.4:63692450-63692469 | None:intergenic | 45.0% | |
| GATCGAGACACACACGATAT+CGG | - | chr6.4:63691171-63691190 | MS.gene66288:CDS | 45.0% | |
| GATTCATGCTGGAGATAGTG+TGG | - | chr6.4:63693702-63693721 | MS.gene66288:CDS | 45.0% | |
| GCAGGTTTCGCCATAAAATG+TGG | + | chr6.4:63691663-63691682 | None:intergenic | 45.0% | |
| GCCAGAACCAATGCTAGAAA+TGG | - | chr6.4:63693856-63693875 | MS.gene66288:intron | 45.0% | |
| GGGTTATGAATATGGGCCTA+TGG | - | chr6.4:63692700-63692719 | MS.gene66288:intron | 45.0% | |
| GTTACAAGCATGCAGGATGT+GGG | - | chr6.4:63692680-63692699 | MS.gene66288:intron | 45.0% | |
| TGATTCCTCGAGGTTTGACA+AGG | - | chr6.4:63691888-63691907 | MS.gene66288:CDS | 45.0% | |
| TGCGTTGGGACAAATTGCTT+TGG | - | chr6.4:63691816-63691835 | MS.gene66288:CDS | 45.0% | |
| TGTGAGAAGCAAACCGTTAG+AGG | - | chr6.4:63692817-63692836 | MS.gene66288:CDS | 45.0% | |
| TGTTACAAGCATGCAGGATG+TGG | - | chr6.4:63692679-63692698 | MS.gene66288:intron | 45.0% | |
| TTAGCACCGTATCTTCTGGA+AGG | - | chr6.4:63694069-63694088 | MS.gene66288:intron | 45.0% | |
| TTGTTACACCACACGGTATG+TGG | - | chr6.4:63693358-63693377 | MS.gene66288:CDS | 45.0% | |
| ! | AGTGTTCTTTTGACGGCTGT+TGG | - | chr6.4:63691735-63691754 | MS.gene66288:CDS | 45.0% |
| ! | TAGTTTGTGTTACTCTCGGG+AGG | + | chr6.4:63693886-63693905 | None:intergenic | 45.0% |
| ! | TGTTGAAATGAGCACCGTCA+CGG | - | chr6.4:63694532-63694551 | MS.gene66288:CDS | 45.0% |
| !! | AGATGGCTTTGGAGTGCATA+CGG | + | chr6.4:63693593-63693612 | None:intergenic | 45.0% |
| !! | CCTCCTGTTTCGGTTTTGTA+TGG | - | chr6.4:63691603-63691622 | MS.gene66288:intron | 45.0% |
| !! | GACGCAGAGTGTTCTTTTGA+CGG | - | chr6.4:63691728-63691747 | MS.gene66288:CDS | 45.0% |
| !! | GGCTGTTGGTAGTATTAGAG+AGG | - | chr6.4:63691749-63691768 | MS.gene66288:CDS | 45.0% |
| !! | TTGGCTCTGCCTCACAAATT+TGG | + | chr6.4:63693548-63693567 | None:intergenic | 45.0% |
| AAAGCGGCTTCTGTTGCGTT+GGG | - | chr6.4:63691802-63691821 | MS.gene66288:CDS | 50.0% | |
| ACTACCGAGCCTTCAGAAAC+TGG | - | chr6.4:63692081-63692100 | MS.gene66288:CDS | 50.0% | |
| ATCTCTATGTCTGGACTCGG+TGG | + | chr6.4:63692441-63692460 | None:intergenic | 50.0% | |
| CACTCCTGCTTGTCATCCAT+AGG | + | chr6.4:63692719-63692738 | None:intergenic | 50.0% | |
| CCCCAGAACACATTCTGTAG+TGG | - | chr6.4:63692592-63692611 | MS.gene66288:intron | 50.0% | |
| CTTAACCAGTGCAGCCAAAC+AGG | - | chr6.4:63694383-63694402 | MS.gene66288:CDS | 50.0% | |
| GCAAGAGAGGAATGAGGAGA+TGG | + | chr6.4:63691241-63691260 | None:intergenic | 50.0% | |
| TAAAGCGGCTTCTGTTGCGT+TGG | - | chr6.4:63691801-63691820 | MS.gene66288:CDS | 50.0% | |
| TGTAAAACCGCATCCCTCAC+TGG | + | chr6.4:63692024-63692043 | None:intergenic | 50.0% | |
| ! | GCTTCAGCGTTTTGTCTTGC+TGG | - | chr6.4:63691558-63691577 | MS.gene66288:intron | 50.0% |
| ! | GGATCCAGTTTCTGAAGGCT+CGG | + | chr6.4:63692088-63692107 | None:intergenic | 50.0% |
| ! | GGCTCGGTAGTATAATGACC+CGG | + | chr6.4:63692072-63692091 | None:intergenic | 50.0% |
| ! | TCCTGGGAGAAGCGACATTT+TGG | + | chr6.4:63693567-63693586 | None:intergenic | 50.0% |
| !! | CATTTTCAAGGAGCCAACCG+AGG | - | chr6.4:63693680-63693699 | MS.gene66288:CDS | 50.0% |
| AACTTGCCTGCTGCAGCCAT+GGG | + | chr6.4:63694116-63694135 | None:intergenic | 55.0% | |
| AGCCAACCGAGGATTCATGC+TGG | - | chr6.4:63693691-63693710 | MS.gene66288:CDS | 55.0% | |
| CACGCGGAATCCTCCTGTTT+CGG | - | chr6.4:63691593-63691612 | MS.gene66288:intron | 55.0% | |
| CATAATCCCATGGCTGCAGC+AGG | - | chr6.4:63694107-63694126 | MS.gene66288:CDS | 55.0% | |
| CTCCAGCATGAATCCTCGGT+TGG | + | chr6.4:63693696-63693715 | None:intergenic | 55.0% | |
| CTGCTGCAGCCATGGGATTA+TGG | + | chr6.4:63694109-63694128 | None:intergenic | 55.0% | |
| GACTGCCCCAAAAGTCAGAG+AGG | - | chr6.4:63693750-63693769 | MS.gene66288:CDS | 55.0% | |
| GGAGTGCATACGGAGATCCT+GGG | + | chr6.4:63693583-63693602 | None:intergenic | 55.0% | |
| GGTGAAACCAGTGAGGGATG+CGG | - | chr6.4:63692014-63692033 | MS.gene66288:CDS | 55.0% | |
| TATCTGCGGAGGTGACTCTG+TGG | - | chr6.4:63692394-63692413 | MS.gene66288:intron | 55.0% | |
| TGGAGTGCATACGGAGATCC+TGG | + | chr6.4:63693584-63693603 | None:intergenic | 55.0% | |
| TGGGCCTATGGATGACAAGC+AGG | - | chr6.4:63692712-63692731 | MS.gene66288:intron | 55.0% | |
| ! | CTGCACGCCTCTTTTCTGCA+TGG | + | chr6.4:63694642-63694661 | None:intergenic | 55.0% |
| ! | GCCAAAATGTCGCTTCTCCC+AGG | - | chr6.4:63693563-63693582 | MS.gene66288:intron | 55.0% |
| !! | AGCATTGGTTCTGGCAGCAG+AGG | + | chr6.4:63693851-63693870 | None:intergenic | 55.0% |
| CAGTGCAGCCAAACAGGCCT+GGG | - | chr6.4:63694389-63694408 | MS.gene66288:CDS | 60.0% | |
| GAACTTGCCTGCTGCAGCCA+TGG | + | chr6.4:63694117-63694136 | None:intergenic | 60.0% | |
| CCAGGCCTGTTTGGCTGCAC+TGG | + | chr6.4:63694391-63694410 | None:intergenic | 65.0% | |
| CCAGTGCAGCCAAACAGGCC+TGG | - | chr6.4:63694388-63694407 | MS.gene66288:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 63691096 | 63694694 | 63691096 | ID=MS.gene66288 |
| chr6.4 | mRNA | 63691096 | 63694694 | 63691096 | ID=MS.gene66288.t1;Parent=MS.gene66288 |
| chr6.4 | exon | 63694073 | 63694694 | 63694073 | ID=MS.gene66288.t1.exon1;Parent=MS.gene66288.t1 |
| chr6.4 | CDS | 63694073 | 63694694 | 63694073 | ID=cds.MS.gene66288.t1;Parent=MS.gene66288.t1 |
| chr6.4 | exon | 63693881 | 63693984 | 63693881 | ID=MS.gene66288.t1.exon2;Parent=MS.gene66288.t1 |
| chr6.4 | CDS | 63693881 | 63693984 | 63693881 | ID=cds.MS.gene66288.t1;Parent=MS.gene66288.t1 |
| chr6.4 | exon | 63693673 | 63693775 | 63693673 | ID=MS.gene66288.t1.exon3;Parent=MS.gene66288.t1 |
| chr6.4 | CDS | 63693673 | 63693775 | 63693673 | ID=cds.MS.gene66288.t1;Parent=MS.gene66288.t1 |
| chr6.4 | exon | 63692757 | 63693400 | 63692757 | ID=MS.gene66288.t1.exon4;Parent=MS.gene66288.t1 |
| chr6.4 | CDS | 63692757 | 63693400 | 63692757 | ID=cds.MS.gene66288.t1;Parent=MS.gene66288.t1 |
| chr6.4 | exon | 63691662 | 63692372 | 63691662 | ID=MS.gene66288.t1.exon5;Parent=MS.gene66288.t1 |
| chr6.4 | CDS | 63691662 | 63692372 | 63691662 | ID=cds.MS.gene66288.t1;Parent=MS.gene66288.t1 |
| chr6.4 | exon | 63691096 | 63691246 | 63691096 | ID=MS.gene66288.t1.exon6;Parent=MS.gene66288.t1 |
| chr6.4 | CDS | 63691096 | 63691246 | 63691096 | ID=cds.MS.gene66288.t1;Parent=MS.gene66288.t1 |
| Gene Sequence |
| Protein sequence |
