Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20117.t1 | XP_013442430.1 | 93.6 | 529 | 30 | 1 | 1 | 525 | 1 | 529 | 3.20E-243 | 850.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20117.t1 | F4KGE8 | 29.5 | 403 | 239 | 9 | 146 | 518 | 168 | 555 | 6.2e-38 | 160.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20117.t1 | A0A072TSD7 | 93.6 | 529 | 30 | 1 | 1 | 525 | 1 | 529 | 2.3e-243 | 850.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049193 | MS.gene20117 | 0.800295 | 1.54E-48 | -1.69E-46 |
| MS.gene049283 | MS.gene20117 | 0.811543 | 6.64E-51 | -1.69E-46 |
| MS.gene050257 | MS.gene20117 | 0.802928 | 4.44E-49 | -1.69E-46 |
| MS.gene050258 | MS.gene20117 | 0.80632 | 8.71E-50 | -1.69E-46 |
| MS.gene050414 | MS.gene20117 | 0.825375 | 4.85E-54 | -1.69E-46 |
| MS.gene052016 | MS.gene20117 | 0.852615 | 4.11E-61 | -1.69E-46 |
| MS.gene052307 | MS.gene20117 | 0.822731 | 2.02E-53 | -1.69E-46 |
| MS.gene052463 | MS.gene20117 | 0.816168 | 6.36E-52 | -1.69E-46 |
| MS.gene052498 | MS.gene20117 | 0.81119 | 7.92E-51 | -1.69E-46 |
| MS.gene052533 | MS.gene20117 | 0.801014 | 1.10E-48 | -1.69E-46 |
| MS.gene052776 | MS.gene20117 | 0.806263 | 8.95E-50 | -1.69E-46 |
| MS.gene053079 | MS.gene20117 | 0.806428 | 8.27E-50 | -1.69E-46 |
| MS.gene053143 | MS.gene20117 | 0.80952 | 1.82E-50 | -1.69E-46 |
| MS.gene053618 | MS.gene20117 | 0.803978 | 2.69E-49 | -1.69E-46 |
| MS.gene053620 | MS.gene20117 | 0.84947 | 3.17E-60 | -1.69E-46 |
| MS.gene054178 | MS.gene20117 | 0.825775 | 3.90E-54 | -1.69E-46 |
| MS.gene054824 | MS.gene20117 | 0.81299 | 3.21E-51 | -1.69E-46 |
| MS.gene054892 | MS.gene20117 | 0.801692 | 7.99E-49 | -1.69E-46 |
| MS.gene054893 | MS.gene20117 | 0.804806 | 1.81E-49 | -1.69E-46 |
| MS.gene055386 | MS.gene20117 | 0.825496 | 4.54E-54 | -1.69E-46 |
| MS.gene05539 | MS.gene20117 | 0.803688 | 3.09E-49 | -1.69E-46 |
| MS.gene055513 | MS.gene20117 | 0.828292 | 9.75E-55 | -1.69E-46 |
| MS.gene055724 | MS.gene20117 | 0.833161 | 6.25E-56 | -1.69E-46 |
| MS.gene056507 | MS.gene20117 | 0.811404 | 7.12E-51 | -1.69E-46 |
| MS.gene056519 | MS.gene20117 | 0.807175 | 5.75E-50 | -1.69E-46 |
| MS.gene056699 | MS.gene20117 | 0.805806 | 1.12E-49 | -1.69E-46 |
| MS.gene057034 | MS.gene20117 | 0.808371 | 3.20E-50 | -1.69E-46 |
| MS.gene058649 | MS.gene20117 | 0.818341 | 2.06E-52 | -1.69E-46 |
| MS.gene059634 | MS.gene20117 | 0.816011 | 6.89E-52 | -1.69E-46 |
| MS.gene060522 | MS.gene20117 | 0.806384 | 8.45E-50 | -1.69E-46 |
| MS.gene060933 | MS.gene20117 | 0.805925 | 1.05E-49 | -1.69E-46 |
| MS.gene061100 | MS.gene20117 | 0.816821 | 4.54E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20117.t1 | MTR_0178s0030 | 94.707 | 529 | 24 | 1 | 1 | 525 | 1 | 529 | 0.0 | 955 |
| MS.gene20117.t1 | MTR_4g025420 | 37.198 | 414 | 227 | 5 | 130 | 525 | 21 | 419 | 1.03e-87 | 276 |
| MS.gene20117.t1 | MTR_8g087400 | 35.025 | 394 | 225 | 7 | 141 | 519 | 82 | 459 | 4.68e-65 | 219 |
| MS.gene20117.t1 | MTR_8g059485 | 35.052 | 388 | 228 | 9 | 141 | 519 | 65 | 437 | 1.48e-60 | 206 |
| MS.gene20117.t1 | MTR_8g059485 | 35.052 | 388 | 228 | 9 | 141 | 519 | 74 | 446 | 2.51e-60 | 206 |
| MS.gene20117.t1 | MTR_2g075910 | 30.472 | 466 | 288 | 10 | 74 | 518 | 3 | 453 | 4.31e-57 | 197 |
| MS.gene20117.t1 | MTR_3g462150 | 29.323 | 399 | 246 | 7 | 141 | 518 | 94 | 477 | 7.35e-45 | 165 |
| MS.gene20117.t1 | MTR_5g075180 | 27.638 | 398 | 245 | 6 | 133 | 521 | 79 | 442 | 8.33e-44 | 161 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20117.t1 | AT3G60680 | 53.462 | 520 | 191 | 8 | 12 | 519 | 14 | 494 | 2.78e-180 | 516 |
| MS.gene20117.t1 | AT2G45260 | 38.631 | 409 | 221 | 6 | 130 | 519 | 22 | 419 | 5.86e-92 | 288 |
| MS.gene20117.t1 | AT1G53380 | 34.343 | 396 | 229 | 8 | 141 | 519 | 70 | 451 | 2.32e-62 | 211 |
| MS.gene20117.t1 | AT1G53380 | 34.343 | 396 | 229 | 8 | 141 | 519 | 70 | 451 | 2.32e-62 | 211 |
| MS.gene20117.t1 | AT1G53380 | 34.343 | 396 | 229 | 8 | 141 | 519 | 70 | 451 | 2.32e-62 | 211 |
| MS.gene20117.t1 | AT1G53380 | 34.343 | 396 | 229 | 8 | 141 | 519 | 70 | 451 | 2.32e-62 | 211 |
| MS.gene20117.t1 | AT1G53380 | 34.343 | 396 | 229 | 8 | 141 | 519 | 70 | 451 | 2.32e-62 | 211 |
| MS.gene20117.t1 | AT3G14870 | 31.221 | 426 | 260 | 8 | 114 | 522 | 56 | 465 | 4.14e-59 | 203 |
| MS.gene20117.t1 | AT3G14870 | 31.221 | 426 | 260 | 8 | 114 | 522 | 56 | 465 | 4.14e-59 | 203 |
| MS.gene20117.t1 | AT3G14870 | 31.221 | 426 | 260 | 8 | 114 | 522 | 56 | 465 | 4.14e-59 | 203 |
| MS.gene20117.t1 | AT3G14870 | 31.221 | 426 | 260 | 8 | 114 | 522 | 57 | 466 | 4.70e-59 | 203 |
| MS.gene20117.t1 | AT3G14870 | 31.221 | 426 | 260 | 8 | 114 | 522 | 60 | 469 | 4.88e-59 | 203 |
| MS.gene20117.t1 | AT1G29300 | 31.298 | 393 | 228 | 7 | 141 | 519 | 88 | 452 | 1.43e-51 | 182 |
| MS.gene20117.t1 | AT4G34080 | 34.643 | 280 | 156 | 5 | 141 | 406 | 15 | 281 | 5.06e-49 | 171 |
| MS.gene20117.t1 | AT2G30380 | 31.010 | 416 | 227 | 10 | 115 | 519 | 45 | 411 | 2.41e-48 | 172 |
| MS.gene20117.t1 | AT5G58960 | 28.780 | 410 | 243 | 9 | 141 | 518 | 88 | 480 | 6.09e-44 | 162 |
| MS.gene20117.t1 | AT5G58960 | 28.780 | 410 | 243 | 9 | 141 | 518 | 88 | 480 | 6.09e-44 | 162 |
| MS.gene20117.t1 | AT5G58960 | 28.780 | 410 | 243 | 9 | 141 | 518 | 163 | 555 | 6.14e-44 | 164 |
| MS.gene20117.t1 | AT4G33320 | 34.815 | 270 | 148 | 6 | 141 | 395 | 15 | 271 | 2.61e-42 | 153 |
| MS.gene20117.t1 | AT4G36100 | 37.615 | 109 | 61 | 2 | 125 | 231 | 4 | 107 | 2.13e-14 | 73.2 |
| MS.gene20117.t1 | AT2G32130 | 30.000 | 120 | 83 | 1 | 141 | 260 | 36 | 154 | 2.03e-11 | 62.8 |
Find 102 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAAAAGTTGTGTACAAATT+AGG | 0.125406 | 7.1:-56871167 | None:intergenic |
| AGGAAAGCGGGGTGGGATTT+AGG | 0.182417 | 7.1:+56871482 | MS.gene20117:CDS |
| AGATCGTGCGACGTCGTTTC+GGG | 0.231429 | 7.1:-56870984 | None:intergenic |
| GAACGTGTGCGGTTTGTAAT+TGG | 0.236139 | 7.1:-56871055 | None:intergenic |
| GGAAGAAGAGGGTGTCGTTT+TGG | 0.246195 | 7.1:-56870838 | None:intergenic |
| TGTTTGTTTAGGGATGTTTC+AGG | 0.249312 | 7.1:+56871580 | MS.gene20117:CDS |
| GGTAAACGACGGTGTCGTTT+TGG | 0.276849 | 7.1:-56870865 | None:intergenic |
| CGGGTAGTGTTAATTGGTTT+GGG | 0.278045 | 7.1:-56870887 | None:intergenic |
| TCGTTTCGGGTAGTGTTAAT+TGG | 0.288317 | 7.1:-56870893 | None:intergenic |
| ACCTTTGCCCTTCCCTTATT+CGG | 0.290519 | 7.1:-56872052 | None:intergenic |
| GAAAAGTTGTGTACAAATTA+GGG | 0.293873 | 7.1:-56871166 | None:intergenic |
| AGATCGTGCGACGTCGTTTC+GGG | 0.298233 | 7.1:-56870906 | None:intergenic |
| TCGGGTAGTGTTAATTGGTT+TGG | 0.300366 | 7.1:-56870888 | None:intergenic |
| GGAAGAAGACGGTGTCGTTT+TGG | 0.316956 | 7.1:-56870790 | None:intergenic |
| GGCGAATTTCTGAAACATTT+CGG | 0.321321 | 7.1:-56870628 | None:intergenic |
| TAGATCGTGCGACGTCGTTT+CGG | 0.327779 | 7.1:-56870985 | None:intergenic |
| TTGGGATGGCTAGCTCGATA+TGG | 0.335510 | 7.1:+56871915 | MS.gene20117:CDS |
| GAGGTTAACCTGGCCGAATA+AGG | 0.343519 | 7.1:+56872039 | MS.gene20117:CDS |
| TTGAGGTTGTTTGTTATTGT+TGG | 0.350674 | 7.1:-56870601 | None:intergenic |
| TGTAAACGACGGTGTCGTTT+TGG | 0.359861 | 7.1:-56870943 | None:intergenic |
| GAGATCGTGCGACGTCGTTT+CGG | 0.360977 | 7.1:-56870907 | None:intergenic |
| TGTCTAAGAAGCTTTGTAAT+GGG | 0.369481 | 7.1:+56871351 | MS.gene20117:CDS |
| ATCGATCTTCGCCGCCGTTT+CGG | 0.375334 | 7.1:+56871013 | MS.gene20117:CDS |
| AGCGGGGTGGGATTTAGGTT+TGG | 0.395552 | 7.1:+56871487 | MS.gene20117:CDS |
| GGCTGCGAATGCTGTTCATC+CGG | 0.397718 | 7.1:+56871508 | MS.gene20117:CDS |
| GGGTGAAGAGGGTGTCGTTT+TGG | 0.400345 | 7.1:-56870817 | None:intergenic |
| TTGTTCTATGAGGCATTTGT+TGG | 0.411551 | 7.1:+56871896 | MS.gene20117:CDS |
| TGCGACGTCGTTTCGGGTAG+TGG | 0.414451 | 7.1:-56870978 | None:intergenic |
| GGAATTGCTTAGTATTCATC+CGG | 0.418751 | 7.1:+56871748 | MS.gene20117:CDS |
| CGTGTCGAATCGATTGCAAT+TGG | 0.423270 | 7.1:+56871253 | MS.gene20117:CDS |
| TAGTTGTTTGAAGCAATTGT+TGG | 0.431050 | 7.1:+56871703 | MS.gene20117:CDS |
| TGAGGTTGTTTGTTATTGTT+GGG | 0.431892 | 7.1:-56870600 | None:intergenic |
| TTGGTCGGTGATGATTTCTT+CGG | 0.436152 | 7.1:-56870739 | None:intergenic |
| TGCCCTTCCCTTATTCGGCC+AGG | 0.437856 | 7.1:-56872047 | None:intergenic |
| TTATGTAAGTAGTTTCTGTT+TGG | 0.438980 | 7.1:+56872132 | MS.gene20117:CDS |
| GAAGTTGGATGAGGTTCAAA+AGG | 0.439815 | 7.1:+56871316 | MS.gene20117:CDS |
| GTCGTTTCGGGTAGTGGTGA+TGG | 0.443747 | 7.1:-56870972 | None:intergenic |
| TTGTCTAAGAAGCTTTGTAA+TGG | 0.453436 | 7.1:+56871350 | MS.gene20117:CDS |
| CAGAGTAAGTTGAGAACACT+AGG | 0.459927 | 7.1:+56871227 | MS.gene20117:CDS |
| GTTTGTTTAGGGATGTTTCA+GGG | 0.464560 | 7.1:+56871581 | MS.gene20117:CDS |
| AGGTTAACCTGGCCGAATAA+GGG | 0.474296 | 7.1:+56872040 | MS.gene20117:CDS |
| TTTGATGAGGAAAGCGGGGT+GGG | 0.484462 | 7.1:+56871475 | MS.gene20117:CDS |
| CTATGAGGCATTTGTTGGGA+TGG | 0.485726 | 7.1:+56871901 | MS.gene20117:CDS |
| AAAATCGACGACTCCATTGA+AGG | 0.490608 | 7.1:-56871821 | None:intergenic |
| ATAAGGGAAGGGCAAAGGTC+GGG | 0.494657 | 7.1:+56872056 | MS.gene20117:CDS |
| GTCGTTGAGTTTGTTCTATG+AGG | 0.503096 | 7.1:+56871886 | MS.gene20117:CDS |
| TGTTCTATGAGGCATTTGTT+GGG | 0.504434 | 7.1:+56871897 | MS.gene20117:CDS |
| GTCGGTGATGATTTCTTCGG+TGG | 0.507256 | 7.1:-56870736 | None:intergenic |
| ATTGGTTTGATGAGGAAAGC+GGG | 0.509874 | 7.1:+56871470 | MS.gene20117:CDS |
| GTCTTCATTGGAAGCTGAAG+TGG | 0.511850 | 7.1:+56871196 | MS.gene20117:CDS |
| ATGAAGCGGTGTTGAATTCG+TGG | 0.526031 | 7.1:+56871861 | MS.gene20117:CDS |
| CGAAGCTTCGAAAGCCGAAA+CGG | 0.528599 | 7.1:-56871027 | None:intergenic |
| TGAAACATTTCGGAGATTTG+AGG | 0.528680 | 7.1:-56870618 | None:intergenic |
| GCTGCGAATGCTGTTCATCC+GGG | 0.530190 | 7.1:+56871509 | MS.gene20117:CDS |
| AAGTTGGATGAGGTTCAAAA+GGG | 0.531326 | 7.1:+56871317 | MS.gene20117:CDS |
| GAGACTGATCCATCCTTCAA+TGG | 0.535520 | 7.1:+56871808 | MS.gene20117:CDS |
| TATCTCCACCGCAGGATCAA+AGG | 0.540252 | 7.1:-56871960 | None:intergenic |
| GCTTCCAATGAAGACCCAAA+TGG | 0.542057 | 7.1:-56871188 | None:intergenic |
| GATGAGGAAGAAGTTGGATG+AGG | 0.548856 | 7.1:+56871307 | MS.gene20117:CDS |
| GATATGGACACTGCATAAGT+TGG | 0.552571 | 7.1:+56871931 | MS.gene20117:CDS |
| GAGATATTTCAAGTGGAAAG+AGG | 0.553599 | 7.1:+56871977 | MS.gene20117:CDS |
| GTTTGATGAGGAAAGCGGGG+TGG | 0.554497 | 7.1:+56871474 | MS.gene20117:CDS |
| GAAGGTAGTTATTCAATCGC+AGG | 0.557620 | 7.1:+56872108 | MS.gene20117:CDS |
| GAAGAAGAATTGATGTCGAA+TGG | 0.564545 | 7.1:+56871647 | MS.gene20117:CDS |
| TGAAATAAGCACTTTATCAG+TGG | 0.565385 | 7.1:-56871102 | None:intergenic |
| GGCTCATGCCTTTGATCCTG+CGG | 0.568254 | 7.1:+56871952 | MS.gene20117:CDS |
| GCCGAATAAGGGAAGGGCAA+AGG | 0.577715 | 7.1:+56872051 | MS.gene20117:CDS |
| ACTTGAAATATCTCCACCGC+AGG | 0.580613 | 7.1:-56871968 | None:intergenic |
| GGGTAGTGTTAATTGGTTTG+GGG | 0.581031 | 7.1:-56870886 | None:intergenic |
| GATTGGTTTGATGAGGAAAG+CGG | 0.584028 | 7.1:+56871469 | MS.gene20117:CDS |
| AATAAGGGAAGGGCAAAGGT+CGG | 0.590403 | 7.1:+56872055 | MS.gene20117:CDS |
| GAATTGCTTAGTATTCATCC+GGG | 0.593506 | 7.1:+56871749 | MS.gene20117:CDS |
| GGAATTCTCCATGGTATACA+TGG | 0.594647 | 7.1:+56872003 | MS.gene20117:CDS |
| GCATGTGTCTAGTAATCCGA+TGG | 0.594832 | 7.1:+56871727 | MS.gene20117:CDS |
| TGATTTCTTCGGTGGAGTCG+AGG | 0.595840 | 7.1:-56870728 | None:intergenic |
| TTCGTCGTTGAAGAATTCGA+AGG | 0.600535 | 7.1:-56870670 | None:intergenic |
| TGCGGTGGAGATATTTCAAG+TGG | 0.606922 | 7.1:+56871970 | MS.gene20117:CDS |
| CACATCATCCATGTATACCA+TGG | 0.608257 | 7.1:-56872011 | None:intergenic |
| TAACCTGGCCGAATAAGGGA+AGG | 0.609525 | 7.1:+56872044 | MS.gene20117:CDS |
| ATGTGACAAAGAGGTTAACC+TGG | 0.611702 | 7.1:+56872029 | MS.gene20117:CDS |
| AACAACCTCGACGAATCCGA+TGG | 0.614235 | 7.1:+56870696 | MS.gene20117:CDS |
| TTGGTTTGATGAGGAAAGCG+GGG | 0.615065 | 7.1:+56871471 | MS.gene20117:CDS |
| TCGACGACTCCATTGAAGGA+TGG | 0.615561 | 7.1:-56871817 | None:intergenic |
| AAGAGGTGCGGAATTCTCCA+TGG | 0.621328 | 7.1:+56871994 | MS.gene20117:CDS |
| AGTTGGATGAGGTTCAAAAG+GGG | 0.625113 | 7.1:+56871318 | MS.gene20117:CDS |
| ACCTTCCCAATTCTAAAACC+AGG | 0.627242 | 7.1:-56872091 | None:intergenic |
| TTCTACAAAAGGAACGTGTG+CGG | 0.627487 | 7.1:-56871066 | None:intergenic |
| AGCTTCGAAAGCCGAAACGG+CGG | 0.637708 | 7.1:-56871024 | None:intergenic |
| TGATTTGGATCAGAATGAAG+CGG | 0.638435 | 7.1:+56871847 | MS.gene20117:CDS |
| AATTGGTTTGGGGTAAACGA+CGG | 0.646214 | 7.1:-56870876 | None:intergenic |
| AACCTCGAAAACTCACAACC+CGG | 0.647260 | 7.1:-56871767 | None:intergenic |
| ATTTCAAGTGGAAAGAGGTG+CGG | 0.648317 | 7.1:+56871982 | MS.gene20117:CDS |
| TTTGCATGATGGGTTTAGAG+CGG | 0.650911 | 7.1:+56871424 | MS.gene20117:CDS |
| CAATTGCAATCGATTCGACA+CGG | 0.651781 | 7.1:-56871252 | None:intergenic |
| ACATGGATGATGTGACAAAG+AGG | 0.653060 | 7.1:+56872020 | MS.gene20117:CDS |
| GCTTGAAAAGAAGCATGATG+AGG | 0.654587 | 7.1:+56871277 | MS.gene20117:CDS |
| TCATGCCTTTGATCCTGCGG+TGG | 0.654824 | 7.1:+56871955 | MS.gene20117:CDS |
| TGAATACTAAGCAATTCCAT+CGG | 0.661643 | 7.1:-56871743 | None:intergenic |
| AACCTGGCCGAATAAGGGAA+GGG | 0.673729 | 7.1:+56872045 | MS.gene20117:CDS |
| AGAGTAAGTTGAGAACACTA+GGG | 0.701061 | 7.1:+56871228 | MS.gene20117:CDS |
| AAGCGGTGTTGAATTCGTGG+AGG | 0.727950 | 7.1:+56871864 | MS.gene20117:CDS |
| GATGGCGTTTGTGTAAACGA+CGG | 0.815561 | 7.1:-56870954 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTGATTTAGATTTGAAA+GGG | + | chr7.1:56871675-56871694 | MS.gene20117:CDS | 15.0% |
| !!! | TTTTTTGATTTAGATTTGAA+AGG | + | chr7.1:56871674-56871693 | MS.gene20117:CDS | 15.0% |
| ! | GAAAAGTTGTGTACAAATTA+GGG | - | chr7.1:56871169-56871188 | None:intergenic | 25.0% |
| ! | TTATGTAAGTAGTTTCTGTT+TGG | + | chr7.1:56872132-56872151 | MS.gene20117:CDS | 25.0% |
| !! | TTTTGTCGTATGTTTGTTTA+GGG | + | chr7.1:56871570-56871589 | MS.gene20117:CDS | 25.0% |
| !!! | AAGTTTACGAAGATTTTGAT+TGG | + | chr7.1:56871452-56871471 | MS.gene20117:CDS | 25.0% |
| !!! | GTGTTGTTTATTCGAAAAAA+GGG | + | chr7.1:56871531-56871550 | MS.gene20117:CDS | 25.0% |
| !!! | TTTTTCCTGGTTTTAGAATT+GGG | + | chr7.1:56872086-56872105 | MS.gene20117:CDS | 25.0% |
| GGAAAAGTTGTGTACAAATT+AGG | - | chr7.1:56871170-56871189 | None:intergenic | 30.0% | |
| TGAAATAAGCACTTTATCAG+TGG | - | chr7.1:56871105-56871124 | None:intergenic | 30.0% | |
| TGAATACTAAGCAATTCCAT+CGG | - | chr7.1:56871746-56871765 | None:intergenic | 30.0% | |
| ! | CTTTTGTCGTATGTTTGTTT+AGG | + | chr7.1:56871569-56871588 | MS.gene20117:CDS | 30.0% |
| ! | TAGTTGTTTGAAGCAATTGT+TGG | + | chr7.1:56871703-56871722 | MS.gene20117:CDS | 30.0% |
| ! | TGTACACAACTTTTCCATTT+GGG | + | chr7.1:56871174-56871193 | MS.gene20117:CDS | 30.0% |
| ! | TGTCTAAGAAGCTTTGTAAT+GGG | + | chr7.1:56871351-56871370 | MS.gene20117:CDS | 30.0% |
| ! | TTCACGTTTTCTTCTACAAA+AGG | - | chr7.1:56871080-56871099 | None:intergenic | 30.0% |
| ! | TTGTACACAACTTTTCCATT+TGG | + | chr7.1:56871173-56871192 | MS.gene20117:CDS | 30.0% |
| ! | TTGTCTAAGAAGCTTTGTAA+TGG | + | chr7.1:56871350-56871369 | MS.gene20117:CDS | 30.0% |
| !! | GGTGTTGTTTATTCGAAAAA+AGG | + | chr7.1:56871530-56871549 | MS.gene20117:CDS | 30.0% |
| !! | TGAGGTTGTTTGTTATTGTT+GGG | - | chr7.1:56870603-56870622 | None:intergenic | 30.0% |
| !! | TGATGTTTTGTTGAGTGTTA+GGG | + | chr7.1:56871388-56871407 | MS.gene20117:CDS | 30.0% |
| !! | TTGAGGTTGTTTGTTATTGT+TGG | - | chr7.1:56870604-56870623 | None:intergenic | 30.0% |
| !! | TTTTTCGAATAAACAACACC+CGG | - | chr7.1:56871530-56871549 | None:intergenic | 30.0% |
| !!! | AGATTTTGATTGGTTTGATG+AGG | + | chr7.1:56871462-56871481 | MS.gene20117:CDS | 30.0% |
| !!! | GGTTAGTTTTGGATTGAATT+CGG | + | chr7.1:56871613-56871632 | MS.gene20117:CDS | 30.0% |
| !!! | GGTTTTAGTTTTGAAAGCTA+AGG | - | chr7.1:56870652-56870671 | None:intergenic | 30.0% |
| !!! | GGTTTTGATTTGGTTAGTTT+TGG | + | chr7.1:56871602-56871621 | MS.gene20117:CDS | 30.0% |
| !!! | GTTTGATGATGATGACTTTT+TGG | - | chr7.1:56870761-56870780 | None:intergenic | 30.0% |
| !!! | GTTTTTCCTGGTTTTAGAAT+TGG | + | chr7.1:56872085-56872104 | MS.gene20117:CDS | 30.0% |
| AAGTTGGATGAGGTTCAAAA+GGG | + | chr7.1:56871317-56871336 | MS.gene20117:CDS | 35.0% | |
| GAAGAAGAATTGATGTCGAA+TGG | + | chr7.1:56871647-56871666 | MS.gene20117:CDS | 35.0% | |
| GAATTGCTTAGTATTCATCC+GGG | + | chr7.1:56871749-56871768 | MS.gene20117:CDS | 35.0% | |
| GGAATTGCTTAGTATTCATC+CGG | + | chr7.1:56871748-56871767 | MS.gene20117:CDS | 35.0% | |
| GTTTGTTTAGGGATGTTTCA+GGG | + | chr7.1:56871581-56871600 | MS.gene20117:CDS | 35.0% | |
| TGAAACATTTCGGAGATTTG+AGG | - | chr7.1:56870621-56870640 | None:intergenic | 35.0% | |
| TGTTTGTTTAGGGATGTTTC+AGG | + | chr7.1:56871580-56871599 | MS.gene20117:CDS | 35.0% | |
| ! | AGAGTAAGTTGAGAACACTA+GGG | + | chr7.1:56871228-56871247 | MS.gene20117:CDS | 35.0% |
| ! | GAGATATTTCAAGTGGAAAG+AGG | + | chr7.1:56871977-56871996 | MS.gene20117:CDS | 35.0% |
| ! | GAGTGTTAGGGTTTTTGAAT+CGG | + | chr7.1:56871400-56871419 | MS.gene20117:CDS | 35.0% |
| ! | TGATTTGGATCAGAATGAAG+CGG | + | chr7.1:56871847-56871866 | MS.gene20117:CDS | 35.0% |
| ! | TGTTCTATGAGGCATTTGTT+GGG | + | chr7.1:56871897-56871916 | MS.gene20117:CDS | 35.0% |
| ! | TTGTTCTATGAGGCATTTGT+TGG | + | chr7.1:56871896-56871915 | MS.gene20117:CDS | 35.0% |
| ! | TTTTCAGATGAGGAAGAAGT+TGG | + | chr7.1:56871301-56871320 | MS.gene20117:CDS | 35.0% |
| ! | TTTTCCATTTGGGTCTTCAT+TGG | + | chr7.1:56871184-56871203 | MS.gene20117:CDS | 35.0% |
| !! | ATGATGAGGTTTTTCAGATG+AGG | + | chr7.1:56871291-56871310 | MS.gene20117:CDS | 35.0% |
| !! | GATGATGATGACTTTTTGGT+CGG | - | chr7.1:56870757-56870776 | None:intergenic | 35.0% |
| !! | GGCGAATTTCTGAAACATTT+CGG | - | chr7.1:56870631-56870650 | None:intergenic | 35.0% |
| !! | GTGATGTTTTGTTGAGTGTT+AGG | + | chr7.1:56871387-56871406 | MS.gene20117:CDS | 35.0% |
| !! | TTGAATCGGTTTTGCATGAT+GGG | + | chr7.1:56871414-56871433 | MS.gene20117:CDS | 35.0% |
| !! | TTTGAATCGGTTTTGCATGA+TGG | + | chr7.1:56871413-56871432 | MS.gene20117:CDS | 35.0% |
| !!! | GATGTTTCAGGGTTTTGATT+TGG | + | chr7.1:56871592-56871611 | MS.gene20117:CDS | 35.0% |
| !!! | GTCGTCGATTTTCATTGATT+TGG | + | chr7.1:56871832-56871851 | MS.gene20117:CDS | 35.0% |
| AAAATCGACGACTCCATTGA+AGG | - | chr7.1:56871824-56871843 | None:intergenic | 40.0% | |
| ACATGGATGATGTGACAAAG+AGG | + | chr7.1:56872020-56872039 | MS.gene20117:CDS | 40.0% | |
| AGTTGGATGAGGTTCAAAAG+GGG | + | chr7.1:56871318-56871337 | MS.gene20117:CDS | 40.0% | |
| ATGTGACAAAGAGGTTAACC+TGG | + | chr7.1:56872029-56872048 | MS.gene20117:CDS | 40.0% | |
| CACATCATCCATGTATACCA+TGG | - | chr7.1:56872014-56872033 | None:intergenic | 40.0% | |
| GAAGGTAGTTATTCAATCGC+AGG | + | chr7.1:56872108-56872127 | MS.gene20117:CDS | 40.0% | |
| GAAGTTGGATGAGGTTCAAA+AGG | + | chr7.1:56871316-56871335 | MS.gene20117:CDS | 40.0% | |
| GATATGGACACTGCATAAGT+TGG | + | chr7.1:56871931-56871950 | MS.gene20117:CDS | 40.0% | |
| GGAATTCTCCATGGTATACA+TGG | + | chr7.1:56872003-56872022 | MS.gene20117:CDS | 40.0% | |
| TCGGGTAGTGTTAATTGGTT+TGG | - | chr7.1:56870891-56870910 | None:intergenic | 40.0% | |
| TTCGTCGTTGAAGAATTCGA+AGG | - | chr7.1:56870673-56870692 | None:intergenic | 40.0% | |
| TTCTACAAAAGGAACGTGTG+CGG | - | chr7.1:56871069-56871088 | None:intergenic | 40.0% | |
| TTGGTCGGTGATGATTTCTT+CGG | - | chr7.1:56870742-56870761 | None:intergenic | 40.0% | |
| ! | ATTTCAAGTGGAAAGAGGTG+CGG | + | chr7.1:56871982-56872001 | MS.gene20117:CDS | 40.0% |
| ! | CAGAGTAAGTTGAGAACACT+AGG | + | chr7.1:56871227-56871246 | MS.gene20117:CDS | 40.0% |
| ! | CGGGTAGTGTTAATTGGTTT+GGG | - | chr7.1:56870890-56870909 | None:intergenic | 40.0% |
| ! | GCTTGAAAAGAAGCATGATG+AGG | + | chr7.1:56871277-56871296 | MS.gene20117:CDS | 40.0% |
| ! | GTCGTTGAGTTTGTTCTATG+AGG | + | chr7.1:56871886-56871905 | MS.gene20117:CDS | 40.0% |
| ! | TCGTTTCGGGTAGTGTTAAT+TGG | - | chr7.1:56870896-56870915 | None:intergenic | 40.0% |
| !! | AATTGGTTTGGGGTAAACGA+CGG | - | chr7.1:56870879-56870898 | None:intergenic | 40.0% |
| !! | ACCTTCCCAATTCTAAAACC+AGG | - | chr7.1:56872094-56872113 | None:intergenic | 40.0% |
| !! | ATTGGTTTGATGAGGAAAGC+GGG | + | chr7.1:56871470-56871489 | MS.gene20117:CDS | 40.0% |
| !! | CAATTGCAATCGATTCGACA+CGG | - | chr7.1:56871255-56871274 | None:intergenic | 40.0% |
| !! | GATTGGTTTGATGAGGAAAG+CGG | + | chr7.1:56871469-56871488 | MS.gene20117:CDS | 40.0% |
| !! | GGGTAGTGTTAATTGGTTTG+GGG | - | chr7.1:56870889-56870908 | None:intergenic | 40.0% |
| !! | TTTGCATGATGGGTTTAGAG+CGG | + | chr7.1:56871424-56871443 | MS.gene20117:CDS | 40.0% |
| !!! | TCCTGGTTTTAGAATTGGGA+AGG | + | chr7.1:56872090-56872109 | MS.gene20117:CDS | 40.0% |
| AAAAACCATCGGATTCGTCG+AGG | - | chr7.1:56870704-56870723 | None:intergenic | 45.0% | |
| AACCTCGAAAACTCACAACC+CGG | - | chr7.1:56871770-56871789 | None:intergenic | 45.0% | |
| AATAAGGGAAGGGCAAAGGT+CGG | + | chr7.1:56872055-56872074 | MS.gene20117:CDS | 45.0% | |
| ACCTTTGCCCTTCCCTTATT+CGG | - | chr7.1:56872055-56872074 | None:intergenic | 45.0% | |
| ACTTGAAATATCTCCACCGC+AGG | - | chr7.1:56871971-56871990 | None:intergenic | 45.0% | |
| AGGTTAACCTGGCCGAATAA+GGG | + | chr7.1:56872040-56872059 | MS.gene20117:CDS | 45.0% | |
| CGTGTCGAATCGATTGCAAT+TGG | + | chr7.1:56871253-56871272 | MS.gene20117:CDS | 45.0% | |
| GAACGTGTGCGGTTTGTAAT+TGG | - | chr7.1:56871058-56871077 | None:intergenic | 45.0% | |
| GAGACTGATCCATCCTTCAA+TGG | + | chr7.1:56871808-56871827 | MS.gene20117:CDS | 45.0% | |
| GATGAGGAAGAAGTTGGATG+AGG | + | chr7.1:56871307-56871326 | MS.gene20117:CDS | 45.0% | |
| GATGGCGTTTGTGTAAACGA+CGG | - | chr7.1:56870957-56870976 | None:intergenic | 45.0% | |
| GCATGTGTCTAGTAATCCGA+TGG | + | chr7.1:56871727-56871746 | MS.gene20117:CDS | 45.0% | |
| GCTTCCAATGAAGACCCAAA+TGG | - | chr7.1:56871191-56871210 | None:intergenic | 45.0% | |
| GTCGAGGAGAGAAAAACCAT+CGG | - | chr7.1:56870715-56870734 | None:intergenic | 45.0% | |
| GTCTTCATTGGAAGCTGAAG+TGG | + | chr7.1:56871196-56871215 | MS.gene20117:CDS | 45.0% | |
| TGCGGTGGAGATATTTCAAG+TGG | + | chr7.1:56871970-56871989 | MS.gene20117:CDS | 45.0% | |
| ! | ATGAAGCGGTGTTGAATTCG+TGG | + | chr7.1:56871861-56871880 | MS.gene20117:CDS | 45.0% |
| ! | CTATGAGGCATTTGTTGGGA+TGG | + | chr7.1:56871901-56871920 | MS.gene20117:CDS | 45.0% |
| ! | TTGGTTTGATGAGGAAAGCG+GGG | + | chr7.1:56871471-56871490 | MS.gene20117:CDS | 45.0% |
| !! | GTTTTGGATGGGGAAGAAGA+CGG | - | chr7.1:56870804-56870823 | None:intergenic | 45.0% |
| !!! | AAGAGGGTGTCGTTTTGGAT+GGG | - | chr7.1:56870815-56870834 | None:intergenic | 45.0% |
| !!! | GAAGAAGACGGTGTCGTTTT+GGG | - | chr7.1:56870792-56870811 | None:intergenic | 45.0% |
| !!! | GAAGAAGAGGGTGTCGTTTT+GGG | - | chr7.1:56870840-56870859 | None:intergenic | 45.0% |
| !!! | GTAAACGACGGTGTCGTTTT+GGG | - | chr7.1:56870867-56870886 | None:intergenic | 45.0% |
| !!! | TGTAAACGACGGTGTCGTTT+TGG | - | chr7.1:56870946-56870965 | None:intergenic | 45.0% |
| AACAACCTCGACGAATCCGA+TGG | + | chr7.1:56870696-56870715 | MS.gene20117:CDS | 50.0% | |
| AACCTGGCCGAATAAGGGAA+GGG | + | chr7.1:56872045-56872064 | MS.gene20117:CDS | 50.0% | |
| ATAAGGGAAGGGCAAAGGTC+GGG | + | chr7.1:56872056-56872075 | MS.gene20117:CDS | 50.0% | |
| CGAAGCTTCGAAAGCCGAAA+CGG | - | chr7.1:56871030-56871049 | None:intergenic | 50.0% | |
| GAGGTTAACCTGGCCGAATA+AGG | + | chr7.1:56872039-56872058 | MS.gene20117:CDS | 50.0% | |
| GTCGGTGATGATTTCTTCGG+TGG | - | chr7.1:56870739-56870758 | None:intergenic | 50.0% | |
| TAACCTGGCCGAATAAGGGA+AGG | + | chr7.1:56872044-56872063 | MS.gene20117:CDS | 50.0% | |
| TAGATCGTGCGACGTCGTTT+CGG | - | chr7.1:56870988-56871007 | None:intergenic | 50.0% | |
| TATCTCCACCGCAGGATCAA+AGG | - | chr7.1:56871963-56871982 | None:intergenic | 50.0% | |
| TCGACGACTCCATTGAAGGA+TGG | - | chr7.1:56871820-56871839 | None:intergenic | 50.0% | |
| TGATTTCTTCGGTGGAGTCG+AGG | - | chr7.1:56870731-56870750 | None:intergenic | 50.0% | |
| TTTGATGAGGAAAGCGGGGT+GGG | + | chr7.1:56871475-56871494 | MS.gene20117:CDS | 50.0% | |
| ! | AAGAGGTGCGGAATTCTCCA+TGG | + | chr7.1:56871994-56872013 | MS.gene20117:CDS | 50.0% |
| ! | AAGCGGTGTTGAATTCGTGG+AGG | + | chr7.1:56871864-56871883 | MS.gene20117:CDS | 50.0% |
| ! | ATCCGGGTTGTGAGTTTTCG+AGG | + | chr7.1:56871765-56871784 | MS.gene20117:CDS | 50.0% |
| ! | TTGGGATGGCTAGCTCGATA+TGG | + | chr7.1:56871915-56871934 | MS.gene20117:CDS | 50.0% |
| !! | GTCGGGTTCACTGTTTTTCC+TGG | + | chr7.1:56872073-56872092 | MS.gene20117:CDS | 50.0% |
| !! | GTTTTGGGTGGGGAAGAAGA+GGG | - | chr7.1:56870852-56870871 | None:intergenic | 50.0% |
| !!! | AACGACGGTGTCGTTTTGGT+TGG | - | chr7.1:56870942-56870961 | None:intergenic | 50.0% |
| !!! | AGAGGGTGTCGTTTTGGATG+GGG | - | chr7.1:56870814-56870833 | None:intergenic | 50.0% |
| !!! | GAAGAGGGTGTCGTTTTGGA+TGG | - | chr7.1:56870816-56870835 | None:intergenic | 50.0% |
| !!! | GGAAGAAGACGGTGTCGTTT+TGG | - | chr7.1:56870793-56870812 | None:intergenic | 50.0% |
| !!! | GGAAGAAGAGGGTGTCGTTT+TGG | - | chr7.1:56870841-56870860 | None:intergenic | 50.0% |
| !!! | GGTAAACGACGGTGTCGTTT+TGG | - | chr7.1:56870868-56870887 | None:intergenic | 50.0% |
| !!! | GGTGTCGTTTTGGGTGAAGA+GGG | - | chr7.1:56870831-56870850 | None:intergenic | 50.0% |
| !!! | TGTCGTTTTGGTTGGCGTGT+CGG | - | chr7.1:56870934-56870953 | None:intergenic | 50.0% |
| AGATCGTGCGACGTCGTTTC+GGG | - | chr7.1:56870909-56870928 | None:intergenic | 55.0% | |
| AGCTTCGAAAGCCGAAACGG+CGG | - | chr7.1:56871027-56871046 | None:intergenic | 55.0% | |
| AGGAAAGCGGGGTGGGATTT+AGG | + | chr7.1:56871482-56871501 | MS.gene20117:CDS | 55.0% | |
| ATCGATCTTCGCCGCCGTTT+CGG | + | chr7.1:56871013-56871032 | MS.gene20117:CDS | 55.0% | |
| GAGATCGTGCGACGTCGTTT+CGG | - | chr7.1:56870910-56870929 | None:intergenic | 55.0% | |
| GCCGAATAAGGGAAGGGCAA+AGG | + | chr7.1:56872051-56872070 | MS.gene20117:CDS | 55.0% | |
| GCTGCGAATGCTGTTCATCC+GGG | + | chr7.1:56871509-56871528 | MS.gene20117:CDS | 55.0% | |
| GGCTCATGCCTTTGATCCTG+CGG | + | chr7.1:56871952-56871971 | MS.gene20117:CDS | 55.0% | |
| GGCTGCGAATGCTGTTCATC+CGG | + | chr7.1:56871508-56871527 | MS.gene20117:CDS | 55.0% | |
| GTTTGATGAGGAAAGCGGGG+TGG | + | chr7.1:56871474-56871493 | MS.gene20117:CDS | 55.0% | |
| TCATGCCTTTGATCCTGCGG+TGG | + | chr7.1:56871955-56871974 | MS.gene20117:CDS | 55.0% | |
| ! | AGCGGGGTGGGATTTAGGTT+TGG | + | chr7.1:56871487-56871506 | MS.gene20117:CDS | 55.0% |
| ! | GTCGTTTCGGGTAGTGGTGA+TGG | - | chr7.1:56870975-56870994 | None:intergenic | 55.0% |
| !! | CGTTTTGGGTGGGGAAGAAG+AGG | - | chr7.1:56870853-56870872 | None:intergenic | 55.0% |
| !!! | AACGACGGTGTCGTTTTGGG+TGG | - | chr7.1:56870864-56870883 | None:intergenic | 55.0% |
| !!! | ACGACGGTGTCGTTTTGGGT+GGG | - | chr7.1:56870863-56870882 | None:intergenic | 55.0% |
| !!! | CGGTGTCGTTTTGGGTGGAT+CGG | - | chr7.1:56870784-56870803 | None:intergenic | 55.0% |
| !!! | GAAGACGGTGTCGTTTTGGG+TGG | - | chr7.1:56870789-56870808 | None:intergenic | 55.0% |
| !!! | GGGTGAAGAGGGTGTCGTTT+TGG | - | chr7.1:56870820-56870839 | None:intergenic | 55.0% |
| !!! | GGGTGTCGTTTTGGGTGAAG+AGG | - | chr7.1:56870832-56870851 | None:intergenic | 55.0% |
| !!! | GGTGTCGTTTTGGGTGGATC+GGG | - | chr7.1:56870783-56870802 | None:intergenic | 55.0% |
| TGCCCTTCCCTTATTCGGCC+AGG | - | chr7.1:56872050-56872069 | None:intergenic | 60.0% | |
| ! | TGCGACGTCGTTTCGGGTAG+TGG | - | chr7.1:56870903-56870922 | None:intergenic | 60.0% |
| !!! | CGACGGTGTCGTTTTGGGTG+GGG | - | chr7.1:56870862-56870881 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 56870585 | 56872162 | 56870585 | ID=MS.gene20117 |
| chr7.1 | mRNA | 56870585 | 56872162 | 56870585 | ID=MS.gene20117.t1;Parent=MS.gene20117 |
| chr7.1 | exon | 56870585 | 56872162 | 56870585 | ID=MS.gene20117.t1.exon1;Parent=MS.gene20117.t1 |
| chr7.1 | CDS | 56870585 | 56872162 | 56870585 | ID=cds.MS.gene20117.t1;Parent=MS.gene20117.t1 |
| Gene Sequence |
| Protein sequence |
