Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052898.t1 | XP_013461326.1 | 98.7 | 391 | 5 | 0 | 1 | 391 | 1 | 391 | 4.90E-225 | 790 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052898.t1 | A5AEM3 | 74.4 | 390 | 100 | 0 | 1 | 390 | 1 | 390 | 1.5e-177 | 623.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052898.t1 | A0A072V123 | 98.7 | 391 | 5 | 0 | 1 | 391 | 1 | 391 | 3.6e-225 | 790.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052898 | MS.gene058840 | 0.801062 | 1.07E-48 | -1.69E-46 |
| MS.gene052898 | MS.gene06074 | 0.801192 | 1.01E-48 | -1.69E-46 |
| MS.gene052898 | MS.gene06136 | 0.801423 | 9.07E-49 | -1.69E-46 |
| MS.gene052898 | MS.gene55801 | 0.803273 | 3.77E-49 | -1.69E-46 |
| MS.gene052898 | MS.gene71904 | 0.800222 | 1.59E-48 | -1.69E-46 |
| MS.gene052898 | MS.gene77223 | 0.814373 | 1.59E-51 | -1.69E-46 |
| MS.gene052898 | MS.gene96584 | 0.82128 | 4.39E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052898.t1 | MTR_3g088675 | 98.721 | 391 | 5 | 0 | 1 | 391 | 1 | 391 | 0.0 | 801 |
| MS.gene052898.t1 | MTR_7g084300 | 70.180 | 389 | 116 | 0 | 1 | 389 | 1 | 389 | 0.0 | 606 |
| MS.gene052898.t1 | MTR_3g083910 | 70.207 | 386 | 115 | 0 | 1 | 386 | 1 | 386 | 0.0 | 595 |
| MS.gene052898.t1 | MTR_3g083920 | 68.041 | 388 | 124 | 0 | 1 | 388 | 1 | 388 | 0.0 | 581 |
| MS.gene052898.t1 | MTR_5g007713 | 66.067 | 389 | 132 | 0 | 1 | 389 | 1 | 389 | 0.0 | 578 |
| MS.gene052898.t1 | MTR_5g007717 | 65.810 | 389 | 133 | 0 | 1 | 389 | 1 | 389 | 0.0 | 576 |
| MS.gene052898.t1 | MTR_7g016800 | 65.810 | 389 | 133 | 0 | 1 | 389 | 1 | 389 | 0.0 | 573 |
| MS.gene052898.t1 | MTR_7g016700 | 65.810 | 389 | 133 | 0 | 1 | 389 | 1 | 389 | 0.0 | 573 |
| MS.gene052898.t1 | MTR_7g016720 | 65.810 | 389 | 133 | 0 | 1 | 389 | 1 | 389 | 0.0 | 573 |
| MS.gene052898.t1 | MTR_7g016820 | 65.553 | 389 | 134 | 0 | 1 | 389 | 1 | 389 | 0.0 | 572 |
| MS.gene052898.t1 | MTR_1g098140 | 65.553 | 389 | 134 | 0 | 1 | 389 | 1 | 389 | 0.0 | 572 |
| MS.gene052898.t1 | MTR_5g007730 | 65.296 | 389 | 135 | 0 | 1 | 389 | 1 | 389 | 0.0 | 570 |
| MS.gene052898.t1 | MTR_7g016780 | 65.296 | 389 | 135 | 0 | 1 | 389 | 1 | 389 | 0.0 | 569 |
| MS.gene052898.t1 | MTR_1g097935 | 65.296 | 389 | 135 | 0 | 1 | 389 | 1 | 389 | 0.0 | 568 |
| MS.gene052898.t1 | MTR_5g007760 | 65.039 | 389 | 136 | 0 | 1 | 389 | 1 | 389 | 0.0 | 568 |
| MS.gene052898.t1 | MTR_1g097910 | 65.296 | 389 | 135 | 0 | 1 | 389 | 1 | 389 | 0.0 | 568 |
| MS.gene052898.t1 | MTR_2g058470 | 65.553 | 389 | 134 | 0 | 1 | 389 | 1 | 389 | 0.0 | 562 |
| MS.gene052898.t1 | MTR_3g086260 | 64.249 | 386 | 138 | 0 | 1 | 386 | 1 | 386 | 0.0 | 545 |
| MS.gene052898.t1 | MTR_7g113405 | 66.777 | 301 | 100 | 0 | 89 | 389 | 3 | 303 | 2.61e-158 | 447 |
| MS.gene052898.t1 | MTR_5g007740 | 62.577 | 326 | 122 | 0 | 64 | 389 | 1 | 326 | 2.29e-156 | 443 |
| MS.gene052898.t1 | MTR_5g007723 | 54.408 | 397 | 132 | 5 | 12 | 389 | 32 | 398 | 6.15e-150 | 430 |
| MS.gene052898.t1 | MTR_5g007770 | 57.667 | 300 | 94 | 2 | 70 | 369 | 1 | 267 | 2.35e-126 | 365 |
| MS.gene052898.t1 | MTR_3g088670 | 46.907 | 388 | 192 | 7 | 10 | 386 | 2 | 386 | 1.35e-124 | 365 |
| MS.gene052898.t1 | MTR_4g075560 | 40.426 | 376 | 215 | 4 | 11 | 382 | 13 | 383 | 1.85e-97 | 296 |
| MS.gene052898.t1 | MTR_4g078730 | 38.441 | 372 | 222 | 2 | 15 | 386 | 24 | 388 | 3.24e-94 | 288 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052898.t1 | AT5G13930 | 69.792 | 384 | 115 | 1 | 4 | 386 | 9 | 392 | 0.0 | 588 |
| MS.gene052898.t1 | AT4G34850 | 39.426 | 383 | 228 | 3 | 9 | 389 | 12 | 392 | 4.55e-99 | 300 |
| MS.gene052898.t1 | AT4G00040 | 38.933 | 375 | 221 | 4 | 14 | 386 | 16 | 384 | 2.61e-94 | 288 |
| MS.gene052898.t1 | AT1G02050 | 39.572 | 374 | 218 | 4 | 15 | 386 | 24 | 391 | 5.28e-90 | 277 |
| MS.gene052898.t1 | AT4G34850 | 39.062 | 320 | 192 | 2 | 72 | 389 | 1 | 319 | 1.54e-81 | 253 |
Find 82 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATATGTTGGGGTGTTCTTTC+AGG | 0.147202 | 3.1:+71794612 | None:intergenic |
| CTGATTGGAATTCTTTGTTT+TGG | 0.233393 | 3.1:-71793346 | MS.gene052898:CDS |
| CAACCGGTGAAGGACTAAAA+TGG | 0.237482 | 3.1:-71793145 | MS.gene052898:CDS |
| AGATGAGTTATCTCTGATTT+TGG | 0.243050 | 3.1:+71794482 | None:intergenic |
| GGCTGGACCACGAGCTCTTT+GGG | 0.266908 | 3.1:+71795455 | None:intergenic |
| TCCTTTATTTCATCTTGTTT+CGG | 0.276839 | 3.1:-71794138 | MS.gene052898:CDS |
| ATCTAAATCCATCCACTAAA+AGG | 0.277780 | 3.1:-71794394 | MS.gene052898:CDS |
| CTTACATATACGCTTCAATT+TGG | 0.281723 | 3.1:+71795323 | None:intergenic |
| TCAATCCTCTTAATTATTGC+AGG | 0.295802 | 3.1:+71793305 | None:intergenic |
| ATTATTCTCAGCTAGATCTT+TGG | 0.297192 | 3.1:+71794319 | None:intergenic |
| AAAATTGTACCTTCAGAGTT+TGG | 0.303132 | 3.1:+71794098 | None:intergenic |
| TGAGATGAGAAGAAGGTCTA+TGG | 0.306306 | 3.1:-71793183 | MS.gene052898:CDS |
| TGCTTGTGTGATATTTATAT+TGG | 0.311989 | 3.1:-71793207 | MS.gene052898:CDS |
| AAACACTTGGATTCGTTAGT+TGG | 0.343024 | 3.1:-71794230 | MS.gene052898:CDS |
| TGGCTGGACCACGAGCTCTT+TGG | 0.344653 | 3.1:+71795454 | None:intergenic |
| GATAATGTTCCAAGTTTGAT+TGG | 0.356163 | 3.1:-71793419 | MS.gene052898:CDS |
| CTTTCAGGATTTCTTCAGTT+AGG | 0.362202 | 3.1:+71794627 | None:intergenic |
| GAGAAGAAGGTCTATGGAAG+AGG | 0.366244 | 3.1:-71793177 | MS.gene052898:CDS |
| TTGAGTCATGTGGTCACTTT+TGG | 0.370300 | 3.1:+71795353 | None:intergenic |
| CAGTAAAATGGCATACTTAG+AGG | 0.380073 | 3.1:-71795490 | None:intergenic |
| AACCGGTGAAGGACTAAAAT+GGG | 0.386445 | 3.1:-71793144 | MS.gene052898:CDS |
| ACCCATTGGGAATTACTGAT+TGG | 0.389300 | 3.1:-71793361 | MS.gene052898:CDS |
| GCCGAAACAAGATGAAATAA+AGG | 0.403766 | 3.1:+71794137 | None:intergenic |
| TGCAGTACCAATGGCCAGTA+TGG | 0.405782 | 3.1:+71795431 | None:intergenic |
| TCTTCGTAAGTTGATATGTT+GGG | 0.407727 | 3.1:+71794599 | None:intergenic |
| ATTAAAAGCCCTAAAAGAAT+GGG | 0.410029 | 3.1:-71794510 | MS.gene052898:CDS |
| TTCTTCGTAAGTTGATATGT+TGG | 0.438007 | 3.1:+71794598 | None:intergenic |
| CATTAAAAGCCCTAAAAGAA+TGG | 0.447370 | 3.1:-71794511 | MS.gene052898:CDS |
| GGACGTTCAAGTGTTGTGTC+TGG | 0.454476 | 3.1:+71794158 | None:intergenic |
| TCGTGGTCCAGCCACCATAC+TGG | 0.462383 | 3.1:-71795445 | MS.gene052898:CDS |
| AGAAGAAGGTCTATGGAAGA+GGG | 0.466093 | 3.1:-71793176 | MS.gene052898:CDS |
| TTAATTATTGCAGGACCACC+AGG | 0.471368 | 3.1:+71793314 | None:intergenic |
| TATGTCTTGGCGTACGTTGA+GGG | 0.472735 | 3.1:+71794571 | None:intergenic |
| AATTAAGAGGATTGAAGAAA+CGG | 0.479123 | 3.1:-71793297 | MS.gene052898:CDS |
| TACCACCAAGGTTGTTATGC+TGG | 0.487367 | 3.1:-71794362 | MS.gene052898:CDS |
| AAGAGGATTGAAGAAACGGT+TGG | 0.495072 | 3.1:-71793293 | MS.gene052898:CDS |
| ATATTCTCACCAATCAAACT+TGG | 0.503125 | 3.1:+71793410 | None:intergenic |
| GATTGGTAAATGCAATTGAC+TGG | 0.503481 | 3.1:+71795405 | None:intergenic |
| CTTCTTCAACTAATATGTCT+TGG | 0.506389 | 3.1:+71794558 | None:intergenic |
| TCCAATCAGTAATTCCCAAT+GGG | 0.508827 | 3.1:+71793360 | None:intergenic |
| GAAGAGGGGAAAACAACAAC+CGG | 0.513774 | 3.1:-71793161 | MS.gene052898:CDS |
| TATTGGATGAGATGAGAAGA+AGG | 0.519911 | 3.1:-71793190 | MS.gene052898:CDS |
| GATCTAGCTGAGAATAATGT+TGG | 0.522501 | 3.1:-71794314 | MS.gene052898:CDS |
| CTTCGTAAGTTGATATGTTG+GGG | 0.523491 | 3.1:+71794600 | None:intergenic |
| AATAATCAGTAAAATCAGAT+TGG | 0.525517 | 3.1:+71795388 | None:intergenic |
| ATCTTTGGCAAGACGAAGAA+CGG | 0.525822 | 3.1:+71794334 | None:intergenic |
| ATGGTTTCCATGGTCAAGCC+AGG | 0.528547 | 3.1:+71793101 | None:intergenic |
| TTAGTGAACATGGTCTATGT+TGG | 0.543089 | 3.1:+71793064 | None:intergenic |
| GTTGAAGAAGTGCCAAAGCT+AGG | 0.544378 | 3.1:-71794545 | MS.gene052898:CDS |
| ATATGTCTTGGCGTACGTTG+AGG | 0.545213 | 3.1:+71794570 | None:intergenic |
| ACTTCCGGAGTTGACATGCC+TGG | 0.548136 | 3.1:-71794446 | MS.gene052898:CDS |
| ATGCAAAGCAATGGTTTCCA+TGG | 0.560009 | 3.1:+71793091 | None:intergenic |
| AGTAAAATGGCATACTTAGA+GGG | 0.565242 | 3.1:-71795489 | None:intergenic |
| TGAAGGACACTTGCGTGAGG+TGG | 0.567329 | 3.1:-71793462 | MS.gene052898:CDS |
| CCAATGGCCAGTATGGTGGC+TGG | 0.569810 | 3.1:+71795438 | None:intergenic |
| AGCACCAGGCATGTCAACTC+CGG | 0.569943 | 3.1:+71794442 | None:intergenic |
| TCTTGGCGTACGTTGAGGGA+TGG | 0.570631 | 3.1:+71794575 | None:intergenic |
| GAAGAAGGTCTATGGAAGAG+GGG | 0.574893 | 3.1:-71793175 | MS.gene052898:CDS |
| CACCAGCATAACAACCTTGG+TGG | 0.575612 | 3.1:+71794360 | None:intergenic |
| GTGGTCCTGCAATAATTAAG+AGG | 0.577617 | 3.1:-71793310 | MS.gene052898:CDS |
| GGGAAAACAACAACCGGTGA+AGG | 0.579516 | 3.1:-71793155 | MS.gene052898:CDS |
| GACTGGAGTTGCAGTACCAA+TGG | 0.580482 | 3.1:+71795422 | None:intergenic |
| TTCCAATCAGTAATTCCCAA+TGG | 0.580607 | 3.1:+71793359 | None:intergenic |
| GAAGGACACTTGCGTGAGGT+GGG | 0.582214 | 3.1:-71793461 | MS.gene052898:CDS |
| GGTGCTTCATCTGTGATCGT+TGG | 0.587633 | 3.1:-71794188 | MS.gene052898:CDS |
| CCAGCCACCATACTGGCCAT+TGG | 0.591049 | 3.1:-71795438 | MS.gene052898:CDS |
| ATTTGGTCCTGGCTTGACCA+TGG | 0.593007 | 3.1:-71793108 | MS.gene052898:CDS |
| ATGAGTTGATAATCAGCACC+AGG | 0.598022 | 3.1:+71794428 | None:intergenic |
| TTCCACCAGCATAACAACCT+TGG | 0.602278 | 3.1:+71794357 | None:intergenic |
| GTTGGCGCTATGCAAAGCAA+TGG | 0.612636 | 3.1:+71793082 | None:intergenic |
| ACGATTCTACCAAACTCTGA+AGG | 0.616163 | 3.1:-71794107 | MS.gene052898:intron |
| AGTACCAATGGCCAGTATGG+TGG | 0.643978 | 3.1:+71795434 | None:intergenic |
| CACCAAGGTTGTTATGCTGG+TGG | 0.646872 | 3.1:-71794359 | MS.gene052898:CDS |
| TGGCCTTGAGTTGAGTCATG+TGG | 0.647349 | 3.1:+71795343 | None:intergenic |
| TGACCACATGACTCAACTCA+AGG | 0.651817 | 3.1:-71795346 | MS.gene052898:CDS |
| AGAGAGTCCCAAAGAGCTCG+TGG | 0.660715 | 3.1:-71795462 | MS.gene052898:CDS |
| TAATTATTGCAGGACCACCA+GGG | 0.666521 | 3.1:+71793315 | None:intergenic |
| TTAAAAGCCCTAAAAGAATG+GGG | 0.668431 | 3.1:-71794509 | MS.gene052898:CDS |
| TTATTTCAGAACACACAACA+AGG | 0.673372 | 3.1:+71794282 | None:intergenic |
| AGGTTCATGTTATACCACCA+AGG | 0.690009 | 3.1:-71794374 | MS.gene052898:CDS |
| ACCGGTGAAGGACTAAAATG+GGG | 0.697537 | 3.1:-71793143 | MS.gene052898:CDS |
| TATTGAAGGACACTTGCGTG+AGG | 0.726035 | 3.1:-71793465 | MS.gene052898:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATATATATATATAT+GGG | - | chr3.1:71794563-71794582 | MS.gene052898:CDS | 0.0% |
| !! | TATATATATATATATATATA+TGG | - | chr3.1:71794562-71794581 | MS.gene052898:CDS | 0.0% |
| !! | ATATATATATATATATATGG+GGG | - | chr3.1:71794605-71794624 | MS.gene052898:CDS | 10.0% |
| !! | TAAAAAAAAAAATACTGTTA+TGG | + | chr3.1:71793509-71793528 | None:intergenic | 10.0% |
| !! | TAATTAGAATATAAACAAAA+TGG | - | chr3.1:71794897-71794916 | MS.gene052898:intron | 10.0% |
| !! | TTAAAGACATAATATATATA+GGG | + | chr3.1:71795000-71795019 | None:intergenic | 10.0% |
| !! | TTTAAAGACATAATATATAT+AGG | + | chr3.1:71795001-71795020 | None:intergenic | 10.0% |
| !!! | ACTTTTTTTTTTTTTACAAT+AGG | + | chr3.1:71793809-71793828 | None:intergenic | 10.0% |
| !!! | ATTATTAGTCTTATATATAT+TGG | + | chr3.1:71793295-71793314 | None:intergenic | 10.0% |
| !!! | CATTTTTATAAGTATTATTA+AGG | - | chr3.1:71794700-71794719 | MS.gene052898:intron | 10.0% |
| !!! | TATATATTATGTCTTTAAAA+CGG | - | chr3.1:71795002-71795021 | MS.gene052898:intron | 10.0% |
| !!! | TCTAATTAATTTTAAATAGA+AGG | + | chr3.1:71794885-71794904 | None:intergenic | 10.0% |
| !! | GGTGTAATATAAAAAAATAA+TGG | + | chr3.1:71793488-71793507 | None:intergenic | 15.0% |
| !! | TAAAGACATAATATATATAG+GGG | + | chr3.1:71794999-71795018 | None:intergenic | 15.0% |
| !!! | ACAATTAAATAAGATTTTAG+TGG | + | chr3.1:71793324-71793343 | None:intergenic | 15.0% |
| !!! | ATTAATTTTGTTATCCAAAA+AGG | - | chr3.1:71794488-71794507 | MS.gene052898:CDS | 15.0% |
| !!! | CTATACATATTTTTCTTTAT+TGG | - | chr3.1:71793853-71793872 | MS.gene052898:intron | 15.0% |
| !!! | CTTTTTTGTTTCTTTTTTTA+AGG | - | chr3.1:71794831-71794850 | MS.gene052898:intron | 15.0% |
| !!! | TGTTTTAGTAAATTATAAGT+GGG | - | chr3.1:71794920-71794939 | MS.gene052898:intron | 15.0% |
| !!! | TTTCTTTTATTTTCTTTTGA+AGG | - | chr3.1:71795056-71795075 | MS.gene052898:intron | 15.0% |
| !!! | TTTTTTTTACAATAGGAATT+AGG | + | chr3.1:71793802-71793821 | None:intergenic | 15.0% |
| !! | AAAGACATAATATATATAGG+GGG | + | chr3.1:71794998-71795017 | None:intergenic | 20.0% |
| !! | AATAATCAGTAAAATCAGAT+TGG | + | chr3.1:71793162-71793181 | None:intergenic | 20.0% |
| !! | ATTTATTGATGAATTCATGA+AGG | + | chr3.1:71793723-71793742 | None:intergenic | 20.0% |
| !!! | ACTTTTAAGGAAACAATATT+TGG | + | chr3.1:71794770-71794789 | None:intergenic | 20.0% |
| !!! | CATGTCTTAGTTTAAAATAT+TGG | + | chr3.1:71793539-71793558 | None:intergenic | 20.0% |
| !!! | CTACTTTTATTTTATAAAGC+AGG | - | chr3.1:71793613-71793632 | MS.gene052898:intron | 20.0% |
| !!! | GTAATAAAGACAAACTTTTA+AGG | + | chr3.1:71794783-71794802 | None:intergenic | 20.0% |
| !!! | GTGTTTTAGTAAATTATAAG+TGG | - | chr3.1:71794919-71794938 | MS.gene052898:intron | 20.0% |
| ! | AATGAGTGTAAATAATCAAG+TGG | + | chr3.1:71794684-71794703 | None:intergenic | 25.0% |
| ! | AATTAAGAGGATTGAAGAAA+CGG | - | chr3.1:71795250-71795269 | MS.gene052898:intron | 25.0% |
| ! | AATTGTGATGAAGTAAAAGA+CGG | - | chr3.1:71793691-71793710 | MS.gene052898:intron | 25.0% |
| ! | ATGAGTGTAAATAATCAAGT+GGG | + | chr3.1:71794683-71794702 | None:intergenic | 25.0% |
| ! | ATTAAAAGCCCTAAAAGAAT+GGG | - | chr3.1:71794037-71794056 | MS.gene052898:intron | 25.0% |
| ! | TGCTTGTGTGATATTTATAT+TGG | - | chr3.1:71795340-71795359 | MS.gene052898:CDS | 25.0% |
| ! | TTGGATAACAAAATTAATCC+TGG | + | chr3.1:71794486-71794505 | None:intergenic | 25.0% |
| !! | AATATTTGGAATGATGAAAG+TGG | + | chr3.1:71794756-71794775 | None:intergenic | 25.0% |
| !! | ATATTTGGAATGATGAAAGT+GGG | + | chr3.1:71794755-71794774 | None:intergenic | 25.0% |
| !! | TAATGGACATGACAAATAAA+TGG | + | chr3.1:71793471-71793490 | None:intergenic | 25.0% |
| !! | TCCTTTATTTCATCTTGTTT+CGG | - | chr3.1:71794409-71794428 | MS.gene052898:CDS | 25.0% |
| !!! | CAATTTTATTTGTGTTTACC+AGG | - | chr3.1:71794465-71794484 | MS.gene052898:CDS | 25.0% |
| !!! | TGATTGGAATTCTTTGTTTT+GGG | - | chr3.1:71795202-71795221 | MS.gene052898:intron | 25.0% |
| !!! | TTTCTTTATTGGTTCTGAAT+AGG | - | chr3.1:71793864-71793883 | MS.gene052898:intron | 25.0% |
| AAAAGACAATGACATGCTTA+AGG | + | chr3.1:71794816-71794835 | None:intergenic | 30.0% | |
| AAAATTGTACCTTCAGAGTT+TGG | + | chr3.1:71794452-71794471 | None:intergenic | 30.0% | |
| ACATGTGAATAAAATGCAAG+CGG | + | chr3.1:71794535-71794554 | None:intergenic | 30.0% | |
| ATATTCTCACCAATCAAACT+TGG | + | chr3.1:71795140-71795159 | None:intergenic | 30.0% | |
| ATCTAAATCCATCCACTAAA+AGG | - | chr3.1:71794153-71794172 | MS.gene052898:CDS | 30.0% | |
| ATTATTCTCAGCTAGATCTT+TGG | + | chr3.1:71794231-71794250 | None:intergenic | 30.0% | |
| CATTAAAAGCCCTAAAAGAA+TGG | - | chr3.1:71794036-71794055 | MS.gene052898:intron | 30.0% | |
| CTTACATATACGCTTCAATT+TGG | + | chr3.1:71793227-71793246 | None:intergenic | 30.0% | |
| CTTCTTCAACTAATATGTCT+TGG | + | chr3.1:71793992-71794011 | None:intergenic | 30.0% | |
| GATAATGTTCCAAGTTTGAT+TGG | - | chr3.1:71795128-71795147 | MS.gene052898:intron | 30.0% | |
| TAAGACATGCCAATTTGATT+TGG | - | chr3.1:71793550-71793569 | MS.gene052898:intron | 30.0% | |
| TATATGTAAGCTCATGCATA+GGG | - | chr3.1:71793237-71793256 | MS.gene052898:CDS | 30.0% | |
| TCAATCCTCTTAATTATTGC+AGG | + | chr3.1:71795245-71795264 | None:intergenic | 30.0% | |
| TTAAAAGCCCTAAAAGAATG+GGG | - | chr3.1:71794038-71794057 | MS.gene052898:intron | 30.0% | |
| TTATTTCAGAACACACAACA+AGG | + | chr3.1:71794268-71794287 | None:intergenic | 30.0% | |
| ! | AAATGCATGAAAGCATGAAT+TGG | + | chr3.1:71793414-71793433 | None:intergenic | 30.0% |
| ! | AAGACATGCCAATTTGATTT+GGG | - | chr3.1:71793551-71793570 | MS.gene052898:intron | 30.0% |
| ! | AGATGAGTTATCTCTGATTT+TGG | + | chr3.1:71794068-71794087 | None:intergenic | 30.0% |
| ! | CTCATATTTTGTTCAACTTC+CGG | - | chr3.1:71794086-71794105 | MS.gene052898:intron | 30.0% |
| ! | GAATCCAAGTGTTTTTCATT+GGG | + | chr3.1:71794311-71794330 | None:intergenic | 30.0% |
| ! | GTATAACATGAACCTTTTAG+TGG | + | chr3.1:71794168-71794187 | None:intergenic | 30.0% |
| ! | GTCTTTTACTTCATCACAAT+TGG | + | chr3.1:71793692-71793711 | None:intergenic | 30.0% |
| !! | AAACATGTTTTGAGTGAGTA+TGG | - | chr3.1:71795305-71795324 | MS.gene052898:intron | 30.0% |
| !! | CTGATTGGAATTCTTTGTTT+TGG | - | chr3.1:71795201-71795220 | MS.gene052898:intron | 30.0% |
| !! | TCTTCGTAAGTTGATATGTT+GGG | + | chr3.1:71793951-71793970 | None:intergenic | 30.0% |
| !! | TTCTTCGTAAGTTGATATGT+TGG | + | chr3.1:71793952-71793971 | None:intergenic | 30.0% |
| !!! | ATAACTGTTGTTACTTTTCG+TGG | - | chr3.1:71794284-71794303 | MS.gene052898:CDS | 30.0% |
| !!! | TAACTGTTGTTACTTTTCGT+GGG | - | chr3.1:71794285-71794304 | MS.gene052898:CDS | 30.0% |
| AAACACTTGGATTCGTTAGT+TGG | - | chr3.1:71794317-71794336 | MS.gene052898:CDS | 35.0% | |
| AAGTGGGTGTAAATTAGTGA+AGG | + | chr3.1:71794739-71794758 | None:intergenic | 35.0% | |
| ACACCAACCTAAAAACACTA+AGG | + | chr3.1:71794965-71794984 | None:intergenic | 35.0% | |
| CTTTCAGGATTTCTTCAGTT+AGG | + | chr3.1:71793923-71793942 | None:intergenic | 35.0% | |
| GATCTAGCTGAGAATAATGT+TGG | - | chr3.1:71794233-71794252 | MS.gene052898:CDS | 35.0% | |
| GATTGGTAAATGCAATTGAC+TGG | + | chr3.1:71793145-71793164 | None:intergenic | 35.0% | |
| GCCGAAACAAGATGAAATAA+AGG | + | chr3.1:71794413-71794432 | None:intergenic | 35.0% | |
| GTATATGTAAGCTCATGCAT+AGG | - | chr3.1:71793236-71793255 | MS.gene052898:CDS | 35.0% | |
| TATTGCAGCCCAAATCAAAT+TGG | + | chr3.1:71793562-71793581 | None:intergenic | 35.0% | |
| TATTGGATGAGATGAGAAGA+AGG | - | chr3.1:71795357-71795376 | MS.gene052898:CDS | 35.0% | |
| TCCAATCAGTAATTCCCAAT+GGG | + | chr3.1:71795190-71795209 | None:intergenic | 35.0% | |
| TTAGTGAACATGGTCTATGT+TGG | + | chr3.1:71795486-71795505 | None:intergenic | 35.0% | |
| TTCCAATCAGTAATTCCCAA+TGG | + | chr3.1:71795191-71795210 | None:intergenic | 35.0% | |
| ! | AACATGAACCTTTTAGTGGA+TGG | + | chr3.1:71794164-71794183 | None:intergenic | 35.0% |
| ! | ACTTGCACCTTAGTGTTTTT+AGG | - | chr3.1:71794955-71794974 | MS.gene052898:intron | 35.0% |
| ! | ACTTGCACCTTAGTGTTTTT+AGG | + | chr3.1:71794974-71794955 | None:intergenic | 35.0% |
| ! | AGAAGAAACTTTTCACCCAT+TGG | - | chr3.1:71795172-71795191 | MS.gene052898:intron | 35.0% |
| ! | CATGTATATGTGCACTTTTG+GGG | + | chr3.1:71793373-71793392 | None:intergenic | 35.0% |
| ! | CGAATCCAAGTGTTTTTCAT+TGG | + | chr3.1:71794312-71794331 | None:intergenic | 35.0% |
| ! | GAAGAAACTTTTCACCCATT+GGG | - | chr3.1:71795173-71795192 | MS.gene052898:intron | 35.0% |
| ! | GCATGTATATGTGCACTTTT+GGG | + | chr3.1:71793374-71793393 | None:intergenic | 35.0% |
| ! | TGCATGTATATGTGCACTTT+TGG | + | chr3.1:71793375-71793394 | None:intergenic | 35.0% |
| ! | TTAGTTGGACAAGCACTTTT+TGG | - | chr3.1:71794332-71794351 | MS.gene052898:CDS | 35.0% |
| !! | AATTTGATTTGGGCTGCAAT+AGG | - | chr3.1:71793561-71793580 | MS.gene052898:intron | 35.0% |
| !! | CTAAAATGGGGTGTTTTGTT+TGG | - | chr3.1:71795416-71795435 | MS.gene052898:CDS | 35.0% |
| !! | CTTCGTAAGTTGATATGTTG+GGG | + | chr3.1:71793950-71793969 | None:intergenic | 35.0% |
| !!! | TCTTTTGAAGGTGCTATTGA+AGG | - | chr3.1:71795068-71795087 | MS.gene052898:intron | 35.0% |
| AACCGGTGAAGGACTAAAAT+GGG | - | chr3.1:71795403-71795422 | MS.gene052898:CDS | 40.0% | |
| AAGAGGATTGAAGAAACGGT+TGG | - | chr3.1:71795254-71795273 | MS.gene052898:intron | 40.0% | |
| ACCCATTGGGAATTACTGAT+TGG | - | chr3.1:71795186-71795205 | MS.gene052898:intron | 40.0% | |
| ACGATTCTACCAAACTCTGA+AGG | - | chr3.1:71794440-71794459 | MS.gene052898:CDS | 40.0% | |
| AGAAGAAGGTCTATGGAAGA+GGG | - | chr3.1:71795371-71795390 | MS.gene052898:CDS | 40.0% | |
| AGGTTCATGTTATACCACCA+AGG | - | chr3.1:71794173-71794192 | MS.gene052898:CDS | 40.0% | |
| AGTGCACATATACATGCATG+CGG | - | chr3.1:71793377-71793396 | MS.gene052898:CDS | 40.0% | |
| ATCTTTGGCAAGACGAAGAA+CGG | + | chr3.1:71794216-71794235 | None:intergenic | 40.0% | |
| ATGCAAAGCAATGGTTTCCA+TGG | + | chr3.1:71795459-71795478 | None:intergenic | 40.0% | |
| GTGGTCCTGCAATAATTAAG+AGG | - | chr3.1:71795237-71795256 | MS.gene052898:intron | 40.0% | |
| TAATTATTGCAGGACCACCA+GGG | + | chr3.1:71795235-71795254 | None:intergenic | 40.0% | |
| TGAGATGAGAAGAAGGTCTA+TGG | - | chr3.1:71795364-71795383 | MS.gene052898:CDS | 40.0% | |
| TGTTATCCAAAAAGGCCTAG+CGG | - | chr3.1:71794496-71794515 | MS.gene052898:CDS | 40.0% | |
| TTAATTATTGCAGGACCACC+AGG | + | chr3.1:71795236-71795255 | None:intergenic | 40.0% | |
| ! | ATATGTTGGGGTGTTCTTTC+AGG | + | chr3.1:71793938-71793957 | None:intergenic | 40.0% |
| ! | TGGTCTTCCCCATTCTTTTA+GGG | + | chr3.1:71794048-71794067 | None:intergenic | 40.0% |
| !! | ATGAGTTGATAATCAGCACC+AGG | + | chr3.1:71794122-71794141 | None:intergenic | 40.0% |
| !! | TTGAGTCATGTGGTCACTTT+TGG | + | chr3.1:71793197-71793216 | None:intergenic | 40.0% |
| !! | TTGGTCTTCCCCATTCTTTT+AGG | + | chr3.1:71794049-71794068 | None:intergenic | 40.0% |
| !!! | ATATGTGCACTTTTGGGGTA+TGG | + | chr3.1:71793368-71793387 | None:intergenic | 40.0% |
| !!! | GCACCTTAGTGTTTTTAGGT+GGG | + | chr3.1:71794978-71794959 | None:intergenic | 40.0% |
| !!! | GCACCTTAGTGTTTTTAGGT+TGG | - | chr3.1:71794959-71794978 | MS.gene052898:intron | 40.0% |
| !!! | GTTTTGTTTGGATTTGGTCC+TGG | - | chr3.1:71795428-71795447 | MS.gene052898:CDS | 40.0% |
| !!! | TGCACCTTAGTGTTTTTAGG+TGG | + | chr3.1:71794977-71794958 | None:intergenic | 40.0% |
| !!! | TGGGGTGTTTTGTTTGGATT+TGG | - | chr3.1:71795422-71795441 | MS.gene052898:CDS | 40.0% |
| ACCGGTGAAGGACTAAAATG+GGG | - | chr3.1:71795404-71795423 | MS.gene052898:CDS | 45.0% | |
| ACGCCCACCTAAAAACACTA+AGG | - | chr3.1:71794638-71794657 | MS.gene052898:CDS | 45.0% | |
| ATATGTCTTGGCGTACGTTG+AGG | + | chr3.1:71793980-71793999 | None:intergenic | 45.0% | |
| CAACCGGTGAAGGACTAAAA+TGG | - | chr3.1:71795402-71795421 | MS.gene052898:CDS | 45.0% | |
| GAAGAAGGTCTATGGAAGAG+GGG | - | chr3.1:71795372-71795391 | MS.gene052898:CDS | 45.0% | |
| GAAGAGGGGAAAACAACAAC+CGG | - | chr3.1:71795386-71795405 | MS.gene052898:CDS | 45.0% | |
| GAGAAGAAGGTCTATGGAAG+AGG | - | chr3.1:71795370-71795389 | MS.gene052898:CDS | 45.0% | |
| TACCACCAAGGTTGTTATGC+TGG | - | chr3.1:71794185-71794204 | MS.gene052898:CDS | 45.0% | |
| TATGTCTTGGCGTACGTTGA+GGG | + | chr3.1:71793979-71793998 | None:intergenic | 45.0% | |
| TATTGAAGGACACTTGCGTG+AGG | - | chr3.1:71795082-71795101 | MS.gene052898:intron | 45.0% | |
| TGACCACATGACTCAACTCA+AGG | - | chr3.1:71793201-71793220 | MS.gene052898:CDS | 45.0% | |
| TGGGCCCAATGAAAAACACT+TGG | - | chr3.1:71794304-71794323 | MS.gene052898:CDS | 45.0% | |
| TTCCACCAGCATAACAACCT+TGG | + | chr3.1:71794193-71794212 | None:intergenic | 45.0% | |
| !! | ACCCCATTTTAGTCCTTCAC+CGG | + | chr3.1:71795408-71795427 | None:intergenic | 45.0% |
| !! | GGACAAGCACTTTTTGGTGA+CGG | - | chr3.1:71794338-71794357 | MS.gene052898:CDS | 45.0% |
| !! | GTTGAAGAAGTGCCAAAGCT+AGG | - | chr3.1:71794002-71794021 | MS.gene052898:intron | 45.0% |
| !! | TTGATTTGGGCTGCAATAGG+AGG | - | chr3.1:71793564-71793583 | MS.gene052898:intron | 45.0% |
| !!! | TTGTTTTGGGTAACACACCC+TGG | - | chr3.1:71795215-71795234 | MS.gene052898:intron | 45.0% |
| !! | TATATATATATATATATATG+GGG | - | chr3.1:71794604-71794623 | MS.gene052898:CDS | 5.0% |
| AGTACCAATGGCCAGTATGG+TGG | + | chr3.1:71793116-71793135 | None:intergenic | 50.0% | |
| ATGGTTTCCATGGTCAAGCC+AGG | + | chr3.1:71795449-71795468 | None:intergenic | 50.0% | |
| CACCAAGGTTGTTATGCTGG+TGG | - | chr3.1:71794188-71794207 | MS.gene052898:CDS | 50.0% | |
| CACCAGCATAACAACCTTGG+TGG | + | chr3.1:71794190-71794209 | None:intergenic | 50.0% | |
| GACTGGAGTTGCAGTACCAA+TGG | + | chr3.1:71793128-71793147 | None:intergenic | 50.0% | |
| GGGAAAACAACAACCGGTGA+AGG | - | chr3.1:71795392-71795411 | MS.gene052898:CDS | 50.0% | |
| GGTGCTTCATCTGTGATCGT+TGG | - | chr3.1:71794359-71794378 | MS.gene052898:CDS | 50.0% | |
| GTTGGCGCTATGCAAAGCAA+TGG | + | chr3.1:71795468-71795487 | None:intergenic | 50.0% | |
| TGCAGTACCAATGGCCAGTA+TGG | + | chr3.1:71793119-71793138 | None:intergenic | 50.0% | |
| ! | ATTTGGTCCTGGCTTGACCA+TGG | - | chr3.1:71795439-71795458 | MS.gene052898:CDS | 50.0% |
| ! | GGACGTTCAAGTGTTGTGTC+TGG | + | chr3.1:71794392-71794411 | None:intergenic | 50.0% |
| !! | TGGCCTTGAGTTGAGTCATG+TGG | + | chr3.1:71793207-71793226 | None:intergenic | 50.0% |
| !! | TTTTGGGTAACACACCCTGG+TGG | - | chr3.1:71795218-71795237 | MS.gene052898:intron | 50.0% |
| !!! | GCTGCTTTTTCGCCTAGCTT+TGG | + | chr3.1:71794017-71794036 | None:intergenic | 50.0% |
| ACTTCCGGAGTTGACATGCC+TGG | - | chr3.1:71794101-71794120 | MS.gene052898:intron | 55.0% | |
| AGAGAGTCCCAAAGAGCTCG+TGG | - | chr3.1:71793085-71793104 | MS.gene052898:CDS | 55.0% | |
| AGCACCAGGCATGTCAACTC+CGG | + | chr3.1:71794108-71794127 | None:intergenic | 55.0% | |
| GAAGGACACTTGCGTGAGGT+GGG | - | chr3.1:71795086-71795105 | MS.gene052898:intron | 55.0% | |
| GGACAACAAGCTAAGCCGCT+AGG | + | chr3.1:71794514-71794533 | None:intergenic | 55.0% | |
| TCTTGGCGTACGTTGAGGGA+TGG | + | chr3.1:71793975-71793994 | None:intergenic | 55.0% | |
| TGAAGGACACTTGCGTGAGG+TGG | - | chr3.1:71795085-71795104 | MS.gene052898:intron | 55.0% | |
| ! | GCTAAGCCGCTAGGCCTTTT+TGG | + | chr3.1:71794505-71794524 | None:intergenic | 55.0% |
| CCAATGGCCAGTATGGTGGC+TGG | + | chr3.1:71793112-71793131 | None:intergenic | 60.0% | |
| CCAGCCACCATACTGGCCAT+TGG | - | chr3.1:71793109-71793128 | MS.gene052898:CDS | 60.0% | |
| GGCTGGACCACGAGCTCTTT+GGG | + | chr3.1:71793095-71793114 | None:intergenic | 60.0% | |
| TCGTGGTCCAGCCACCATAC+TGG | - | chr3.1:71793102-71793121 | MS.gene052898:CDS | 60.0% | |
| TGGCTGGACCACGAGCTCTT+TGG | + | chr3.1:71793096-71793115 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 71793064 | 71795505 | 71793064 | ID=MS.gene052898 |
| chr3.1 | mRNA | 71793064 | 71795505 | 71793064 | ID=MS.gene052898.t1;Parent=MS.gene052898 |
| chr3.1 | exon | 71795328 | 71795505 | 71795328 | ID=MS.gene052898.t1.exon1;Parent=MS.gene052898.t1 |
| chr3.1 | CDS | 71795328 | 71795505 | 71795328 | ID=cds.MS.gene052898.t1;Parent=MS.gene052898.t1 |
| chr3.1 | exon | 71794108 | 71794683 | 71794108 | ID=MS.gene052898.t1.exon2;Parent=MS.gene052898.t1 |
| chr3.1 | CDS | 71794108 | 71794683 | 71794108 | ID=cds.MS.gene052898.t1;Parent=MS.gene052898.t1 |
| chr3.1 | exon | 71793064 | 71793491 | 71793064 | ID=MS.gene052898.t1.exon3;Parent=MS.gene052898.t1 |
| chr3.1 | CDS | 71793064 | 71793491 | 71793064 | ID=cds.MS.gene052898.t1;Parent=MS.gene052898.t1 |
| Gene Sequence |
| Protein sequence |
