Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71904.t1 | XP_013457632.1 | 94 | 151 | 6 | 1 | 1 | 151 | 1 | 148 | 3.00E-61 | 244.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71904.t1 | I3SGW1 | 94.0 | 151 | 6 | 1 | 1 | 151 | 1 | 148 | 2.1e-61 | 244.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049267 | MS.gene71904 | 0.816163 | 6.37E-52 | -1.69E-46 |
| MS.gene049611 | MS.gene71904 | 0.818 | 2.46E-52 | -1.69E-46 |
| MS.gene049633 | MS.gene71904 | -0.817022 | 4.09E-52 | -1.69E-46 |
| MS.gene049634 | MS.gene71904 | 0.847284 | 1.28E-59 | -1.69E-46 |
| MS.gene050381 | MS.gene71904 | 0.834341 | 3.17E-56 | -1.69E-46 |
| MS.gene050612 | MS.gene71904 | -0.815517 | 8.88E-52 | -1.69E-46 |
| MS.gene050675 | MS.gene71904 | -0.803981 | 2.69E-49 | -1.69E-46 |
| MS.gene05079 | MS.gene71904 | 0.826716 | 2.33E-54 | -1.69E-46 |
| MS.gene050809 | MS.gene71904 | 0.825904 | 3.63E-54 | -1.69E-46 |
| MS.gene05080 | MS.gene71904 | -0.826202 | 3.09E-54 | -1.69E-46 |
| MS.gene050868 | MS.gene71904 | -0.820912 | 5.34E-53 | -1.69E-46 |
| MS.gene050871 | MS.gene71904 | -0.819976 | 8.75E-53 | -1.69E-46 |
| MS.gene051127 | MS.gene71904 | 0.8028 | 4.72E-49 | -1.69E-46 |
| MS.gene051138 | MS.gene71904 | 0.83961 | 1.43E-57 | -1.69E-46 |
| MS.gene051268 | MS.gene71904 | -0.818949 | 1.50E-52 | -1.69E-46 |
| MS.gene051874 | MS.gene71904 | -0.800461 | 1.43E-48 | -1.69E-46 |
| MS.gene052805 | MS.gene71904 | 0.819815 | 9.53E-53 | -1.69E-46 |
| MS.gene052870 | MS.gene71904 | -0.805922 | 1.06E-49 | -1.69E-46 |
| MS.gene052872 | MS.gene71904 | -0.811305 | 7.48E-51 | -1.69E-46 |
| MS.gene052898 | MS.gene71904 | 0.800222 | 1.59E-48 | -1.69E-46 |
| MS.gene052966 | MS.gene71904 | -0.827315 | 1.67E-54 | -1.69E-46 |
| MS.gene053420 | MS.gene71904 | 0.828627 | 8.09E-55 | -1.69E-46 |
| MS.gene053561 | MS.gene71904 | 0.84787 | 8.80E-60 | -1.69E-46 |
| MS.gene053824 | MS.gene71904 | -0.800325 | 1.52E-48 | -1.69E-46 |
| MS.gene05494 | MS.gene71904 | -0.846568 | 2.00E-59 | -1.69E-46 |
| MS.gene055111 | MS.gene71904 | 0.800783 | 1.23E-48 | -1.69E-46 |
| MS.gene055154 | MS.gene71904 | 0.804053 | 2.60E-49 | -1.69E-46 |
| MS.gene055202 | MS.gene71904 | 0.810281 | 1.25E-50 | -1.69E-46 |
| MS.gene055206 | MS.gene71904 | -0.818542 | 1.86E-52 | -1.69E-46 |
| MS.gene055577 | MS.gene71904 | -0.81218 | 4.83E-51 | -1.69E-46 |
| MS.gene055751 | MS.gene71904 | -0.800833 | 1.20E-48 | -1.69E-46 |
| MS.gene05589 | MS.gene71904 | -0.807294 | 5.42E-50 | -1.69E-46 |
| MS.gene056903 | MS.gene71904 | -0.80068 | 1.29E-48 | -1.69E-46 |
| MS.gene058171 | MS.gene71904 | 0.812245 | 4.67E-51 | -1.69E-46 |
| MS.gene058173 | MS.gene71904 | 0.80475 | 1.86E-49 | -1.69E-46 |
| MS.gene058175 | MS.gene71904 | 0.814116 | 1.82E-51 | -1.69E-46 |
| MS.gene05837 | MS.gene71904 | -0.8037 | 3.08E-49 | -1.69E-46 |
| MS.gene058603 | MS.gene71904 | 0.800563 | 1.36E-48 | -1.69E-46 |
| MS.gene058773 | MS.gene71904 | -0.805792 | 1.13E-49 | -1.69E-46 |
| MS.gene058840 | MS.gene71904 | 0.820006 | 8.61E-53 | -1.69E-46 |
| MS.gene058978 | MS.gene71904 | 0.818165 | 2.26E-52 | -1.69E-46 |
| MS.gene059129 | MS.gene71904 | -0.81881 | 1.61E-52 | -1.69E-46 |
| MS.gene060762 | MS.gene71904 | -0.805997 | 1.02E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71904.t1 | MTR_4g101780 | 96.026 | 151 | 3 | 1 | 1 | 151 | 1 | 148 | 6.39e-101 | 286 |
| MS.gene71904.t1 | MTR_4g101780 | 97.521 | 121 | 0 | 1 | 1 | 121 | 1 | 118 | 3.16e-80 | 233 |
| MS.gene71904.t1 | MTR_5g011980 | 44.000 | 125 | 64 | 5 | 31 | 151 | 34 | 156 | 6.89e-27 | 99.0 |
| MS.gene71904.t1 | MTR_5g011960 | 38.776 | 147 | 76 | 6 | 9 | 145 | 7 | 149 | 1.45e-25 | 95.5 |
| MS.gene71904.t1 | MTR_5g011950 | 38.028 | 142 | 81 | 5 | 12 | 150 | 6 | 143 | 1.27e-24 | 92.8 |
| MS.gene71904.t1 | MTR_5g011980 | 40.909 | 88 | 48 | 3 | 31 | 115 | 29 | 115 | 3.45e-16 | 70.9 |
| MS.gene71904.t1 | MTR_4g011070 | 28.378 | 148 | 82 | 6 | 6 | 150 | 10 | 136 | 6.49e-12 | 59.7 |
| MS.gene71904.t1 | MTR_6g069860 | 25.962 | 104 | 76 | 1 | 33 | 135 | 52 | 155 | 5.21e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71904.t1 | AT1G62790 | 43.046 | 151 | 75 | 5 | 6 | 150 | 5 | 150 | 1.37e-33 | 115 |
| MS.gene71904.t1 | AT1G62790 | 43.333 | 150 | 75 | 5 | 6 | 150 | 5 | 149 | 1.62e-33 | 115 |
| MS.gene71904.t1 | AT1G70250 | 42.574 | 101 | 53 | 2 | 11 | 110 | 4 | 100 | 8.45e-22 | 90.9 |
| MS.gene71904.t1 | AT1G73550 | 32.667 | 150 | 85 | 6 | 5 | 144 | 5 | 148 | 2.71e-17 | 73.9 |
| MS.gene71904.t1 | AT1G73560 | 33.846 | 130 | 79 | 3 | 23 | 150 | 22 | 146 | 1.04e-15 | 69.7 |
| MS.gene71904.t1 | AT4G12360 | 33.607 | 122 | 76 | 4 | 33 | 150 | 41 | 161 | 1.68e-13 | 64.3 |
| MS.gene71904.t1 | AT1G18280 | 32.407 | 108 | 61 | 2 | 11 | 106 | 7 | 114 | 3.02e-13 | 64.3 |
| MS.gene71904.t1 | AT1G73550 | 32.283 | 127 | 75 | 5 | 5 | 126 | 5 | 125 | 5.20e-13 | 62.4 |
Find 32 sgRNAs with CRISPR-Local
Find 129 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTAATCAGCACATGGAATT+AGG | 0.241616 | 8.3:+19542500 | None:intergenic |
| CTGAGTAGTATTGATGTTAA+AGG | 0.279278 | 8.3:+19542369 | None:intergenic |
| TACTTCCGGCGGGTCCCCAC+CGG | 0.360570 | 8.3:-19541594 | MS.gene71904:CDS |
| TGTAATCTCTTCTATGCTCC+TGG | 0.366171 | 8.3:-19542403 | MS.gene71904:CDS |
| TAGGTGGTTTGGTTGAATTA+AGG | 0.397792 | 8.3:+19542479 | None:intergenic |
| GCTACAACAGGTGGTGATAA+AGG | 0.397964 | 8.3:-19540192 | MS.gene71904:CDS |
| ACAGCAAGAACTAGGTGGTT+TGG | 0.446180 | 8.3:+19542468 | None:intergenic |
| TCAGCTCCAGCTCCTACTTC+CGG | 0.447064 | 8.3:-19541608 | MS.gene71904:CDS |
| TGTGTCATTGATGGTAGGTA+TGG | 0.480773 | 8.3:-19542584 | MS.gene71904:CDS |
| ATTGGATCACAGCAAGAACT+AGG | 0.493116 | 8.3:+19542460 | None:intergenic |
| ATTCACCATGCAGCTACAAC+AGG | 0.493430 | 8.3:-19540204 | MS.gene71904:intron |
| GACCCGCCGGAAGTAGGAGC+TGG | 0.495816 | 8.3:+19541602 | None:intergenic |
| GCAGGCAGAGTCTCATTCAC+TGG | 0.496932 | 8.3:-19540165 | MS.gene71904:CDS |
| ATTAGGTTTGTAGCACATGA+AGG | 0.504332 | 8.3:+19542517 | None:intergenic |
| TTAAAGGTTGCAAGCAAACC+AGG | 0.530324 | 8.3:+19542385 | None:intergenic |
| GGTGGTGATAAAGGAGCTGC+AGG | 0.532328 | 8.3:-19540183 | MS.gene71904:CDS |
| CTCCAGCTCCTACTTCCGGC+GGG | 0.538414 | 8.3:-19541604 | MS.gene71904:CDS |
| GGTGGGGACCCGCCGGAAGT+AGG | 0.541867 | 8.3:+19541596 | None:intergenic |
| ACTTCCGGCGGGTCCCCACC+GGG | 0.554602 | 8.3:-19541593 | MS.gene71904:intron |
| TTACATACTGTGTTTGCAAG+TGG | 0.570284 | 8.3:+19542303 | None:intergenic |
| CTTTAACATCAATACTACTC+AGG | 0.573773 | 8.3:-19542368 | MS.gene71904:CDS |
| GCTCCAGCTCCTACTTCCGG+CGG | 0.581336 | 8.3:-19541605 | MS.gene71904:CDS |
| TTAGGTTTGTAGCACATGAA+GGG | 0.589848 | 8.3:+19542518 | None:intergenic |
| CTTACCCGGTGGGGACCCGC+CGG | 0.593515 | 8.3:+19541589 | None:intergenic |
| GAAGAAGATTCTTACCCGGT+GGG | 0.613228 | 8.3:+19541579 | None:intergenic |
| CACCATGCAGCTACAACAGG+TGG | 0.627084 | 8.3:-19540201 | MS.gene71904:intron |
| AAGAAGATTCTTACCCGGTG+GGG | 0.685476 | 8.3:+19541580 | None:intergenic |
| CTTGCGTTGAGTCGTAACTG+TGG | 0.693927 | 8.3:-19542343 | MS.gene71904:CDS |
| GGATCACAGCAAGAACTAGG+TGG | 0.697170 | 8.3:+19542463 | None:intergenic |
| GAATTAAGGTAATCAGCACA+TGG | 0.709687 | 8.3:+19542493 | None:intergenic |
| TTTGCAAGTGGTAAGATCAG+TGG | 0.711684 | 8.3:+19542315 | None:intergenic |
| GTTGATGATCAACACTACAG+AGG | 0.726445 | 8.3:-19542557 | MS.gene71904:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAAAGTAGAA+TGG | + | chr8.3:19542381-19542400 | None:intergenic | 10.0% |
| !! | TTGAAATTAAAAAAAGATAA+AGG | + | chr8.3:19541878-19541897 | None:intergenic | 10.0% |
| !!! | AAAGCATTTTTTTTTTTTTA+GGG | - | chr8.3:19541023-19541042 | MS.gene71904:intron | 10.0% |
| !!! | ATCTTTTTTTAATTTCAATT+TGG | - | chr8.3:19541880-19541899 | MS.gene71904:intron | 10.0% |
| !!! | GTTTATGAAATTTAAAATTT+GGG | + | chr8.3:19542032-19542051 | None:intergenic | 10.0% |
| !!! | TAAAGTTTATAGTTTTTTTA+AGG | + | chr8.3:19541945-19541964 | None:intergenic | 10.0% |
| !!! | TGTTTATGAAATTTAAAATT+TGG | + | chr8.3:19542033-19542052 | None:intergenic | 10.0% |
| !! | AAAAAACTATAAACTTTAGA+CGG | - | chr8.3:19541947-19541966 | MS.gene71904:intron | 15.0% |
| !! | AATAGAAGAAGATTAAAAAA+AGG | - | chr8.3:19541803-19541822 | MS.gene71904:intron | 15.0% |
| !! | CATAAACAATAAAATTTCAA+TGG | - | chr8.3:19542045-19542064 | MS.gene71904:intron | 15.0% |
| !!! | AAGCATTTTTTTTTTTTTAG+GGG | - | chr8.3:19541024-19541043 | MS.gene71904:intron | 15.0% |
| !!! | GAAAGCATTTTTTTTTTTTT+AGG | - | chr8.3:19541022-19541041 | MS.gene71904:intron | 15.0% |
| !!! | GCATGTATAATTTTTTTTTT+TGG | + | chr8.3:19542350-19542369 | None:intergenic | 15.0% |
| !!! | TGAATATAACTTTTTTTTCT+AGG | + | chr8.3:19540671-19540690 | None:intergenic | 15.0% |
| !!! | TGAATCTAAAAATGAAATTT+TGG | + | chr8.3:19541488-19541507 | None:intergenic | 15.0% |
| !!! | TGATATTTTGACAATAAATT+TGG | - | chr8.3:19540709-19540728 | MS.gene71904:intron | 15.0% |
| !!! | TTTTAATCTTCTTCTATTTT+TGG | + | chr8.3:19541801-19541820 | None:intergenic | 15.0% |
| !! | AAAAAAAAGTAGAATGGAAT+TGG | + | chr8.3:19542375-19542394 | None:intergenic | 20.0% |
| !! | AAAAAAAGTAGAATGGAATT+GGG | + | chr8.3:19542374-19542393 | None:intergenic | 20.0% |
| !! | AATGCAGTTTATTAATTCTA+TGG | + | chr8.3:19540879-19540898 | None:intergenic | 20.0% |
| !! | ATATTTGTCACATCAATTAA+AGG | + | chr8.3:19540478-19540497 | None:intergenic | 20.0% |
| !! | CATAAACAATTATTTCATAC+CGG | - | chr8.3:19542115-19542134 | MS.gene71904:intron | 20.0% |
| !! | CTGAAATTATTCAAACAAAA+AGG | + | chr8.3:19541099-19541118 | None:intergenic | 20.0% |
| !! | TAATCTAACAATATTGACAT+TGG | + | chr8.3:19542248-19542267 | None:intergenic | 20.0% |
| !! | TTATTCAAACAAAAAGGTAA+AGG | + | chr8.3:19541093-19541112 | None:intergenic | 20.0% |
| !! | TTGATTCAATTCTTAATTTC+TGG | + | chr8.3:19540607-19540626 | None:intergenic | 20.0% |
| !! | TTGCAATAATAATTGACAAT+TGG | + | chr8.3:19542486-19542505 | None:intergenic | 20.0% |
| !! | TTTGTTTGAATAATTTCAGA+TGG | - | chr8.3:19541100-19541119 | MS.gene71904:intron | 20.0% |
| !!! | AAGAGTATTCTATTTTATCA+AGG | + | chr8.3:19541767-19541786 | None:intergenic | 20.0% |
| !!! | ATCATTATCATTGTTTTTGA+AGG | - | chr8.3:19542142-19542161 | MS.gene71904:intron | 20.0% |
| !!! | ATTCTCTTTTATACTCTTAT+TGG | - | chr8.3:19542590-19542609 | MS.gene71904:CDS | 20.0% |
| !!! | ATTTTTTTTTTTTTAGGGGA+AGG | - | chr8.3:19541028-19541047 | MS.gene71904:intron | 20.0% |
| !!! | CTCACATAATTGATATATTT+TGG | + | chr8.3:19542282-19542301 | None:intergenic | 20.0% |
| ! | AAAAAACATCAAATGTTTGC+TGG | - | chr8.3:19540987-19541006 | MS.gene71904:intron | 25.0% |
| ! | AATAAGAGATCAAATTTGAG+AGG | - | chr8.3:19541644-19541663 | MS.gene71904:intron | 25.0% |
| ! | ATAAGAGATCAAATTTGAGA+GGG | - | chr8.3:19541645-19541664 | MS.gene71904:intron | 25.0% |
| ! | CTAATTTCAATTCATTGTGT+TGG | + | chr8.3:19541601-19541620 | None:intergenic | 25.0% |
| ! | GATTATACATGTATAGTTCT+TGG | + | chr8.3:19542411-19542430 | None:intergenic | 25.0% |
| ! | GTTACCTGAAATTAAGTTAA+GGG | + | chr8.3:19541847-19541866 | None:intergenic | 25.0% |
| ! | TAATCCCTTAACTTAATTTC+AGG | - | chr8.3:19541840-19541859 | MS.gene71904:intron | 25.0% |
| ! | TATCAAGGTAAAAACATTAC+TGG | + | chr8.3:19541752-19541771 | None:intergenic | 25.0% |
| ! | TATTGTTAGATTAGATAGCA+TGG | - | chr8.3:19542255-19542274 | MS.gene71904:intron | 25.0% |
| ! | TCAATGGAGAACAATTATAT+TGG | - | chr8.3:19542061-19542080 | MS.gene71904:intron | 25.0% |
| ! | TGTTACCTGAAATTAAGTTA+AGG | + | chr8.3:19541848-19541867 | None:intergenic | 25.0% |
| !! | AACAATGATAATGATAACAC+CGG | + | chr8.3:19542137-19542156 | None:intergenic | 25.0% |
| !! | GTGACAAATATTTGACTTAT+TGG | - | chr8.3:19540487-19540506 | MS.gene71904:intron | 25.0% |
| !! | TTGTCTTTTCCTAATTCTAA+GGG | + | chr8.3:19542000-19542019 | None:intergenic | 25.0% |
| !! | TTTGTCTTTTCCTAATTCTA+AGG | + | chr8.3:19542001-19542020 | None:intergenic | 25.0% |
| !!! | ACACTTTTTTTCCATCAATT+TGG | - | chr8.3:19540911-19540930 | MS.gene71904:intron | 25.0% |
| !!! | ATTTTGGTTATAATAGTGAC+CGG | + | chr8.3:19541472-19541491 | None:intergenic | 25.0% |
| !!! | GTTTCAACTGTTTTTTTGAT+TGG | + | chr8.3:19540293-19540312 | None:intergenic | 25.0% |
| !!! | TAGTCTATCAATTAGTCTTT+CGG | - | chr8.3:19541408-19541427 | MS.gene71904:intron | 25.0% |
| !!! | TGTGTCGGATTTTTTTTTAT+TGG | - | chr8.3:19540527-19540546 | MS.gene71904:intron | 25.0% |
| AAACTATAAACTTTAGACGG+TGG | - | chr8.3:19541950-19541969 | MS.gene71904:intron | 30.0% | |
| ACTTCTTTGTATGATTGTGT+CGG | - | chr8.3:19540512-19540531 | MS.gene71904:intron | 30.0% | |
| AGACCACAATTATTTATGAG+TGG | - | chr8.3:19541538-19541557 | MS.gene71904:intron | 30.0% | |
| ATGATTAGATGTACTTCACA+AGG | + | chr8.3:19542439-19542458 | None:intergenic | 30.0% | |
| CACAATTATTTATGAGTGGA+TGG | - | chr8.3:19541542-19541561 | MS.gene71904:intron | 30.0% | |
| CATCCACTCATAAATAATTG+TGG | + | chr8.3:19541544-19541563 | None:intergenic | 30.0% | |
| CTTTAACATCAATACTACTC+AGG | - | chr8.3:19540364-19540383 | MS.gene71904:intron | 30.0% | |
| TAGTCCCTTAACTTAAATTC+AGG | + | chr8.3:19541908-19541927 | None:intergenic | 30.0% | |
| TTCTAGATCTAGTGAGAAAA+GGG | - | chr8.3:19540578-19540597 | MS.gene71904:intron | 30.0% | |
| TTTCTAGATCTAGTGAGAAA+AGG | - | chr8.3:19540577-19540596 | MS.gene71904:intron | 30.0% | |
| ! | AAGAAGTGAAAATCAAGTTG+AGG | + | chr8.3:19541186-19541205 | None:intergenic | 30.0% |
| ! | CTTAATTTCAGGTAACAGTT+TGG | - | chr8.3:19541851-19541870 | MS.gene71904:intron | 30.0% |
| ! | GGTACCTGAATTTAAGTTAA+GGG | - | chr8.3:19541901-19541920 | MS.gene71904:intron | 30.0% |
| ! | TGGTACCTGAATTTAAGTTA+AGG | - | chr8.3:19541900-19541919 | MS.gene71904:intron | 30.0% |
| ! | TGTCTTTTCCTAATTCTAAG+GGG | + | chr8.3:19541999-19542018 | None:intergenic | 30.0% |
| !! | CTGAGTAGTATTGATGTTAA+AGG | + | chr8.3:19540366-19540385 | None:intergenic | 30.0% |
| !!! | GATGTTTTTTATGAGACTGA+TGG | + | chr8.3:19540977-19540996 | None:intergenic | 30.0% |
| ATCCAAATACAACGAAGCAA+TGG | + | chr8.3:19540644-19540663 | None:intergenic | 35.0% | |
| ATGTGAAGAAGATTCTTACC+CGG | + | chr8.3:19541160-19541179 | None:intergenic | 35.0% | |
| ATTAGGTTTGTAGCACATGA+AGG | + | chr8.3:19540218-19540237 | None:intergenic | 35.0% | |
| GAATTAAGGTAATCAGCACA+TGG | + | chr8.3:19540242-19540261 | None:intergenic | 35.0% | |
| GATATTTGCCCCTTAGAATT+AGG | - | chr8.3:19541988-19542007 | MS.gene71904:intron | 35.0% | |
| GCAAATATCTTCTTGTGGAT+TGG | + | chr8.3:19541977-19541996 | None:intergenic | 35.0% | |
| GGTTAATCATAGTGTAGCAA+AGG | + | chr8.3:19540858-19540877 | None:intergenic | 35.0% | |
| TACCATTGCTTCGTTGTATT+TGG | - | chr8.3:19540639-19540658 | MS.gene71904:intron | 35.0% | |
| TCTAGATCTAGTGAGAAAAG+GGG | - | chr8.3:19540579-19540598 | MS.gene71904:intron | 35.0% | |
| TCTCACTAGATCTAGAAAAC+TGG | + | chr8.3:19540575-19540594 | None:intergenic | 35.0% | |
| TTACATACTGTGTTTGCAAG+TGG | + | chr8.3:19540432-19540451 | None:intergenic | 35.0% | |
| TTAGGTTTGTAGCACATGAA+GGG | + | chr8.3:19540217-19540236 | None:intergenic | 35.0% | |
| ! | AATTTGGTCCATCTGGTTTA+AGG | - | chr8.3:19540927-19540946 | MS.gene71904:intron | 35.0% |
| ! | TTGTGTTGGTCTCAAAATTG+TGG | + | chr8.3:19541587-19541606 | None:intergenic | 35.0% |
| !! | AAGTGAAAATCAAGTTGAGG+AGG | + | chr8.3:19541183-19541202 | None:intergenic | 35.0% |
| !! | ACTTTTGTGTCATTGATGGT+AGG | - | chr8.3:19540143-19540162 | MS.gene71904:CDS | 35.0% |
| !! | CATCACTTTTGTGTCATTGA+TGG | - | chr8.3:19540139-19540158 | MS.gene71904:CDS | 35.0% |
| !! | TAGGTGGTTTGGTTGAATTA+AGG | + | chr8.3:19540256-19540275 | None:intergenic | 35.0% |
| AACCAGATGGACCAAATTGA+TGG | + | chr8.3:19540925-19540944 | None:intergenic | 40.0% | |
| AAGGGGCAAATATCTTCTTG+TGG | + | chr8.3:19541982-19542001 | None:intergenic | 40.0% | |
| ATGATAAGAGATACTCCCTC+CGG | - | chr8.3:19541450-19541469 | MS.gene71904:intron | 40.0% | |
| ATGCCTAATTGCTAAGAGTG+TGG | - | chr8.3:19540765-19540784 | MS.gene71904:intron | 40.0% | |
| ATTGGATCACAGCAAGAACT+AGG | + | chr8.3:19540275-19540294 | None:intergenic | 40.0% | |
| GGTAATCAGCACATGGAATT+AGG | + | chr8.3:19540235-19540254 | None:intergenic | 40.0% | |
| TCTATTGTCAGCTTCAACTG+CGG | + | chr8.3:19541241-19541260 | None:intergenic | 40.0% | |
| TGAGAGGGAATAGTAGTTGA+GGG | - | chr8.3:19541660-19541679 | MS.gene71904:intron | 40.0% | |
| TGGTGAATTGCAAGTTTGTG+AGG | + | chr8.3:19542516-19542535 | None:intergenic | 40.0% | |
| TGGTTATAATAGTGACCGGA+GGG | + | chr8.3:19541468-19541487 | None:intergenic | 40.0% | |
| TGTAATCTCTTCTATGCTCC+TGG | - | chr8.3:19540329-19540348 | MS.gene71904:intron | 40.0% | |
| TTAAAGGTTGCAAGCAAACC+AGG | + | chr8.3:19540350-19540369 | None:intergenic | 40.0% | |
| TTCCATCAATTTGGTCCATC+TGG | - | chr8.3:19540920-19540939 | MS.gene71904:intron | 40.0% | |
| TTGAGAGGGAATAGTAGTTG+AGG | - | chr8.3:19541659-19541678 | MS.gene71904:intron | 40.0% | |
| TTGGTTATAATAGTGACCGG+AGG | + | chr8.3:19541469-19541488 | None:intergenic | 40.0% | |
| TTTGCAAGTGGTAAGATCAG+TGG | + | chr8.3:19540420-19540439 | None:intergenic | 40.0% | |
| ! | TGTGTCATTGATGGTAGGTA+TGG | - | chr8.3:19540148-19540167 | MS.gene71904:CDS | 40.0% |
| !! | CATCTTAGCCTTAAACCAGA+TGG | + | chr8.3:19540938-19540957 | None:intergenic | 40.0% |
| !! | GTTGATGATCAACACTACAG+AGG | - | chr8.3:19540175-19540194 | MS.gene71904:CDS | 40.0% |
| AAGAAGATTCTTACCCGGTG+GGG | + | chr8.3:19541155-19541174 | None:intergenic | 45.0% | |
| ACAGCAAGAACTAGGTGGTT+TGG | + | chr8.3:19540267-19540286 | None:intergenic | 45.0% | |
| ATTCACCATGCAGCTACAAC+AGG | - | chr8.3:19542528-19542547 | MS.gene71904:CDS | 45.0% | |
| CCACCACACTCTTAGCAATT+AGG | + | chr8.3:19540771-19540790 | None:intergenic | 45.0% | |
| GAAGAAGATTCTTACCCGGT+GGG | + | chr8.3:19541156-19541175 | None:intergenic | 45.0% | |
| GCTACAACAGGTGGTGATAA+AGG | - | chr8.3:19542540-19542559 | MS.gene71904:CDS | 45.0% | |
| TGAAGAAGATTCTTACCCGG+TGG | + | chr8.3:19541157-19541176 | None:intergenic | 45.0% | |
| ! | CCTAATTGCTAAGAGTGTGG+TGG | - | chr8.3:19540768-19540787 | MS.gene71904:intron | 45.0% |
| CTTGCGTTGAGTCGTAACTG+TGG | - | chr8.3:19540389-19540408 | MS.gene71904:intron | 50.0% | |
| GGATCACAGCAAGAACTAGG+TGG | + | chr8.3:19540272-19540291 | None:intergenic | 50.0% | |
| CACCACCTGTTGTAGCTGCA+TGG | + | chr8.3:19542536-19542555 | None:intergenic | 55.0% | |
| CACCATGCAGCTACAACAGG+TGG | - | chr8.3:19542531-19542550 | MS.gene71904:CDS | 55.0% | |
| GCAGGCAGAGTCTCATTCAC+TGG | - | chr8.3:19542567-19542586 | MS.gene71904:CDS | 55.0% | |
| GGTGGTGATAAAGGAGCTGC+AGG | - | chr8.3:19542549-19542568 | MS.gene71904:CDS | 55.0% | |
| TCAGCTCCAGCTCCTACTTC+CGG | - | chr8.3:19541124-19541143 | MS.gene71904:intron | 55.0% | |
| CTCCAGCTCCTACTTCCGGC+GGG | - | chr8.3:19541128-19541147 | MS.gene71904:intron | 65.0% | |
| GCTCCAGCTCCTACTTCCGG+CGG | - | chr8.3:19541127-19541146 | MS.gene71904:intron | 65.0% | |
| GACCCGCCGGAAGTAGGAGC+TGG | + | chr8.3:19541133-19541152 | None:intergenic | 70.0% | |
| TACTTCCGGCGGGTCCCCAC+CGG | - | chr8.3:19541138-19541157 | MS.gene71904:intron | 70.0% | |
| ACTTCCGGCGGGTCCCCACC+GGG | - | chr8.3:19541139-19541158 | MS.gene71904:intron | 75.0% | |
| CTTACCCGGTGGGGACCCGC+CGG | + | chr8.3:19541146-19541165 | None:intergenic | 75.0% | |
| GGTGGGGACCCGCCGGAAGT+AGG | + | chr8.3:19541139-19541158 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 19540122 | 19542632 | 19540122 | ID=MS.gene71904 |
| chr8.3 | mRNA | 19540122 | 19542632 | 19540122 | ID=MS.gene71904.t1;Parent=MS.gene71904 |
| chr8.3 | exon | 19542311 | 19542632 | 19542311 | ID=MS.gene71904.t1.exon1;Parent=MS.gene71904.t1 |
| chr8.3 | CDS | 19542311 | 19542632 | 19542311 | ID=cds.MS.gene71904.t1;Parent=MS.gene71904.t1 |
| chr8.3 | exon | 19541594 | 19541635 | 19541594 | ID=MS.gene71904.t1.exon2;Parent=MS.gene71904.t1 |
| chr8.3 | CDS | 19541594 | 19541635 | 19541594 | ID=cds.MS.gene71904.t1;Parent=MS.gene71904.t1 |
| chr8.3 | exon | 19540122 | 19540213 | 19540122 | ID=MS.gene71904.t1.exon3;Parent=MS.gene71904.t1 |
| chr8.3 | CDS | 19540122 | 19540213 | 19540122 | ID=cds.MS.gene71904.t1;Parent=MS.gene71904.t1 |
| Gene Sequence |
| Protein sequence |
