Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06074.t1 | XP_013447202.1 | 99 | 105 | 1 | 0 | 1 | 105 | 175 | 279 | 1.20E-56 | 229.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06074.t1 | A0A072TUM6 | 99.0 | 105 | 1 | 0 | 1 | 105 | 175 | 279 | 8.8e-57 | 229.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049147 | MS.gene06074 | 0.822182 | 2.72E-53 | -1.69E-46 |
| MS.gene049217 | MS.gene06074 | -0.815046 | 1.13E-51 | -1.69E-46 |
| MS.gene049611 | MS.gene06074 | 0.813429 | 2.57E-51 | -1.69E-46 |
| MS.gene050353 | MS.gene06074 | 0.844529 | 7.14E-59 | -1.69E-46 |
| MS.gene050354 | MS.gene06074 | 0.813502 | 2.48E-51 | -1.69E-46 |
| MS.gene050380 | MS.gene06074 | 0.815367 | 9.59E-52 | -1.69E-46 |
| MS.gene050381 | MS.gene06074 | 0.824113 | 9.62E-54 | -1.69E-46 |
| MS.gene051113 | MS.gene06074 | 0.810725 | 9.99E-51 | -1.69E-46 |
| MS.gene05141 | MS.gene06074 | 0.815235 | 1.03E-51 | -1.69E-46 |
| MS.gene052379 | MS.gene06074 | -0.809067 | 2.27E-50 | -1.69E-46 |
| MS.gene052898 | MS.gene06074 | 0.801192 | 1.01E-48 | -1.69E-46 |
| MS.gene053420 | MS.gene06074 | 0.80503 | 1.63E-49 | -1.69E-46 |
| MS.gene053488 | MS.gene06074 | 0.809747 | 1.62E-50 | -1.69E-46 |
| MS.gene053561 | MS.gene06074 | 0.848901 | 4.56E-60 | -1.69E-46 |
| MS.gene054708 | MS.gene06074 | 0.811054 | 8.48E-51 | -1.69E-46 |
| MS.gene055154 | MS.gene06074 | 0.823141 | 1.63E-53 | -1.69E-46 |
| MS.gene056942 | MS.gene06074 | -0.810839 | 9.44E-51 | -1.69E-46 |
| MS.gene058093 | MS.gene06074 | 0.812459 | 4.19E-51 | -1.69E-46 |
| MS.gene058840 | MS.gene06074 | 0.881954 | 1.56E-70 | -1.69E-46 |
| MS.gene059223 | MS.gene06074 | 0.805354 | 1.39E-49 | -1.69E-46 |
| MS.gene060205 | MS.gene06074 | 0.808808 | 2.58E-50 | -1.69E-46 |
| MS.gene06074 | MS.gene061959 | -0.815311 | 9.87E-52 | -1.69E-46 |
| MS.gene06074 | MS.gene063073 | 0.817758 | 2.79E-52 | -1.69E-46 |
| MS.gene06074 | MS.gene06332 | -0.810902 | 9.15E-51 | -1.69E-46 |
| MS.gene06074 | MS.gene065240 | 0.82043 | 6.89E-53 | -1.69E-46 |
| MS.gene06074 | MS.gene065537 | -0.803921 | 2.77E-49 | -1.69E-46 |
| MS.gene06074 | MS.gene066634 | -0.807112 | 5.93E-50 | -1.69E-46 |
| MS.gene06074 | MS.gene068043 | 0.861379 | 1.07E-63 | -1.69E-46 |
| MS.gene06074 | MS.gene068296 | 0.832565 | 8.79E-56 | -1.69E-46 |
| MS.gene06074 | MS.gene068297 | 0.847146 | 1.39E-59 | -1.69E-46 |
| MS.gene06074 | MS.gene068917 | 0.804571 | 2.03E-49 | -1.69E-46 |
| MS.gene06074 | MS.gene069590 | 0.96381 | 1.53E-122 | -1.69E-46 |
| MS.gene06074 | MS.gene071757 | -0.806529 | 7.87E-50 | -1.69E-46 |
| MS.gene06074 | MS.gene071931 | -0.800475 | 1.42E-48 | -1.69E-46 |
| MS.gene06074 | MS.gene072176 | -0.820587 | 6.34E-53 | -1.69E-46 |
| MS.gene06074 | MS.gene072806 | 0.821069 | 4.91E-53 | -1.69E-46 |
| MS.gene06074 | MS.gene072979 | 0.820856 | 5.50E-53 | -1.69E-46 |
| MS.gene06074 | MS.gene07321 | 0.844723 | 6.33E-59 | -1.69E-46 |
| MS.gene06074 | MS.gene073963 | -0.802153 | 6.42E-49 | -1.69E-46 |
| MS.gene06074 | MS.gene07427 | -0.803974 | 2.70E-49 | -1.69E-46 |
| MS.gene06074 | MS.gene07428 | -0.803544 | 3.31E-49 | -1.69E-46 |
| MS.gene06074 | MS.gene07448 | 0.8154 | 9.43E-52 | -1.69E-46 |
| MS.gene06074 | MS.gene08520 | -0.801384 | 9.23E-49 | -1.69E-46 |
| MS.gene06074 | MS.gene21253 | -0.820486 | 6.69E-53 | -1.69E-46 |
| MS.gene06074 | MS.gene21768 | 0.800779 | 1.23E-48 | -1.69E-46 |
| MS.gene06074 | MS.gene21772 | 0.805869 | 1.08E-49 | -1.69E-46 |
| MS.gene06074 | MS.gene21851 | 0.806736 | 7.12E-50 | -1.69E-46 |
| MS.gene06074 | MS.gene21856 | 0.828504 | 8.67E-55 | -1.69E-46 |
| MS.gene06074 | MS.gene23332 | -0.809863 | 1.53E-50 | -1.69E-46 |
| MS.gene06074 | MS.gene23417 | -0.807302 | 5.40E-50 | -1.69E-46 |
| MS.gene06074 | MS.gene24359 | 0.832428 | 9.51E-56 | -1.69E-46 |
| MS.gene06074 | MS.gene24974 | 0.836752 | 7.79E-57 | -1.69E-46 |
| MS.gene06074 | MS.gene25114 | 0.82991 | 3.95E-55 | -1.69E-46 |
| MS.gene06074 | MS.gene26403 | 0.819131 | 1.36E-52 | -1.69E-46 |
| MS.gene06074 | MS.gene26517 | 0.849298 | 3.54E-60 | -1.69E-46 |
| MS.gene06074 | MS.gene26860 | 0.807956 | 3.92E-50 | -1.69E-46 |
| MS.gene06074 | MS.gene27061 | -0.803293 | 3.74E-49 | -1.69E-46 |
| MS.gene06074 | MS.gene27711 | 0.837386 | 5.36E-57 | -1.69E-46 |
| MS.gene06074 | MS.gene27827 | 0.881893 | 1.64E-70 | -1.69E-46 |
| MS.gene06074 | MS.gene29268 | 0.801811 | 7.55E-49 | -1.69E-46 |
| MS.gene06074 | MS.gene29965 | 0.804231 | 2.39E-49 | -1.69E-46 |
| MS.gene06074 | MS.gene30407 | 0.826683 | 2.37E-54 | -1.69E-46 |
| MS.gene06074 | MS.gene33504 | -0.81455 | 1.46E-51 | -1.69E-46 |
| MS.gene06074 | MS.gene35546 | 0.845463 | 4.00E-59 | -1.69E-46 |
| MS.gene06074 | MS.gene35780 | 0.820287 | 7.43E-53 | -1.69E-46 |
| MS.gene06074 | MS.gene35788 | -0.804579 | 2.02E-49 | -1.69E-46 |
| MS.gene06074 | MS.gene36594 | -0.821678 | 3.55E-53 | -1.69E-46 |
| MS.gene06074 | MS.gene36703 | -0.827784 | 1.29E-54 | -1.69E-46 |
| MS.gene06074 | MS.gene36927 | 0.825602 | 4.29E-54 | -1.69E-46 |
| MS.gene06074 | MS.gene37159 | -0.805181 | 1.51E-49 | -1.69E-46 |
| MS.gene06074 | MS.gene37192 | 0.821565 | 3.77E-53 | -1.69E-46 |
| MS.gene06074 | MS.gene37609 | 0.82133 | 4.28E-53 | -1.69E-46 |
| MS.gene06074 | MS.gene38097 | 0.823556 | 1.30E-53 | -1.69E-46 |
| MS.gene06074 | MS.gene38172 | 0.813794 | 2.14E-51 | -1.69E-46 |
| MS.gene06074 | MS.gene38359 | 0.813156 | 2.95E-51 | -1.69E-46 |
| MS.gene06074 | MS.gene38706 | 0.807288 | 5.44E-50 | -1.69E-46 |
| MS.gene06074 | MS.gene39533 | 0.859571 | 3.77E-63 | -1.69E-46 |
| MS.gene06074 | MS.gene39635 | 0.82898 | 6.65E-55 | -1.69E-46 |
| MS.gene06074 | MS.gene39782 | 0.831354 | 1.75E-55 | -1.69E-46 |
| MS.gene06074 | MS.gene40874 | 0.822829 | 1.92E-53 | -1.69E-46 |
| MS.gene06074 | MS.gene40875 | 0.836466 | 9.21E-57 | -1.69E-46 |
| MS.gene06074 | MS.gene40958 | -0.813913 | 2.01E-51 | -1.69E-46 |
| MS.gene06074 | MS.gene43626 | -0.801189 | 1.01E-48 | -1.69E-46 |
| MS.gene06074 | MS.gene44547 | 0.832116 | 1.14E-55 | -1.69E-46 |
| MS.gene06074 | MS.gene46024 | 0.83254 | 8.92E-56 | -1.69E-46 |
| MS.gene06074 | MS.gene46025 | 0.841152 | 5.65E-58 | -1.69E-46 |
| MS.gene06074 | MS.gene46060 | 0.80899 | 2.36E-50 | -1.69E-46 |
| MS.gene06074 | MS.gene46433 | 0.807709 | 4.43E-50 | -1.69E-46 |
| MS.gene06074 | MS.gene47031 | 0.834519 | 2.86E-56 | -1.69E-46 |
| MS.gene06074 | MS.gene47576 | 0.810375 | 1.19E-50 | -1.69E-46 |
| MS.gene06074 | MS.gene47578 | 0.803251 | 3.81E-49 | -1.69E-46 |
| MS.gene06074 | MS.gene47828 | -0.816048 | 6.76E-52 | -1.69E-46 |
| MS.gene06074 | MS.gene49867 | -0.814244 | 1.70E-51 | -1.69E-46 |
| MS.gene06074 | MS.gene50720 | -0.808357 | 3.22E-50 | -1.69E-46 |
| MS.gene06074 | MS.gene50722 | -0.80191 | 7.20E-49 | -1.69E-46 |
| MS.gene06074 | MS.gene50727 | -0.806154 | 9.44E-50 | -1.69E-46 |
| MS.gene06074 | MS.gene55801 | 0.999026 | 1.35E-286 | -1.69E-46 |
| MS.gene06074 | MS.gene58000 | -0.804453 | 2.14E-49 | -1.69E-46 |
| MS.gene06074 | MS.gene58291 | -0.800755 | 1.24E-48 | -1.69E-46 |
| MS.gene06074 | MS.gene58293 | -0.805908 | 1.06E-49 | -1.69E-46 |
| MS.gene06074 | MS.gene58464 | 0.827373 | 1.62E-54 | -1.69E-46 |
| MS.gene06074 | MS.gene59006 | 0.808243 | 3.41E-50 | -1.69E-46 |
| MS.gene06074 | MS.gene59273 | 0.865852 | 4.37E-65 | -1.69E-46 |
| MS.gene06074 | MS.gene63502 | 0.814225 | 1.72E-51 | -1.69E-46 |
| MS.gene06074 | MS.gene64006 | -0.8012 | 1.01E-48 | -1.69E-46 |
| MS.gene06074 | MS.gene64686 | 0.800354 | 1.50E-48 | -1.69E-46 |
| MS.gene06074 | MS.gene65865 | 0.806942 | 6.44E-50 | -1.69E-46 |
| MS.gene06074 | MS.gene66460 | -0.806992 | 6.28E-50 | -1.69E-46 |
| MS.gene06074 | MS.gene67682 | 0.816386 | 5.68E-52 | -1.69E-46 |
| MS.gene06074 | MS.gene68121 | 0.827172 | 1.81E-54 | -1.69E-46 |
| MS.gene06074 | MS.gene68851 | 0.833257 | 5.92E-56 | -1.69E-46 |
| MS.gene06074 | MS.gene68948 | 0.847487 | 1.12E-59 | -1.69E-46 |
| MS.gene06074 | MS.gene71737 | 0.812634 | 3.84E-51 | -1.69E-46 |
| MS.gene06074 | MS.gene72186 | 0.815213 | 1.04E-51 | -1.69E-46 |
| MS.gene06074 | MS.gene74969 | 0.803999 | 2.67E-49 | -1.69E-46 |
| MS.gene06074 | MS.gene75523 | 0.808858 | 2.52E-50 | -1.69E-46 |
| MS.gene06074 | MS.gene75780 | -0.817609 | 3.02E-52 | -1.69E-46 |
| MS.gene06074 | MS.gene76628 | -0.832796 | 7.70E-56 | -1.69E-46 |
| MS.gene06074 | MS.gene77034 | -0.812257 | 4.64E-51 | -1.69E-46 |
| MS.gene06074 | MS.gene77471 | 0.803369 | 3.60E-49 | -1.69E-46 |
| MS.gene06074 | MS.gene82243 | -0.810245 | 1.27E-50 | -1.69E-46 |
| MS.gene06074 | MS.gene84568 | 0.828579 | 8.31E-55 | -1.69E-46 |
| MS.gene06074 | MS.gene85638 | 0.835128 | 2.01E-56 | -1.69E-46 |
| MS.gene06074 | MS.gene88816 | 0.803862 | 2.85E-49 | -1.69E-46 |
| MS.gene06074 | MS.gene89218 | -0.803238 | 3.84E-49 | -1.69E-46 |
| MS.gene06074 | MS.gene89261 | 0.825245 | 5.21E-54 | -1.69E-46 |
| MS.gene06074 | MS.gene89332 | -0.819781 | 9.70E-53 | -1.69E-46 |
| MS.gene06074 | MS.gene90201 | 0.846994 | 1.53E-59 | -1.69E-46 |
| MS.gene06074 | MS.gene90479 | 0.800984 | 1.12E-48 | -1.69E-46 |
| MS.gene06074 | MS.gene91157 | -0.808383 | 3.18E-50 | -1.69E-46 |
| MS.gene06074 | MS.gene91158 | -0.805019 | 1.63E-49 | -1.69E-46 |
| MS.gene06074 | MS.gene91570 | -0.802139 | 6.46E-49 | -1.69E-46 |
| MS.gene06074 | MS.gene92939 | 0.812325 | 4.49E-51 | -1.69E-46 |
| MS.gene06074 | MS.gene94790 | 0.805191 | 1.50E-49 | -1.69E-46 |
| MS.gene06074 | MS.gene95478 | 0.801566 | 8.47E-49 | -1.69E-46 |
| MS.gene06074 | MS.gene98076 | 0.823356 | 1.45E-53 | -1.69E-46 |
| MS.gene06074 | MS.gene98078 | 0.801185 | 1.01E-48 | -1.69E-46 |
| MS.gene06074 | MS.gene98501 | 0.809695 | 1.67E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06074.t1 | MTR_8g099495 | 99.048 | 105 | 1 | 0 | 1 | 105 | 175 | 279 | 1.99e-73 | 225 |
| MS.gene06074.t1 | MTR_8g099515 | 43.011 | 93 | 48 | 3 | 17 | 104 | 174 | 266 | 2.62e-16 | 74.7 |
| MS.gene06074.t1 | MTR_3g091200 | 31.897 | 116 | 65 | 4 | 3 | 104 | 145 | 260 | 7.97e-16 | 73.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06074.t1 | AT5G53110 | 29.412 | 102 | 61 | 2 | 14 | 104 | 157 | 258 | 3.74e-11 | 59.7 |
Find 42 sgRNAs with CRISPR-Local
Find 101 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGTCCTCAATACTTCATT+TGG | 0.314741 | 4.1:+4582670 | None:intergenic |
| AAGAGACGAATTGGTTGTTT+TGG | 0.346013 | 4.1:-4583983 | MS.gene06074:CDS |
| GAGGAAGATGTGGATTGGTT+GGG | 0.360207 | 4.1:-4583893 | MS.gene06074:CDS |
| ATCTTCCACTTTCACCAAGC+TGG | 0.369581 | 4.1:+4582743 | None:intergenic |
| CTTTCAAGGAAAGTCAAGTA+TGG | 0.374180 | 4.1:-4582958 | MS.gene06074:CDS |
| GTATGGTTTAAGCCTAGGTT+TGG | 0.409546 | 4.1:-4582941 | MS.gene06074:CDS |
| TATGGTTTAAGCCTAGGTTT+GGG | 0.424366 | 4.1:-4582940 | MS.gene06074:CDS |
| GCTTCACAATTTCCACAATC+AGG | 0.434686 | 4.1:+4583921 | None:intergenic |
| TCTTCCACTTTCACCAAGCT+GGG | 0.464098 | 4.1:+4582744 | None:intergenic |
| AGCCTAGGTTTGGGAATACC+TGG | 0.477958 | 4.1:-4582931 | MS.gene06074:CDS |
| GGAGGAAGATGTGGATTGGT+TGG | 0.478263 | 4.1:-4583894 | MS.gene06074:CDS |
| TACCGGTGGAAGAGACGAAT+TGG | 0.478685 | 4.1:-4583992 | MS.gene06074:CDS |
| GTCAAGTATGGTTTAAGCCT+AGG | 0.480880 | 4.1:-4582946 | MS.gene06074:CDS |
| GTCTGCATGTAGGTCTTTCA+AGG | 0.481860 | 4.1:-4582972 | MS.gene06074:intron |
| AGGAAGATGTGGATTGGTTG+GGG | 0.491695 | 4.1:-4583892 | MS.gene06074:CDS |
| AAAACCCAGCTTGGTGAAAG+TGG | 0.493961 | 4.1:-4582748 | MS.gene06074:CDS |
| TTGGGAATACCTGGACTCCT+AGG | 0.494340 | 4.1:-4582922 | MS.gene06074:intron |
| ATTGACTATTTCACCTTGGG+TGG | 0.497251 | 4.1:+4583836 | None:intergenic |
| CAAATGTTGTCACTTGGCCT+AGG | 0.507133 | 4.1:+4582718 | None:intergenic |
| GATGTCCACGGTGTAGCAAA+AGG | 0.511204 | 4.1:+4584044 | None:intergenic |
| GAACATGAATTATTCGATTG+TGG | 0.526227 | 4.1:-4584084 | None:intergenic |
| TATTTCGTCAGCTTTGATAC+CGG | 0.536087 | 4.1:-4584009 | MS.gene06074:CDS |
| AACCAATTCGTCTCTTCCAC+CGG | 0.549752 | 4.1:+4583990 | None:intergenic |
| ACAATTAGACCTAGGAGTCC+AGG | 0.561924 | 4.1:+4582913 | None:intergenic |
| TTCAAACATACCGTTGCAGT+GGG | 0.575801 | 4.1:-4583949 | MS.gene06074:CDS |
| TGTTATGATCTTCCCACCCA+AGG | 0.578358 | 4.1:-4583849 | MS.gene06074:intron |
| ATCAGCCAAATGAAGTATTG+AGG | 0.579109 | 4.1:-4582675 | None:intergenic |
| AGATACCCTAAAACCCAGCT+TGG | 0.586664 | 4.1:-4582757 | MS.gene06074:CDS |
| ATTCAAACATACCGTTGCAG+TGG | 0.592135 | 4.1:-4583950 | MS.gene06074:CDS |
| CAGTGGGATGATCCTGATTG+TGG | 0.594321 | 4.1:-4583933 | MS.gene06074:CDS |
| TTCGTCAGCTTTGATACCGG+TGG | 0.597171 | 4.1:-4584006 | MS.gene06074:CDS |
| TTGACTATTTCACCTTGGGT+GGG | 0.599087 | 4.1:+4583837 | None:intergenic |
| GTGAAAGTGGAAGATTGCCT+AGG | 0.611829 | 4.1:-4582735 | MS.gene06074:CDS |
| ATAGAGCAAATGTTGTCACT+TGG | 0.619697 | 4.1:+4582712 | None:intergenic |
| AATTCACATAATGATGTCCA+CGG | 0.636628 | 4.1:+4584032 | None:intergenic |
| TCAGGATCATCCCACTGCAA+CGG | 0.649351 | 4.1:+4583939 | None:intergenic |
| GAAGCACGTGGAGGAAGATG+TGG | 0.650882 | 4.1:-4583903 | MS.gene06074:CDS |
| ACGTGGAGGAAGATGTGGAT+TGG | 0.656368 | 4.1:-4583898 | MS.gene06074:CDS |
| GTCCACGGTGTAGCAAAAGG+AGG | 0.695275 | 4.1:+4584047 | None:intergenic |
| GTCCAGGTATTCCCAAACCT+AGG | 0.704709 | 4.1:+4582929 | None:intergenic |
| TGTGGAAATTGTGAAGCACG+TGG | 0.742242 | 4.1:-4583915 | MS.gene06074:CDS |
| GGAAATTGTGAAGCACGTGG+AGG | 0.769055 | 4.1:-4583912 | MS.gene06074:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATATCAAAATAGATA+CGG | - | chr4.1:4583074-4583093 | MS.gene06074:intron | 10.0% |
| !! | AAAAAACATGAAGTTTAATT+TGG | - | chr4.1:4583181-4583200 | MS.gene06074:intron | 15.0% |
| !! | AACAAGTTATGTAATTAATT+AGG | + | chr4.1:4583733-4583752 | None:intergenic | 15.0% |
| !!! | TTTTGATATTTTTTTTTCCA+AGG | + | chr4.1:4583068-4583087 | None:intergenic | 15.0% |
| !! | AAAATCAAATCAAACAAATG+CGG | - | chr4.1:4583223-4583242 | MS.gene06074:intron | 20.0% |
| !! | ACATTTGATTCAAATGTATT+TGG | + | chr4.1:4583366-4583385 | None:intergenic | 20.0% |
| !!! | TCATGTTTTTTTTTATCTTG+CGG | + | chr4.1:4583172-4583191 | None:intergenic | 20.0% |
| !!! | TGCAAATTTAGATCATATTT+TGG | - | chr4.1:4582968-4582987 | MS.gene06074:intron | 20.0% |
| !!! | TTTGGTTTTCTTTTAACTTT+TGG | - | chr4.1:4582986-4583005 | MS.gene06074:intron | 20.0% |
| ! | TGTAATTAATTAGGATCCTT+AGG | + | chr4.1:4583724-4583743 | None:intergenic | 25.0% |
| !!! | AATAGTTGTGTTGTTTTCAT+TGG | + | chr4.1:4583462-4583481 | None:intergenic | 25.0% |
| !!! | AGTTTCAATTTGGATTAGTT+CGG | - | chr4.1:4583395-4583414 | MS.gene06074:intron | 25.0% |
| !!! | ATAGTTGTGTTGTTTTCATT+GGG | + | chr4.1:4583461-4583480 | None:intergenic | 25.0% |
| !!! | ATTTTTTTGTGTGTTTAGCT+CGG | - | chr4.1:4583279-4583298 | MS.gene06074:intron | 25.0% |
| !!! | TTTGGTTTTGTTTGATTTTG+AGG | - | chr4.1:4583129-4583148 | MS.gene06074:intron | 25.0% |
| !!! | TTTTTTTTCCAAGGACTATT+TGG | + | chr4.1:4583059-4583078 | None:intergenic | 25.0% |
| AACTAAACGATTGTGTTTCA+TGG | + | chr4.1:4583509-4583528 | None:intergenic | 30.0% | |
| AAGACCCATAACAAAAATTG+GGG | + | chr4.1:4583962-4583981 | None:intergenic | 30.0% | |
| AATTCACATAATGATGTCCA+CGG | + | chr4.1:4582728-4582747 | None:intergenic | 30.0% | |
| AGAAATATCCAAATAGTCCT+TGG | - | chr4.1:4583048-4583067 | MS.gene06074:intron | 30.0% | |
| ATGTAAACACAATTAGACCT+AGG | + | chr4.1:4583855-4583874 | None:intergenic | 30.0% | |
| CAAGACCCATAACAAAAATT+GGG | + | chr4.1:4583963-4583982 | None:intergenic | 30.0% | |
| TAGGTCTAATTGTGTTTACA+TGG | - | chr4.1:4583854-4583873 | MS.gene06074:CDS | 30.0% | |
| TATGCAAAAAGAAGAACACA+AGG | - | chr4.1:4583881-4583900 | MS.gene06074:CDS | 30.0% | |
| TCAAGACCCATAACAAAAAT+TGG | + | chr4.1:4583964-4583983 | None:intergenic | 30.0% | |
| TGAAACACAATCGTTTAGTT+TGG | - | chr4.1:4583509-4583528 | MS.gene06074:intron | 30.0% | |
| TTGAAAATTCAGTGCTTGTT+TGG | + | chr4.1:4583921-4583940 | None:intergenic | 30.0% | |
| ! | ATCATTGACTATTTCACCTT+GGG | + | chr4.1:4582927-4582946 | None:intergenic | 30.0% |
| ! | GAAACACAATCGTTTAGTTT+GGG | - | chr4.1:4583510-4583529 | MS.gene06074:intron | 30.0% |
| ! | TTCTTTTCCGTTGTTCTTTT+GGG | - | chr4.1:4583762-4583781 | MS.gene06074:intron | 30.0% |
| ! | TTTCTTTTCCGTTGTTCTTT+TGG | - | chr4.1:4583761-4583780 | MS.gene06074:intron | 30.0% |
| !! | TCGTTTTTGCAGTTTCAATT+TGG | - | chr4.1:4583385-4583404 | MS.gene06074:intron | 30.0% |
| !!! | ATTCATAGTGCATTTTGGTT+TGG | - | chr4.1:4583111-4583130 | MS.gene06074:intron | 30.0% |
| !!! | GTTTTTCTATTGTGTTGGTT+TGG | - | chr4.1:4583424-4583443 | MS.gene06074:intron | 30.0% |
| !!! | TAGTTGTGTTGTTTTCATTG+GGG | + | chr4.1:4583460-4583479 | None:intergenic | 30.0% |
| AATCTCCACTATAAGTCCTA+AGG | - | chr4.1:4583705-4583724 | MS.gene06074:intron | 35.0% | |
| AGACCCATAACAAAAATTGG+GGG | + | chr4.1:4583961-4583980 | None:intergenic | 35.0% | |
| ATAGAGCAAATGTTGTCACT+TGG | + | chr4.1:4584048-4584067 | None:intergenic | 35.0% | |
| CAAATCAAACAAATGCGGTT+TGG | - | chr4.1:4583228-4583247 | MS.gene06074:intron | 35.0% | |
| CTTTCAAGGAAAGTCAAGTA+TGG | - | chr4.1:4583799-4583818 | MS.gene06074:intron | 35.0% | |
| TATGGTTTAAGCCTAGGTTT+GGG | - | chr4.1:4583817-4583836 | MS.gene06074:intron | 35.0% | |
| ! | AAGAGACGAATTGGTTGTTT+TGG | - | chr4.1:4582774-4582793 | MS.gene06074:intron | 35.0% |
| ! | CATCATTGACTATTTCACCT+TGG | + | chr4.1:4582928-4582947 | None:intergenic | 35.0% |
| ! | TATTTCGTCAGCTTTGATAC+CGG | - | chr4.1:4582748-4582767 | MS.gene06074:CDS | 35.0% |
| ! | TCTTTTCCGTTGTTCTTTTG+GGG | - | chr4.1:4583763-4583782 | MS.gene06074:intron | 35.0% |
| !! | GAGGTATTCATAGTGCATTT+TGG | - | chr4.1:4583106-4583125 | MS.gene06074:intron | 35.0% |
| !! | TTTTGTTATGGGTCTTGACA+GGG | - | chr4.1:4583966-4583985 | MS.gene06074:CDS | 35.0% |
| !! | TTTTTGTTATGGGTCTTGAC+AGG | - | chr4.1:4583965-4583984 | MS.gene06074:CDS | 35.0% |
| !!! | AGTTGTGTTGTTTTCATTGG+GGG | + | chr4.1:4583459-4583478 | None:intergenic | 35.0% |
| AGGATCCTTAGGACTTATAG+TGG | + | chr4.1:4583713-4583732 | None:intergenic | 40.0% | |
| ATTCAAACATACCGTTGCAG+TGG | - | chr4.1:4582807-4582826 | MS.gene06074:intron | 40.0% | |
| ATTGACTATTTCACCTTGGG+TGG | + | chr4.1:4582924-4582943 | None:intergenic | 40.0% | |
| GACCCATAACAAAAATTGGG+GGG | + | chr4.1:4583960-4583979 | None:intergenic | 40.0% | |
| GCAAATTGAACTGAACCATG+CGG | - | chr4.1:4583320-4583339 | MS.gene06074:intron | 40.0% | |
| GCATGGTTCAGTTCAATTTG+CGG | + | chr4.1:4583321-4583340 | None:intergenic | 40.0% | |
| GCTTCACAATTTCCACAATC+AGG | + | chr4.1:4582839-4582858 | None:intergenic | 40.0% | |
| GTATGGTTTAAGCCTAGGTT+TGG | - | chr4.1:4583816-4583835 | MS.gene06074:intron | 40.0% | |
| GTCAAGTATGGTTTAAGCCT+AGG | - | chr4.1:4583811-4583830 | MS.gene06074:intron | 40.0% | |
| GTCTACATTTGCAACTACAG+CGG | - | chr4.1:4583532-4583551 | MS.gene06074:intron | 40.0% | |
| TTCAAACATACCGTTGCAGT+GGG | - | chr4.1:4582808-4582827 | MS.gene06074:intron | 40.0% | |
| TTGACTATTTCACCTTGGGT+GGG | + | chr4.1:4582923-4582942 | None:intergenic | 40.0% | |
| ! | TCGCGGTTTTTCTATTGTGT+TGG | - | chr4.1:4583419-4583438 | MS.gene06074:intron | 40.0% |
| ! | TTTCACCAAGCTGGGTTTTA+GGG | + | chr4.1:4584008-4584027 | None:intergenic | 40.0% |
| !! | ATTTGGATTAGTTCGGTTCG+CGG | - | chr4.1:4583402-4583421 | MS.gene06074:intron | 40.0% |
| !! | CAAACAAATGCGGTTTGGTT+TGG | - | chr4.1:4583233-4583252 | MS.gene06074:intron | 40.0% |
| !! | CACCCCCCAATTTTTGTTAT+GGG | - | chr4.1:4583955-4583974 | MS.gene06074:CDS | 40.0% |
| !!! | CTTTTTTTTACTCAGCCGCA+TGG | + | chr4.1:4583338-4583357 | None:intergenic | 40.0% |
| AACCAATTCGTCTCTTCCAC+CGG | + | chr4.1:4582770-4582789 | None:intergenic | 45.0% | |
| ACAATTAGACCTAGGAGTCC+AGG | + | chr4.1:4583847-4583866 | None:intergenic | 45.0% | |
| AGATACCCTAAAACCCAGCT+TGG | - | chr4.1:4584000-4584019 | MS.gene06074:CDS | 45.0% | |
| ATAGATACGGCGAGAACTAG+AGG | - | chr4.1:4583087-4583106 | MS.gene06074:intron | 45.0% | |
| ATCTTCCACTTTCACCAAGC+TGG | + | chr4.1:4584017-4584036 | None:intergenic | 45.0% | |
| GTCTGCATGTAGGTCTTTCA+AGG | - | chr4.1:4583785-4583804 | MS.gene06074:intron | 45.0% | |
| GTGAAAGTGGAAGATTGCCT+AGG | - | chr4.1:4584022-4584041 | MS.gene06074:CDS | 45.0% | |
| TCTTCCACTTTCACCAAGCT+GGG | + | chr4.1:4584016-4584035 | None:intergenic | 45.0% | |
| TGCAGACCCCAAAAGAACAA+CGG | + | chr4.1:4583772-4583791 | None:intergenic | 45.0% | |
| TGTGGAAATTGTGAAGCACG+TGG | - | chr4.1:4582842-4582861 | MS.gene06074:intron | 45.0% | |
| TGTTATGATCTTCCCACCCA+AGG | - | chr4.1:4582908-4582927 | MS.gene06074:intron | 45.0% | |
| ! | AAAACCCAGCTTGGTGAAAG+TGG | - | chr4.1:4584009-4584028 | MS.gene06074:CDS | 45.0% |
| ! | CAAATGTTGTCACTTGGCCT+AGG | + | chr4.1:4584042-4584061 | None:intergenic | 45.0% |
| ! | CTTTCACCAAGCTGGGTTTT+AGG | + | chr4.1:4584009-4584028 | None:intergenic | 45.0% |
| ! | GCACCCCCCAATTTTTGTTA+TGG | - | chr4.1:4583954-4583973 | MS.gene06074:CDS | 45.0% |
| !! | AGGAAGATGTGGATTGGTTG+GGG | - | chr4.1:4582865-4582884 | MS.gene06074:intron | 45.0% |
| !! | GAGGAAGATGTGGATTGGTT+GGG | - | chr4.1:4582864-4582883 | MS.gene06074:intron | 45.0% |
| !! | GCGGTTTGGTTTGGTTGTTA+CGG | - | chr4.1:4583242-4583261 | MS.gene06074:intron | 45.0% |
| !!! | TTCTTTTGGGGTCTGCATGT+AGG | - | chr4.1:4583775-4583794 | MS.gene06074:intron | 45.0% |
| ACGTGGAGGAAGATGTGGAT+TGG | - | chr4.1:4582859-4582878 | MS.gene06074:intron | 50.0% | |
| AGCCTAGGTTTGGGAATACC+TGG | - | chr4.1:4583826-4583845 | MS.gene06074:intron | 50.0% | |
| CAGTGGGATGATCCTGATTG+TGG | - | chr4.1:4582824-4582843 | MS.gene06074:intron | 50.0% | |
| GATGTCCACGGTGTAGCAAA+AGG | + | chr4.1:4582716-4582735 | None:intergenic | 50.0% | |
| GGAAATTGTGAAGCACGTGG+AGG | - | chr4.1:4582845-4582864 | MS.gene06074:intron | 50.0% | |
| GTCCAGGTATTCCCAAACCT+AGG | + | chr4.1:4583831-4583850 | None:intergenic | 50.0% | |
| TACCGGTGGAAGAGACGAAT+TGG | - | chr4.1:4582765-4582784 | MS.gene06074:CDS | 50.0% | |
| TCAGGATCATCCCACTGCAA+CGG | + | chr4.1:4582821-4582840 | None:intergenic | 50.0% | |
| TTGGGAATACCTGGACTCCT+AGG | - | chr4.1:4583835-4583854 | MS.gene06074:intron | 50.0% | |
| ! | ATCCTCCTTTTGCTACACCG+TGG | - | chr4.1:4582708-4582727 | MS.gene06074:CDS | 50.0% |
| ! | TGGGGGGTGCGTCATAATAA+AGG | + | chr4.1:4583944-4583963 | None:intergenic | 50.0% |
| ! | TTCGTCAGCTTTGATACCGG+TGG | - | chr4.1:4582751-4582770 | MS.gene06074:CDS | 50.0% |
| !! | GGAGGAAGATGTGGATTGGT+TGG | - | chr4.1:4582863-4582882 | MS.gene06074:intron | 50.0% |
| GAAGCACGTGGAGGAAGATG+TGG | - | chr4.1:4582854-4582873 | MS.gene06074:intron | 55.0% | |
| GTCCACGGTGTAGCAAAAGG+AGG | + | chr4.1:4582713-4582732 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 4582677 | 4584102 | 4582677 | ID=MS.gene06074 |
| chr4.1 | mRNA | 4582677 | 4584102 | 4582677 | ID=MS.gene06074.t1;Parent=MS.gene06074 |
| chr4.1 | exon | 4583850 | 4584102 | 4583850 | ID=MS.gene06074.t1.exon1;Parent=MS.gene06074.t1 |
| chr4.1 | CDS | 4583850 | 4584102 | 4583850 | ID=cds.MS.gene06074.t1;Parent=MS.gene06074.t1 |
| chr4.1 | exon | 4582923 | 4582982 | 4582923 | ID=MS.gene06074.t1.exon2;Parent=MS.gene06074.t1 |
| chr4.1 | CDS | 4582923 | 4582982 | 4582923 | ID=cds.MS.gene06074.t1;Parent=MS.gene06074.t1 |
| chr4.1 | exon | 4582677 | 4582792 | 4582677 | ID=MS.gene06074.t1.exon3;Parent=MS.gene06074.t1 |
| chr4.1 | CDS | 4582677 | 4582792 | 4582677 | ID=cds.MS.gene06074.t1;Parent=MS.gene06074.t1 |
| Gene Sequence |
| Protein sequence |
