Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96584.t1 | XP_003622943.1 | 93.3 | 195 | 13 | 0 | 1 | 195 | 1 | 195 | 1.10E-96 | 362.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96584.t1 | Q9ZTW3 | 71.7 | 198 | 56 | 0 | 1 | 198 | 1 | 198 | 1.6e-77 | 290.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96584.t1 | G7L1A5 | 93.3 | 195 | 13 | 0 | 1 | 195 | 1 | 195 | 7.7e-97 | 362.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049611 | MS.gene96584 | 0.826586 | 2.50E-54 | -1.69E-46 |
| MS.gene049634 | MS.gene96584 | 0.82611 | 3.25E-54 | -1.69E-46 |
| MS.gene050216 | MS.gene96584 | -0.804333 | 2.27E-49 | -1.69E-46 |
| MS.gene050381 | MS.gene96584 | 0.846976 | 1.55E-59 | -1.69E-46 |
| MS.gene050612 | MS.gene96584 | -0.804635 | 1.97E-49 | -1.69E-46 |
| MS.gene05079 | MS.gene96584 | 0.804385 | 2.22E-49 | -1.69E-46 |
| MS.gene050868 | MS.gene96584 | -0.824214 | 9.11E-54 | -1.69E-46 |
| MS.gene050871 | MS.gene96584 | -0.823087 | 1.67E-53 | -1.69E-46 |
| MS.gene05104 | MS.gene96584 | 0.825652 | 4.17E-54 | -1.69E-46 |
| MS.gene051127 | MS.gene96584 | 0.824375 | 8.35E-54 | -1.69E-46 |
| MS.gene051138 | MS.gene96584 | 0.87388 | 1.04E-67 | -1.69E-46 |
| MS.gene051632 | MS.gene96584 | 0.802596 | 5.21E-49 | -1.69E-46 |
| MS.gene052802 | MS.gene96584 | 0.805009 | 1.64E-49 | -1.69E-46 |
| MS.gene052898 | MS.gene96584 | 0.82128 | 4.39E-53 | -1.69E-46 |
| MS.gene053420 | MS.gene96584 | 0.830195 | 3.37E-55 | -1.69E-46 |
| MS.gene053488 | MS.gene96584 | 0.851893 | 6.60E-61 | -1.69E-46 |
| MS.gene053561 | MS.gene96584 | 0.83879 | 2.33E-57 | -1.69E-46 |
| MS.gene054054 | MS.gene96584 | 0.834316 | 3.22E-56 | -1.69E-46 |
| MS.gene054708 | MS.gene96584 | 0.807113 | 5.92E-50 | -1.69E-46 |
| MS.gene055124 | MS.gene96584 | 0.847773 | 9.35E-60 | -1.69E-46 |
| MS.gene055154 | MS.gene96584 | 0.827067 | 1.92E-54 | -1.69E-46 |
| MS.gene055202 | MS.gene96584 | 0.829875 | 4.03E-55 | -1.69E-46 |
| MS.gene055942 | MS.gene96584 | 0.813818 | 2.11E-51 | -1.69E-46 |
| MS.gene056224 | MS.gene96584 | 0.8037 | 3.08E-49 | -1.69E-46 |
| MS.gene056313 | MS.gene96584 | 0.809382 | 1.94E-50 | -1.69E-46 |
| MS.gene056856 | MS.gene96584 | 0.813117 | 3.01E-51 | -1.69E-46 |
| MS.gene057014 | MS.gene96584 | 0.824874 | 6.37E-54 | -1.69E-46 |
| MS.gene058068 | MS.gene96584 | 0.805436 | 1.34E-49 | -1.69E-46 |
| MS.gene058093 | MS.gene96584 | 0.841799 | 3.82E-58 | -1.69E-46 |
| MS.gene058099 | MS.gene96584 | 0.860322 | 2.24E-63 | -1.69E-46 |
| MS.gene058108 | MS.gene96584 | 0.830096 | 3.56E-55 | -1.69E-46 |
| MS.gene058109 | MS.gene96584 | 0.814437 | 1.54E-51 | -1.69E-46 |
| MS.gene058117 | MS.gene96584 | 0.801634 | 8.21E-49 | -1.69E-46 |
| MS.gene058171 | MS.gene96584 | 0.864605 | 1.08E-64 | -1.69E-46 |
| MS.gene058173 | MS.gene96584 | 0.85297 | 3.25E-61 | -1.69E-46 |
| MS.gene058175 | MS.gene96584 | 0.867519 | 1.29E-65 | -1.69E-46 |
| MS.gene058179 | MS.gene96584 | 0.80854 | 2.95E-50 | -1.69E-46 |
| MS.gene058603 | MS.gene96584 | 0.810006 | 1.43E-50 | -1.69E-46 |
| MS.gene058840 | MS.gene96584 | 0.820628 | 6.20E-53 | -1.69E-46 |
| MS.gene059037 | MS.gene96584 | 0.816098 | 6.59E-52 | -1.69E-46 |
| MS.gene059038 | MS.gene96584 | 0.801114 | 1.05E-48 | -1.69E-46 |
| MS.gene059045 | MS.gene96584 | 0.825789 | 3.87E-54 | -1.69E-46 |
| MS.gene059223 | MS.gene96584 | 0.823664 | 1.23E-53 | -1.69E-46 |
| MS.gene059690 | MS.gene96584 | 0.878729 | 2.22E-69 | -1.69E-46 |
| MS.gene059691 | MS.gene96584 | 0.843547 | 1.31E-58 | -1.69E-46 |
| MS.gene059694 | MS.gene96584 | 0.869383 | 3.23E-66 | -1.69E-46 |
| MS.gene059697 | MS.gene96584 | 0.858463 | 8.10E-63 | -1.69E-46 |
| MS.gene059865 | MS.gene96584 | -0.816164 | 6.37E-52 | -1.69E-46 |
| MS.gene059916 | MS.gene96584 | 0.834571 | 2.78E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96584.t1 | MTR_7g058640 | 93.333 | 195 | 13 | 0 | 1 | 195 | 1 | 195 | 8.29e-138 | 384 |
| MS.gene96584.t1 | MTR_7g058640 | 95.349 | 172 | 8 | 0 | 1 | 172 | 1 | 172 | 3.02e-123 | 347 |
| MS.gene96584.t1 | MTR_4g022570 | 74.359 | 195 | 50 | 0 | 1 | 195 | 1 | 195 | 4.62e-111 | 317 |
| MS.gene96584.t1 | MTR_1g047720 | 65.258 | 213 | 74 | 0 | 1 | 213 | 1 | 213 | 9.02e-110 | 314 |
| MS.gene96584.t1 | MTR_7g058900 | 70.256 | 195 | 58 | 0 | 1 | 195 | 1 | 195 | 5.85e-104 | 299 |
| MS.gene96584.t1 | MTR_4g083490 | 66.839 | 193 | 64 | 0 | 3 | 195 | 5 | 197 | 1.45e-100 | 290 |
| MS.gene96584.t1 | MTR_2g436870 | 60.094 | 213 | 85 | 0 | 1 | 213 | 1 | 213 | 3.88e-99 | 287 |
| MS.gene96584.t1 | MTR_2g028790 | 65.285 | 193 | 67 | 0 | 3 | 195 | 7 | 199 | 3.76e-97 | 282 |
| MS.gene96584.t1 | MTR_1g111890 | 46.753 | 231 | 104 | 2 | 1 | 212 | 1 | 231 | 6.67e-79 | 236 |
| MS.gene96584.t1 | MTR_7g058640 | 94.017 | 117 | 7 | 0 | 79 | 195 | 1 | 117 | 1.00e-76 | 227 |
| MS.gene96584.t1 | MTR_1g047710 | 60.902 | 133 | 51 | 1 | 56 | 187 | 3 | 135 | 4.78e-57 | 177 |
| MS.gene96584.t1 | MTR_4g022470 | 71.028 | 107 | 31 | 0 | 64 | 170 | 10 | 116 | 1.88e-52 | 165 |
| MS.gene96584.t1 | MTR_5g089370 | 36.649 | 191 | 118 | 3 | 5 | 194 | 2 | 190 | 4.68e-38 | 131 |
| MS.gene96584.t1 | MTR_4g052550 | 32.461 | 191 | 126 | 3 | 5 | 194 | 2 | 190 | 2.01e-36 | 127 |
| MS.gene96584.t1 | MTR_4g115390 | 30.047 | 213 | 141 | 5 | 6 | 213 | 3 | 212 | 6.05e-29 | 108 |
| MS.gene96584.t1 | MTR_4g022550 | 71.053 | 38 | 11 | 0 | 158 | 195 | 10 | 47 | 1.85e-12 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96584.t1 | AT2G33120 | 72.308 | 195 | 54 | 0 | 1 | 195 | 1 | 195 | 1.17e-107 | 308 |
| MS.gene96584.t1 | AT1G04750 | 71.795 | 195 | 55 | 0 | 1 | 195 | 1 | 195 | 4.02e-107 | 307 |
| MS.gene96584.t1 | AT1G04760 | 68.000 | 200 | 64 | 0 | 1 | 200 | 1 | 200 | 2.48e-106 | 305 |
| MS.gene96584.t1 | AT1G04760 | 68.000 | 200 | 64 | 0 | 1 | 200 | 1 | 200 | 2.48e-106 | 305 |
| MS.gene96584.t1 | AT2G33120 | 68.966 | 203 | 55 | 1 | 1 | 195 | 1 | 203 | 1.99e-104 | 301 |
| MS.gene96584.t1 | AT2G32670 | 69.231 | 195 | 60 | 0 | 1 | 195 | 66 | 260 | 5.17e-104 | 301 |
| MS.gene96584.t1 | AT4G15780 | 60.656 | 183 | 71 | 1 | 1 | 182 | 1 | 183 | 6.09e-83 | 244 |
| MS.gene96584.t1 | AT2G33110 | 60.513 | 195 | 73 | 1 | 1 | 195 | 1 | 191 | 6.92e-83 | 246 |
| MS.gene96584.t1 | AT3G54300 | 47.210 | 233 | 100 | 2 | 1 | 212 | 1 | 231 | 6.76e-78 | 234 |
| MS.gene96584.t1 | AT3G54300 | 47.210 | 233 | 100 | 2 | 1 | 212 | 1 | 231 | 6.76e-78 | 234 |
| MS.gene96584.t1 | AT3G54300 | 47.210 | 233 | 100 | 2 | 1 | 212 | 1 | 231 | 6.76e-78 | 234 |
| MS.gene96584.t1 | AT2G33110 | 63.095 | 168 | 62 | 0 | 1 | 168 | 1 | 168 | 3.03e-76 | 228 |
| MS.gene96584.t1 | AT1G04750 | 70.940 | 117 | 34 | 0 | 79 | 195 | 1 | 117 | 1.67e-58 | 181 |
| MS.gene96584.t1 | AT1G04750 | 70.940 | 117 | 34 | 0 | 79 | 195 | 1 | 117 | 1.67e-58 | 181 |
| MS.gene96584.t1 | AT1G04750 | 70.940 | 117 | 34 | 0 | 79 | 195 | 1 | 117 | 1.67e-58 | 181 |
| MS.gene96584.t1 | AT5G11150 | 33.175 | 211 | 134 | 4 | 5 | 213 | 2 | 207 | 7.61e-39 | 134 |
| MS.gene96584.t1 | AT5G11150 | 33.175 | 211 | 134 | 4 | 5 | 213 | 2 | 207 | 1.25e-38 | 133 |
| MS.gene96584.t1 | AT5G22360 | 31.731 | 208 | 138 | 3 | 5 | 210 | 2 | 207 | 1.76e-38 | 132 |
| MS.gene96584.t1 | AT4G32150 | 34.211 | 190 | 122 | 3 | 5 | 193 | 2 | 189 | 1.40e-34 | 122 |
| MS.gene96584.t1 | AT2G25340 | 32.105 | 190 | 126 | 3 | 5 | 193 | 2 | 189 | 4.80e-32 | 116 |
| MS.gene96584.t1 | AT2G33120 | 67.742 | 62 | 20 | 0 | 134 | 195 | 52 | 113 | 4.65e-22 | 88.2 |
| MS.gene96584.t1 | AT3G24890 | 44.681 | 94 | 46 | 2 | 113 | 200 | 14 | 107 | 2.99e-17 | 75.1 |
Find 42 sgRNAs with CRISPR-Local
Find 78 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAAGCTTGAATAAAGAATT+TGG | 0.138378 | 7.3:-46000361 | MS.gene96584:CDS |
| CTTTGCAGGCACAAGATTTA+AGG | 0.164312 | 7.3:-45999667 | MS.gene96584:intron |
| GCAAGTTTGCTAACCTCTTC+TGG | 0.229459 | 7.3:+46000194 | None:intergenic |
| CAATCTTCACTTGACGATTA+AGG | 0.242055 | 7.3:+46000019 | None:intergenic |
| AGCTATTTCAGCAAAGTTTC+CGG | 0.255031 | 7.3:+46000870 | None:intergenic |
| TGCATATGCTCCTTCAATTT+CGG | 0.281591 | 7.3:+46000233 | None:intergenic |
| GGCGCGTGGCACGGTGATTC+TGG | 0.320729 | 7.3:-46000911 | MS.gene96584:CDS |
| TGGTTGCTGGGAGTCTTTGC+AGG | 0.323885 | 7.3:+46000839 | None:intergenic |
| AAAGCTTGAATAAAGAATTT+GGG | 0.394970 | 7.3:-46000360 | MS.gene96584:intron |
| TCCGGTGAAGTTGGTGTGCT+CGG | 0.407070 | 7.3:+46000888 | None:intergenic |
| AACTGTCAACCTTCGTGATC+AGG | 0.421098 | 7.3:-45999980 | MS.gene96584:intron |
| TTTGCAGGCACAAGATTTAA+GGG | 0.423640 | 7.3:-45999666 | MS.gene96584:intron |
| CAAGAAAGGCCATAGCAATA+TGG | 0.430285 | 7.3:+46000446 | None:intergenic |
| ATCACTTGTATACAGCTTTG+TGG | 0.457723 | 7.3:-46000932 | MS.gene96584:CDS |
| TATGTTGGAAAATATTGATC+AGG | 0.458760 | 7.3:-46000135 | MS.gene96584:intron |
| TTCAGAACATGAAGATAAAA+CGG | 0.473508 | 7.3:-45999610 | MS.gene96584:CDS |
| CTCCTTGATGTGATCAAGAA+AGG | 0.487927 | 7.3:+46000432 | None:intergenic |
| AGCTTACTGCCTTGTTGCTG+TGG | 0.489435 | 7.3:-46000482 | MS.gene96584:CDS |
| TCAAGTTCAAGATGTTATGT+TGG | 0.490196 | 7.3:-46000150 | MS.gene96584:CDS |
| AGCAAAGTTTCCGGTGAAGT+TGG | 0.500993 | 7.3:+46000879 | None:intergenic |
| CAGCTTTGTGGCGCGTGGCA+CGG | 0.506415 | 7.3:-46000920 | MS.gene96584:CDS |
| GTAATTTAGACCGAAATTGA+AGG | 0.508592 | 7.3:-46000243 | MS.gene96584:intron |
| GGCAAGTACTGAATCCATCA+TGG | 0.518155 | 7.3:+46000767 | None:intergenic |
| GCCGAGCACACCAACTTCAC+CGG | 0.518367 | 7.3:-46000889 | MS.gene96584:CDS |
| GGCCTTTCTTGATCACATCA+AGG | 0.528346 | 7.3:-46000434 | MS.gene96584:CDS |
| TTCAACTACCTCGCCCATGA+TGG | 0.533919 | 7.3:-46000781 | MS.gene96584:CDS |
| ATCATGGGCGAGGTAGTTGA+AGG | 0.542753 | 7.3:+46000783 | None:intergenic |
| ACTTGCGAAAGTAAAAGCTC+AGG | 0.550493 | 7.3:-46000177 | MS.gene96584:CDS |
| GTATACAGCTTTGTGGCGCG+TGG | 0.567820 | 7.3:-46000925 | MS.gene96584:CDS |
| TACTGAATCCATCATGGGCG+AGG | 0.571090 | 7.3:+46000773 | None:intergenic |
| TTTACCAAAAGATATGGTGG+AGG | 0.594903 | 7.3:-46000406 | MS.gene96584:CDS |
| TGCAGGCACAAGATTTAAGG+GGG | 0.606935 | 7.3:-45999664 | MS.gene96584:intron |
| TTGCAGGCACAAGATTTAAG+GGG | 0.610788 | 7.3:-45999665 | MS.gene96584:intron |
| GGCAATTAAGGAGAAAGATG+TGG | 0.621585 | 7.3:-45999634 | MS.gene96584:CDS |
| CAAAAGACTCCACAGCAACA+AGG | 0.623781 | 7.3:+46000473 | None:intergenic |
| GTAGTTGAAGGTATGACCAT+CGG | 0.631667 | 7.3:+46000795 | None:intergenic |
| GCAAGTACTGAATCCATCAT+GGG | 0.632742 | 7.3:+46000768 | None:intergenic |
| TTGTGTGGAACATCCAGAAG+AGG | 0.637264 | 7.3:-46000207 | MS.gene96584:CDS |
| AAATTCACTTACAACACCGA+TGG | 0.653817 | 7.3:-46000811 | MS.gene96584:CDS |
| CTTTCTTGATCACATCAAGG+AGG | 0.668827 | 7.3:-46000431 | MS.gene96584:CDS |
| GGAGCATATGCAATATTGTG+TGG | 0.672159 | 7.3:-46000222 | MS.gene96584:CDS |
| ATAAAAGGACCTGATCACGA+AGG | 0.753478 | 7.3:+45999971 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAATGTAATTTAGTTATTTA+TGG | + | chr7.3:46000725-46000744 | None:intergenic | 15.0% |
| !! | TAAAAGAAAAAAATAAAACG+AGG | + | chr7.3:45999753-45999772 | None:intergenic | 15.0% |
| !! | AAAAGCTTGAATAAAGAATT+TGG | - | chr7.3:46000135-46000154 | MS.gene96584:intron | 20.0% |
| !! | AAAGCTTGAATAAAGAATTT+GGG | - | chr7.3:46000136-46000155 | MS.gene96584:CDS | 20.0% |
| !! | AGGTATATATATGTCTATAT+TGG | - | chr7.3:46000381-46000400 | MS.gene96584:CDS | 20.0% |
| !! | TTATAGTTATGTAACTGATA+TGG | - | chr7.3:46000795-46000814 | MS.gene96584:CDS | 20.0% |
| !! | TTTATGGATGAACAAATAAA+AGG | + | chr7.3:46000543-46000562 | None:intergenic | 20.0% |
| !!! | TCTTTTACATAATCTAATTG+TGG | - | chr7.3:45999766-45999785 | MS.gene96584:intron | 20.0% |
| !!! | TTTTTTTTATTGTATGTGCA+TGG | - | chr7.3:46000231-46000250 | MS.gene96584:CDS | 20.0% |
| ! | CAAATCATAAATTTCCTTAG+AGG | + | chr7.3:45999923-45999942 | None:intergenic | 25.0% |
| ! | TATGTTGGAAAATATTGATC+AGG | - | chr7.3:46000361-46000380 | MS.gene96584:CDS | 25.0% |
| ! | TTCAGAACATGAAGATAAAA+CGG | - | chr7.3:46000886-46000905 | MS.gene96584:CDS | 25.0% |
| !! | ATTTTTACACACACATGAAT+AGG | - | chr7.3:46000679-46000698 | MS.gene96584:intron | 25.0% |
| !! | TTTTTACACACACATGAATA+GGG | - | chr7.3:46000680-46000699 | MS.gene96584:intron | 25.0% |
| !!! | ATTTTATTTGTTTTGTCTGC+AGG | - | chr7.3:46000453-46000472 | MS.gene96584:CDS | 25.0% |
| GTAATTTAGACCGAAATTGA+AGG | - | chr7.3:46000253-46000272 | MS.gene96584:intron | 30.0% | |
| TAACTGATATGGTTTGAATG+TGG | - | chr7.3:46000806-46000825 | MS.gene96584:CDS | 30.0% | |
| TCAAATGCATTTACATGTAC+TGG | - | chr7.3:45999872-45999891 | MS.gene96584:intron | 30.0% | |
| TCAAGTTCAAGATGTTATGT+TGG | - | chr7.3:46000346-46000365 | MS.gene96584:intron | 30.0% | |
| ! | GAGGATTTTACCAAAAGATA+TGG | - | chr7.3:46000084-46000103 | MS.gene96584:intron | 30.0% |
| ! | GATTTTACCAAAAGATATGG+TGG | - | chr7.3:46000087-46000106 | MS.gene96584:intron | 30.0% |
| ! | GTTGTAAGTGAATTTTGTGT+TGG | + | chr7.3:45999680-45999699 | None:intergenic | 30.0% |
| ! | TTTTACACACACATGAATAG+GGG | - | chr7.3:46000681-46000700 | MS.gene96584:intron | 30.0% |
| !! | AGTGAAGATTGATGTTTTGA+TGG | - | chr7.3:46000489-46000508 | MS.gene96584:intron | 30.0% |
| !! | TGTACTGGTTTCATATATGT+CGG | - | chr7.3:45999887-45999906 | MS.gene96584:intron | 30.0% |
| AAATTCACTTACAACACCGA+TGG | - | chr7.3:45999685-45999704 | MS.gene96584:intron | 35.0% | |
| ATCACTTGTATACAGCTTTG+TGG | - | chr7.3:45999564-45999583 | MS.gene96584:CDS | 35.0% | |
| CAATCTTCACTTGACGATTA+AGG | + | chr7.3:46000480-46000499 | None:intergenic | 35.0% | |
| TAGCTATGACACATGGTTTA+TGG | + | chr7.3:46000559-46000578 | None:intergenic | 35.0% | |
| TATGTCTATATTGGATCCTC+TGG | - | chr7.3:46000390-46000409 | MS.gene96584:CDS | 35.0% | |
| TCAATGCAATGCGATATATG+AGG | - | chr7.3:45999798-45999817 | MS.gene96584:intron | 35.0% | |
| TGCATATGCTCCTTCAATTT+CGG | + | chr7.3:46000266-46000285 | None:intergenic | 35.0% | |
| TTTACCAAAAGATATGGTGG+AGG | - | chr7.3:46000090-46000109 | MS.gene96584:intron | 35.0% | |
| TTTGCAGGCACAAGATTTAA+GGG | - | chr7.3:46000830-46000849 | MS.gene96584:CDS | 35.0% | |
| ! | AGCTATTTCAGCAAAGTTTC+CGG | + | chr7.3:45999629-45999648 | None:intergenic | 35.0% |
| ! | CAGTATTATGTTTTCTGCGA+TGG | + | chr7.3:46000610-46000629 | None:intergenic | 35.0% |
| ! | TTTTCCTCCACCATATCTTT+TGG | + | chr7.3:46000097-46000116 | None:intergenic | 35.0% |
| ! | TTTTGATCGCCATATTGCTA+TGG | - | chr7.3:46000041-46000060 | MS.gene96584:intron | 35.0% |
| !!! | TGAATTTTGTGTTGGTTGCT+GGG | + | chr7.3:45999672-45999691 | None:intergenic | 35.0% |
| AACGATCTGTGCTTCAAAGT+CGG | + | chr7.3:46000418-46000437 | None:intergenic | 40.0% | |
| AAGATTTAAGGGGGAATGCA+GGG | - | chr7.3:46000841-46000860 | MS.gene96584:CDS | 40.0% | |
| ACTTGCGAAAGTAAAAGCTC+AGG | - | chr7.3:46000319-46000338 | MS.gene96584:intron | 40.0% | |
| ATAAAAGGACCTGATCACGA+AGG | + | chr7.3:46000528-46000547 | None:intergenic | 40.0% | |
| CAAGAAAGGCCATAGCAATA+TGG | + | chr7.3:46000053-46000072 | None:intergenic | 40.0% | |
| CTCCTTGATGTGATCAAGAA+AGG | + | chr7.3:46000067-46000086 | None:intergenic | 40.0% | |
| CTTTCTTGATCACATCAAGG+AGG | - | chr7.3:46000065-46000084 | MS.gene96584:intron | 40.0% | |
| CTTTGCAGGCACAAGATTTA+AGG | - | chr7.3:46000829-46000848 | MS.gene96584:CDS | 40.0% | |
| GGAGCATATGCAATATTGTG+TGG | - | chr7.3:46000274-46000293 | MS.gene96584:intron | 40.0% | |
| GGCAATTAAGGAGAAAGATG+TGG | - | chr7.3:46000862-46000881 | MS.gene96584:CDS | 40.0% | |
| TCATCACTAGCTATGACACA+TGG | + | chr7.3:46000566-46000585 | None:intergenic | 40.0% | |
| TTGCAGGCACAAGATTTAAG+GGG | - | chr7.3:46000831-46000850 | MS.gene96584:CDS | 40.0% | |
| ! | GTAGTTGAAGGTATGACCAT+CGG | + | chr7.3:45999704-45999723 | None:intergenic | 40.0% |
| !! | GCAAGTACTGAATCCATCAT+GGG | + | chr7.3:45999731-45999750 | None:intergenic | 40.0% |
| !!! | GTGAATTTTGTGTTGGTTGC+TGG | + | chr7.3:45999673-45999692 | None:intergenic | 40.0% |
| AACTGTCAACCTTCGTGATC+AGG | - | chr7.3:46000516-46000535 | MS.gene96584:intron | 45.0% | |
| AGCAAAGTTTCCGGTGAAGT+TGG | + | chr7.3:45999620-45999639 | None:intergenic | 45.0% | |
| CAAAAGACTCCACAGCAACA+AGG | + | chr7.3:46000026-46000045 | None:intergenic | 45.0% | |
| CAAGATTTAAGGGGGAATGC+AGG | - | chr7.3:46000840-46000859 | MS.gene96584:CDS | 45.0% | |
| GCAATGCGATATATGAGGCA+CGG | - | chr7.3:45999803-45999822 | MS.gene96584:intron | 45.0% | |
| GGCCTTTCTTGATCACATCA+AGG | - | chr7.3:46000062-46000081 | MS.gene96584:intron | 45.0% | |
| TCGGACATTGAACACCTCTA+AGG | - | chr7.3:45999906-45999925 | MS.gene96584:intron | 45.0% | |
| TGCAGGCACAAGATTTAAGG+GGG | - | chr7.3:46000832-46000851 | MS.gene96584:CDS | 45.0% | |
| TTGTGTGGAACATCCAGAAG+AGG | - | chr7.3:46000289-46000308 | MS.gene96584:intron | 45.0% | |
| ! | TGGTTTGAATGTGGCTTTGC+AGG | - | chr7.3:46000815-46000834 | MS.gene96584:CDS | 45.0% |
| !! | GCAAGTTTGCTAACCTCTTC+TGG | + | chr7.3:46000305-46000324 | None:intergenic | 45.0% |
| !! | GGCAAGTACTGAATCCATCA+TGG | + | chr7.3:45999732-45999751 | None:intergenic | 45.0% |
| ATCATGGGCGAGGTAGTTGA+AGG | + | chr7.3:45999716-45999735 | None:intergenic | 50.0% | |
| TACTGAATCCATCATGGGCG+AGG | + | chr7.3:45999726-45999745 | None:intergenic | 50.0% | |
| TTCAACTACCTCGCCCATGA+TGG | - | chr7.3:45999715-45999734 | MS.gene96584:intron | 50.0% | |
| ! | AGCTTACTGCCTTGTTGCTG+TGG | - | chr7.3:46000014-46000033 | MS.gene96584:CDS | 50.0% |
| GGGGGAATGCAGGGCAATTA+AGG | - | chr7.3:46000850-46000869 | MS.gene96584:CDS | 55.0% | |
| TGGTTGCTGGGAGTCTTTGC+AGG | + | chr7.3:45999660-45999679 | None:intergenic | 55.0% | |
| ! | GTATACAGCTTTGTGGCGCG+TGG | - | chr7.3:45999571-45999590 | MS.gene96584:CDS | 55.0% |
| ! | TGCTTCAAAGTCGGCTCCAG+AGG | + | chr7.3:46000409-46000428 | None:intergenic | 55.0% |
| !! | TCCGGTGAAGTTGGTGTGCT+CGG | + | chr7.3:45999611-45999630 | None:intergenic | 55.0% |
| GCCGAGCACACCAACTTCAC+CGG | - | chr7.3:45999607-45999626 | MS.gene96584:CDS | 60.0% | |
| ! | CAGCTTTGTGGCGCGTGGCA+CGG | - | chr7.3:45999576-45999595 | MS.gene96584:CDS | 65.0% |
| GGCGCGTGGCACGGTGATTC+TGG | - | chr7.3:45999585-45999604 | MS.gene96584:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 45999553 | 46000965 | 45999553 | ID=MS.gene96584 |
| chr7.3 | mRNA | 45999553 | 46000965 | 45999553 | ID=MS.gene96584.t1;Parent=MS.gene96584 |
| chr7.3 | exon | 46000776 | 46000965 | 46000776 | ID=MS.gene96584.t1.exon1;Parent=MS.gene96584.t1 |
| chr7.3 | CDS | 46000776 | 46000965 | 46000776 | ID=cds.MS.gene96584.t1;Parent=MS.gene96584.t1 |
| chr7.3 | exon | 46000361 | 46000502 | 46000361 | ID=MS.gene96584.t1.exon2;Parent=MS.gene96584.t1 |
| chr7.3 | CDS | 46000361 | 46000502 | 46000361 | ID=cds.MS.gene96584.t1;Parent=MS.gene96584.t1 |
| chr7.3 | exon | 46000136 | 46000256 | 46000136 | ID=MS.gene96584.t1.exon3;Parent=MS.gene96584.t1 |
| chr7.3 | CDS | 46000136 | 46000256 | 46000136 | ID=cds.MS.gene96584.t1;Parent=MS.gene96584.t1 |
| chr7.3 | exon | 45999981 | 46000043 | 45999981 | ID=MS.gene96584.t1.exon4;Parent=MS.gene96584.t1 |
| chr7.3 | CDS | 45999981 | 46000043 | 45999981 | ID=cds.MS.gene96584.t1;Parent=MS.gene96584.t1 |
| chr7.3 | exon | 45999553 | 45999681 | 45999553 | ID=MS.gene96584.t1.exon5;Parent=MS.gene96584.t1 |
| chr7.3 | CDS | 45999553 | 45999681 | 45999553 | ID=cds.MS.gene96584.t1;Parent=MS.gene96584.t1 |
| Gene Sequence |
| Protein sequence |
