Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79474.t1 | XP_013446977.1 | 93.2 | 324 | 22 | 0 | 1 | 324 | 1 | 324 | 2.00E-171 | 611.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79474.t1 | Q9STY7 | 47.9 | 309 | 160 | 1 | 1 | 309 | 1 | 308 | 7.4e-74 | 278.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79474.t1 | A0A072TU08 | 93.2 | 324 | 22 | 0 | 1 | 324 | 1 | 324 | 1.4e-171 | 611.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050581 | MS.gene79474 | 0.818731 | 1.68E-52 | -1.69E-46 |
| MS.gene052287 | MS.gene79474 | 0.800683 | 1.28E-48 | -1.69E-46 |
| MS.gene05296 | MS.gene79474 | 0.802152 | 6.43E-49 | -1.69E-46 |
| MS.gene053209 | MS.gene79474 | 0.803394 | 3.56E-49 | -1.69E-46 |
| MS.gene053813 | MS.gene79474 | 0.813301 | 2.74E-51 | -1.69E-46 |
| MS.gene055277 | MS.gene79474 | 0.809166 | 2.16E-50 | -1.69E-46 |
| MS.gene056191 | MS.gene79474 | 0.82092 | 5.31E-53 | -1.69E-46 |
| MS.gene056410 | MS.gene79474 | 0.819687 | 1.02E-52 | -1.69E-46 |
| MS.gene056931 | MS.gene79474 | 0.818306 | 2.10E-52 | -1.69E-46 |
| MS.gene056933 | MS.gene79474 | 0.814358 | 1.60E-51 | -1.69E-46 |
| MS.gene056935 | MS.gene79474 | 0.806838 | 6.77E-50 | -1.69E-46 |
| MS.gene057796 | MS.gene79474 | 0.817487 | 3.22E-52 | -1.69E-46 |
| MS.gene05806 | MS.gene79474 | 0.813193 | 2.90E-51 | -1.69E-46 |
| MS.gene058459 | MS.gene79474 | 0.811288 | 7.55E-51 | -1.69E-46 |
| MS.gene058903 | MS.gene79474 | 0.803967 | 2.71E-49 | -1.69E-46 |
| MS.gene059294 | MS.gene79474 | 0.81833 | 2.07E-52 | -1.69E-46 |
| MS.gene059688 | MS.gene79474 | 0.813987 | 1.94E-51 | -1.69E-46 |
| MS.gene059692 | MS.gene79474 | 0.817394 | 3.37E-52 | -1.69E-46 |
| MS.gene059695 | MS.gene79474 | 0.81225 | 4.66E-51 | -1.69E-46 |
| MS.gene059711 | MS.gene79474 | 0.856858 | 2.42E-62 | -1.69E-46 |
| MS.gene059974 | MS.gene79474 | 0.888346 | 6.40E-73 | -1.69E-46 |
| MS.gene060005 | MS.gene79474 | 0.839736 | 1.33E-57 | -1.69E-46 |
| MS.gene060559 | MS.gene79474 | 0.803848 | 2.87E-49 | -1.69E-46 |
| MS.gene060800 | MS.gene79474 | 0.810911 | 9.11E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79474.t1 | MTR_8g096580 | 93.210 | 324 | 22 | 0 | 1 | 324 | 1 | 324 | 0.0 | 629 |
| MS.gene79474.t1 | MTR_8g096620 | 46.474 | 312 | 153 | 2 | 1 | 299 | 1 | 311 | 1.28e-93 | 282 |
| MS.gene79474.t1 | MTR_5g008850 | 40.645 | 310 | 169 | 4 | 1 | 296 | 1 | 309 | 1.12e-72 | 229 |
| MS.gene79474.t1 | MTR_8g096610 | 59.162 | 191 | 59 | 6 | 126 | 311 | 54 | 230 | 3.28e-65 | 205 |
| MS.gene79474.t1 | MTR_4g052350 | 30.667 | 225 | 148 | 5 | 45 | 264 | 14 | 235 | 7.96e-21 | 90.5 |
| MS.gene79474.t1 | MTR_4g052340 | 32.143 | 196 | 122 | 4 | 45 | 235 | 14 | 203 | 2.43e-19 | 86.7 |
| MS.gene79474.t1 | MTR_4g052300 | 30.263 | 228 | 145 | 6 | 45 | 264 | 8 | 229 | 4.10e-19 | 85.9 |
| MS.gene79474.t1 | MTR_4g052320 | 29.258 | 229 | 147 | 5 | 45 | 264 | 8 | 230 | 6.51e-19 | 85.1 |
| MS.gene79474.t1 | MTR_7g105590 | 30.366 | 191 | 122 | 4 | 45 | 230 | 8 | 192 | 1.49e-18 | 82.8 |
| MS.gene79474.t1 | MTR_7g080410 | 29.070 | 258 | 169 | 8 | 43 | 293 | 36 | 286 | 8.55e-18 | 82.8 |
| MS.gene79474.t1 | MTR_3g087850 | 32.367 | 207 | 127 | 7 | 34 | 235 | 13 | 211 | 8.89e-18 | 82.4 |
| MS.gene79474.t1 | MTR_3g085740 | 31.944 | 216 | 135 | 8 | 43 | 251 | 73 | 283 | 2.09e-17 | 81.6 |
| MS.gene79474.t1 | MTR_7g080410 | 32.308 | 195 | 126 | 5 | 43 | 232 | 36 | 229 | 2.40e-17 | 81.3 |
| MS.gene79474.t1 | MTR_4g097510 | 31.088 | 193 | 124 | 5 | 46 | 235 | 3 | 189 | 2.77e-17 | 80.9 |
| MS.gene79474.t1 | MTR_6g023610 | 29.293 | 198 | 125 | 7 | 48 | 237 | 16 | 206 | 1.80e-16 | 78.6 |
| MS.gene79474.t1 | MTR_7g071680 | 29.756 | 205 | 133 | 6 | 45 | 242 | 29 | 229 | 1.29e-15 | 76.6 |
| MS.gene79474.t1 | MTR_8g442750 | 33.000 | 200 | 113 | 7 | 45 | 230 | 14 | 206 | 4.09e-15 | 75.1 |
| MS.gene79474.t1 | MTR_7g110140 | 33.831 | 201 | 126 | 4 | 45 | 242 | 6 | 202 | 7.18e-15 | 73.9 |
| MS.gene79474.t1 | MTR_7g107670 | 31.959 | 194 | 118 | 7 | 45 | 232 | 33 | 218 | 7.91e-15 | 73.9 |
| MS.gene79474.t1 | MTR_4g086400 | 27.778 | 198 | 132 | 3 | 51 | 237 | 10 | 207 | 1.13e-14 | 75.1 |
| MS.gene79474.t1 | MTR_4g078630 | 30.769 | 195 | 126 | 3 | 48 | 239 | 22 | 210 | 1.39e-14 | 73.2 |
| MS.gene79474.t1 | MTR_3g087860 | 35.338 | 133 | 82 | 3 | 105 | 235 | 66 | 196 | 2.94e-14 | 72.4 |
| MS.gene79474.t1 | MTR_6g023910 | 27.451 | 204 | 138 | 5 | 41 | 237 | 6 | 206 | 3.13e-14 | 72.0 |
| MS.gene79474.t1 | MTR_4g086410 | 26.263 | 198 | 135 | 3 | 51 | 237 | 10 | 207 | 3.33e-14 | 73.6 |
| MS.gene79474.t1 | MTR_2g090165 | 28.634 | 227 | 142 | 6 | 43 | 254 | 4 | 225 | 1.65e-13 | 69.7 |
| MS.gene79474.t1 | MTR_7g113650 | 28.230 | 209 | 141 | 4 | 45 | 246 | 40 | 246 | 3.26e-13 | 69.3 |
| MS.gene79474.t1 | MTR_4g084800 | 33.588 | 131 | 80 | 3 | 45 | 171 | 13 | 140 | 9.55e-13 | 65.5 |
| MS.gene79474.t1 | MTR_7g083870 | 28.846 | 208 | 125 | 6 | 40 | 236 | 30 | 225 | 1.58e-12 | 67.4 |
| MS.gene79474.t1 | MTR_6g035395 | 33.163 | 196 | 95 | 9 | 43 | 227 | 3 | 173 | 1.68e-12 | 66.6 |
| MS.gene79474.t1 | MTR_7g105460 | 29.798 | 198 | 128 | 5 | 45 | 237 | 13 | 204 | 3.98e-12 | 65.9 |
| MS.gene79474.t1 | MTR_3g020670 | 30.392 | 204 | 125 | 7 | 48 | 242 | 19 | 214 | 4.55e-12 | 65.9 |
| MS.gene79474.t1 | MTR_6g023590 | 27.363 | 201 | 125 | 8 | 48 | 237 | 16 | 206 | 5.63e-12 | 65.5 |
| MS.gene79474.t1 | MTR_4g058840 | 26.383 | 235 | 146 | 10 | 48 | 262 | 14 | 241 | 1.34e-11 | 64.3 |
| MS.gene79474.t1 | MTR_4g058820 | 26.383 | 235 | 146 | 10 | 48 | 262 | 14 | 241 | 1.34e-11 | 64.3 |
| MS.gene79474.t1 | MTR_4g132850 | 25.521 | 192 | 132 | 5 | 48 | 235 | 10 | 194 | 1.94e-11 | 63.5 |
| MS.gene79474.t1 | MTR_7g110130 | 29.187 | 209 | 130 | 6 | 45 | 244 | 6 | 205 | 2.08e-11 | 63.9 |
| MS.gene79474.t1 | MTR_4g058810 | 26.316 | 247 | 155 | 10 | 36 | 262 | 2 | 241 | 5.53e-11 | 62.8 |
| MS.gene79474.t1 | MTR_7g105580 | 26.064 | 188 | 110 | 5 | 45 | 227 | 8 | 171 | 7.06e-11 | 62.0 |
| MS.gene79474.t1 | MTR_2g022600 | 29.231 | 195 | 121 | 5 | 50 | 233 | 38 | 226 | 9.25e-11 | 62.8 |
| MS.gene79474.t1 | MTR_3g113870 | 29.787 | 188 | 122 | 7 | 31 | 216 | 10 | 189 | 9.30e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79474.t1 | AT5G50600 | 46.945 | 311 | 152 | 3 | 1 | 299 | 1 | 310 | 1.11e-95 | 287 |
| MS.gene79474.t1 | AT5G50700 | 46.945 | 311 | 152 | 3 | 1 | 299 | 1 | 310 | 1.11e-95 | 287 |
| MS.gene79474.t1 | AT3G47350 | 49.355 | 310 | 153 | 4 | 1 | 309 | 1 | 307 | 3.78e-95 | 285 |
| MS.gene79474.t1 | AT3G47360 | 48.148 | 297 | 153 | 1 | 13 | 309 | 13 | 308 | 2.64e-92 | 277 |
| MS.gene79474.t1 | AT5G50690 | 49.827 | 289 | 138 | 5 | 7 | 291 | 7 | 292 | 4.66e-92 | 276 |
| MS.gene79474.t1 | AT5G50590 | 49.827 | 289 | 138 | 5 | 7 | 291 | 7 | 292 | 4.66e-92 | 276 |
| MS.gene79474.t1 | AT5G50770 | 45.455 | 308 | 155 | 2 | 1 | 296 | 1 | 307 | 1.27e-89 | 271 |
| MS.gene79474.t1 | AT3G47350 | 51.331 | 263 | 124 | 4 | 1 | 262 | 1 | 260 | 1.30e-81 | 250 |
| MS.gene79474.t1 | AT5G50690 | 52.423 | 227 | 105 | 3 | 7 | 232 | 7 | 231 | 8.26e-77 | 236 |
| MS.gene79474.t1 | AT5G50590 | 52.423 | 227 | 105 | 3 | 7 | 232 | 7 | 231 | 8.26e-77 | 236 |
| MS.gene79474.t1 | AT4G10020 | 43.000 | 300 | 160 | 5 | 4 | 293 | 5 | 303 | 2.81e-75 | 236 |
| MS.gene79474.t1 | AT3G47350 | 42.581 | 310 | 130 | 5 | 1 | 309 | 1 | 263 | 1.45e-68 | 215 |
| MS.gene79474.t1 | AT3G03330 | 29.682 | 283 | 189 | 8 | 36 | 310 | 32 | 312 | 7.31e-21 | 91.7 |
| MS.gene79474.t1 | AT5G10050 | 31.863 | 204 | 112 | 6 | 46 | 238 | 6 | 193 | 3.74e-20 | 89.0 |
| MS.gene79474.t1 | AT5G65205 | 31.220 | 205 | 114 | 6 | 42 | 235 | 3 | 191 | 7.27e-18 | 82.8 |
| MS.gene79474.t1 | AT1G49670 | 32.143 | 196 | 122 | 4 | 51 | 235 | 10 | 205 | 2.94e-17 | 82.8 |
| MS.gene79474.t1 | AT1G49670 | 32.143 | 196 | 122 | 4 | 51 | 235 | 10 | 205 | 3.60e-17 | 82.8 |
| MS.gene79474.t1 | AT1G24360 | 31.628 | 215 | 137 | 7 | 43 | 251 | 72 | 282 | 4.94e-17 | 80.9 |
| MS.gene79474.t1 | AT3G51680 | 31.401 | 207 | 130 | 5 | 43 | 240 | 30 | 233 | 8.19e-16 | 77.0 |
| MS.gene79474.t1 | AT1G54870 | 30.542 | 203 | 130 | 5 | 48 | 242 | 87 | 286 | 2.62e-15 | 75.9 |
| MS.gene79474.t1 | AT1G54870 | 30.542 | 203 | 130 | 5 | 48 | 242 | 85 | 284 | 2.73e-15 | 75.9 |
| MS.gene79474.t1 | AT3G26770 | 29.648 | 199 | 131 | 6 | 42 | 236 | 38 | 231 | 8.87e-15 | 74.3 |
| MS.gene79474.t1 | AT3G26760 | 28.821 | 229 | 151 | 7 | 17 | 241 | 11 | 231 | 1.10e-14 | 73.9 |
| MS.gene79474.t1 | AT1G52340 | 29.817 | 218 | 144 | 4 | 48 | 259 | 21 | 235 | 1.50e-14 | 73.2 |
| MS.gene79474.t1 | AT3G05260 | 28.311 | 219 | 145 | 6 | 36 | 246 | 28 | 242 | 2.81e-14 | 72.4 |
| MS.gene79474.t1 | AT3G55310 | 26.341 | 205 | 143 | 5 | 45 | 242 | 17 | 220 | 9.98e-13 | 67.8 |
| MS.gene79474.t1 | AT1G63380 | 27.184 | 206 | 141 | 7 | 45 | 242 | 22 | 226 | 1.29e-12 | 67.8 |
| MS.gene79474.t1 | AT1G63380 | 27.184 | 206 | 141 | 7 | 45 | 242 | 15 | 219 | 1.87e-12 | 67.0 |
| MS.gene79474.t1 | AT1G63380 | 27.184 | 206 | 141 | 7 | 45 | 242 | 17 | 221 | 2.13e-12 | 67.0 |
| MS.gene79474.t1 | AT1G63380 | 27.184 | 206 | 141 | 7 | 45 | 242 | 19 | 223 | 2.25e-12 | 67.0 |
| MS.gene79474.t1 | AT1G62610 | 28.365 | 208 | 136 | 8 | 45 | 242 | 14 | 218 | 3.05e-12 | 66.2 |
| MS.gene79474.t1 | AT1G62610 | 28.365 | 208 | 136 | 8 | 45 | 242 | 15 | 219 | 3.26e-12 | 66.2 |
| MS.gene79474.t1 | AT1G62610 | 28.365 | 208 | 136 | 8 | 45 | 242 | 13 | 217 | 3.36e-12 | 66.2 |
| MS.gene79474.t1 | AT3G29250 | 28.431 | 204 | 138 | 5 | 43 | 243 | 42 | 240 | 4.18e-12 | 66.2 |
| MS.gene79474.t1 | AT1G62610 | 28.365 | 208 | 136 | 8 | 45 | 242 | 19 | 223 | 4.21e-12 | 66.2 |
| MS.gene79474.t1 | AT3G12800 | 41.667 | 84 | 48 | 1 | 48 | 131 | 13 | 95 | 4.22e-12 | 66.2 |
| MS.gene79474.t1 | AT3G29250 | 28.713 | 202 | 136 | 5 | 45 | 243 | 42 | 238 | 5.46e-12 | 65.9 |
| MS.gene79474.t1 | AT2G30670 | 32.579 | 221 | 135 | 8 | 44 | 255 | 6 | 221 | 6.29e-12 | 65.5 |
| MS.gene79474.t1 | AT3G29250 | 28.713 | 202 | 136 | 5 | 45 | 243 | 6 | 202 | 9.26e-12 | 64.7 |
| MS.gene79474.t1 | AT3G29260 | 28.079 | 203 | 137 | 5 | 43 | 242 | 4 | 200 | 3.94e-11 | 62.8 |
| MS.gene79474.t1 | AT1G10310 | 28.079 | 203 | 142 | 3 | 48 | 249 | 18 | 217 | 6.38e-11 | 62.0 |
| MS.gene79474.t1 | AT3G46170 | 26.087 | 207 | 141 | 6 | 45 | 242 | 26 | 229 | 7.67e-11 | 62.4 |
Find 74 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTAAATAATGCTGGAGTTTC+TGG | 0.120762 | 4.1:+6229977 | MS.gene79474:CDS |
| AACATATAGCTTACCATAAT+TGG | 0.149058 | 4.1:-6230046 | None:intergenic |
| ATTCACAGGATACAAATTTC+TGG | 0.215325 | 4.1:+6230894 | MS.gene79474:intron |
| TGAATATCCTCTATCAAAAT+TGG | 0.229535 | 4.1:-6230004 | None:intergenic |
| AACTAAATACAATCCAATTA+TGG | 0.273832 | 4.1:+6230033 | MS.gene79474:CDS |
| TGGGCAGAACGACACATCTT+TGG | 0.310099 | 4.1:+6231571 | MS.gene79474:CDS |
| AGAAAAGGTAACATGATGAT+AGG | 0.329910 | 4.1:-6228975 | None:intergenic |
| TCCCCTGATGTTACTATCAT+TGG | 0.348900 | 4.1:+6229768 | MS.gene79474:CDS |
| TCTTGTAGCAGTGGCTGATA+TGG | 0.366276 | 4.1:+6229731 | MS.gene79474:CDS |
| AACGACACATCTTTGGGCTT+TGG | 0.381249 | 4.1:+6231578 | MS.gene79474:CDS |
| TGTATGTGACAAACCCTTCA+TGG | 0.382578 | 4.1:+6231500 | MS.gene79474:CDS |
| GGGCAGAACGACACATCTTT+GGG | 0.386518 | 4.1:+6231572 | MS.gene79474:CDS |
| CAAAACAAATATGGCATTGA+AGG | 0.386732 | 4.1:+6231269 | MS.gene79474:CDS |
| GGTGCTTTATCCTGAGTTAG+TGG | 0.387203 | 4.1:+6231546 | MS.gene79474:CDS |
| ACTGGGGCAGCCTCAGGAAT+TGG | 0.397319 | 4.1:+6229071 | MS.gene79474:CDS |
| CAGGATCATAGTGGTTGCTT+CGG | 0.397364 | 4.1:+6230970 | MS.gene79474:CDS |
| CCGCTTACTGTCTTCAACCT+TGG | 0.411546 | 4.1:-6229802 | None:intergenic |
| AATTTCTGGGGAGCAGTTCA+TGG | 0.418408 | 4.1:+6230908 | MS.gene79474:CDS |
| TTCACAGGATACAAATTTCT+GGG | 0.420623 | 4.1:+6230895 | MS.gene79474:intron |
| GCAAAAGCCTTCTTGTAAGA+AGG | 0.427375 | 4.1:+6231600 | MS.gene79474:CDS |
| ATTGAACTTGGTTGGACCAT+TGG | 0.429928 | 4.1:+6231219 | MS.gene79474:CDS |
| TTATCCTGAGTTAGTGGACT+GGG | 0.457624 | 4.1:+6231552 | MS.gene79474:CDS |
| CTCTAAGAATTGAACTTGGT+TGG | 0.459501 | 4.1:+6231211 | MS.gene79474:CDS |
| AGAAAAGTAGTACTAATCAC+TGG | 0.460585 | 4.1:+6229053 | MS.gene79474:CDS |
| GATGAAACAATCAAACACTT+TGG | 0.473040 | 4.1:+6229831 | MS.gene79474:CDS |
| CTAATCACTGGGGCAGCCTC+AGG | 0.473197 | 4.1:+6229065 | MS.gene79474:CDS |
| AGGATCATAGTGGTTGCTTC+GGG | 0.474071 | 4.1:+6230971 | MS.gene79474:CDS |
| TCAGGATAAAGCACCTGAAA+AGG | 0.475371 | 4.1:-6231538 | None:intergenic |
| AACATCACTTTGAGCCATGA+AGG | 0.478716 | 4.1:-6231514 | None:intergenic |
| GATCATCTGGTAAATAATGC+TGG | 0.481419 | 4.1:+6229968 | MS.gene79474:CDS |
| ATAGTGGTTGCTTCGGGTTG+TGG | 0.481789 | 4.1:+6230977 | MS.gene79474:CDS |
| GGATCGAAATCAGTGACAAT+GGG | 0.482174 | 4.1:-6228953 | None:intergenic |
| TAGAGACTTAATCTTGGAAG+TGG | 0.486255 | 4.1:-6231007 | None:intergenic |
| AGCAATTTGACGAAAAGAAA+AGG | 0.488892 | 4.1:-6228990 | None:intergenic |
| ACATTATAGAGACTTAATCT+TGG | 0.493027 | 4.1:-6231013 | None:intergenic |
| ATTATGGTATCAGGCTAGTA+AGG | 0.497359 | 4.1:+6231164 | MS.gene79474:intron |
| GCACCAATGATAGTAACATC+AGG | 0.503443 | 4.1:-6229771 | None:intergenic |
| GTTTCATGCAGTGGATCATC+TGG | 0.506526 | 4.1:+6229955 | MS.gene79474:intron |
| CATTCATTTGCTGATCCCAA+TGG | 0.513399 | 4.1:-6231439 | None:intergenic |
| GGCATTACAATCGTCACACC+TGG | 0.515479 | 4.1:+6231240 | MS.gene79474:CDS |
| GAAAAGGTAACATGATGATA+GGG | 0.516275 | 4.1:-6228974 | None:intergenic |
| CATTGGTGCAGATGTTTCCA+AGG | 0.517111 | 4.1:+6229785 | MS.gene79474:CDS |
| AGCTCGCCCTTCTTACAAGA+AGG | 0.520921 | 4.1:-6231607 | None:intergenic |
| TAGTCTGCAATGCATTCCAT+TGG | 0.525080 | 4.1:+6231423 | MS.gene79474:CDS |
| GCTGATATGGCAACATCCCT+TGG | 0.533765 | 4.1:+6229744 | MS.gene79474:CDS |
| CAAAAGCCTTCTTGTAAGAA+GGG | 0.535473 | 4.1:+6231601 | MS.gene79474:CDS |
| TTTATCCTGAGTTAGTGGAC+TGG | 0.536192 | 4.1:+6231551 | MS.gene79474:CDS |
| AGTCTGCAATGCATTCCATT+GGG | 0.547551 | 4.1:+6231424 | MS.gene79474:CDS |
| GAGACTCTAAGAATTGAACT+TGG | 0.549331 | 4.1:+6231207 | MS.gene79474:CDS |
| TGGTTGCTTCGGGTTGTGGA+TGG | 0.554870 | 4.1:+6230981 | MS.gene79474:CDS |
| GGGATCGAAATCAGTGACAA+TGG | 0.561465 | 4.1:-6228954 | None:intergenic |
| CTTGGTGCACACAGAAAGCA+TGG | 0.570391 | 4.1:+6229028 | MS.gene79474:CDS |
| GAAAAGTAGTACTAATCACT+GGG | 0.580421 | 4.1:+6229054 | MS.gene79474:CDS |
| CACCAATGATAGTAACATCA+GGG | 0.594536 | 4.1:-6229770 | None:intergenic |
| ACATCACTTTGAGCCATGAA+GGG | 0.597072 | 4.1:-6231513 | None:intergenic |
| CCAAGGTTGAAGACAGTAAG+CGG | 0.605037 | 4.1:+6229802 | MS.gene79474:CDS |
| TCTGCCCAGTCCACTAACTC+AGG | 0.607396 | 4.1:-6231556 | None:intergenic |
| AGAGACTTAATCTTGGAAGT+GGG | 0.610882 | 4.1:-6231006 | None:intergenic |
| AGTAACATCAGGGGAACCAA+GGG | 0.611098 | 4.1:-6229760 | None:intergenic |
| AAAAGAGAATCTTGTAGCAG+TGG | 0.617226 | 4.1:+6229722 | MS.gene79474:CDS |
| ATTATTCTGTCTTAAGCACG+TGG | 0.620818 | 4.1:-6231648 | None:intergenic |
| GCTTATGAGTATGCTAAGAG+AGG | 0.621046 | 4.1:+6229672 | MS.gene79474:CDS |
| TAGTAACATCAGGGGAACCA+AGG | 0.622054 | 4.1:-6229761 | None:intergenic |
| CAGCAAAGGCAGGATCATAG+TGG | 0.623837 | 4.1:+6230961 | MS.gene79474:CDS |
| TCACAGGATACAAATTTCTG+GGG | 0.631294 | 4.1:+6230896 | MS.gene79474:intron |
| GAGTACCTCGCCAATTCCTG+AGG | 0.653628 | 4.1:-6229081 | None:intergenic |
| GGCAGCCTCAGGAATTGGCG+AGG | 0.661286 | 4.1:+6229076 | MS.gene79474:CDS |
| GATCGAAATCAGTGACAATG+GGG | 0.665333 | 4.1:-6228952 | None:intergenic |
| ATCGAAATCAGTGACAATGG+GGG | 0.699761 | 4.1:-6228951 | None:intergenic |
| TGTGACGATTGTAATGCCAA+TGG | 0.709012 | 4.1:-6231235 | None:intergenic |
| ATTGAAGGCATATGAAGACG+AGG | 0.713291 | 4.1:+6231284 | MS.gene79474:CDS |
| ACCAATGATAGTAACATCAG+GGG | 0.719017 | 4.1:-6229769 | None:intergenic |
| AGTATGCTAAGAGAGGAGCA+AGG | 0.743793 | 4.1:+6229679 | MS.gene79474:CDS |
| AAAAGTAGTACTAATCACTG+GGG | 0.769611 | 4.1:+6229055 | MS.gene79474:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTAAACTTATTTTTTGA+AGG | + | chr4.1:6230462-6230481 | MS.gene79474:intron | 10.0% |
| !!! | TTTTTATGAAAAAAAGATTT+AGG | - | chr4.1:6229505-6229524 | None:intergenic | 10.0% |
| !! | ATAATGTTTAAAAATAAGTG+AGG | - | chr4.1:6229320-6229339 | None:intergenic | 15.0% |
| !! | ATATATACCTATATCTAAAT+GGG | - | chr4.1:6230543-6230562 | None:intergenic | 15.0% |
| !! | CTAAATGAAGAATAAAATAA+AGG | - | chr4.1:6230290-6230309 | None:intergenic | 15.0% |
| !! | TATATATACCTATATCTAAA+TGG | - | chr4.1:6230544-6230563 | None:intergenic | 15.0% |
| !! | TTTCTTTAGTAAAAAAAAGA+AGG | - | chr4.1:6230348-6230367 | None:intergenic | 15.0% |
| !!! | CACTTATTTTTAAACATTAT+TGG | + | chr4.1:6229320-6229339 | MS.gene79474:intron | 15.0% |
| !!! | TCTTTTTTTTACTAAAGAAA+AGG | + | chr4.1:6230348-6230367 | MS.gene79474:intron | 15.0% |
| !! | AACTAAATACAATCCAATTA+TGG | + | chr4.1:6230033-6230052 | MS.gene79474:CDS | 20.0% |
| !! | ACTATACCAAATAAAACTTT+AGG | + | chr4.1:6229590-6229609 | MS.gene79474:intron | 20.0% |
| !! | CTATACCAAATAAAACTTTA+GGG | + | chr4.1:6229591-6229610 | MS.gene79474:intron | 20.0% |
| !! | TAGTTATATACTATGATACA+AGG | + | chr4.1:6230712-6230731 | MS.gene79474:intron | 20.0% |
| !! | TATTTAACAAAACCTATGAT+CGG | + | chr4.1:6230646-6230665 | MS.gene79474:intron | 20.0% |
| !! | TCACCAAAATAGATTATTAA+TGG | - | chr4.1:6229115-6229134 | None:intergenic | 20.0% |
| !!! | AATGGGATGTTTTTTTTTTT+AGG | - | chr4.1:6230526-6230545 | None:intergenic | 20.0% |
| !!! | ACAGTTTAAGACTATTATTT+TGG | - | chr4.1:6231134-6231153 | None:intergenic | 20.0% |
| !!! | ACTCCATTAATAATCTATTT+TGG | + | chr4.1:6229109-6229128 | MS.gene79474:intron | 20.0% |
| !!! | ATAAAACCTTTCTCTAAAAA+AGG | + | chr4.1:6229644-6229663 | MS.gene79474:intron | 20.0% |
| !!! | ATATTTGTTTTGATAAAACC+AGG | - | chr4.1:6231261-6231280 | None:intergenic | 20.0% |
| !!! | ATGGGATGTTTTTTTTTTTA+GGG | - | chr4.1:6230525-6230544 | None:intergenic | 20.0% |
| !!! | TGGTTTTATCAAAACAAATA+TGG | + | chr4.1:6231260-6231279 | MS.gene79474:CDS | 20.0% |
| ! | AAAACATCCCATTTAGATAT+AGG | + | chr4.1:6230533-6230552 | MS.gene79474:intron | 25.0% |
| ! | AACATATAGCTTACCATAAT+TGG | - | chr4.1:6230049-6230068 | None:intergenic | 25.0% |
| ! | AACTGTGATTATATGCATTA+TGG | + | chr4.1:6231148-6231167 | MS.gene79474:intron | 25.0% |
| ! | AATCTCATTGCTTAAAAATC+AGG | + | chr4.1:6229397-6229416 | MS.gene79474:intron | 25.0% |
| ! | AATTGAACTACATCAAAAGT+CGG | + | chr4.1:6230817-6230836 | MS.gene79474:intron | 25.0% |
| ! | ACATTATAGAGACTTAATCT+TGG | - | chr4.1:6231016-6231035 | None:intergenic | 25.0% |
| ! | ATAAAATCATGAATGACCAA+GGG | - | chr4.1:6230762-6230781 | None:intergenic | 25.0% |
| ! | ATATGTTCTGCTTCAATTAA+TGG | + | chr4.1:6230062-6230081 | MS.gene79474:intron | 25.0% |
| ! | ATTATATGCATTATGGTATC+AGG | + | chr4.1:6231155-6231174 | MS.gene79474:intron | 25.0% |
| ! | CTTAATAACTATCTCAAAAG+TGG | + | chr4.1:6230851-6230870 | MS.gene79474:intron | 25.0% |
| ! | TAGCTACCTAAACTTTAATT+TGG | - | chr4.1:6230590-6230609 | None:intergenic | 25.0% |
| ! | TATAAAATCATGAATGACCA+AGG | - | chr4.1:6230763-6230782 | None:intergenic | 25.0% |
| ! | TGAATATCCTCTATCAAAAT+TGG | - | chr4.1:6230007-6230026 | None:intergenic | 25.0% |
| ! | TTAAAGTTTAGGTAGCTATT+AGG | + | chr4.1:6230592-6230611 | MS.gene79474:intron | 25.0% |
| ! | TTCACAACATTAACTATTGT+AGG | + | chr4.1:6231399-6231418 | MS.gene79474:intron | 25.0% |
| ! | TTGGTTGAGGTTTAAATTAA+AGG | - | chr4.1:6231344-6231363 | None:intergenic | 25.0% |
| !! | TAATATCTAAAATCCCAATG+CGG | + | chr4.1:6230562-6230581 | MS.gene79474:intron | 25.0% |
| !!! | ATGTACCCTAAAGTTTTATT+TGG | - | chr4.1:6229599-6229618 | None:intergenic | 25.0% |
| !!! | GTTTTATTAGCAACATTAAC+TGG | - | chr4.1:6229631-6229650 | None:intergenic | 25.0% |
| !!! | TGCACTCTGTTTTTTTTAAA+TGG | - | chr4.1:6230103-6230122 | None:intergenic | 25.0% |
| AAAAGTAGTACTAATCACTG+GGG | + | chr4.1:6229055-6229074 | MS.gene79474:CDS | 30.0% | |
| AACTTCTTATCAACTGAACA+AGG | - | chr4.1:6229351-6229370 | None:intergenic | 30.0% | |
| AGAAAAGGTAACATGATGAT+AGG | - | chr4.1:6228978-6228997 | None:intergenic | 30.0% | |
| AGAAAAGTAGTACTAATCAC+TGG | + | chr4.1:6229053-6229072 | MS.gene79474:CDS | 30.0% | |
| AGCAATTTGACGAAAAGAAA+AGG | - | chr4.1:6228993-6229012 | None:intergenic | 30.0% | |
| ATCTCCATCAATTCTCTATA+CGG | + | chr4.1:6229433-6229452 | MS.gene79474:intron | 30.0% | |
| ATTCACAGGATACAAATTTC+TGG | + | chr4.1:6230894-6230913 | MS.gene79474:intron | 30.0% | |
| CTGCTTAGATATTAACTTCA+TGG | + | chr4.1:6230788-6230807 | MS.gene79474:intron | 30.0% | |
| GAAAAGGTAACATGATGATA+GGG | - | chr4.1:6228977-6228996 | None:intergenic | 30.0% | |
| GAAAAGTAGTACTAATCACT+GGG | + | chr4.1:6229054-6229073 | MS.gene79474:CDS | 30.0% | |
| GATGAAACAATCAAACACTT+TGG | + | chr4.1:6229831-6229850 | MS.gene79474:CDS | 30.0% | |
| GCTCATTTATGCAAAAAACT+TGG | + | chr4.1:6229010-6229029 | MS.gene79474:CDS | 30.0% | |
| GTTGAGGTTTAAATTAAAGG+AGG | - | chr4.1:6231341-6231360 | None:intergenic | 30.0% | |
| TAAAAATCAGTCGCAATAGT+TGG | + | chr4.1:6229216-6229235 | MS.gene79474:intron | 30.0% | |
| TTCACAGGATACAAATTTCT+GGG | + | chr4.1:6230895-6230914 | MS.gene79474:intron | 30.0% | |
| TTTACCATACACATTCTAGA+GGG | + | chr4.1:6230129-6230148 | MS.gene79474:intron | 30.0% | |
| ! | CAAAACAAATATGGCATTGA+AGG | + | chr4.1:6231269-6231288 | MS.gene79474:CDS | 30.0% |
| ! | CACTTTTAGTGTTTATTCAC+AGG | + | chr4.1:6230880-6230899 | MS.gene79474:intron | 30.0% |
| ! | TATATCCACATTTTTCTCGT+AGG | - | chr4.1:6229149-6229168 | None:intergenic | 30.0% |
| ! | TCGGTTGGAAAACATTTTTA+AGG | + | chr4.1:6230665-6230684 | MS.gene79474:intron | 30.0% |
| !!! | CTAGTTCCTTTTTTAGAGAA+AGG | - | chr4.1:6229653-6229672 | None:intergenic | 30.0% |
| AAAAGAGAATCTTGTAGCAG+TGG | + | chr4.1:6229722-6229741 | MS.gene79474:CDS | 35.0% | |
| AAATTGTGTGTTTCATGCAG+TGG | + | chr4.1:6229946-6229965 | MS.gene79474:intron | 35.0% | |
| AAGTTAGCAAGCTCATCTTT+GGG | + | chr4.1:6230622-6230641 | MS.gene79474:intron | 35.0% | |
| ACCAATGATAGTAACATCAG+GGG | - | chr4.1:6229772-6229791 | None:intergenic | 35.0% | |
| AGAGACTTAATCTTGGAAGT+GGG | - | chr4.1:6231009-6231028 | None:intergenic | 35.0% | |
| ATTATGGTATCAGGCTAGTA+AGG | + | chr4.1:6231164-6231183 | MS.gene79474:intron | 35.0% | |
| CAAAAGCCTTCTTGTAAGAA+GGG | + | chr4.1:6231601-6231620 | MS.gene79474:CDS | 35.0% | |
| CAAACCGTATAGAGAATTGA+TGG | - | chr4.1:6229440-6229459 | None:intergenic | 35.0% | |
| CACCAATGATAGTAACATCA+GGG | - | chr4.1:6229773-6229792 | None:intergenic | 35.0% | |
| GATCATCTGGTAAATAATGC+TGG | + | chr4.1:6229968-6229987 | MS.gene79474:CDS | 35.0% | |
| GCATCATATGCACACAAAAA+AGG | + | chr4.1:6229268-6229287 | MS.gene79474:intron | 35.0% | |
| GTAAATAATGCTGGAGTTTC+TGG | + | chr4.1:6229977-6229996 | MS.gene79474:CDS | 35.0% | |
| GTTTACCATACACATTCTAG+AGG | + | chr4.1:6230128-6230147 | MS.gene79474:intron | 35.0% | |
| TAACAAAACCTATGATCGGT+TGG | + | chr4.1:6230650-6230669 | MS.gene79474:intron | 35.0% | |
| TAGAGACTTAATCTTGGAAG+TGG | - | chr4.1:6231010-6231029 | None:intergenic | 35.0% | |
| TCACAGGATACAAATTTCTG+GGG | + | chr4.1:6230896-6230915 | MS.gene79474:intron | 35.0% | |
| TCATACCTACGAGAAAAATG+TGG | + | chr4.1:6229141-6229160 | MS.gene79474:intron | 35.0% | |
| TCTTATCAACTGAACAAGGT+CGG | - | chr4.1:6229347-6229366 | None:intergenic | 35.0% | |
| ! | AATACGTAGCATTTTTCCCT+TGG | + | chr4.1:6230743-6230762 | MS.gene79474:intron | 35.0% |
| ! | AATGTTTTCCAACCGATCAT+AGG | - | chr4.1:6230661-6230680 | None:intergenic | 35.0% |
| ! | AGGAGGTGTAATATTATGCT+TGG | - | chr4.1:6231324-6231343 | None:intergenic | 35.0% |
| ! | CAAAGTGATGTTTCCTTTTC+AGG | + | chr4.1:6231525-6231544 | MS.gene79474:CDS | 35.0% |
| ! | CTCTAAGAATTGAACTTGGT+TGG | + | chr4.1:6231211-6231230 | MS.gene79474:CDS | 35.0% |
| ! | GAGACTCTAAGAATTGAACT+TGG | + | chr4.1:6231207-6231226 | MS.gene79474:CDS | 35.0% |
| ! | TCTGCTTCAATTAATGGACA+TGG | + | chr4.1:6230068-6230087 | MS.gene79474:intron | 35.0% |
| ! | TTACCATACACATTCTAGAG+GGG | + | chr4.1:6230130-6230149 | MS.gene79474:intron | 35.0% |
| !! | CGCACTTTTTACTATGTCTT+TGG | - | chr4.1:6231467-6231486 | None:intergenic | 35.0% |
| !! | TGGCATTCCAATTTTGATAG+AGG | + | chr4.1:6229997-6230016 | MS.gene79474:CDS | 35.0% |
| !!! | CTTTGCTGTTTTTGAGATGT+GGG | - | chr4.1:6230949-6230968 | None:intergenic | 35.0% |
| AACATCACTTTGAGCCATGA+AGG | - | chr4.1:6231517-6231536 | None:intergenic | 40.0% | |
| ACATCACTTTGAGCCATGAA+GGG | - | chr4.1:6231516-6231535 | None:intergenic | 40.0% | |
| AGTCTGCAATGCATTCCATT+GGG | + | chr4.1:6231424-6231443 | MS.gene79474:CDS | 40.0% | |
| ATCGAAATCAGTGACAATGG+GGG | - | chr4.1:6228954-6228973 | None:intergenic | 40.0% | |
| ATCTCAAAAACAGCAAAGGC+AGG | + | chr4.1:6230951-6230970 | MS.gene79474:CDS | 40.0% | |
| ATTGAACTTGGTTGGACCAT+TGG | + | chr4.1:6231219-6231238 | MS.gene79474:CDS | 40.0% | |
| CAAGTTAGCAAGCTCATCTT+TGG | + | chr4.1:6230621-6230640 | MS.gene79474:intron | 40.0% | |
| CACAGTAGTGTAAACTGCAT+TGG | - | chr4.1:6231363-6231382 | None:intergenic | 40.0% | |
| CCACATCTCAAAAACAGCAA+AGG | + | chr4.1:6230947-6230966 | MS.gene79474:CDS | 40.0% | |
| GAGACATTAGATGTGTTGTG+TGG | - | chr4.1:6230230-6230249 | None:intergenic | 40.0% | |
| GATCGAAATCAGTGACAATG+GGG | - | chr4.1:6228955-6228974 | None:intergenic | 40.0% | |
| GCAAAAGCCTTCTTGTAAGA+AGG | + | chr4.1:6231600-6231619 | MS.gene79474:CDS | 40.0% | |
| GCACCAATGATAGTAACATC+AGG | - | chr4.1:6229774-6229793 | None:intergenic | 40.0% | |
| GCATATGATGCCTTACCTTT+GGG | - | chr4.1:6229259-6229278 | None:intergenic | 40.0% | |
| GCGGAGCCAAATTAAAGTTT+AGG | + | chr4.1:6230581-6230600 | MS.gene79474:intron | 40.0% | |
| GCTTATGAGTATGCTAAGAG+AGG | + | chr4.1:6229672-6229691 | MS.gene79474:CDS | 40.0% | |
| GGATCGAAATCAGTGACAAT+GGG | - | chr4.1:6228956-6228975 | None:intergenic | 40.0% | |
| TAGTCTGCAATGCATTCCAT+TGG | + | chr4.1:6231423-6231442 | MS.gene79474:CDS | 40.0% | |
| TCCCCTGATGTTACTATCAT+TGG | + | chr4.1:6229768-6229787 | MS.gene79474:CDS | 40.0% | |
| TGCATATGATGCCTTACCTT+TGG | - | chr4.1:6229260-6229279 | None:intergenic | 40.0% | |
| TGTATGTGACAAACCCTTCA+TGG | + | chr4.1:6231500-6231519 | MS.gene79474:CDS | 40.0% | |
| TGTGACGATTGTAATGCCAA+TGG | - | chr4.1:6231238-6231257 | None:intergenic | 40.0% | |
| ! | ACATAGTAAAAAGTGCGTGC+AGG | + | chr4.1:6231470-6231489 | MS.gene79474:CDS | 40.0% |
| ! | ATAGTAAAAAGTGCGTGCAG+GGG | + | chr4.1:6231472-6231491 | MS.gene79474:CDS | 40.0% |
| ! | ATTGAAGGCATATGAAGACG+AGG | + | chr4.1:6231284-6231303 | MS.gene79474:CDS | 40.0% |
| ! | CATAGTAAAAAGTGCGTGCA+GGG | + | chr4.1:6231471-6231490 | MS.gene79474:CDS | 40.0% |
| ! | CATTCATTTGCTGATCCCAA+TGG | - | chr4.1:6231442-6231461 | None:intergenic | 40.0% |
| ! | TCAGGATAAAGCACCTGAAA+AGG | - | chr4.1:6231541-6231560 | None:intergenic | 40.0% |
| ! | TTTATCCTGAGTTAGTGGAC+TGG | + | chr4.1:6231551-6231570 | MS.gene79474:CDS | 40.0% |
| !! | ACTTTAATTTGGCTCCGCAT+TGG | - | chr4.1:6230579-6230598 | None:intergenic | 40.0% |
| !! | AGTGTAAACTGCATTGGTTG+AGG | - | chr4.1:6231357-6231376 | None:intergenic | 40.0% |
| !! | CTTTAATTTGGCTCCGCATT+GGG | - | chr4.1:6230578-6230597 | None:intergenic | 40.0% |
| !! | TTATCCTGAGTTAGTGGACT+GGG | + | chr4.1:6231552-6231571 | MS.gene79474:CDS | 40.0% |
| !!! | CCTTTGCTGTTTTTGAGATG+TGG | - | chr4.1:6230950-6230969 | None:intergenic | 40.0% |
| AACGACACATCTTTGGGCTT+TGG | + | chr4.1:6231578-6231597 | MS.gene79474:CDS | 45.0% | |
| AAGGCATATGAAGACGAGGT+CGG | + | chr4.1:6231288-6231307 | MS.gene79474:intron | 45.0% | |
| AATGTGTGGTCCAGATGCAA+TGG | - | chr4.1:6230186-6230205 | None:intergenic | 45.0% | |
| AGGATCATAGTGGTTGCTTC+GGG | + | chr4.1:6230971-6230990 | MS.gene79474:CDS | 45.0% | |
| AGTAACATCAGGGGAACCAA+GGG | - | chr4.1:6229763-6229782 | None:intergenic | 45.0% | |
| AGTATGCTAAGAGAGGAGCA+AGG | + | chr4.1:6229679-6229698 | MS.gene79474:CDS | 45.0% | |
| ATGATGCCTTACCTTTGGGT+CGG | - | chr4.1:6229255-6229274 | None:intergenic | 45.0% | |
| ATTGCCATTGCCATTGCATC+TGG | + | chr4.1:6230203-6230222 | MS.gene79474:intron | 45.0% | |
| CAGGATCATAGTGGTTGCTT+CGG | + | chr4.1:6230970-6230989 | MS.gene79474:CDS | 45.0% | |
| CATTGGTGCAGATGTTTCCA+AGG | + | chr4.1:6229785-6229804 | MS.gene79474:CDS | 45.0% | |
| CCAAGGTTGAAGACAGTAAG+CGG | + | chr4.1:6229802-6229821 | MS.gene79474:CDS | 45.0% | |
| CTTTGGACGATGTATGTGAC+TGG | + | chr4.1:6229848-6229867 | MS.gene79474:intron | 45.0% | |
| GGGATCGAAATCAGTGACAA+TGG | - | chr4.1:6228957-6228976 | None:intergenic | 45.0% | |
| GGTGCTTTATCCTGAGTTAG+TGG | + | chr4.1:6231546-6231565 | MS.gene79474:CDS | 45.0% | |
| GTTTCATGCAGTGGATCATC+TGG | + | chr4.1:6229955-6229974 | MS.gene79474:intron | 45.0% | |
| TAGTAACATCAGGGGAACCA+AGG | - | chr4.1:6229764-6229783 | None:intergenic | 45.0% | |
| TCTTGTAGCAGTGGCTGATA+TGG | + | chr4.1:6229731-6229750 | MS.gene79474:CDS | 45.0% | |
| ! | AATTTCTGGGGAGCAGTTCA+TGG | + | chr4.1:6230908-6230927 | MS.gene79474:CDS | 45.0% |
| ! | CAATAGTTGGTTCCGTTGCA+GGG | + | chr4.1:6229229-6229248 | MS.gene79474:intron | 45.0% |
| AGCTCGCCCTTCTTACAAGA+AGG | - | chr4.1:6231610-6231629 | None:intergenic | 50.0% | |
| CAGCAAAGGCAGGATCATAG+TGG | + | chr4.1:6230961-6230980 | MS.gene79474:CDS | 50.0% | |
| CCGCTTACTGTCTTCAACCT+TGG | - | chr4.1:6229805-6229824 | None:intergenic | 50.0% | |
| GCAATGGCAATGGCAATGTG+TGG | - | chr4.1:6230200-6230219 | None:intergenic | 50.0% | |
| GCTGATATGGCAACATCCCT+TGG | + | chr4.1:6229744-6229763 | MS.gene79474:CDS | 50.0% | |
| GGCATTACAATCGTCACACC+TGG | + | chr4.1:6231240-6231259 | MS.gene79474:CDS | 50.0% | |
| GGGCAGAACGACACATCTTT+GGG | + | chr4.1:6231572-6231591 | MS.gene79474:CDS | 50.0% | |
| GTTGTGTGGTCCAGATGCAA+TGG | - | chr4.1:6230216-6230235 | None:intergenic | 50.0% | |
| TGAAGACGAGGTCGGTCAAT+TGG | + | chr4.1:6231296-6231315 | MS.gene79474:intron | 50.0% | |
| TGGGCAGAACGACACATCTT+TGG | + | chr4.1:6231571-6231590 | MS.gene79474:CDS | 50.0% | |
| TGGTCCAGATGCAATGGCAA+TGG | - | chr4.1:6230210-6230229 | None:intergenic | 50.0% | |
| ! | ATTCTAGAGGGGTGGCACTT+TGG | + | chr4.1:6230141-6230160 | MS.gene79474:intron | 50.0% |
| ! | CCATACACATTCTAGAGGGG+TGG | + | chr4.1:6230133-6230152 | MS.gene79474:intron | 50.0% |
| ! | CGATGTATGTGACTGGCTGT+TGG | + | chr4.1:6229855-6229874 | MS.gene79474:intron | 50.0% |
| ! | CTTGGTGCACACAGAAAGCA+TGG | + | chr4.1:6229028-6229047 | MS.gene79474:CDS | 50.0% |
| ! | GCAATAGTTGGTTCCGTTGC+AGG | + | chr4.1:6229228-6229247 | MS.gene79474:intron | 50.0% |
| !! | ATAGTGGTTGCTTCGGGTTG+TGG | + | chr4.1:6230977-6230996 | MS.gene79474:CDS | 50.0% |
| !! | CCACCCCTCTAGAATGTGTA+TGG | - | chr4.1:6230136-6230155 | None:intergenic | 50.0% |
| GAGTACCTCGCCAATTCCTG+AGG | - | chr4.1:6229084-6229103 | None:intergenic | 55.0% | |
| GTGGTCCAGATGCAATGGCA+CGG | - | chr4.1:6230181-6230200 | None:intergenic | 55.0% | |
| TCTGCCCAGTCCACTAACTC+AGG | - | chr4.1:6231559-6231578 | None:intergenic | 55.0% | |
| ! | TGTCACCGTGCCATTGCATC+TGG | + | chr4.1:6230173-6230192 | MS.gene79474:intron | 55.0% |
| !! | TGGTTGCTTCGGGTTGTGGA+TGG | + | chr4.1:6230981-6231000 | MS.gene79474:CDS | 55.0% |
| ACTGGGGCAGCCTCAGGAAT+TGG | + | chr4.1:6229071-6229090 | MS.gene79474:CDS | 60.0% | |
| CTAATCACTGGGGCAGCCTC+AGG | + | chr4.1:6229065-6229084 | MS.gene79474:CDS | 60.0% | |
| CCTTTGGGTCGGCCCTGCAA+CGG | - | chr4.1:6229244-6229263 | None:intergenic | 65.0% | |
| GCAGGGCCGACCCAAAGGTA+AGG | + | chr4.1:6229246-6229265 | MS.gene79474:intron | 65.0% | |
| GGCAGCCTCAGGAATTGGCG+AGG | + | chr4.1:6229076-6229095 | MS.gene79474:CDS | 65.0% | |
| CCGTTGCAGGGCCGACCCAA+AGG | + | chr4.1:6229241-6229260 | MS.gene79474:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 6228915 | 6231669 | 6228915 | ID=MS.gene79474 |
| chr4.1 | mRNA | 6228915 | 6231669 | 6228915 | ID=MS.gene79474.t1;Parent=MS.gene79474 |
| chr4.1 | exon | 6228915 | 6229097 | 6228915 | ID=MS.gene79474.t1.exon1;Parent=MS.gene79474.t1 |
| chr4.1 | CDS | 6228915 | 6229097 | 6228915 | ID=cds.MS.gene79474.t1;Parent=MS.gene79474.t1 |
| chr4.1 | exon | 6229666 | 6229858 | 6229666 | ID=MS.gene79474.t1.exon2;Parent=MS.gene79474.t1 |
| chr4.1 | CDS | 6229666 | 6229858 | 6229666 | ID=cds.MS.gene79474.t1;Parent=MS.gene79474.t1 |
| chr4.1 | exon | 6229966 | 6230054 | 6229966 | ID=MS.gene79474.t1.exon3;Parent=MS.gene79474.t1 |
| chr4.1 | CDS | 6229966 | 6230054 | 6229966 | ID=cds.MS.gene79474.t1;Parent=MS.gene79474.t1 |
| chr4.1 | exon | 6230902 | 6231033 | 6230902 | ID=MS.gene79474.t1.exon4;Parent=MS.gene79474.t1 |
| chr4.1 | CDS | 6230902 | 6231033 | 6230902 | ID=cds.MS.gene79474.t1;Parent=MS.gene79474.t1 |
| chr4.1 | exon | 6231177 | 6231305 | 6231177 | ID=MS.gene79474.t1.exon5;Parent=MS.gene79474.t1 |
| chr4.1 | CDS | 6231177 | 6231305 | 6231177 | ID=cds.MS.gene79474.t1;Parent=MS.gene79474.t1 |
| chr4.1 | exon | 6231421 | 6231669 | 6231421 | ID=MS.gene79474.t1.exon6;Parent=MS.gene79474.t1 |
| chr4.1 | CDS | 6231421 | 6231669 | 6231421 | ID=cds.MS.gene79474.t1;Parent=MS.gene79474.t1 |
| Gene Sequence |
| Protein sequence |
