Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052963.t1 | XP_003592350.1 | 98.2 | 334 | 5 | 1 | 3 | 336 | 8 | 340 | 2.10E-184 | 654.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052963.t1 | Q9FLH8 | 79.1 | 316 | 66 | 0 | 15 | 330 | 19 | 334 | 9.1e-144 | 511.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052963.t1 | G7IC32 | 98.2 | 334 | 5 | 1 | 3 | 336 | 8 | 340 | 1.5e-184 | 654.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene052963 | MS.gene98726 | PPI |
| MS.gene052963 | MS.gene46881 | PPI |
| MS.gene85276 | MS.gene052963 | PPI |
| MS.gene052963 | MS.gene003877 | PPI |
| MS.gene052963 | MS.gene056386 | PPI |
| MS.gene032177 | MS.gene052963 | PPI |
| MS.gene052963 | MS.gene28335 | PPI |
| MS.gene052963 | MS.gene052011 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052963.t1 | MTR_1g101950 | 98.204 | 334 | 5 | 1 | 3 | 336 | 8 | 340 | 0.0 | 662 |
| MS.gene052963.t1 | MTR_6g089480 | 88.636 | 308 | 35 | 0 | 26 | 333 | 1 | 308 | 0.0 | 568 |
| MS.gene052963.t1 | MTR_6g089480 | 88.235 | 272 | 32 | 0 | 26 | 297 | 1 | 272 | 8.02e-180 | 498 |
| MS.gene052963.t1 | MTR_6g089480 | 88.889 | 270 | 30 | 0 | 26 | 295 | 1 | 270 | 1.83e-179 | 497 |
| MS.gene052963.t1 | MTR_5g079460 | 74.540 | 326 | 81 | 2 | 8 | 332 | 55 | 379 | 4.05e-171 | 481 |
| MS.gene052963.t1 | MTR_1g069490 | 71.903 | 331 | 67 | 2 | 6 | 336 | 97 | 401 | 1.08e-160 | 455 |
| MS.gene052963.t1 | MTR_1g069745 | 75.000 | 296 | 62 | 2 | 40 | 335 | 4 | 287 | 4.86e-156 | 439 |
| MS.gene052963.t1 | MTR_2g098950 | 63.692 | 325 | 116 | 1 | 9 | 333 | 4 | 326 | 1.47e-149 | 424 |
| MS.gene052963.t1 | MTR_4g067310 | 65.931 | 317 | 106 | 1 | 17 | 333 | 13 | 327 | 2.02e-149 | 424 |
| MS.gene052963.t1 | MTR_1g076850 | 63.175 | 315 | 114 | 2 | 19 | 333 | 8 | 320 | 1.87e-148 | 421 |
| MS.gene052963.t1 | MTR_1g057810 | 68.693 | 329 | 97 | 3 | 4 | 332 | 238 | 560 | 1.28e-146 | 425 |
| MS.gene052963.t1 | MTR_7g075860 | 63.291 | 316 | 114 | 1 | 19 | 332 | 41 | 356 | 1.52e-143 | 410 |
| MS.gene052963.t1 | MTR_1g105150 | 64.742 | 329 | 96 | 4 | 4 | 332 | 238 | 546 | 6.14e-132 | 387 |
| MS.gene052963.t1 | MTR_1g054730 | 53.939 | 330 | 113 | 5 | 7 | 336 | 100 | 390 | 8.20e-104 | 310 |
| MS.gene052963.t1 | MTR_0046s0180 | 76.190 | 105 | 25 | 0 | 229 | 333 | 5 | 109 | 7.13e-53 | 170 |
| MS.gene052963.t1 | MTR_5g044990 | 30.233 | 344 | 203 | 5 | 19 | 328 | 210 | 550 | 2.42e-49 | 174 |
| MS.gene052963.t1 | MTR_4g019165 | 31.461 | 356 | 199 | 6 | 19 | 329 | 93 | 448 | 1.40e-46 | 164 |
| MS.gene052963.t1 | MTR_0046s0210 | 53.623 | 69 | 25 | 2 | 6 | 73 | 91 | 153 | 7.38e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052963.t1 | AT5G51830 | 78.370 | 319 | 69 | 0 | 12 | 330 | 16 | 334 | 0.0 | 523 |
| MS.gene052963.t1 | AT5G51830 | 78.370 | 319 | 69 | 0 | 12 | 330 | 16 | 334 | 0.0 | 523 |
| MS.gene052963.t1 | AT1G66430 | 73.502 | 317 | 83 | 1 | 14 | 330 | 60 | 375 | 6.02e-172 | 483 |
| MS.gene052963.t1 | AT2G31390 | 64.087 | 323 | 114 | 2 | 14 | 336 | 4 | 324 | 6.20e-148 | 420 |
| MS.gene052963.t1 | AT1G06030 | 63.323 | 319 | 115 | 2 | 15 | 333 | 7 | 323 | 3.39e-146 | 416 |
| MS.gene052963.t1 | AT4G10260 | 65.260 | 308 | 105 | 2 | 19 | 326 | 6 | 311 | 4.50e-146 | 415 |
| MS.gene052963.t1 | AT3G59480 | 63.043 | 322 | 113 | 3 | 9 | 330 | 4 | 319 | 2.87e-145 | 413 |
| MS.gene052963.t1 | AT1G06020 | 62.658 | 316 | 116 | 1 | 18 | 333 | 9 | 322 | 1.09e-143 | 410 |
| MS.gene052963.t1 | AT3G54090 | 33.333 | 357 | 192 | 8 | 19 | 330 | 103 | 458 | 1.24e-52 | 180 |
| MS.gene052963.t1 | AT1G69200 | 31.402 | 328 | 191 | 7 | 19 | 313 | 206 | 532 | 1.45e-47 | 169 |
| MS.gene052963.t1 | AT1G50390 | 49.412 | 170 | 55 | 1 | 164 | 333 | 1 | 139 | 3.66e-47 | 156 |
Find 75 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCAAAATATAGCGCTTTC+TGG | 0.165360 | 1.3:+70067784 | None:intergenic |
| CAATTAGAAGTTTGAGATTA+GGG | 0.257397 | 1.3:+70068336 | None:intergenic |
| TAGGTTGGATCAGATGAATT+TGG | 0.297120 | 1.3:-70069038 | MS.gene052963:CDS |
| CAGGCTAAAATATTTCATTA+TGG | 0.300004 | 1.3:-70068736 | MS.gene052963:CDS |
| AACAAAAGCCAATGCGGTTC+TGG | 0.313707 | 1.3:+70068947 | None:intergenic |
| TCCTAGTGCTGATATGCTTC+TGG | 0.318385 | 1.3:-70068880 | MS.gene052963:CDS |
| CGAATTTGAGATTGGCACTA+TGG | 0.327098 | 1.3:-70068621 | MS.gene052963:CDS |
| AGGTTGGATCAGATGAATTT+GGG | 0.335559 | 1.3:-70069037 | MS.gene052963:CDS |
| ACAATTAGAAGTTTGAGATT+AGG | 0.347106 | 1.3:+70068335 | None:intergenic |
| GCAGTTGGCATCTCTAGGTT+GGG | 0.352397 | 1.3:-70069696 | MS.gene052963:CDS |
| AGTGGACTGGTTGTTTGTTT+TGG | 0.362156 | 1.3:-70069816 | MS.gene052963:CDS |
| GCATATCAGCACTAGGATTT+CGG | 0.363456 | 1.3:+70068886 | None:intergenic |
| CAAAATAACGTTGATACATC+TGG | 0.394700 | 1.3:-70068990 | MS.gene052963:CDS |
| GTACCTTCTCAATGAGGTTA+TGG | 0.400762 | 1.3:+70068841 | None:intergenic |
| GGCAGTTGGCATCTCTAGGT+TGG | 0.406307 | 1.3:-70069697 | MS.gene052963:CDS |
| ATGCCAACTGCCACGTTAGC+GGG | 0.409326 | 1.3:+70069708 | None:intergenic |
| CATAGTGCCAATCTCAAATT+CGG | 0.415637 | 1.3:+70068622 | None:intergenic |
| GGACTGGTATAATGAGCATA+TGG | 0.418638 | 1.3:-70068579 | MS.gene052963:CDS |
| CAGTTGGCATCTCTAGGTTG+GGG | 0.424281 | 1.3:-70069695 | MS.gene052963:CDS |
| CCAGCACCAGTTGTGTCAAC+AGG | 0.432600 | 1.3:+70067968 | None:intergenic |
| TCGTTGTACTCTCCGTTTGT+GGG | 0.433338 | 1.3:+70069843 | None:intergenic |
| TGAATTACCTCGAAAATACT+TGG | 0.438736 | 1.3:+70067902 | None:intergenic |
| GTATGATCCGAATTTGAGAT+TGG | 0.448557 | 1.3:-70068629 | MS.gene052963:CDS |
| TTCGTTGTACTCTCCGTTTG+TGG | 0.456495 | 1.3:+70069842 | None:intergenic |
| CTGGAGATGCATTTGTTAGT+GGG | 0.456951 | 1.3:-70067949 | MS.gene052963:CDS |
| TTTCTTGAAAGCAGGTGCTT+CGG | 0.458667 | 1.3:+70069746 | None:intergenic |
| CCTGTTGACACAACTGGTGC+TGG | 0.471362 | 1.3:-70067968 | MS.gene052963:CDS |
| GGATCTAGCCGATGTCATAA+AGG | 0.488434 | 1.3:-70068557 | MS.gene052963:intron |
| GGCCATCAGCTGAGGCTGCT+CGG | 0.491094 | 1.3:-70068600 | MS.gene052963:CDS |
| AAACTTCTAATTGTTACTGA+AGG | 0.493747 | 1.3:-70068326 | MS.gene052963:CDS |
| TCAGCTGAGGCTGCTCGGAC+TGG | 0.496871 | 1.3:-70068595 | MS.gene052963:CDS |
| GCTGGAGATGCATTTGTTAG+TGG | 0.500302 | 1.3:-70067950 | MS.gene052963:CDS |
| GTCCGAGCAGCCTCAGCTGA+TGG | 0.500567 | 1.3:+70068598 | None:intergenic |
| GTTAAACCTGTTGACACAAC+TGG | 0.501040 | 1.3:-70067974 | MS.gene052963:CDS |
| AATACAACATCATCATCATA+AGG | 0.505738 | 1.3:+70068374 | None:intergenic |
| AAAATTTACCTTTATGACAT+CGG | 0.508019 | 1.3:+70068549 | None:intergenic |
| CCAGGAGCTTTCTTGAAAGC+AGG | 0.513992 | 1.3:+70069738 | None:intergenic |
| TTCTGATGCCAGAACCGCAT+TGG | 0.514230 | 1.3:-70068955 | MS.gene052963:CDS |
| GCAAGATGAGCTGACTTGCA+TGG | 0.522605 | 1.3:+70068691 | None:intergenic |
| CCTGCTTTCAAGAAAGCTCC+TGG | 0.530029 | 1.3:-70069738 | MS.gene052963:CDS |
| AGTTGGCATCTCTAGGTTGG+GGG | 0.540601 | 1.3:-70069694 | MS.gene052963:CDS |
| TTTGTTACACTTAGAGCGGA+TGG | 0.540706 | 1.3:-70068930 | MS.gene052963:CDS |
| GACTGGTATAATGAGCATAT+GGG | 0.540901 | 1.3:-70068578 | MS.gene052963:CDS |
| GCGATCACCGTGACAGAGAG+AGG | 0.544506 | 1.3:-70067750 | MS.gene052963:CDS |
| TTCATCTGCATTTCTAGGCA+AGG | 0.544541 | 1.3:-70069670 | MS.gene052963:intron |
| TGGCTCATCAATCAAACTGA+TGG | 0.547967 | 1.3:+70068711 | None:intergenic |
| ACGTTAGCGGGAGCACCACC+AGG | 0.555033 | 1.3:+70069720 | None:intergenic |
| ACGTGGCAGTTGGCATCTCT+AGG | 0.559314 | 1.3:-70069701 | MS.gene052963:CDS |
| TTCAAGGTACCTTCTCAATG+AGG | 0.559443 | 1.3:+70068835 | None:intergenic |
| AACTTCTAATTGTTACTGAA+GGG | 0.559879 | 1.3:-70068325 | MS.gene052963:CDS |
| GCTCCCGCTAACGTGGCAGT+TGG | 0.563123 | 1.3:-70069711 | MS.gene052963:CDS |
| TTTATTGCAGATCAGTGAAG+AGG | 0.565517 | 1.3:-70068426 | MS.gene052963:intron |
| TACCTCGAAAATACTTGGGT+CGG | 0.566049 | 1.3:+70067907 | None:intergenic |
| AAATCTGATGATCCCACAAA+CGG | 0.569926 | 1.3:-70069855 | MS.gene052963:CDS |
| CATGTGAAGGTCATCATGGT+TGG | 0.573865 | 1.3:-70070108 | None:intergenic |
| TGGTGGTGCTCCCGCTAACG+TGG | 0.574825 | 1.3:-70069718 | MS.gene052963:CDS |
| AGATGAATTTGGGTATATGT+TGG | 0.576116 | 1.3:-70069027 | MS.gene052963:CDS |
| CGATCACCGTGACAGAGAGA+GGG | 0.577682 | 1.3:-70067749 | MS.gene052963:CDS |
| GATGCCAACTGCCACGTTAG+CGG | 0.581644 | 1.3:+70069707 | None:intergenic |
| AATTGTTACTGAAGGGTCAG+AGG | 0.586261 | 1.3:-70068318 | MS.gene052963:CDS |
| AATTGCCCCTCTCTCTGTCA+CGG | 0.587278 | 1.3:+70067743 | None:intergenic |
| ATTGTTACTGAAGGGTCAGA+GGG | 0.587459 | 1.3:-70068317 | MS.gene052963:CDS |
| GGCACTATGGCCATCAGCTG+AGG | 0.597442 | 1.3:-70068608 | MS.gene052963:CDS |
| AGAGTCTTTAGCAATTCTCA+AGG | 0.603061 | 1.3:+70068666 | None:intergenic |
| GAATTACCTCGAAAATACTT+GGG | 0.606713 | 1.3:+70067903 | None:intergenic |
| GTACAACGAAACAAGTGGAC+TGG | 0.613455 | 1.3:-70069829 | MS.gene052963:CDS |
| GGAGAGTACAACGAAACAAG+TGG | 0.626054 | 1.3:-70069834 | MS.gene052963:CDS |
| TGACCATAACCTCATTGAGA+AGG | 0.632570 | 1.3:-70068844 | MS.gene052963:intron |
| TCCAGAAGCATATCAGCACT+AGG | 0.651647 | 1.3:+70068879 | None:intergenic |
| AGAGACACTCCACCCACTGT+AGG | 0.656519 | 1.3:+70069771 | None:intergenic |
| GTTGGCATCTCTAGGTTGGG+GGG | 0.661012 | 1.3:-70069693 | MS.gene052963:CDS |
| GCTTTCAAGAAAGCTCCTGG+TGG | 0.692356 | 1.3:-70069735 | MS.gene052963:CDS |
| ACGTTGATACATCTGGCATG+CGG | 0.696496 | 1.3:-70068983 | MS.gene052963:CDS |
| GATCACCGTGACAGAGAGAG+GGG | 0.699187 | 1.3:-70067748 | MS.gene052963:CDS |
| AAGTGTAACAAAAGCCAATG+CGG | 0.715154 | 1.3:+70068941 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAAAGTTTAAAAAAAAAAT+AGG | + | chr1.3:70067863-70067882 | None:intergenic | 10.0% |
| !! | TATATCTATGTCTATTTATT+AGG | - | chr1.3:70068143-70068162 | MS.gene052963:intron | 15.0% |
| !!! | TTCTTTTATTTCATACTAAT+TGG | - | chr1.3:70067799-70067818 | MS.gene052963:CDS | 15.0% |
| !! | AAAATTTACCTTTATGACAT+CGG | + | chr1.3:70069242-70069261 | None:intergenic | 20.0% |
| !! | AAATCTGAGTTAAATAACTT+TGG | + | chr1.3:70069525-70069544 | None:intergenic | 20.0% |
| !! | AATAAAAGAATCATTTCACA+TGG | + | chr1.3:70067789-70067808 | None:intergenic | 20.0% |
| !! | ATAAAAGAATCATTTCACAT+GGG | + | chr1.3:70067788-70067807 | None:intergenic | 20.0% |
| !! | ATATTTGAACAAATCAAACA+TGG | + | chr1.3:70068197-70068216 | None:intergenic | 20.0% |
| !! | TAACTCAACAATAAAAAAAG+AGG | + | chr1.3:70068542-70068561 | None:intergenic | 20.0% |
| !! | TTAGGAATATGAATCAATAT+TGG | - | chr1.3:70068688-70068707 | MS.gene052963:CDS | 20.0% |
| !!! | CTGAATGATTGTTTTAAAAA+AGG | - | chr1.3:70068279-70068298 | MS.gene052963:intron | 20.0% |
| !!! | TTTTGAATTCAACTATAACA+TGG | + | chr1.3:70067715-70067734 | None:intergenic | 20.0% |
| ! | AAACTTCTAATTGTTACTGA+AGG | - | chr1.3:70069462-70069481 | MS.gene052963:intron | 25.0% |
| ! | AAAGATAATCCTCAAAATGA+AGG | + | chr1.3:70068425-70068444 | None:intergenic | 25.0% |
| ! | AACTTCTAATTGTTACTGAA+GGG | - | chr1.3:70069463-70069482 | MS.gene052963:intron | 25.0% |
| ! | AATACAACATCATCATCATA+AGG | + | chr1.3:70069417-70069436 | None:intergenic | 25.0% |
| ! | AGAAAAAAGTTATGAACGTT+CGG | - | chr1.3:70069939-70069958 | MS.gene052963:intron | 25.0% |
| ! | ATCTATGTCTATTTATTAGG+TGG | - | chr1.3:70068146-70068165 | MS.gene052963:intron | 25.0% |
| ! | ATTATACAGACTTAAACCAA+AGG | + | chr1.3:70069014-70069033 | None:intergenic | 25.0% |
| ! | ATTTCATACTAATTGGCATA+AGG | - | chr1.3:70067806-70067825 | MS.gene052963:intron | 25.0% |
| ! | CAAAGAAAATAATGCAATGA+GGG | + | chr1.3:70069573-70069592 | None:intergenic | 25.0% |
| ! | CAATACAGATTTCTTAACTA+TGG | + | chr1.3:70068220-70068239 | None:intergenic | 25.0% |
| ! | CAGGCTAAAATATTTCATTA+TGG | - | chr1.3:70069052-70069071 | MS.gene052963:intron | 25.0% |
| ! | CTGTATTGTTATAGACTTAT+AGG | - | chr1.3:70068232-70068251 | MS.gene052963:intron | 25.0% |
| ! | TAAGAAAATAACACTTCAGA+TGG | + | chr1.3:70069342-70069361 | None:intergenic | 25.0% |
| ! | TACAAGTACATGATATTTCT+AGG | + | chr1.3:70068584-70068603 | None:intergenic | 25.0% |
| ! | TACATGTACTTTATGAAGTT+TGG | - | chr1.3:70067735-70067754 | MS.gene052963:CDS | 25.0% |
| ! | TTAGGAATATGAATCTATGT+TGG | - | chr1.3:70068648-70068667 | MS.gene052963:CDS | 25.0% |
| !! | ACAATTAGAAGTTTGAGATT+AGG | + | chr1.3:70069456-70069475 | None:intergenic | 25.0% |
| !! | CAATTAGAAGTTTGAGATTA+GGG | + | chr1.3:70069455-70069474 | None:intergenic | 25.0% |
| !! | CTATATTTTGCAAATGTATG+TGG | - | chr1.3:70070014-70070033 | MS.gene052963:intron | 25.0% |
| !! | GAAAAAAGAATGACTTGTAA+TGG | + | chr1.3:70069308-70069327 | None:intergenic | 25.0% |
| !!! | AGTCATTCTTTTTTCTTTCT+CGG | - | chr1.3:70069313-70069332 | MS.gene052963:intron | 25.0% |
| !!! | TTATTTTATGTTGCAGAATG+AGG | - | chr1.3:70069974-70069993 | MS.gene052963:intron | 25.0% |
| !!! | TTTTAACTTAAACTGATTGC+AGG | - | chr1.3:70069033-70069052 | MS.gene052963:CDS | 25.0% |
| AAAGAGGAAAAAAGTAGAAC+AGG | + | chr1.3:70068526-70068545 | None:intergenic | 30.0% | |
| AAGAGGAAAAAAGTAGAACA+GGG | + | chr1.3:70068525-70068544 | None:intergenic | 30.0% | |
| AATGGGATTTATAGTTGGTT+AGG | + | chr1.3:70068498-70068517 | None:intergenic | 30.0% | |
| AATTCCCTAAAAAATGAGCT+TGG | - | chr1.3:70068368-70068387 | MS.gene052963:CDS | 30.0% | |
| ACTTAAACCAAAGGTCTTTA+TGG | + | chr1.3:70069005-70069024 | None:intergenic | 30.0% | |
| ACTTTATGAAGTTTGGCTAT+TGG | - | chr1.3:70067742-70067761 | MS.gene052963:CDS | 30.0% | |
| AGATGAATTTGGGTATATGT+TGG | - | chr1.3:70068761-70068780 | MS.gene052963:intron | 30.0% | |
| ATTCCCTAAAAAATGAGCTT+GGG | - | chr1.3:70068369-70068388 | MS.gene052963:CDS | 30.0% | |
| CAAAATAACGTTGATACATC+TGG | - | chr1.3:70068798-70068817 | MS.gene052963:intron | 30.0% | |
| CCATCTCTGTTTATAAAATG+TGG | - | chr1.3:70068979-70068998 | MS.gene052963:CDS | 30.0% | |
| GAATGTAACATTGTCATGTT+TGG | - | chr1.3:70068391-70068410 | MS.gene052963:CDS | 30.0% | |
| GAATTACCTCGAAAATACTT+GGG | + | chr1.3:70069888-70069907 | None:intergenic | 30.0% | |
| GCAAAGAAAATAATGCAATG+AGG | + | chr1.3:70069574-70069593 | None:intergenic | 30.0% | |
| TAAACAGAGATGGAAATTCA+AGG | + | chr1.3:70068972-70068991 | None:intergenic | 30.0% | |
| TGAATTACCTCGAAAATACT+TGG | + | chr1.3:70069889-70069908 | None:intergenic | 30.0% | |
| TTGAACAAATCAAACATGGA+AGG | + | chr1.3:70068193-70068212 | None:intergenic | 30.0% | |
| ! | AATTTGTGTGCAGGATTTTA+AGG | - | chr1.3:70069771-70069790 | MS.gene052963:CDS | 30.0% |
| ! | ATTTGTGTGCAGGATTTTAA+GGG | - | chr1.3:70069772-70069791 | MS.gene052963:CDS | 30.0% |
| ! | CCACATTTTATAAACAGAGA+TGG | + | chr1.3:70068982-70069001 | None:intergenic | 30.0% |
| ! | GCTGAGAAATTCTGAATTTT+AGG | - | chr1.3:70068670-70068689 | MS.gene052963:CDS | 30.0% |
| ! | GTAGCAGTATACTCAATTTT+AGG | - | chr1.3:70068630-70068649 | MS.gene052963:CDS | 30.0% |
| ! | GTTAAAGTTCCTTCATTTTG+AGG | - | chr1.3:70068413-70068432 | MS.gene052963:CDS | 30.0% |
| ! | TCGTCTATTTTCTATTCTCA+TGG | - | chr1.3:70068453-70068472 | MS.gene052963:intron | 30.0% |
| ! | TGTGGGTTAAGAAAATTTAC+TGG | + | chr1.3:70067896-70067915 | None:intergenic | 30.0% |
| !! | CTACAAGAAGTATTATTCCT+AGG | + | chr1.3:70068614-70068633 | None:intergenic | 30.0% |
| !!! | ATTCCCAAGCTCATTTTTTA+GGG | + | chr1.3:70068375-70068394 | None:intergenic | 30.0% |
| !!! | CAGATTTTAATTGTCTGAAG+AGG | - | chr1.3:70069538-70069557 | MS.gene052963:intron | 30.0% |
| AAATCTGATGATCCCACAAA+CGG | - | chr1.3:70067933-70067952 | MS.gene052963:CDS | 35.0% | |
| AACCTAAAACACAGATGGTA+AGG | + | chr1.3:70068736-70068755 | None:intergenic | 35.0% | |
| AAGTGTAACAAAAGCCAATG+CGG | + | chr1.3:70068850-70068869 | None:intergenic | 35.0% | |
| AGAGTCTTTAGCAATTCTCA+AGG | + | chr1.3:70069125-70069144 | None:intergenic | 35.0% | |
| AGGTTGGATCAGATGAATTT+GGG | - | chr1.3:70068751-70068770 | MS.gene052963:intron | 35.0% | |
| CATAGTGCCAATCTCAAATT+CGG | + | chr1.3:70069169-70069188 | None:intergenic | 35.0% | |
| GACTGGTATAATGAGCATAT+GGG | - | chr1.3:70069210-70069229 | MS.gene052963:intron | 35.0% | |
| GTGGAAATGGGATTTATAGT+TGG | + | chr1.3:70068503-70068522 | None:intergenic | 35.0% | |
| TAACTTTGGCAAGCTTACTT+TGG | + | chr1.3:70069511-70069530 | None:intergenic | 35.0% | |
| TGATCACTAAATTTGTGTGC+AGG | - | chr1.3:70069762-70069781 | MS.gene052963:CDS | 35.0% | |
| TGTACTTGTAGATTGTACCT+AGG | - | chr1.3:70068594-70068613 | MS.gene052963:CDS | 35.0% | |
| TTGCAAAATATAGCGCTTTC+TGG | + | chr1.3:70070007-70070026 | None:intergenic | 35.0% | |
| TTGCTCTTTATTCTGATGTG+TGG | - | chr1.3:70069590-70069609 | MS.gene052963:intron | 35.0% | |
| TTTATTGCAGATCAGTGAAG+AGG | - | chr1.3:70069362-70069381 | MS.gene052963:intron | 35.0% | |
| ! | AATAGATTTTGTGCCTACAG+TGG | - | chr1.3:70068004-70068023 | MS.gene052963:CDS | 35.0% |
| ! | ATAGATTTTGTGCCTACAGT+GGG | - | chr1.3:70068005-70068024 | MS.gene052963:CDS | 35.0% |
| ! | ATTGGCATAAGGATGTTTTG+TGG | - | chr1.3:70067817-70067836 | MS.gene052963:intron | 35.0% |
| ! | GTATGATCCGAATTTGAGAT+TGG | - | chr1.3:70069159-70069178 | MS.gene052963:intron | 35.0% |
| ! | TAGGTTGGATCAGATGAATT+TGG | - | chr1.3:70068750-70068769 | MS.gene052963:intron | 35.0% |
| ! | TTCCTTACCATCTGTGTTTT+AGG | - | chr1.3:70068731-70068750 | MS.gene052963:CDS | 35.0% |
| !! | AGTTTGGCTATTGGCTATTT+TGG | - | chr1.3:70067751-70067770 | MS.gene052963:CDS | 35.0% |
| !! | TTACCATCTGTGTTTTAGGT+TGG | - | chr1.3:70068735-70068754 | MS.gene052963:CDS | 35.0% |
| !!! | CATTCCCAAGCTCATTTTTT+AGG | + | chr1.3:70068376-70068395 | None:intergenic | 35.0% |
| !!! | GAGATTACTTTTTTGACTGG+TGG | - | chr1.3:70069384-70069403 | MS.gene052963:intron | 35.0% |
| !!! | GAGGAGATTACTTTTTTGAC+TGG | - | chr1.3:70069381-70069400 | MS.gene052963:intron | 35.0% |
| AAAGTAGAACAGGGTGGAAA+TGG | + | chr1.3:70068516-70068535 | None:intergenic | 40.0% | |
| AAGTAGAACAGGGTGGAAAT+GGG | + | chr1.3:70068515-70068534 | None:intergenic | 40.0% | |
| AATGTGGCCATAAAGACCTT+TGG | - | chr1.3:70068995-70069014 | MS.gene052963:CDS | 40.0% | |
| AATTGTTACTGAAGGGTCAG+AGG | - | chr1.3:70069470-70069489 | MS.gene052963:intron | 40.0% | |
| ACCTGCAAAACACGAATTGT+GGG | + | chr1.3:70067913-70067932 | None:intergenic | 40.0% | |
| AGGAAAAAAGTAGAACAGGG+TGG | + | chr1.3:70068522-70068541 | None:intergenic | 40.0% | |
| ATTGTTACTGAAGGGTCAGA+GGG | - | chr1.3:70069471-70069490 | MS.gene052963:intron | 40.0% | |
| CAGGTTGTAAAACTTGAGCA+AGG | - | chr1.3:70069672-70069691 | MS.gene052963:CDS | 40.0% | |
| GATCACTACTAGTTGAATGC+TGG | + | chr1.3:70069747-70069766 | None:intergenic | 40.0% | |
| GATCCAACCTAAAACACAGA+TGG | + | chr1.3:70068741-70068760 | None:intergenic | 40.0% | |
| GCATATCAGCACTAGGATTT+CGG | + | chr1.3:70068905-70068924 | None:intergenic | 40.0% | |
| GTACCTTCTCAATGAGGTTA+TGG | + | chr1.3:70068950-70068969 | None:intergenic | 40.0% | |
| GTTAAACCTGTTGACACAAC+TGG | - | chr1.3:70069814-70069833 | MS.gene052963:CDS | 40.0% | |
| TACCTCGAAAATACTTGGGT+CGG | + | chr1.3:70069884-70069903 | None:intergenic | 40.0% | |
| TACCTGCAAAACACGAATTG+TGG | + | chr1.3:70067914-70067933 | None:intergenic | 40.0% | |
| TGACCATAACCTCATTGAGA+AGG | - | chr1.3:70068944-70068963 | MS.gene052963:CDS | 40.0% | |
| TGGCTCATCAATCAAACTGA+TGG | + | chr1.3:70069080-70069099 | None:intergenic | 40.0% | |
| TTTCTTGAAAGCAGGTGCTT+CGG | + | chr1.3:70068045-70068064 | None:intergenic | 40.0% | |
| TTTGTTACACTTAGAGCGGA+TGG | - | chr1.3:70068858-70068877 | MS.gene052963:CDS | 40.0% | |
| ! | CGAATTTGAGATTGGCACTA+TGG | - | chr1.3:70069167-70069186 | MS.gene052963:intron | 40.0% |
| ! | CTGGAGATGCATTTGTTAGT+GGG | - | chr1.3:70069839-70069858 | MS.gene052963:CDS | 40.0% |
| ! | GGACTGGTATAATGAGCATA+TGG | - | chr1.3:70069209-70069228 | MS.gene052963:intron | 40.0% |
| ! | GGCTTTTGTTACACTTAGAG+CGG | - | chr1.3:70068854-70068873 | MS.gene052963:CDS | 40.0% |
| ! | TGATGTGTGGACTGAAATGT+TGG | - | chr1.3:70069603-70069622 | MS.gene052963:intron | 40.0% |
| ! | TTCAAGGTACCTTCTCAATG+AGG | + | chr1.3:70068956-70068975 | None:intergenic | 40.0% |
| ! | TTCATCTGCATTTCTAGGCA+AGG | - | chr1.3:70068118-70068137 | MS.gene052963:intron | 40.0% |
| !! | CAGGATTTTAAGGGCAAAGT+TGG | - | chr1.3:70069781-70069800 | MS.gene052963:CDS | 40.0% |
| !! | GATTTTAAGGGCAAAGTTGG+AGG | - | chr1.3:70069784-70069803 | MS.gene052963:CDS | 40.0% |
| !!! | AGTGGACTGGTTGTTTGTTT+TGG | - | chr1.3:70067972-70067991 | MS.gene052963:CDS | 40.0% |
| AACAAAAGCCAATGCGGTTC+TGG | + | chr1.3:70068844-70068863 | None:intergenic | 45.0% | |
| ACGTTGATACATCTGGCATG+CGG | - | chr1.3:70068805-70068824 | MS.gene052963:intron | 45.0% | |
| GGATCTAGCCGATGTCATAA+AGG | - | chr1.3:70069231-70069250 | MS.gene052963:intron | 45.0% | |
| GTACAACGAAACAAGTGGAC+TGG | - | chr1.3:70067959-70067978 | MS.gene052963:CDS | 45.0% | |
| TCGTTGTACTCTCCGTTTGT+GGG | + | chr1.3:70067948-70067967 | None:intergenic | 45.0% | |
| TTCGTTGTACTCTCCGTTTG+TGG | + | chr1.3:70067949-70067968 | None:intergenic | 45.0% | |
| ! | ACCCACAATTCGTGTTTTGC+AGG | - | chr1.3:70067909-70067928 | MS.gene052963:intron | 45.0% |
| ! | GCATCTTTTGTAGGTAGTGC+AGG | + | chr1.3:70070071-70070090 | None:intergenic | 45.0% |
| ! | GCTGGAGATGCATTTGTTAG+TGG | - | chr1.3:70069838-70069857 | MS.gene052963:CDS | 45.0% |
| ! | GGAGAGTACAACGAAACAAG+TGG | - | chr1.3:70067954-70067973 | MS.gene052963:CDS | 45.0% |
| ! | TCCAGAAGCATATCAGCACT+AGG | + | chr1.3:70068912-70068931 | None:intergenic | 45.0% |
| ! | TGCAGGACAGCATCTTTTGT+AGG | + | chr1.3:70070080-70070099 | None:intergenic | 45.0% |
| ! | TTCCGACCCAAGTATTTTCG+AGG | - | chr1.3:70069879-70069898 | MS.gene052963:intron | 45.0% |
| !! | TCCTAGTGCTGATATGCTTC+TGG | - | chr1.3:70068908-70068927 | MS.gene052963:CDS | 45.0% |
| AATTGCCCCTCTCTCTGTCA+CGG | + | chr1.3:70070048-70070067 | None:intergenic | 50.0% | |
| CAGTTGGCATCTCTAGGTTG+GGG | - | chr1.3:70068093-70068112 | MS.gene052963:intron | 50.0% | |
| CCAGGAGCTTTCTTGAAAGC+AGG | + | chr1.3:70068053-70068072 | None:intergenic | 50.0% | |
| CCTGCTTTCAAGAAAGCTCC+TGG | - | chr1.3:70068050-70068069 | MS.gene052963:intron | 50.0% | |
| GATACTCGACGACGAATAGC+AGG | - | chr1.3:70069653-70069672 | MS.gene052963:intron | 50.0% | |
| GCAGTTGGCATCTCTAGGTT+GGG | - | chr1.3:70068092-70068111 | MS.gene052963:intron | 50.0% | |
| GCTTTCAAGAAAGCTCCTGG+TGG | - | chr1.3:70068053-70068072 | MS.gene052963:intron | 50.0% | |
| GGGGGTTCATCTGCATTTCT+AGG | - | chr1.3:70068113-70068132 | MS.gene052963:intron | 50.0% | |
| TTCTGATGCCAGAACCGCAT+TGG | - | chr1.3:70068833-70068852 | MS.gene052963:intron | 50.0% | |
| ! | AGTTGGCATCTCTAGGTTGG+GGG | - | chr1.3:70068094-70068113 | MS.gene052963:intron | 50.0% |
| ! | CTTGAGCAAGGTTTGCTTCG+AGG | - | chr1.3:70069684-70069703 | MS.gene052963:CDS | 50.0% |
| ! | GATTTTGTGCCTACAGTGGG+TGG | - | chr1.3:70068008-70068027 | MS.gene052963:intron | 50.0% |
| !! | GCAAGATGAGCTGACTTGCA+TGG | + | chr1.3:70069100-70069119 | None:intergenic | 50.0% |
| ACGTGGCAGTTGGCATCTCT+AGG | - | chr1.3:70068087-70068106 | MS.gene052963:intron | 55.0% | |
| AGAGACACTCCACCCACTGT+AGG | + | chr1.3:70068020-70068039 | None:intergenic | 55.0% | |
| ATGCCAACTGCCACGTTAGC+GGG | + | chr1.3:70068083-70068102 | None:intergenic | 55.0% | |
| CCAGCACCAGTTGTGTCAAC+AGG | + | chr1.3:70069823-70069842 | None:intergenic | 55.0% | |
| CCTGTTGACACAACTGGTGC+TGG | - | chr1.3:70069820-70069839 | MS.gene052963:CDS | 55.0% | |
| CGATCACCGTGACAGAGAGA+GGG | - | chr1.3:70070039-70070058 | MS.gene052963:intron | 55.0% | |
| GATCACCGTGACAGAGAGAG+GGG | - | chr1.3:70070040-70070059 | MS.gene052963:intron | 55.0% | |
| GATGCCAACTGCCACGTTAG+CGG | + | chr1.3:70068084-70068103 | None:intergenic | 55.0% | |
| GGCAGTTGGCATCTCTAGGT+TGG | - | chr1.3:70068091-70068110 | MS.gene052963:intron | 55.0% | |
| ! | GTTGGCATCTCTAGGTTGGG+GGG | - | chr1.3:70068095-70068114 | MS.gene052963:intron | 55.0% |
| GCGATCACCGTGACAGAGAG+AGG | - | chr1.3:70070038-70070057 | MS.gene052963:intron | 60.0% | |
| GGCACTATGGCCATCAGCTG+AGG | - | chr1.3:70069180-70069199 | MS.gene052963:intron | 60.0% | |
| GCTCCCGCTAACGTGGCAGT+TGG | - | chr1.3:70068077-70068096 | MS.gene052963:intron | 65.0% | |
| GGCCATCAGCTGAGGCTGCT+CGG | - | chr1.3:70069188-70069207 | MS.gene052963:intron | 65.0% | |
| GTCCGAGCAGCCTCAGCTGA+TGG | + | chr1.3:70069193-70069212 | None:intergenic | 65.0% | |
| TCAGCTGAGGCTGCTCGGAC+TGG | - | chr1.3:70069193-70069212 | MS.gene052963:intron | 65.0% | |
| ! | TGGTGGTGCTCCCGCTAACG+TGG | - | chr1.3:70068070-70068089 | MS.gene052963:intron | 65.0% |
| !! | ACGTTAGCGGGAGCACCACC+AGG | + | chr1.3:70068071-70068090 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 70067695 | 70070115 | 70067695 | ID=MS.gene052963 |
| chr1.3 | mRNA | 70067695 | 70070115 | 70067695 | ID=MS.gene052963.t1;Parent=MS.gene052963 |
| chr1.3 | exon | 70070109 | 70070115 | 70070109 | ID=MS.gene052963.t1.exon1;Parent=MS.gene052963.t1 |
| chr1.3 | CDS | 70070109 | 70070115 | 70070109 | ID=cds.MS.gene052963.t1;Parent=MS.gene052963.t1 |
| chr1.3 | exon | 70069671 | 70069879 | 70069671 | ID=MS.gene052963.t1.exon2;Parent=MS.gene052963.t1 |
| chr1.3 | CDS | 70069671 | 70069879 | 70069671 | ID=cds.MS.gene052963.t1;Parent=MS.gene052963.t1 |
| chr1.3 | exon | 70068845 | 70069057 | 70068845 | ID=MS.gene052963.t1.exon3;Parent=MS.gene052963.t1 |
| chr1.3 | CDS | 70068845 | 70069057 | 70068845 | ID=cds.MS.gene052963.t1;Parent=MS.gene052963.t1 |
| chr1.3 | exon | 70068558 | 70068755 | 70068558 | ID=MS.gene052963.t1.exon4;Parent=MS.gene052963.t1 |
| chr1.3 | CDS | 70068558 | 70068755 | 70068558 | ID=cds.MS.gene052963.t1;Parent=MS.gene052963.t1 |
| chr1.3 | exon | 70068298 | 70068438 | 70068298 | ID=MS.gene052963.t1.exon5;Parent=MS.gene052963.t1 |
| chr1.3 | CDS | 70068298 | 70068438 | 70068298 | ID=cds.MS.gene052963.t1;Parent=MS.gene052963.t1 |
| chr1.3 | exon | 70067910 | 70068026 | 70067910 | ID=MS.gene052963.t1.exon6;Parent=MS.gene052963.t1 |
| chr1.3 | CDS | 70067910 | 70068026 | 70067910 | ID=cds.MS.gene052963.t1;Parent=MS.gene052963.t1 |
| chr1.3 | exon | 70067695 | 70067820 | 70067695 | ID=MS.gene052963.t1.exon7;Parent=MS.gene052963.t1 |
| chr1.3 | CDS | 70067695 | 70067820 | 70067695 | ID=cds.MS.gene052963.t1;Parent=MS.gene052963.t1 |
| Gene Sequence |
| Protein sequence |
