AlfalfaGEDB | MS.gene69027

M. sativa cultivar XinJiangDaYe / MS.gene69027

KEGG: K02357
GO: GO:0003674 GO:0003676 GO:0003723 GO:0003746 GO:0005488 GO:0005515 GO:0006414 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0034645 GO:0043170 GO:0044237 GO:0044249 GO:0044260 GO:0045182 GO:0071704 GO:0090079 GO:0097159 GO:1901363 GO:1901576
PFAM: PF00575.26 PF00889.22

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene69027.t1	XP_003620654.1	89.4	1097	66	4	1	1090	1	1054	0.00E+00	1657.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene69027.t1	P74070	65.0	200	69	1	886	1084	4	203	3.3e-70	268.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene69027.t1	G7KPU0	89.4	1097	66	4	1	1090	1	1054	0.0e+00	1657.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049150	MS.gene69027	0.846487	2.11E-59	-1.69E-46
MS.gene049151	MS.gene69027	0.849965	2.30E-60	-1.69E-46
MS.gene049153	MS.gene69027	0.852939	3.32E-61	-1.69E-46
MS.gene049260	MS.gene69027	0.826099	3.27E-54	-1.69E-46
MS.gene049297	MS.gene69027	0.806806	6.88E-50	-1.69E-46
MS.gene049351	MS.gene69027	0.868139	8.15E-66	-1.69E-46
MS.gene049356	MS.gene69027	0.819009	1.45E-52	-1.69E-46
MS.gene049389	MS.gene69027	0.838482	2.80E-57	-1.69E-46
MS.gene049491	MS.gene69027	0.836083	1.15E-56	-1.69E-46
MS.gene049599	MS.gene69027	-0.824034	1.00E-53	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene064832	MS.gene69027	PPI
MS.gene52774	MS.gene69027	PPI
MS.gene69027	MS.gene69330	PPI
MS.gene69027	MS.gene014350	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene69027.t1	MTR_6g088270	92.069	1097	37	4	1	1090	1	1054	0.0	1947
MS.gene69027.t1	MTR_6g087270	68.493	292	32	3	1	292	1	232	2.09e-117	362
MS.gene69027.t1	MTR_6g087300	56.136	383	87	5	686	1062	50	357	2.47e-116	363
MS.gene69027.t1	MTR_6g087300	50.838	179	59	1	644	822	209	358	3.17e-46	171
MS.gene69027.t1	MTR_2g039780	76.163	172	25	3	920	1090	60	216	1.16e-72	240
MS.gene69027.t1	MTR_2g039780	56.364	165	56	3	682	845	63	212	1.72e-49	175
MS.gene69027.t1	MTR_6g084360	75.301	166	12	1	917	1082	973	1109	8.41e-66	242
MS.gene69027.t1	MTR_6g084360	52.471	263	75	5	578	839	894	1107	5.28e-58	218
MS.gene69027.t1	MTR_6g027070	75.658	152	18	1	644	795	12	144	1.22e-64	215
MS.gene69027.t1	MTR_6g027070	58.000	150	44	2	886	1035	13	143	1.05e-45	161

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene69027.t1	AT4G29060	51.562	1088	382	26	1	1080	1	951	0.0	873
MS.gene69027.t1	AT4G29060	66.807	238	77	1	851	1086	482	719	1.84e-93	320
MS.gene69027.t1	AT4G29060	41.795	847	345	26	1	839	1	707	2.11e-159	489
MS.gene69027.t1	AT4G29060	69.828	232	62	2	851	1080	482	707	3.78e-95	319
MS.gene69027.t1	AT4G11120	51.613	93	42	2	889	981	76	165	1.42e-16	83.6
MS.gene69027.t1	AT4G11120	43.478	92	51	1	648	739	76	166	4.44e-14	75.9
MS.gene69027.t1	AT4G11120	30.263	152	98	3	698	843	234	383	1.20e-12	71.6

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Find 231 sgRNAs with CRISPR-Local

Find 323 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGCGCAAGCATATCTC+AGG	0.509392	6.2:+86531187	MS.gene69027:CDS
AAACACCGATCCTGCTGTCA+TGG	0.503436	6.2:-86529585	None:intergenic
AAACTATCAGAAACTGACAA+TGG	0.630102	6.2:+86528232	MS.gene69027:CDS
AAACTATCAGAAACTGACAA+TGG	0.630102	6.2:+86528355	MS.gene69027:CDS
AAAGCTCTTGCTGAAACGGA+AGG	0.608476	6.2:+86531156	MS.gene69027:CDS
AAATCAACAAACGCACCAAA+CGG	0.524034	6.2:-86527269	None:intergenic
AAATCCTCATTCTTTACAGG+AGG	0.604341	6.2:-86527203	None:intergenic
AACAGCTCCTTCCTTCTTCA+TGG	0.308813	6.2:-86527768	None:intergenic
AACCGGAGCAAATTAGATCA+AGG	0.527437	6.2:+86529794	MS.gene69027:CDS
AACGGAAGGCGATCTTGAAA+AGG	0.483299	6.2:+86531170	MS.gene69027:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACTATCAGAAACTGACAA+TGG	+	chr6.2:86528232-86528251	MS.gene69027:CDS	30.0%
AAATCATACAGTTACAGCAT+AGG	-	chr6.2:86530853-86530872	None:intergenic	30.0%
AATGGGAAAAACTACATAAG+GGG	-	chr6.2:86530216-86530235	None:intergenic	30.0%
ACAAACTATAAGAGGTTAGA+GGG	+	chr6.2:86530743-86530762	MS.gene69027:intron	30.0%
ACACTGTCATCCTTAATAAA+AGG	-	chr6.2:86531570-86531589	None:intergenic	30.0%
AGGATACTATAGGAAAAGAA+AGG	-	chr6.2:86528875-86528894	None:intergenic	30.0%
AGTAACAACATACTCTACTT+GGG	-	chr6.2:86529704-86529723	None:intergenic	30.0%
ATGCCAAAGTAGATATTTCT+TGG	+	chr6.2:86530253-86530272	MS.gene69027:intron	30.0%
ATTAGAGAGAAAATTGTCGA+GGG	+	chr6.2:86531501-86531520	MS.gene69027:CDS	30.0%
ATTAGATCAAGGATTGTTGA+AGG	+	chr6.2:86529805-86529824	MS.gene69027:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6.2	gene	86526801	86531710	86526801	ID=MS.gene69027
chr6.2	mRNA	86526801	86531710	86526801	ID=MS.gene69027.t1;Parent=MS.gene69027
chr6.2	exon	86526801	86528490	86526801	ID=MS.gene69027.t1.exon1;Parent=MS.gene69027.t1
chr6.2	CDS	86526801	86528490	86526801	ID=cds.MS.gene69027.t1;Parent=MS.gene69027.t1
chr6.2	exon	86528676	86528750	86528676	ID=MS.gene69027.t1.exon2;Parent=MS.gene69027.t1
chr6.2	CDS	86528676	86528750	86528676	ID=cds.MS.gene69027.t1;Parent=MS.gene69027.t1
chr6.2	exon	86528921	86529082	86528921	ID=MS.gene69027.t1.exon3;Parent=MS.gene69027.t1
chr6.2	CDS	86528921	86529082	86528921	ID=cds.MS.gene69027.t1;Parent=MS.gene69027.t1
chr6.2	exon	86529392	86530103	86529392	ID=MS.gene69027.t1.exon4;Parent=MS.gene69027.t1
chr6.2	CDS	86529392	86530103	86529392	ID=cds.MS.gene69027.t1;Parent=MS.gene69027.t1
chr6.2	exon	86531077	86531710	86531077	ID=MS.gene69027.t1.exon5;Parent=MS.gene69027.t1
chr6.2	CDS	86531077	86531710	86531077	ID=cds.MS.gene69027.t1;Parent=MS.gene69027.t1

Gene Sequence

>MS.gene69027

ATGAATCCCATAATATCATGCTCTGTCGGAAATTCTTCGGTTATTCCTGGAGTTGCCTATTTGACAAGAAAGAATAACTCGTTAACTAGACTCAACTTTTCAAGGAGTTCTTTAAGACACGGGTCATCAACTCGGAGATTTCTCTTTCCTTCATTTGTCGTCAATGGAGTTTTTCCTCAGAACAAGCGAATATGTTCTTACCGGAAAATATCTCGAACTTCCATATCAGCCACAGAAACGGAAGTATCTGTGGAGGTACAAGATTCACCTGTTGCCGATGAAGTTTCTGGTGAATCTCCTTCAAATGAAGTTGGAACAAGTGAAGACTCATCTCCTAAGTCCGATGCCAACACTGGTTCTACGAAAGCCAAACGTTCAAGACCTGCAAGGAAAAGCGAAATGCCTCCTGTAAAGAATGAGGATTTGGTTCCCGGGGCAGCTTTTACGGGGAAAGTAAAATCTATCCAACCGTTTGGTGCGTTTGTTGATTTCGGAGCTTTCACGGACGGACTTGTTCATATTTCAATGTTGAGTGATAGCTTTGTAAAGGATGTCTCAAGTGTTGTGTCTCTTGGACAAGAAGTTACGGTGAAGGTGATTGAAGTGAATGCTGAAACTAAGCGTATATCTCTATCTATGCGCGAAAACACTGATACTGATAAACGTAATGATGCACCGAACAATGCAGAGAAATCCGGCTCTGGGAGGTGGGATTCTCCGAAATCGGGTCCAAGGAAAGATAAGAAAAACACGAAATTTGTTGTAGGTCAGGAGTTGCAGGGTACGGTGAAGAATATGACGAGGAGTGGTACTTTTATATCACTTCCTGAAGGAGAGGAAGGATTTCTACCATTAGCTGAGGAAGATGACGATGGATTTGGGAAGATAATGGGAAAATCTTCTTTGGAGATTGGTCGAGAAGTTAGCGTACGAGTTTTGCGTATCACAAGAGGACAAGCGACATTGACCATGAAGAAGGAAGGAGCTGTTGCAGAATTGGACAAGGCACTTGCACAAGTGGGTGATGACGTCGCAACAAACCCTTTTGTATTGGCTTTTCGTAGAAATAAGGATATTGCTAAATTTTTGGATCAGAGGGAGAAACTTCAGAGTGAAGTTAAATCATCAACTACAGAAACTGTGGAAGATTCACTGGTCGATTCCTCGACAACTGTTGTGGACGCTGAAAGCAACCAAGAAGGAAGTATTATAAACGGTGCCGCTGAGAAGGAAACAGAGGCGGTTGCTGCTGAAAGTTTGGCTTCAGAAGAAGATTTAGATGCTGTAAATTCAATTATCGAGGAAGCTATTCAGACAGATATTGCAACAAGCAACGTCGAAACTGATTCACCGGTTGAAGTGGCTGATGAAAGTTTAATAGAAACTGACTCACTGGTTGAAGTGGCTGATCAAATTGTTGCGGAAGATGAAAAACTATCAGAAACTGACAATGGAAAGGAAGAATTTGTAGCTGCAACCGAGGTGGCTGATGAAAGTTTAATAGAAACTGACTCACTGGTTGAAGTGGCTGATCAAATTGTTGCGGAAGATGAAAAACTATCAGAAACTGACAATGGAAAGGAAGAACTTGTAGCTGCAACCGAGGCAGATAGTGATGCAGTTGAGCCTGGCCCTGTTGTTACAGAATCAGAGATTACGTCAAGGGCACCAGCTTCTCAAGAAACACCAGGTTCTTGTTTTCTATCTGTCTCTCTTTCTGCCCTTCTATCTCATTCGTATTTACATATGGAAATATTGGTCGTATGTCATTATCCGAAATTACAACTAAAATCAAACATATTTTGTGCAGTAAGATGCATGTTTAAGAGTTTCTTATTAACTTAACTAATAATATTTCCTTTGCATTTCAAATAGATGACAATGTTGCAGCTGTTTCAGATAACAATGAGATTGATGCTAGTTTGTCACCTGAGGAAAGCTTGAATAAAGGTTATGAATGAAATTGATAGAAAGTTTTTTGAGCTTTTTTGAACTTTGTATTTAAATCATATATTACACCCCATTTCCTATATGATCCCAATCAACTTTATGCAACCGAAGCAATTGCACCCCTTTCTTTTCCTATAGTATCCTATTAACTTTGAATCCTCTATCGGCAGATGTAGCTGAAGAAAACAATCAAGTTCCCTCTCCTGAAAGTCCTGCCACTGAAGAGGTGCAAGAACAAACACCTGTATCAGCACAAGTTGAAGATGAAGCGGTTGCAATTGCATCTGAAACAAACAGCAACTTATCTGCTTCAGATGAAGGCTCGACTAAAGGTTTCCATTTCATCTTATTTGCTTCATATTTCAACTCTCATTTTTCTATATCTATCAGAAATAAATATATTAGACAGATTTGAATTTTTACATGTAAAAGAGAAGAAAAAATGAATATACTTCCATCTTTAATGTATTTTGTCTTTTGTTATCAAAATAGCTTATATATTGAGTGCTTATCTTATAAGCTTTAATTAGGTTGTTTATCCAAACAAGGTCATAGTTTTCTAGCCTGTTCACCTATCTTTGAATTCTTAGATAAGACTTTCTAATTGTTAAATGTTTGTTTCGCCGCCCTTTGGATTGCAGCAACTATATCACCTGCACTTGTGAAGCAACTTCGGGACGAAACAGGAGCTGGAATGATGGACTGCAAAAATGCTCTTTCTGAAAGTGAAGGTGACATTATCAAAGCACAAGAGCTCCTTAGAAAAAAAGGCTTAGCGAGTGCAGACAAGAAAGCAACCAGAGCAACCGCCGAAGGAAGGATAGGTTCTTACATCCATGACAGCAGGATCGGTGTTTTGGTAGAAGTAAATTGCGAGACAGATTTTGTCTCCCGAGGTGAAATTTTCAAAGAGCTTGTCGATGATATAGCCATGCAAGTGGCTGCGTGCCCCCAAGTAGAGTATGTTGTTACTGAAGACGTTCCTGAGGAGTTTGTGAAGAAAGAAACGGAGATAGAAATGCAAAAAGAAGATCTTGCGTCAAAACCGGAGCAAATTAGATCAAGGATTGTTGAAGGACGGATAAGGAAAAGACTTGAGGATTTAGCGTTGCTTGAGCAGCCCTACATCAAGAATGATAAAGTGACAGTAAAGGATATGGTTAAGCAGACAATTGCAACCATTGGAGAAAATATGAAAGTTACAAGGTTTGTGCGTTTCAACCTTGGAGAAGGTTTGGAAAAGAAAAGCCAGGATTTTGCTGCTGAAGTCGCCGCACAAACTTCAGCAAAACCAGTAACTACTCCAGTGACAGAGGAGCCTGTTGCCGCAGAAGCCAAGGAGACTGAACCAAAGTAAGTGTAGTTCAATGAATTTCAACTTGTTATTGAGTTATTTAATTATGAAATTTTGGTAGACATTTAAAAATAAGATAAACGATGGCTTTTAAATTAAGTTAAAGGACCCCTTATGTAGTTTTTCCCATTATGAAATTTCCATAATTATGCCAAAGTAGATATTTCTTGGCTCATCTGTGTTCTAAATCGTTCAGGCAATGGCTTGGATTTCTCATTTTCCTACTCTTTTTTATTCACTTCAAATTTTATATTACTCTTTTTACAAATGATGTGAAGAACTGACTCACTTTTGAAATCTACAAACTATATGAGGGTGCTACGTTTTCTTGAATATTTTAACCCTAACCTTCCCTGCATATTTGTATTTATGTTAAATATTAGTACCTATGAGTTATTCTTGCTATAGACAAAACTTAACCTAACTGTGACTGTATGATTTGTGAGCGTCAGTCTACGAAAGCACTGACACGAATACGGACTTTTGACACAACACTAACACTGACATGCTAGTTGTACACACAAAATTTGAGAAAAAAATGGATGTGTTTGACGCAAATATTTAATTGTTCAATGTTTTGTTGAAGAACTGACTCACTTTTGGAATCTCTTAAAGGAACTGACTCACTTTTGAAATCTACAAACTATAAGAGGTTAGAGGGTGCTATGTTTTCTTTGAATATTTTAACCCTAACCTTCCCTGCATATTTGTATTTATGTTAAATATTACCTATGACAAAACTTAACCTATGCTGTAACTGTATGATTTGTGAGAGTCAGTCTATGAAAACACCGACACAAACACGGACATTTGACACGACACTAACACTGACATGCCGACACCAGTAGTAATTTTAGAAAATGCAACAACTGAATGTAACAACATGTGTACGTGTTAGTTGTAAACACAAAATTTGAGAAAAAAATGGATCTGTTTGACGAAAATATTAAATTGTTCAATGTTGTGTTGCAGGAAATCAACAGTAGTGGTCTCAGCGTCTTTGGTCAAGCAACTACGAGAAGAAACCGGTGCAGGGATGATGGACTGTAAGAAAGCTCTTGCTGAAACGGAAGGCGATCTTGAAAAGGCGCAAGCATATCTCAGGAAAAAGGGTCTCTCATCCGCTGATAAGAAATCCGGAAGACTAGCAGCTGAAGGAAGAATCGGCACATACATTCACGATGCACGCATCGGTGTTCTAATCGAAGTGAACTGTGAAACCGACTTTGTTGGCAGAAGTGAGAAATTCAAGGAGTTGGTTGATGATCTTGCAATGCAAGTTGCTGCTTGTCCACAGGTTCAGTTTGTATCTATTGGAGATATTCCCGAAACTATTGTAACGAAGGAAAAAGAACTTGAGATGCAAAGAGAAGACCTTGCTTCAAAACCCGAGAACATTAGAGAGAAAATTGTCGAGGGAAGAATCTCAAAGAGGTTAGGAGAGCTTGCTCTTCTAGAGCAGCCTTTTATTAAGGATGACAGTGTTGTAGTGAAAGACTTGGTGAGACAAAGTATAGCTGCTATTGGAGAGAACATTAAAGTGCGGCGTTTTGTTCGGTTCACTCTCGGAGAAACAGTTCAAAAAGAAACAGCCATACCAGCGTAG

Protein sequence

>MS.gene69027.t1

MNPIISCSVGNSSVIPGVAYLTRKNNSLTRLNFSRSSLRHGSSTRRFLFPSFVVNGVFPQNKRICSYRKISRTSISATETEVSVEVQDSPVADEVSGESPSNEVGTSEDSSPKSDANTGSTKAKRSRPARKSEMPPVKNEDLVPGAAFTGKVKSIQPFGAFVDFGAFTDGLVHISMLSDSFVKDVSSVVSLGQEVTVKVIEVNAETKRISLSMRENTDTDKRNDAPNNAEKSGSGRWDSPKSGPRKDKKNTKFVVGQELQGTVKNMTRSGTFISLPEGEEGFLPLAEEDDDGFGKIMGKSSLEIGREVSVRVLRITRGQATLTMKKEGAVAELDKALAQVGDDVATNPFVLAFRRNKDIAKFLDQREKLQSEVKSSTTETVEDSLVDSSTTVVDAESNQEGSIINGAAEKETEAVAAESLASEEDLDAVNSIIEEAIQTDIATSNVETDSPVEVADESLIETDSLVEVADQIVAEDEKLSETDNGKEEFVAATEVADESLIETDSLVEVADQIVAEDEKLSETDNGKEELVAATEADSDAVEPGPVVTESEITSRAPASQETPDDNVAAVSDNNEIDASLSPEESLNKDVAEENNQVPSPESPATEEVQEQTPVSAQVEDEAVAIASETNSNLSASDEGSTKATISPALVKQLRDETGAGMMDCKNALSESEGDIIKAQELLRKKGLASADKKATRATAEGRIGSYIHDSRIGVLVEVNCETDFVSRGEIFKELVDDIAMQVAACPQVEYVVTEDVPEEFVKKETEIEMQKEDLASKPEQIRSRIVEGRIRKRLEDLALLEQPYIKNDKVTVKDMVKQTIATIGENMKVTRFVRFNLGEGLEKKSQDFAAEVAAQTSAKPVTTPVTEEPVAAEAKETEPKKSTVVVSASLVKQLREETGAGMMDCKKALAETEGDLEKAQAYLRKKGLSSADKKSGRLAAEGRIGTYIHDARIGVLIEVNCETDFVGRSEKFKELVDDLAMQVAACPQVQFVSIGDIPETIVTKEKELEMQREDLASKPENIREKIVEGRISKRLGELALLEQPFIKDDSVVVKDLVRQSIAAIGENIKVRRFVRFTLGETVQKETAIPA