Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055152.t1 | XP_003623173.1 | 92.9 | 224 | 16 | 0 | 1 | 224 | 1 | 224 | 3.30E-117 | 431 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055152.t1 | P32110 | 70.2 | 225 | 66 | 1 | 1 | 224 | 1 | 225 | 3.4e-86 | 319.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055152.t1 | G7L5M4 | 92.9 | 224 | 16 | 0 | 1 | 224 | 1 | 224 | 2.4e-117 | 431.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055152 | MS.gene058494 | 0.815279 | 1.00E-51 | -1.69E-46 |
| MS.gene055152 | MS.gene21870 | 0.800698 | 1.28E-48 | -1.69E-46 |
| MS.gene055152 | MS.gene27832 | 0.808198 | 3.48E-50 | -1.69E-46 |
| MS.gene055152 | MS.gene27833 | 0.80119 | 1.01E-48 | -1.69E-46 |
| MS.gene055152 | MS.gene46060 | 0.808706 | 2.71E-50 | -1.69E-46 |
| MS.gene055152 | MS.gene64821 | 0.802281 | 6.04E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055152.t1 | MTR_7g065270 | 92.857 | 224 | 16 | 0 | 1 | 224 | 1 | 224 | 6.54e-154 | 426 |
| MS.gene055152.t1 | MTR_7g065290 | 88.393 | 224 | 26 | 0 | 1 | 224 | 1 | 224 | 1.91e-146 | 407 |
| MS.gene055152.t1 | MTR_7g065265 | 88.393 | 224 | 26 | 0 | 1 | 224 | 1 | 224 | 1.87e-145 | 404 |
| MS.gene055152.t1 | MTR_7g065590 | 76.786 | 224 | 52 | 0 | 1 | 224 | 1 | 224 | 5.33e-126 | 355 |
| MS.gene055152.t1 | MTR_7g065600 | 75.446 | 224 | 55 | 0 | 1 | 224 | 1 | 224 | 6.15e-126 | 355 |
| MS.gene055152.t1 | MTR_7g065230 | 76.339 | 224 | 48 | 1 | 1 | 224 | 1 | 219 | 1.28e-122 | 347 |
| MS.gene055152.t1 | MTR_7g065720 | 68.889 | 225 | 69 | 1 | 1 | 224 | 1 | 225 | 2.89e-109 | 313 |
| MS.gene055152.t1 | MTR_7g065260 | 73.778 | 225 | 58 | 1 | 1 | 224 | 8 | 232 | 3.41e-109 | 313 |
| MS.gene055152.t1 | MTR_7g065660 | 65.471 | 223 | 77 | 0 | 1 | 223 | 1 | 223 | 1.63e-107 | 308 |
| MS.gene055152.t1 | MTR_7g065750 | 67.580 | 219 | 70 | 1 | 1 | 218 | 1 | 219 | 3.19e-105 | 303 |
| MS.gene055152.t1 | MTR_7g065630 | 66.667 | 219 | 69 | 1 | 1 | 219 | 19 | 233 | 2.05e-102 | 296 |
| MS.gene055152.t1 | MTR_7g065740 | 64.840 | 219 | 76 | 1 | 1 | 218 | 1 | 219 | 1.74e-101 | 293 |
| MS.gene055152.t1 | MTR_4g019790 | 64.055 | 217 | 78 | 0 | 1 | 217 | 1 | 217 | 5.25e-101 | 292 |
| MS.gene055152.t1 | MTR_7g065640 | 59.641 | 223 | 72 | 1 | 1 | 223 | 1 | 205 | 1.40e-94 | 275 |
| MS.gene055152.t1 | MTR_7g065710 | 63.285 | 207 | 72 | 1 | 8 | 214 | 5 | 207 | 1.61e-91 | 268 |
| MS.gene055152.t1 | MTR_4g019780 | 60.000 | 215 | 84 | 2 | 2 | 215 | 3 | 216 | 3.27e-91 | 267 |
| MS.gene055152.t1 | MTR_7g065680 | 63.426 | 216 | 75 | 1 | 1 | 216 | 1 | 212 | 1.38e-85 | 253 |
| MS.gene055152.t1 | MTR_7g065700 | 63.551 | 214 | 74 | 1 | 1 | 214 | 1 | 210 | 7.80e-85 | 251 |
| MS.gene055152.t1 | MTR_6g080440 | 48.077 | 208 | 106 | 2 | 7 | 213 | 3 | 209 | 4.56e-64 | 198 |
| MS.gene055152.t1 | MTR_1g090150 | 46.729 | 214 | 109 | 3 | 6 | 216 | 2 | 213 | 1.20e-62 | 195 |
| MS.gene055152.t1 | MTR_3g099757 | 47.170 | 212 | 110 | 2 | 5 | 215 | 3 | 213 | 1.12e-58 | 184 |
| MS.gene055152.t1 | MTR_8g087425 | 43.636 | 220 | 122 | 2 | 4 | 222 | 2 | 220 | 2.59e-58 | 184 |
| MS.gene055152.t1 | MTR_1g115195 | 42.661 | 218 | 122 | 2 | 7 | 221 | 3 | 220 | 2.17e-55 | 176 |
| MS.gene055152.t1 | MTR_5g040430 | 41.892 | 222 | 121 | 3 | 1 | 215 | 1 | 221 | 7.31e-54 | 172 |
| MS.gene055152.t1 | MTR_8g087410 | 41.629 | 221 | 126 | 3 | 1 | 220 | 1 | 219 | 3.51e-52 | 168 |
| MS.gene055152.t1 | MTR_4g059730 | 42.791 | 215 | 115 | 5 | 6 | 215 | 3 | 214 | 4.84e-51 | 165 |
| MS.gene055152.t1 | MTR_1g090070 | 42.081 | 221 | 123 | 3 | 7 | 223 | 9 | 228 | 9.78e-51 | 164 |
| MS.gene055152.t1 | MTR_5g037380 | 42.601 | 223 | 118 | 3 | 1 | 215 | 1 | 221 | 2.41e-50 | 164 |
| MS.gene055152.t1 | MTR_1g090060 | 42.105 | 209 | 117 | 2 | 7 | 212 | 3 | 210 | 7.59e-50 | 162 |
| MS.gene055152.t1 | MTR_1g090090 | 41.905 | 210 | 118 | 2 | 7 | 213 | 3 | 211 | 7.15e-49 | 160 |
| MS.gene055152.t1 | MTR_8g061950 | 42.466 | 219 | 118 | 3 | 5 | 215 | 3 | 221 | 9.10e-49 | 160 |
| MS.gene055152.t1 | MTR_1g090100 | 40.654 | 214 | 123 | 2 | 8 | 218 | 3 | 215 | 2.69e-47 | 155 |
| MS.gene055152.t1 | MTR_2g070130 | 41.176 | 204 | 115 | 5 | 6 | 207 | 3 | 203 | 9.23e-45 | 149 |
| MS.gene055152.t1 | MTR_2g070150 | 39.706 | 204 | 118 | 5 | 6 | 207 | 3 | 203 | 1.34e-43 | 145 |
| MS.gene055152.t1 | MTR_3g467420 | 41.063 | 207 | 117 | 5 | 16 | 220 | 18 | 221 | 2.41e-43 | 145 |
| MS.gene055152.t1 | MTR_2g070200 | 40.196 | 204 | 118 | 4 | 6 | 207 | 3 | 204 | 5.12e-42 | 142 |
| MS.gene055152.t1 | MTR_2g070140 | 40.000 | 195 | 112 | 5 | 20 | 212 | 1 | 192 | 7.24e-42 | 141 |
| MS.gene055152.t1 | MTR_4g124130 | 44.974 | 189 | 98 | 5 | 6 | 191 | 3 | 188 | 1.16e-41 | 141 |
| MS.gene055152.t1 | MTR_8g056940 | 40.865 | 208 | 115 | 5 | 16 | 218 | 13 | 217 | 4.10e-41 | 139 |
| MS.gene055152.t1 | MTR_3g467430 | 38.356 | 219 | 130 | 5 | 4 | 220 | 6 | 221 | 4.65e-41 | 139 |
| MS.gene055152.t1 | MTR_2g070180 | 39.175 | 194 | 113 | 5 | 16 | 207 | 13 | 203 | 1.83e-40 | 138 |
| MS.gene055152.t1 | MTR_5g076900 | 39.906 | 213 | 121 | 5 | 3 | 212 | 2 | 210 | 6.61e-40 | 137 |
| MS.gene055152.t1 | MTR_2g070210 | 39.151 | 212 | 120 | 7 | 6 | 212 | 3 | 210 | 9.65e-39 | 134 |
| MS.gene055152.t1 | MTR_2g070120 | 34.247 | 219 | 139 | 4 | 6 | 222 | 3 | 218 | 8.27e-37 | 129 |
| MS.gene055152.t1 | MTR_2g070070 | 38.500 | 200 | 118 | 4 | 7 | 204 | 4 | 200 | 4.63e-35 | 124 |
| MS.gene055152.t1 | MTR_2g070060 | 36.058 | 208 | 128 | 4 | 7 | 212 | 4 | 208 | 2.12e-34 | 122 |
| MS.gene055152.t1 | MTR_0186s0030 | 47.692 | 130 | 66 | 2 | 16 | 144 | 13 | 141 | 2.15e-33 | 117 |
| MS.gene055152.t1 | MTR_2g070110 | 37.500 | 200 | 119 | 4 | 7 | 204 | 4 | 199 | 9.40e-29 | 107 |
| MS.gene055152.t1 | MTR_2g072120 | 46.154 | 65 | 34 | 1 | 51 | 114 | 2 | 66 | 3.50e-14 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055152.t1 | AT3G09270 | 53.211 | 218 | 98 | 4 | 3 | 217 | 2 | 218 | 3.66e-76 | 229 |
| MS.gene055152.t1 | AT2G29420 | 47.465 | 217 | 112 | 2 | 3 | 218 | 5 | 220 | 4.81e-70 | 214 |
| MS.gene055152.t1 | AT2G29490 | 49.282 | 209 | 103 | 3 | 1 | 207 | 1 | 208 | 3.67e-62 | 194 |
| MS.gene055152.t1 | AT2G29450 | 48.792 | 207 | 104 | 2 | 3 | 207 | 2 | 208 | 6.87e-60 | 188 |
| MS.gene055152.t1 | AT2G29480 | 48.804 | 209 | 104 | 3 | 1 | 207 | 1 | 208 | 1.80e-59 | 187 |
| MS.gene055152.t1 | AT2G29460 | 46.890 | 209 | 108 | 3 | 1 | 207 | 1 | 208 | 1.90e-56 | 179 |
| MS.gene055152.t1 | AT2G29440 | 46.411 | 209 | 108 | 4 | 1 | 207 | 1 | 207 | 2.97e-55 | 176 |
| MS.gene055152.t1 | AT2G29470 | 46.445 | 211 | 107 | 5 | 1 | 207 | 1 | 209 | 6.52e-55 | 175 |
| MS.gene055152.t1 | AT1G27130 | 40.000 | 225 | 126 | 4 | 1 | 217 | 1 | 224 | 3.10e-48 | 158 |
| MS.gene055152.t1 | AT1G10370 | 41.176 | 221 | 121 | 3 | 1 | 214 | 1 | 219 | 3.57e-48 | 158 |
| MS.gene055152.t1 | AT1G69930 | 36.937 | 222 | 134 | 2 | 2 | 217 | 7 | 228 | 5.91e-48 | 157 |
| MS.gene055152.t1 | AT1G59700 | 44.037 | 218 | 114 | 4 | 5 | 214 | 4 | 221 | 2.63e-47 | 156 |
| MS.gene055152.t1 | AT5G62480 | 40.826 | 218 | 118 | 4 | 8 | 215 | 9 | 225 | 6.85e-47 | 155 |
| MS.gene055152.t1 | AT1G59670 | 41.827 | 208 | 113 | 3 | 5 | 204 | 4 | 211 | 7.52e-46 | 152 |
| MS.gene055152.t1 | AT1G27140 | 37.826 | 230 | 133 | 4 | 1 | 221 | 1 | 229 | 3.57e-44 | 148 |
| MS.gene055152.t1 | AT1G10360 | 37.379 | 206 | 122 | 2 | 6 | 204 | 4 | 209 | 3.06e-43 | 145 |
| MS.gene055152.t1 | AT1G74590 | 36.364 | 220 | 133 | 3 | 1 | 214 | 1 | 219 | 3.33e-43 | 145 |
| MS.gene055152.t1 | AT1G78370 | 40.686 | 204 | 115 | 6 | 16 | 217 | 13 | 212 | 4.71e-43 | 144 |
| MS.gene055152.t1 | AT1G78340 | 43.256 | 215 | 114 | 6 | 6 | 216 | 3 | 213 | 5.76e-43 | 144 |
| MS.gene055152.t1 | AT1G78320 | 40.580 | 207 | 118 | 4 | 6 | 210 | 3 | 206 | 2.02e-42 | 143 |
| MS.gene055152.t1 | AT1G78380 | 41.827 | 208 | 116 | 5 | 7 | 212 | 4 | 208 | 2.86e-42 | 142 |
| MS.gene055152.t1 | AT1G17170 | 39.906 | 213 | 122 | 5 | 6 | 216 | 3 | 211 | 5.99e-42 | 142 |
| MS.gene055152.t1 | AT1G69920 | 37.004 | 227 | 133 | 4 | 1 | 217 | 26 | 252 | 3.02e-41 | 141 |
| MS.gene055152.t1 | AT1G53680 | 39.048 | 210 | 123 | 4 | 1 | 207 | 1 | 208 | 7.20e-40 | 137 |
| MS.gene055152.t1 | AT1G17180 | 39.234 | 209 | 122 | 5 | 6 | 212 | 3 | 208 | 5.24e-39 | 134 |
| MS.gene055152.t1 | AT3G43800 | 38.164 | 207 | 119 | 6 | 4 | 204 | 2 | 205 | 3.54e-37 | 130 |
| MS.gene055152.t1 | AT1G17190 | 42.697 | 178 | 97 | 5 | 16 | 191 | 14 | 188 | 5.60e-37 | 129 |
| MS.gene055152.t1 | AT1G78360 | 39.234 | 209 | 121 | 6 | 7 | 212 | 4 | 209 | 1.48e-35 | 125 |
| MS.gene055152.t1 | AT5G62480 | 32.719 | 217 | 111 | 4 | 8 | 215 | 9 | 199 | 1.26e-29 | 110 |
| MS.gene055152.t1 | AT5G62480 | 32.719 | 217 | 110 | 4 | 8 | 215 | 9 | 198 | 2.54e-29 | 109 |
| MS.gene055152.t1 | AT1G78320 | 33.010 | 206 | 108 | 4 | 6 | 210 | 3 | 179 | 7.34e-26 | 99.8 |
| MS.gene055152.t1 | AT2G02380 | 28.372 | 215 | 135 | 6 | 5 | 207 | 9 | 216 | 9.87e-16 | 73.6 |
| MS.gene055152.t1 | AT2G02390 | 27.189 | 217 | 139 | 5 | 3 | 207 | 4 | 213 | 1.10e-12 | 65.5 |
| MS.gene055152.t1 | AT2G02390 | 26.339 | 224 | 139 | 5 | 3 | 207 | 4 | 220 | 5.46e-12 | 63.5 |
| MS.gene055152.t1 | AT2G02390 | 39.175 | 97 | 55 | 3 | 3 | 96 | 4 | 99 | 7.95e-12 | 62.4 |
Find 37 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACCTTATCATCGATGAAAT+TGG | 0.206304 | 7.4:-39407627 | None:intergenic |
| GCTCGTTATGAAGATCATTT+TGG | 0.234577 | 7.4:+39408873 | MS.gene055152:CDS |
| ATTTCCACCCTGGTTGAAAA+TGG | 0.241103 | 7.4:-39407374 | None:intergenic |
| AGTCCAAATGCTTCTTCTAT+TGG | 0.250996 | 7.4:-39408732 | None:intergenic |
| AATTTCCGAAGCTTTATAAT+TGG | 0.265325 | 7.4:+39408775 | MS.gene055152:CDS |
| ACAGGAACTTTCTTATAAAC+AGG | 0.283283 | 7.4:-39407479 | None:intergenic |
| TTGGGTGATTGTTGAATTCT+TGG | 0.291920 | 7.4:-39408800 | None:intergenic |
| GAGCTCAAAGACAAATTCTT+TGG | 0.309252 | 7.4:+39408651 | MS.gene055152:CDS |
| CTCTACGATGGCATCAAATA+AGG | 0.319615 | 7.4:+39407319 | None:intergenic |
| TAAGGGTCAGAAGGCAAGAT+TGG | 0.381370 | 7.4:-39407578 | None:intergenic |
| CAACAATCACCCAATTGTTA+AGG | 0.381761 | 7.4:+39408809 | MS.gene055152:CDS |
| AAATATGAGAACGAAGAGTC+TGG | 0.386830 | 7.4:+39407425 | MS.gene055152:CDS |
| TGGCTCCAATTATAAAGCTT+CGG | 0.395078 | 7.4:-39408780 | None:intergenic |
| TTCTTTGGTGGGGAGGAGAT+TGG | 0.431190 | 7.4:+39408666 | MS.gene055152:CDS |
| GCCTCCTAGAGAGATCCTTT+TGG | 0.436004 | 7.4:+39408839 | MS.gene055152:CDS |
| GTCCAATTTCATCGATGATA+AGG | 0.442155 | 7.4:+39407625 | MS.gene055152:CDS |
| TCTCCAATAGAAGAAGCATT+TGG | 0.446494 | 7.4:+39408729 | MS.gene055152:CDS |
| GGAAATAGCTCTAAAATTGA+AGG | 0.468732 | 7.4:+39407391 | MS.gene055152:CDS |
| CTCAAAGACAAATTCTTTGG+TGG | 0.503966 | 7.4:+39408654 | MS.gene055152:CDS |
| AATCACAAATGACTCTGAGA+TGG | 0.521673 | 7.4:-39407522 | None:intergenic |
| TCAAAGACAAATTCTTTGGT+GGG | 0.523453 | 7.4:+39408655 | MS.gene055152:CDS |
| TTGAATACATCGATGAGACT+TGG | 0.524005 | 7.4:+39407546 | MS.gene055152:CDS |
| AGAACGTGAGAAGAGTATTG+AGG | 0.526929 | 7.4:+39408596 | MS.gene055152:CDS |
| ATCACAAATGACTCTGAGAT+GGG | 0.538274 | 7.4:-39407521 | None:intergenic |
| ATCAAATAAGGAAGAGGTGA+AGG | 0.549693 | 7.4:+39407331 | MS.gene055152:CDS |
| GAGCTTTGTAGAATGCCAAA+AGG | 0.555972 | 7.4:-39408854 | None:intergenic |
| CAGGAACTTTCTTATAAACA+GGG | 0.557657 | 7.4:-39407478 | None:intergenic |
| GAGTATTGAGGAAACAAAAG+AGG | 0.559224 | 7.4:+39408608 | MS.gene055152:CDS |
| AATGCCAAAAGGATCTCTCT+AGG | 0.560384 | 7.4:-39408843 | None:intergenic |
| CAAAGACAAATTCTTTGGTG+GGG | 0.574827 | 7.4:+39408656 | MS.gene055152:CDS |
| AGACAAATTCTTTGGTGGGG+AGG | 0.574875 | 7.4:+39408659 | MS.gene055152:CDS |
| GATGGCATCAAATAAGGAAG+AGG | 0.575114 | 7.4:+39407325 | None:intergenic |
| AATATGAGAACGAAGAGTCT+GGG | 0.585074 | 7.4:+39407426 | MS.gene055152:CDS |
| GAAATAGCTCTAAAATTGAA+GGG | 0.594017 | 7.4:+39407392 | MS.gene055152:CDS |
| ACTGAAATTGTTCACTAGTG+AGG | 0.598807 | 7.4:+39408752 | MS.gene055152:CDS |
| ATTGGACCAGAAACGAGCCA+AGG | 0.680795 | 7.4:-39407609 | None:intergenic |
| GCCAAAAGGATCTCTCTAGG+AGG | 0.687746 | 7.4:-39408840 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACAAATTAATTAACTTA+TGG | + | chr7.4:39408246-39408265 | MS.gene055152:intron | 10.0% |
| !!! | AATTAAATTATGTTTTCTTT+TGG | - | chr7.4:39408090-39408109 | None:intergenic | 10.0% |
| !!! | ATTAAACTATGTTATATTTT+AGG | - | chr7.4:39407775-39407794 | None:intergenic | 10.0% |
| !!! | TAATTAATTTGTTTTTGTAT+AGG | - | chr7.4:39408241-39408260 | None:intergenic | 10.0% |
| !! | AAAAAAAATATCAATTTAGG+TGG | - | chr7.4:39407821-39407840 | None:intergenic | 15.0% |
| !!! | ATTTTTTTTTACTGTTAACA+TGG | + | chr7.4:39408495-39408514 | MS.gene055152:intron | 15.0% |
| !!! | CTTATTATAATCAAGATTTT+GGG | + | chr7.4:39408011-39408030 | MS.gene055152:intron | 15.0% |
| !!! | GTAGCATTAAATATTTTTTA+GGG | + | chr7.4:39407739-39407758 | MS.gene055152:intron | 15.0% |
| !!! | TAGCATTAAATATTTTTTAG+GGG | + | chr7.4:39407740-39407759 | MS.gene055152:intron | 15.0% |
| !!! | TCTTATTATAATCAAGATTT+TGG | + | chr7.4:39408010-39408029 | MS.gene055152:intron | 15.0% |
| !! | ACTTTAGTTACCATTAAATA+TGG | + | chr7.4:39407707-39407726 | MS.gene055152:intron | 20.0% |
| !! | TATTTAATGGTAACTAAAGT+TGG | - | chr7.4:39407707-39407726 | None:intergenic | 20.0% |
| !! | TTATCATTATGAACAAAAAC+AGG | - | chr7.4:39407500-39407519 | None:intergenic | 20.0% |
| !!! | AATTATGTTATTTGTCCATT+TGG | - | chr7.4:39407948-39407967 | None:intergenic | 20.0% |
| !!! | ACCATTAAATATGGTTTTTT+AGG | + | chr7.4:39407716-39407735 | MS.gene055152:intron | 20.0% |
| !!! | ATTATGTTATTTGTCCATTT+GGG | - | chr7.4:39407947-39407966 | None:intergenic | 20.0% |
| !!! | ATTCTTGATGTTATTTTTCT+AGG | + | chr7.4:39408431-39408450 | MS.gene055152:intron | 20.0% |
| !!! | CCATTAAATATGGTTTTTTA+GGG | + | chr7.4:39407717-39407736 | MS.gene055152:intron | 20.0% |
| !!! | GGTAGCATTAAATATTTTTT+AGG | + | chr7.4:39407738-39407757 | MS.gene055152:intron | 20.0% |
| !!! | TAATAACTACCTTAATTTGT+GGG | + | chr7.4:39408524-39408543 | MS.gene055152:intron | 20.0% |
| !!! | TTAATAACTACCTTAATTTG+TGG | + | chr7.4:39408523-39408542 | MS.gene055152:intron | 20.0% |
| !!! | TTCTTGATGTTATTTTTCTA+GGG | + | chr7.4:39408432-39408451 | MS.gene055152:intron | 20.0% |
| ! | ACACAAAGAAAAATTGAAGA+GGG | - | chr7.4:39407661-39407680 | None:intergenic | 25.0% |
| ! | ACATAGTAGTATAAGTTAAG+AGG | - | chr7.4:39408468-39408487 | None:intergenic | 25.0% |
| ! | CCCTAAAAAACCATATTTAA+TGG | - | chr7.4:39407720-39407739 | None:intergenic | 25.0% |
| ! | TAAAGTTGGATATATGAACT+TGG | - | chr7.4:39407693-39407712 | None:intergenic | 25.0% |
| ! | TACACAAAGAAAAATTGAAG+AGG | - | chr7.4:39407662-39407681 | None:intergenic | 25.0% |
| !! | AATTTCCGAAGCTTTATAAT+TGG | + | chr7.4:39408775-39408794 | MS.gene055152:CDS | 25.0% |
| !! | GCAATTTTTCCTTAACAATT+GGG | - | chr7.4:39408821-39408840 | None:intergenic | 25.0% |
| !!! | GAAATAGCTCTAAAATTGAA+GGG | + | chr7.4:39407392-39407411 | MS.gene055152:CDS | 25.0% |
| ACAGGAACTTTCTTATAAAC+AGG | - | chr7.4:39407482-39407501 | None:intergenic | 30.0% | |
| ATTCTCTCCGATATCAATTT+AGG | - | chr7.4:39407863-39407882 | None:intergenic | 30.0% | |
| CACAAAGAAAAATTGAAGAG+GGG | - | chr7.4:39407660-39407679 | None:intergenic | 30.0% | |
| CAGGAACTTTCTTATAAACA+GGG | - | chr7.4:39407481-39407500 | None:intergenic | 30.0% | |
| GATATATGAACTTGGAATAG+AGG | - | chr7.4:39407685-39407704 | None:intergenic | 30.0% | |
| TACCTTATCATCGATGAAAT+TGG | - | chr7.4:39407630-39407649 | None:intergenic | 30.0% | |
| TAGTCCACCTAAATTGATAT+CGG | + | chr7.4:39407814-39407833 | MS.gene055152:intron | 30.0% | |
| TCAAAGACAAATTCTTTGGT+GGG | + | chr7.4:39408655-39408674 | MS.gene055152:CDS | 30.0% | |
| TTTGTATAGGAAGTCTTCTA+TGG | - | chr7.4:39408228-39408247 | None:intergenic | 30.0% | |
| ! | GGCAATTTTTCCTTAACAAT+TGG | - | chr7.4:39408822-39408841 | None:intergenic | 30.0% |
| !! | GGAAATAGCTCTAAAATTGA+AGG | + | chr7.4:39407391-39407410 | MS.gene055152:CDS | 30.0% |
| !!! | ATTTTGGGTTCAAATTCAGT+TGG | + | chr7.4:39408026-39408045 | MS.gene055152:intron | 30.0% |
| !!! | TTTTGGGTTCAAATTCAGTT+GGG | + | chr7.4:39408027-39408046 | MS.gene055152:intron | 30.0% |
| AAATATGAGAACGAAGAGTC+TGG | + | chr7.4:39407425-39407444 | MS.gene055152:CDS | 35.0% | |
| AATATGAGAACGAAGAGTCT+GGG | + | chr7.4:39407426-39407445 | MS.gene055152:CDS | 35.0% | |
| ACACTATTTGCCACAATTCA+AGG | - | chr7.4:39408380-39408399 | None:intergenic | 35.0% | |
| ACTGAAATTGTTCACTAGTG+AGG | + | chr7.4:39408752-39408771 | MS.gene055152:CDS | 35.0% | |
| AGTCCAAATGCTTCTTCTAT+TGG | - | chr7.4:39408735-39408754 | None:intergenic | 35.0% | |
| ATCAAATAAGGAAGAGGTGA+AGG | + | chr7.4:39407331-39407350 | MS.gene055152:CDS | 35.0% | |
| CAAAGACAAATTCTTTGGTG+GGG | + | chr7.4:39408656-39408675 | MS.gene055152:CDS | 35.0% | |
| CAACAATCACCCAATTGTTA+AGG | + | chr7.4:39408809-39408828 | MS.gene055152:CDS | 35.0% | |
| CTCAAAGACAAATTCTTTGG+TGG | + | chr7.4:39408654-39408673 | MS.gene055152:CDS | 35.0% | |
| GAGCTCAAAGACAAATTCTT+TGG | + | chr7.4:39408651-39408670 | MS.gene055152:CDS | 35.0% | |
| GGCAAATAGTGTATTGTGAT+TGG | + | chr7.4:39408388-39408407 | MS.gene055152:intron | 35.0% | |
| GTCCAATTTCATCGATGATA+AGG | + | chr7.4:39407625-39407644 | MS.gene055152:CDS | 35.0% | |
| TACGTACATCATTCATACAC+TGG | - | chr7.4:39408551-39408570 | None:intergenic | 35.0% | |
| TGGCTCCAATTATAAAGCTT+CGG | - | chr7.4:39408783-39408802 | None:intergenic | 35.0% | |
| TTCAAATTCAGTTGGGTATG+CGG | + | chr7.4:39408034-39408053 | MS.gene055152:intron | 35.0% | |
| TTGAATACATCGATGAGACT+TGG | + | chr7.4:39407546-39407565 | MS.gene055152:CDS | 35.0% | |
| TTGGGTGATTGTTGAATTCT+TGG | - | chr7.4:39408803-39408822 | None:intergenic | 35.0% | |
| ! | AATCACAAATGACTCTGAGA+TGG | - | chr7.4:39407525-39407544 | None:intergenic | 35.0% |
| ! | CTGCTGTGATCATATCTTTT+TGG | + | chr7.4:39408703-39408722 | MS.gene055152:CDS | 35.0% |
| ! | GCTCGTTATGAAGATCATTT+TGG | + | chr7.4:39408873-39408892 | MS.gene055152:CDS | 35.0% |
| ! | TGTTATTTGTCCATTTGGGT+TGG | - | chr7.4:39407943-39407962 | None:intergenic | 35.0% |
| !! | ATCACAAATGACTCTGAGAT+GGG | - | chr7.4:39407524-39407543 | None:intergenic | 35.0% |
| !! | GAGTATTGAGGAAACAAAAG+AGG | + | chr7.4:39408608-39408627 | MS.gene055152:CDS | 35.0% |
| !! | TCTCCAATAGAAGAAGCATT+TGG | + | chr7.4:39408729-39408748 | MS.gene055152:CDS | 35.0% |
| !!! | GTGAAGGTTTTTGGAATTGT+GGG | + | chr7.4:39407347-39407366 | MS.gene055152:CDS | 35.0% |
| AATGCCAAAAGGATCTCTCT+AGG | - | chr7.4:39408846-39408865 | None:intergenic | 40.0% | |
| ATATCGGAGAGAATCGAACA+TGG | + | chr7.4:39407869-39407888 | MS.gene055152:intron | 40.0% | |
| ATTTCCACCCTGGTTGAAAA+TGG | - | chr7.4:39407377-39407396 | None:intergenic | 40.0% | |
| CTATTTGCCACAATTCAAGG+AGG | - | chr7.4:39408377-39408396 | None:intergenic | 40.0% | |
| CTCTCCGATATCAATTTAGG+TGG | - | chr7.4:39407860-39407879 | None:intergenic | 40.0% | |
| TACACTGGTCCCACAAATTA+AGG | - | chr7.4:39408536-39408555 | None:intergenic | 40.0% | |
| TATCGGAGAGAATCGAACAT+GGG | + | chr7.4:39407870-39407889 | MS.gene055152:intron | 40.0% | |
| TGACCCTTACAAAAAAGCCT+TGG | + | chr7.4:39407592-39407611 | MS.gene055152:CDS | 40.0% | |
| ! | AAGGAAGAGGTGAAGGTTTT+TGG | + | chr7.4:39407338-39407357 | MS.gene055152:CDS | 40.0% |
| ! | AGGAGGTGTGACTGAAAAAT+AGG | - | chr7.4:39408360-39408379 | None:intergenic | 40.0% |
| ! | GAGCTTTGTAGAATGCCAAA+AGG | - | chr7.4:39408857-39408876 | None:intergenic | 40.0% |
| !! | AGAACGTGAGAAGAGTATTG+AGG | + | chr7.4:39408596-39408615 | MS.gene055152:CDS | 40.0% |
| !!! | GAGCCAAGGCTTTTTTGTAA+GGG | - | chr7.4:39407598-39407617 | None:intergenic | 40.0% |
| !!! | GCTTTTTTGTAAGGGTCAGA+AGG | - | chr7.4:39407590-39407609 | None:intergenic | 40.0% |
| !!! | GGTGAAGGTTTTTGGAATTG+TGG | + | chr7.4:39407346-39407365 | MS.gene055152:CDS | 40.0% |
| !!! | TTTTAGAGCTATTTCCACCC+TGG | - | chr7.4:39407387-39407406 | None:intergenic | 40.0% |
| AGACAAATTCTTTGGTGGGG+AGG | + | chr7.4:39408659-39408678 | MS.gene055152:CDS | 45.0% | |
| AGTCACACCTCCTTGAATTG+TGG | + | chr7.4:39408367-39408386 | MS.gene055152:intron | 45.0% | |
| TAAGGGTCAGAAGGCAAGAT+TGG | - | chr7.4:39407581-39407600 | None:intergenic | 45.0% | |
| ! | AAAAAGCCTTGGCTCGTTTC+TGG | + | chr7.4:39407603-39407622 | MS.gene055152:CDS | 45.0% |
| ! | AAGTCCATTTTCAACCAGGG+TGG | + | chr7.4:39407370-39407389 | MS.gene055152:CDS | 45.0% |
| ! | GGGAAGTCCATTTTCAACCA+GGG | + | chr7.4:39407367-39407386 | MS.gene055152:CDS | 45.0% |
| ! | TGGGAAGTCCATTTTCAACC+AGG | + | chr7.4:39407366-39407385 | MS.gene055152:CDS | 45.0% |
| !!! | CGAGCCAAGGCTTTTTTGTA+AGG | - | chr7.4:39407599-39407618 | None:intergenic | 45.0% |
| !! | TTTAAAAAAAATATCAATTT+AGG | - | chr7.4:39407824-39407843 | None:intergenic | 5.0% |
| ATTGGACCAGAAACGAGCCA+AGG | - | chr7.4:39407612-39407631 | None:intergenic | 50.0% | |
| GAATCGAACATGGGACCTTG+AGG | + | chr7.4:39407879-39407898 | MS.gene055152:intron | 50.0% | |
| GCCAAAAGGATCTCTCTAGG+AGG | - | chr7.4:39408843-39408862 | None:intergenic | 50.0% | |
| GTGGCATAGACTTGGGACTT+GGG | - | chr7.4:39407916-39407935 | None:intergenic | 50.0% | |
| TTCTTTGGTGGGGAGGAGAT+TGG | + | chr7.4:39408666-39408685 | MS.gene055152:CDS | 50.0% | |
| ! | GCCTCCTAGAGAGATCCTTT+TGG | + | chr7.4:39408839-39408858 | MS.gene055152:CDS | 50.0% |
| !! | TTTGTCCATTTGGGTTGGCC+AGG | - | chr7.4:39407938-39407957 | None:intergenic | 50.0% |
| AGTCCCAAGTCTATGCCACC+TGG | + | chr7.4:39407917-39407936 | MS.gene055152:intron | 55.0% | |
| GGTGGCATAGACTTGGGACT+TGG | - | chr7.4:39407917-39407936 | None:intergenic | 55.0% | |
| TCGAACATGGGACCTTGAGG+AGG | + | chr7.4:39407882-39407901 | MS.gene055152:intron | 55.0% | |
| TGGCCAGGTGGCATAGACTT+GGG | - | chr7.4:39407923-39407942 | None:intergenic | 55.0% | |
| TTGGCCAGGTGGCATAGACT+TGG | - | chr7.4:39407924-39407943 | None:intergenic | 55.0% | |
| TGCCACCTGGCCAACCCAAA+TGG | + | chr7.4:39407930-39407949 | MS.gene055152:intron | 60.0% | |
| ! | TGGGAGTGTGCTCCTCCTCA+AGG | - | chr7.4:39407897-39407916 | None:intergenic | 60.0% |
| !! | GTCCATTTGGGTTGGCCAGG+TGG | - | chr7.4:39407935-39407954 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 39407326 | 39408905 | 39407326 | ID=MS.gene055152 |
| chr7.4 | mRNA | 39407326 | 39408905 | 39407326 | ID=MS.gene055152.t1;Parent=MS.gene055152 |
| chr7.4 | exon | 39407326 | 39407646 | 39407326 | ID=MS.gene055152.t1.exon1;Parent=MS.gene055152.t1 |
| chr7.4 | CDS | 39407326 | 39407646 | 39407326 | ID=cds.MS.gene055152.t1;Parent=MS.gene055152.t1 |
| chr7.4 | exon | 39408552 | 39408905 | 39408552 | ID=MS.gene055152.t1.exon2;Parent=MS.gene055152.t1 |
| chr7.4 | CDS | 39408552 | 39408905 | 39408552 | ID=cds.MS.gene055152.t1;Parent=MS.gene055152.t1 |
| Gene Sequence |
| Protein sequence |
