AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene27833

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene27833.t1 MTR_8g087410 95.556 225 9 1 1 225 2 225 4.02e-158 437
MS.gene27833.t1 MTR_8g087425 63.839 224 80 1 1 224 1 223 2.46e-95 278
MS.gene27833.t1 MTR_6g080440 52.885 208 95 2 5 211 3 208 1.63e-71 217
MS.gene27833.t1 MTR_7g065720 48.113 212 106 3 2 211 4 213 1.31e-63 197
MS.gene27833.t1 MTR_4g019780 49.048 210 106 1 2 211 5 213 1.98e-62 194
MS.gene27833.t1 MTR_7g065740 43.111 225 124 3 2 224 4 226 8.73e-62 192
MS.gene27833.t1 MTR_1g090150 46.330 218 113 3 4 219 2 217 7.22e-60 188
MS.gene27833.t1 MTR_3g099757 46.890 209 110 1 1 209 1 208 9.85e-60 187
MS.gene27833.t1 MTR_7g065590 45.370 216 115 3 1 215 3 216 1.30e-59 187
MS.gene27833.t1 MTR_4g019790 45.249 221 118 3 5 224 7 225 4.12e-59 186
MS.gene27833.t1 MTR_7g065660 44.186 215 116 4 3 215 4 216 1.11e-58 185
MS.gene27833.t1 MTR_7g065750 43.556 225 123 3 2 224 4 226 3.69e-58 183
MS.gene27833.t1 MTR_7g065600 46.512 215 112 3 2 215 4 216 1.59e-57 182
MS.gene27833.t1 MTR_1g115195 45.413 218 115 3 5 219 3 219 3.11e-56 178
MS.gene27833.t1 MTR_7g065630 41.892 222 122 4 4 224 24 239 9.91e-56 177
MS.gene27833.t1 MTR_7g065290 45.540 213 113 3 4 215 6 216 1.10e-55 177
MS.gene27833.t1 MTR_7g065230 44.091 220 115 4 4 222 6 218 3.33e-54 173
MS.gene27833.t1 MTR_1g090060 43.636 220 121 2 5 222 3 221 1.58e-53 172
MS.gene27833.t1 MTR_7g065265 44.037 218 117 5 4 219 6 220 5.07e-53 170
MS.gene27833.t1 MTR_7g065710 44.444 207 108 4 6 211 5 205 1.24e-52 169
MS.gene27833.t1 MTR_7g065270 43.318 217 120 3 4 219 6 220 2.71e-51 166
MS.gene27833.t1 MTR_7g065680 38.117 223 131 4 3 224 5 221 9.72e-51 164
MS.gene27833.t1 MTR_1g090070 42.791 215 119 3 1 212 5 218 1.06e-50 164
MS.gene27833.t1 MTR_5g040430 41.315 213 118 3 3 209 5 216 1.86e-50 164
MS.gene27833.t1 MTR_2g070150 45.098 204 108 3 5 207 4 204 2.68e-50 162
MS.gene27833.t1 MTR_7g065260 45.701 221 107 5 4 218 13 226 4.81e-50 163
MS.gene27833.t1 MTR_4g059730 43.172 227 111 5 1 218 1 218 1.01e-49 162
MS.gene27833.t1 MTR_7g065640 41.395 215 104 4 3 215 4 198 3.83e-49 160
MS.gene27833.t1 MTR_2g070120 43.694 222 117 4 5 225 4 218 8.40e-49 159
MS.gene27833.t1 MTR_2g070180 44.118 204 110 3 6 208 5 205 7.54e-48 157
MS.gene27833.t1 MTR_2g070200 39.815 216 126 3 5 218 4 217 5.63e-47 155
MS.gene27833.t1 MTR_2g070140 45.026 191 101 3 19 208 2 189 2.72e-46 152
MS.gene27833.t1 MTR_1g090090 40.278 216 126 2 5 218 3 217 8.73e-46 152
MS.gene27833.t1 MTR_1g090100 42.788 208 116 2 6 211 3 209 9.88e-46 151
MS.gene27833.t1 MTR_7g065700 42.927 205 110 4 4 207 6 204 2.30e-45 150
MS.gene27833.t1 MTR_2g070130 40.488 205 118 3 5 208 4 205 4.48e-45 150
MS.gene27833.t1 MTR_5g037380 38.182 220 127 4 1 212 1 219 1.68e-44 149
MS.gene27833.t1 MTR_2g070210 44.385 187 97 5 5 187 4 187 4.52e-43 145
MS.gene27833.t1 MTR_3g467420 45.109 184 98 2 5 187 9 190 5.02e-43 145
MS.gene27833.t1 MTR_2g070060 41.935 186 103 4 4 187 3 185 5.63e-42 142
MS.gene27833.t1 MTR_8g061950 41.014 217 119 6 1 209 1 216 9.02e-42 142
MS.gene27833.t1 MTR_8g056940 42.021 188 106 2 4 190 3 188 1.82e-41 140
MS.gene27833.t1 MTR_4g124130 45.405 185 97 3 5 187 4 186 5.00e-41 139
MS.gene27833.t1 MTR_3g467430 43.085 188 104 2 1 187 5 190 2.55e-39 135
MS.gene27833.t1 MTR_2g070070 40.000 210 118 6 4 211 3 206 4.06e-37 129
MS.gene27833.t1 MTR_2g070110 41.622 185 104 3 4 187 3 184 1.30e-36 128
MS.gene27833.t1 MTR_5g076900 39.037 187 111 2 2 187 3 187 2.12e-36 127
MS.gene27833.t1 MTR_0186s0030 50.000 130 64 1 8 136 7 136 2.72e-33 117
MS.gene27833.t1 MTR_2g072120 48.649 74 34 3 48 118 1 73 2.41e-17 73.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene27833.t1 AT2G29420 44.037 218 121 1 3 220 7 223 6.97e-64 198
MS.gene27833.t1 AT2G29460 46.188 223 116 3 2 222 4 224 1.91e-62 194
MS.gene27833.t1 AT2G29490 48.571 210 104 3 2 209 4 211 5.50e-62 193
MS.gene27833.t1 AT2G29480 45.740 223 117 3 2 222 4 224 5.55e-62 193
MS.gene27833.t1 AT2G29450 46.847 222 113 4 4 222 5 224 1.41e-60 189
MS.gene27833.t1 AT2G29440 45.740 223 117 3 2 222 3 223 6.97e-60 188
MS.gene27833.t1 AT3G09270 46.667 210 109 3 2 209 3 211 2.05e-58 184
MS.gene27833.t1 AT2G29470 45.498 211 110 4 2 209 4 212 2.02e-55 176
MS.gene27833.t1 AT1G17170 42.791 215 118 4 5 218 4 214 1.88e-49 161
MS.gene27833.t1 AT1G59670 43.662 213 111 5 4 208 5 216 1.24e-47 157
MS.gene27833.t1 AT1G17180 41.148 209 119 3 5 212 4 209 2.20e-47 156
MS.gene27833.t1 AT1G10370 42.081 221 120 4 1 214 1 220 4.49e-47 155
MS.gene27833.t1 AT1G59700 43.564 202 106 4 4 197 5 206 6.17e-46 152
MS.gene27833.t1 AT1G78370 39.806 206 120 3 8 212 7 209 1.64e-45 151
MS.gene27833.t1 AT1G17190 40.359 223 129 3 1 222 1 220 3.89e-45 150
MS.gene27833.t1 AT1G78380 42.000 200 103 3 4 202 3 190 4.89e-45 150
MS.gene27833.t1 AT1G78340 43.169 183 101 3 5 186 4 184 3.15e-44 147
MS.gene27833.t1 AT1G53680 43.617 188 101 3 3 187 5 190 2.84e-43 145
MS.gene27833.t1 AT1G74590 38.164 207 122 3 13 214 15 220 2.69e-42 143
MS.gene27833.t1 AT1G78360 39.908 218 126 5 5 220 4 218 8.03e-42 141
MS.gene27833.t1 AT1G78320 38.426 216 127 4 4 216 3 215 9.85e-42 141
MS.gene27833.t1 AT3G43800 41.627 209 115 4 1 204 1 207 1.88e-41 141
MS.gene27833.t1 AT1G27130 37.500 224 131 6 2 217 3 225 2.05e-40 138
MS.gene27833.t1 AT5G62480 37.037 216 125 4 14 220 17 230 3.73e-40 138
MS.gene27833.t1 AT1G10360 38.725 204 118 3 1 197 1 204 2.75e-39 135
MS.gene27833.t1 AT1G69920 37.668 223 126 7 3 215 32 251 1.37e-38 134
MS.gene27833.t1 AT1G27140 35.841 226 135 5 2 218 3 227 7.76e-38 132
MS.gene27833.t1 AT1G69930 33.784 222 140 4 2 217 9 229 1.01e-37 131
MS.gene27833.t1 AT1G78320 32.558 215 114 4 4 216 3 188 6.41e-29 107
MS.gene27833.t1 AT5G62480 29.767 215 116 4 14 220 17 204 1.93e-25 99.4
MS.gene27833.t1 AT5G62480 29.767 215 115 4 14 220 17 203 3.56e-25 98.6

Find 59 sgRNAs with CRISPR-Local

Find 89 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCCAATTTGGGAAGAAAT+TGG 0.111299 4.3:-13501728 MS.gene27833:CDS
GTGACTCTGCAATTGATTTC+TGG 0.157766 4.3:+13502857 None:intergenic
AAAGTTAGAAGAGGAGATAA+AGG 0.273945 4.3:-13501819 MS.gene27833:CDS
GACCCAATTTCTTCCCAAAT+TGG 0.274164 4.3:+13501725 None:intergenic
ATAAAGGGAAAGAAATTCTT+TGG 0.305857 4.3:-13501803 MS.gene27833:CDS
AAAGTTCCGGTTCTTGTTCA+TGG 0.322486 4.3:-13502880 MS.gene27833:CDS
AAAGATCTCAGGCTCGCTTT+TGG 0.326368 4.3:-13502768 MS.gene27833:CDS
TATAGCTTGCGCTGGGTTCA+TGG 0.334296 4.3:-13501907 MS.gene27833:intron
AATGTCCTTCCATCTCTTCA+TGG 0.338522 4.3:-13501679 MS.gene27833:CDS
AGTTAAGCAGCTTCACATCT+TGG 0.361900 4.3:+13503031 None:intergenic
ACCGGAACTTTCTTATGAAT+CGG 0.380626 4.3:+13502892 None:intergenic
TTCCAATTTGGGAAGAAATT+GGG 0.398944 4.3:-13501727 MS.gene27833:CDS
CCCGATTCATAAGAAAGTTC+CGG 0.414826 4.3:-13502893 MS.gene27833:CDS
TTATTGCCACCGTCGCATAA+AGG 0.420018 4.3:-13501588 MS.gene27833:CDS
ACCTTGATCTTGCTCTTGGA+TGG 0.423990 4.3:-13501763 MS.gene27833:CDS
TAAAGAATCATTTCATCCCT+TGG 0.429286 4.3:+13501608 None:intergenic
CCGGAACTTTCTTATGAATC+GGG 0.433313 4.3:+13502893 None:intergenic
TTCTGGCCATGAACAAGAAC+CGG 0.434336 4.3:+13502874 None:intergenic
TGGATTGCATTGATTAAGAA+AGG 0.435401 4.3:-13501887 MS.gene27833:CDS
GGCTAAGTTATCTGATGAAA+AGG 0.437582 4.3:-13502746 MS.gene27833:intron
CATTCAACTCTACGACCAAC+TGG 0.446242 4.3:+13502997 None:intergenic
GGGTACCTTGATCTTGCTCT+TGG 0.453072 4.3:-13501767 MS.gene27833:CDS
TCTTTGGAGGGGACACTATC+GGG 0.454808 4.3:-13501787 MS.gene27833:CDS
TAAATTATTATAGCTTGCGC+TGG 0.466026 4.3:-13501915 MS.gene27833:intron
TGATTAAGAAAGGTGATGAA+TGG 0.474122 4.3:-13501877 MS.gene27833:CDS
AAAGGAGGCAAGAGAAATCA+TGG 0.475218 4.3:-13501843 MS.gene27833:CDS
TTCTTTGGAGGGGACACTAT+CGG 0.475345 4.3:-13501788 MS.gene27833:CDS
GATTAAGAAAGGTGATGAAT+GGG 0.480475 4.3:-13501876 MS.gene27833:CDS
AAGTTAGAAGAGGAGATAAA+GGG 0.491500 4.3:-13501818 MS.gene27833:CDS
GAAAGGTGATGAATGGGAAA+AGG 0.495659 4.3:-13501870 MS.gene27833:CDS
TGAGATCTTTGATAAGGATC+AGG 0.498359 4.3:+13502781 None:intergenic
AGTTGGTCGTAGAGTTGAAT+GGG 0.508405 4.3:-13502995 MS.gene27833:CDS
CAGTTGGTCGTAGAGTTGAA+TGG 0.517051 4.3:-13502996 MS.gene27833:CDS
TGATCCTTATCAAAGATCTC+AGG 0.520135 4.3:-13502779 MS.gene27833:CDS
CGAGCCTGAGATCTTTGATA+AGG 0.520914 4.3:+13502775 None:intergenic
AAACACTCCTTGATGATGAT+AGG 0.524604 4.3:+13501635 None:intergenic
AATCATGGAAAAGTTAGAAG+AGG 0.531445 4.3:-13501828 MS.gene27833:CDS
AGGGAAAGAAATTCTTTGGA+GGG 0.536580 4.3:-13501799 MS.gene27833:CDS
ATTGATCTTCCATGAAGAGA+TGG 0.543546 4.3:+13501670 None:intergenic
TGAATGGGAAAAGGCTCTAA+AGG 0.545680 4.3:-13501861 MS.gene27833:CDS
TCCATCCAAGAGCAAGATCA+AGG 0.557485 4.3:+13501762 None:intergenic
TAAGGATCAGGAGGCAGCAA+TGG 0.562517 4.3:+13502793 None:intergenic
CAAGGAGTGTTTGCCACCAA+GGG 0.564625 4.3:-13501624 MS.gene27833:CDS
TGAATGGGCTCTAAAACTCA+AGG 0.568264 4.3:-13502980 MS.gene27833:CDS
TCAAGGAGTGTTTGCCACCA+AGG 0.571195 4.3:-13501625 MS.gene27833:CDS
ACTCCTTGATGATGATAGGA+TGG 0.572678 4.3:+13501639 None:intergenic
TTGAATACATTGATGAAACA+TGG 0.575829 4.3:-13502825 MS.gene27833:CDS
AAGGGAAAGAAATTCTTTGG+AGG 0.576725 4.3:-13501800 MS.gene27833:CDS
GAGCCATCCTATCATCATCA+AGG 0.581782 4.3:-13501642 MS.gene27833:CDS
AAATTATTATAGCTTGCGCT+GGG 0.589664 4.3:-13501914 MS.gene27833:intron
AAGAATACTCCTTTATGCGA+CGG 0.595491 4.3:+13501579 None:intergenic
GGGAAAGAAATTCTTTGGAG+GGG 0.609810 4.3:-13501798 MS.gene27833:CDS
ATCTTCCATGAAGAGATGGA+AGG 0.621011 4.3:+13501674 None:intergenic
AGAATCATTTCATCCCTTGG+TGG 0.643379 4.3:+13501611 None:intergenic
GAATGGGCTCTAAAACTCAA+GGG 0.646090 4.3:-13502979 MS.gene27833:CDS
GATCTTTGATAAGGATCAGG+AGG 0.658191 4.3:+13502784 None:intergenic
ATGGGAAAAGGCTCTAAAGG+AGG 0.677413 4.3:-13501858 MS.gene27833:CDS
AATACTCCTTTATGCGACGG+TGG 0.688837 4.3:+13501582 None:intergenic
GAGTATTCTTCAACTCATCG+TGG 0.696267 4.3:-13501566 MS.gene27833:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCAATATAAAACTATTTTAA+AGG + chr4.3:13502464-13502483 None:intergenic 10.0%
!! TAATTTACACATACAAAAAT+AGG + chr4.3:13502673-13502692 None:intergenic 15.0%
!!! AATAATTGTTTTATGAACTT+AGG - chr4.3:13502071-13502090 MS.gene27833:intron 15.0%
!! TATCTCTTGAATTTATTAGA+TGG + chr4.3:13502255-13502274 None:intergenic 20.0%
!! TATGTTGTTCAAATTTAACT+AGG - chr4.3:13501901-13501920 MS.gene27833:CDS 20.0%
!!! AAAATTATGTTTCCTTTTTG+AGG - chr4.3:13501970-13501989 MS.gene27833:intron 20.0%
! AAAATATTCTTGCCTCAAAA+AGG + chr4.3:13501985-13502004 None:intergenic 25.0%
! AAATACTACGTTTCTTTCAA+AGG - chr4.3:13501941-13501960 MS.gene27833:intron 25.0%
! ATAAAGGGAAAGAAATTCTT+TGG - chr4.3:13502798-13502817 MS.gene27833:CDS 25.0%
! ATTACTTGAGTACAATTGTT+TGG - chr4.3:13502126-13502145 MS.gene27833:intron 25.0%
! TTGAATACATTGATGAAACA+TGG - chr4.3:13501776-13501795 MS.gene27833:CDS 25.0%
!!! TTGAGGCAAGAATATTTTTT+TGG - chr4.3:13501987-13502006 MS.gene27833:intron 25.0%
!!! TTTTTTTGGTGTTAATCATC+CGG - chr4.3:13502001-13502020 MS.gene27833:intron 25.0%
AAAGTTAGAAGAGGAGATAA+AGG - chr4.3:13502782-13502801 MS.gene27833:CDS 30.0%
AAGTTAGAAGAGGAGATAAA+GGG - chr4.3:13502783-13502802 MS.gene27833:CDS 30.0%
AATCATGGAAAAGTTAGAAG+AGG - chr4.3:13502773-13502792 MS.gene27833:CDS 30.0%
ACCGTTTCTATCAACATATT+AGG + chr4.3:13502523-13502542 None:intergenic 30.0%
ATTTAACTAGGCTTATTCTG+AGG - chr4.3:13501913-13501932 MS.gene27833:intron 30.0%
CATGATCAATATGTGTTTAG+TGG - chr4.3:13502098-13502117 MS.gene27833:intron 30.0%
GATGTTAATTATTCCATTCC+AGG - chr4.3:13502344-13502363 MS.gene27833:intron 30.0%
GATTAAGAAAGGTGATGAAT+GGG - chr4.3:13502725-13502744 MS.gene27833:intron 30.0%
TAAAGAATCATTTCATCCCT+TGG + chr4.3:13502996-13503015 None:intergenic 30.0%
TGATTAAGAAAGGTGATGAA+TGG - chr4.3:13502724-13502743 MS.gene27833:intron 30.0%
TGTTAATCATCCGGTTAATA+GGG - chr4.3:13502010-13502029 MS.gene27833:intron 30.0%
TTCCAATTTGGGAAGAAATT+GGG - chr4.3:13502874-13502893 MS.gene27833:CDS 30.0%
! AAATTATTATAGCTTGCGCT+GGG - chr4.3:13502687-13502706 MS.gene27833:intron 30.0%
! AACTTTTTATTGAGTCCAGT+TGG - chr4.3:13501589-13501608 MS.gene27833:CDS 30.0%
! GCCTAATATGTTGATAGAAA+CGG - chr4.3:13502519-13502538 MS.gene27833:intron 30.0%
! TAAATTATTATAGCTTGCGC+TGG - chr4.3:13502686-13502705 MS.gene27833:intron 30.0%
!! AGATGGAAGGACATTTTAAT+GGG + chr4.3:13502917-13502936 None:intergenic 30.0%
!! CACTTGTTTTCTTCCAATTT+GGG - chr4.3:13502863-13502882 MS.gene27833:CDS 30.0%
!! TCACTTGTTTTCTTCCAATT+TGG - chr4.3:13502862-13502881 MS.gene27833:CDS 30.0%
!! TGGATTGCATTGATTAAGAA+AGG - chr4.3:13502714-13502733 MS.gene27833:intron 30.0%
AAGAATACTCCTTTATGCGA+CGG + chr4.3:13503025-13503044 None:intergenic 35.0%
AAGGGAAAGAAATTCTTTGG+AGG - chr4.3:13502801-13502820 MS.gene27833:CDS 35.0%
ACAATACTTGAATGTATGCC+TGG + chr4.3:13502365-13502384 None:intergenic 35.0%
ACCGGAACTTTCTTATGAAT+CGG + chr4.3:13501712-13501731 None:intergenic 35.0%
AGGGAAAGAAATTCTTTGGA+GGG - chr4.3:13502802-13502821 MS.gene27833:CDS 35.0%
ATTGATCTTCCATGAAGAGA+TGG + chr4.3:13502934-13502953 None:intergenic 35.0%
CTTCCAATTTGGGAAGAAAT+TGG - chr4.3:13502873-13502892 MS.gene27833:CDS 35.0%
GGCTAAGTTATCTGATGAAA+AGG - chr4.3:13501855-13501874 MS.gene27833:CDS 35.0%
GTGTTAATCATCCGGTTAAT+AGG - chr4.3:13502009-13502028 MS.gene27833:intron 35.0%
GTTAATCATCCGGTTAATAG+GGG - chr4.3:13502011-13502030 MS.gene27833:intron 35.0%
TGAGATCTTTGATAAGGATC+AGG + chr4.3:13501823-13501842 None:intergenic 35.0%
TGATCCTTATCAAAGATCTC+AGG - chr4.3:13501822-13501841 MS.gene27833:CDS 35.0%
! GAGATGGAAGGACATTTTAA+TGG + chr4.3:13502918-13502937 None:intergenic 35.0%
!! AAACACTCCTTGATGATGAT+AGG + chr4.3:13502969-13502988 None:intergenic 35.0%
AAAGGAGGCAAGAGAAATCA+TGG - chr4.3:13502758-13502777 MS.gene27833:CDS 40.0%
AAAGTTCCGGTTCTTGTTCA+TGG - chr4.3:13501721-13501740 MS.gene27833:CDS 40.0%
AATGTCCTTCCATCTCTTCA+TGG - chr4.3:13502922-13502941 MS.gene27833:CDS 40.0%
ACTTGAATGTATGCCTGGAA+TGG + chr4.3:13502360-13502379 None:intergenic 40.0%
AGAATCATTTCATCCCTTGG+TGG + chr4.3:13502993-13503012 None:intergenic 40.0%
AGTTAAGCAGCTTCACATCT+TGG + chr4.3:13501573-13501592 None:intergenic 40.0%
AGTTGGTCGTAGAGTTGAAT+GGG - chr4.3:13501606-13501625 MS.gene27833:CDS 40.0%
ATCTTCCATGAAGAGATGGA+AGG + chr4.3:13502930-13502949 None:intergenic 40.0%
CCCGATTCATAAGAAAGTTC+CGG - chr4.3:13501708-13501727 MS.gene27833:CDS 40.0%
CCGGAACTTTCTTATGAATC+GGG + chr4.3:13501711-13501730 None:intergenic 40.0%
GAAAGGTGATGAATGGGAAA+AGG - chr4.3:13502731-13502750 MS.gene27833:intron 40.0%
GACCCAATTTCTTCCCAAAT+TGG + chr4.3:13502879-13502898 None:intergenic 40.0%
GAGTATTCTTCAACTCATCG+TGG - chr4.3:13503035-13503054 MS.gene27833:CDS 40.0%
GATCTTTGATAAGGATCAGG+AGG + chr4.3:13501820-13501839 None:intergenic 40.0%
! GGGAAAGAAATTCTTTGGAG+GGG - chr4.3:13502803-13502822 MS.gene27833:CDS 40.0%
! GTGACTCTGCAATTGATTTC+TGG + chr4.3:13501747-13501766 None:intergenic 40.0%
! TGAATGGGAAAAGGCTCTAA+AGG - chr4.3:13502740-13502759 MS.gene27833:intron 40.0%
!! ACTCCTTGATGATGATAGGA+TGG + chr4.3:13502965-13502984 None:intergenic 40.0%
!! GAATGGGCTCTAAAACTCAA+GGG - chr4.3:13501622-13501641 MS.gene27833:CDS 40.0%
!! TGAATGGGCTCTAAAACTCA+AGG - chr4.3:13501621-13501640 MS.gene27833:CDS 40.0%
AATACTCCTTTATGCGACGG+TGG + chr4.3:13503022-13503041 None:intergenic 45.0%
ACCTTGATCTTGCTCTTGGA+TGG - chr4.3:13502838-13502857 MS.gene27833:CDS 45.0%
ACTCTCCTTCCCCTATTAAC+CGG + chr4.3:13502023-13502042 None:intergenic 45.0%
ATCATCCGGTTAATAGGGGA+AGG - chr4.3:13502015-13502034 MS.gene27833:intron 45.0%
CAGTTGGTCGTAGAGTTGAA+TGG - chr4.3:13501605-13501624 MS.gene27833:CDS 45.0%
CATTCAACTCTACGACCAAC+TGG + chr4.3:13501607-13501626 None:intergenic 45.0%
CGAGCCTGAGATCTTTGATA+AGG + chr4.3:13501829-13501848 None:intergenic 45.0%
GAGCCATCCTATCATCATCA+AGG - chr4.3:13502959-13502978 MS.gene27833:CDS 45.0%
TCCATCCAAGAGCAAGATCA+AGG + chr4.3:13502842-13502861 None:intergenic 45.0%
TTATTGCCACCGTCGCATAA+AGG - chr4.3:13503013-13503032 MS.gene27833:CDS 45.0%
TTCTGGCCATGAACAAGAAC+CGG + chr4.3:13501730-13501749 None:intergenic 45.0%
! AAAGATCTCAGGCTCGCTTT+TGG - chr4.3:13501833-13501852 MS.gene27833:CDS 45.0%
! TTCTTTGGAGGGGACACTAT+CGG - chr4.3:13502813-13502832 MS.gene27833:CDS 45.0%
!! AAGATCTCAGGCTCGCTTTT+GGG - chr4.3:13501834-13501853 MS.gene27833:CDS 45.0%
!! ATGGGAAAAGGCTCTAAAGG+AGG - chr4.3:13502743-13502762 MS.gene27833:intron 45.0%
GGAAGGAGAGTTCTCTCGAA+AGG - chr4.3:13502032-13502051 MS.gene27833:intron 50.0%
GGGTACCTTGATCTTGCTCT+TGG - chr4.3:13502834-13502853 MS.gene27833:CDS 50.0%
TAAGGATCAGGAGGCAGCAA+TGG + chr4.3:13501811-13501830 None:intergenic 50.0%
! TATAGCTTGCGCTGGGTTCA+TGG - chr4.3:13502694-13502713 MS.gene27833:intron 50.0%
! TCTTTGGAGGGGACACTATC+GGG - chr4.3:13502814-13502833 MS.gene27833:CDS 50.0%
!! CAAGGAGTGTTTGCCACCAA+GGG - chr4.3:13502977-13502996 MS.gene27833:CDS 50.0%
!! TCAAGGAGTGTTTGCCACCA+AGG - chr4.3:13502976-13502995 MS.gene27833:CDS 50.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 13501562 13503061 13501562 ID=MS.gene27833
chr4.3 mRNA 13501562 13503061 13501562 ID=MS.gene27833.t1;Parent=MS.gene27833
chr4.3 exon 13502747 13503061 13502747 ID=MS.gene27833.t1.exon1;Parent=MS.gene27833.t1
chr4.3 CDS 13502747 13503061 13502747 ID=cds.MS.gene27833.t1;Parent=MS.gene27833.t1
chr4.3 exon 13501562 13501924 13501562 ID=MS.gene27833.t1.exon2;Parent=MS.gene27833.t1
chr4.3 CDS 13501562 13501924 13501562 ID=cds.MS.gene27833.t1;Parent=MS.gene27833.t1
Gene Sequence

>MS.gene27833

ATGAGAAACCAAGATGTGAAGCTGCTTAACTTTTTATTGAGTCCAGTTGGTCGTAGAGTTGAATGGGCTCTAAAACTCAAGGGTGTTGAGTATGATTATATAGAAGAAGATATCTTCAACAAAAGTAGTCTTCTTTTCGAATTGAACCCGATTCATAAGAAAGTTCCGGTTCTTGTTCATGGCCAGAAATCAATTGCAGAGTCACTAATTATTCTTGAATACATTGATGAAACATGGAAGCAATATCCATTGCTGCCTCCTGATCCTTATCAAAGATCTCAGGCTCGCTTTTGGGCTAAGTTATCTGATGAAAAGGTGATAGTTTATTTATTTTTTCTTTATGTTGTTCAAATTTAACTAGGCTTATTCTGAGGTTATAAAATACTACGTTTCTTTCAAAGGAAAAAAAAAATTATGTTTCCTTTTTGAGGCAAGAATATTTTTTTGGTGTTAATCATCCGGTTAATAGGGGAAGGAGAGTTCTCTCGAAAGGTAAGTAAATTCTAGTCAATAATTGTTTTATGAACTTAGGTTTTCATGATCAATATGTGTTTAGTGGAGCTCATTACTTGAGTACAATTGTTTGGTTAGAGACAAGAATATTTAATGTTACATAGAAGATATACACAAATTTTAATTTGAAGTTATATAATTCTATCAATTTTTTTAATAACATAACTTAAAAAACAGCCATCTAATAAATTCAAGAGATACTTTAATTATGAGAAAATATATTAAAAATAAAATATAAATATAGAAGATTTTAATTTTTGTATATTGTCGATGTTAATTATTCCATTCCAGGCATACATTCAAGTATTGTTACATTATTTAAAGAATATGACAAATTATATAGTTTTAAACACGATACGCAATGCAATGATATTCAATTGAATTTACCTTTAAAATAGTTTTATATTGACTATGCATACAAGTTAAACTCAATATAGAATAGTTGCCTAATATGTTGATAGAAACGGTACATTATTAAAATTGCATTGAAATGACTGTGCATGTTATTTCTTTTTTTAGTTTTGATTTGTACGAACTTTATTCGATTGAATGACATATAATTATTCAAATAATTCAATGACTTATATTTCAAAAGCCTATTTTTGTATGTGTAAATTATTATAGCTTGCGCTGGGTTCATGGATTGCATTGATTAAGAAAGGTGATGAATGGGAAAAGGCTCTAAAGGAGGCAAGAGAAATCATGGAAAAGTTAGAAGAGGAGATAAAGGGAAAGAAATTCTTTGGAGGGGACACTATCGGGTACCTTGATCTTGCTCTTGGATGGATCACTTGTTTTCTTCCAATTTGGGAAGAAATTGGGTCAACGCAGATACTTGACCCATTAAAATGTCCTTCCATCTCTTCATGGAAGATCAATTTTCTGAGCCATCCTATCATCATCAAGGAGTGTTTGCCACCAAGGGATGAAATGATTCTTTATTGCCACCGTCGCATAAAGGAGTATTCTTCAACTCATCGTGGTTAA
Protein sequence

>MS.gene27833.t1

MRNQDVKLLNFLLSPVGRRVEWALKLKGVEYDYIEEDIFNKSSLLFELNPIHKKVPVLVHGQKSIAESLIILEYIDETWKQYPLLPPDPYQRSQARFWAKLSDEKLALGSWIALIKKGDEWEKALKEAREIMEKLEEEIKGKKFFGGDTIGYLDLALGWITCFLPIWEEIGSTQILDPLKCPSISSWKINFLSHPIIIKECLPPRDEMILYCHRRIKEYSSTHRG