AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene27832

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene27832.t1 MTR_8g087410 95.536 224 9 1 1 224 2 224 3.00e-157 434
MS.gene27832.t1 MTR_8g087425 63.839 224 80 1 1 224 1 223 2.47e-95 278
MS.gene27832.t1 MTR_6g080440 52.885 208 95 2 5 211 3 208 1.26e-71 218
MS.gene27832.t1 MTR_7g065720 48.113 212 106 3 2 211 4 213 1.25e-63 197
MS.gene27832.t1 MTR_4g019780 49.048 210 106 1 2 211 5 213 1.92e-62 194
MS.gene27832.t1 MTR_7g065740 43.111 225 124 3 2 224 4 226 9.19e-62 192
MS.gene27832.t1 MTR_1g090150 46.330 218 113 3 4 219 2 217 6.97e-60 188
MS.gene27832.t1 MTR_3g099757 46.890 209 110 1 1 209 1 208 8.62e-60 187
MS.gene27832.t1 MTR_7g065590 45.370 216 115 3 1 215 3 216 1.30e-59 187
MS.gene27832.t1 MTR_4g019790 45.249 221 118 3 5 224 7 225 3.77e-59 186
MS.gene27832.t1 MTR_7g065660 44.186 215 116 4 3 215 4 216 1.48e-58 184
MS.gene27832.t1 MTR_7g065750 43.556 225 123 3 2 224 4 226 3.53e-58 183
MS.gene27832.t1 MTR_7g065600 46.512 215 112 3 2 215 4 216 1.61e-57 182
MS.gene27832.t1 MTR_1g115195 45.413 218 115 3 5 219 3 219 2.88e-56 178
MS.gene27832.t1 MTR_7g065630 41.892 222 122 4 4 224 24 239 9.07e-56 178
MS.gene27832.t1 MTR_7g065290 45.540 213 113 3 4 215 6 216 9.96e-56 177
MS.gene27832.t1 MTR_7g065230 44.091 220 115 4 4 222 6 218 2.83e-54 173
MS.gene27832.t1 MTR_1g090060 43.636 220 121 2 5 222 3 221 1.55e-53 172
MS.gene27832.t1 MTR_7g065265 44.037 218 117 5 4 219 6 220 4.90e-53 170
MS.gene27832.t1 MTR_7g065710 44.444 207 108 4 6 211 5 205 1.06e-52 169
MS.gene27832.t1 MTR_7g065270 43.318 217 120 3 4 219 6 220 2.71e-51 166
MS.gene27832.t1 MTR_7g065680 39.910 223 127 4 3 224 5 221 8.90e-51 164
MS.gene27832.t1 MTR_1g090070 42.791 215 119 3 1 212 5 218 1.11e-50 164
MS.gene27832.t1 MTR_5g040430 41.315 213 118 3 3 209 5 216 1.92e-50 164
MS.gene27832.t1 MTR_2g070150 45.098 204 108 3 5 207 4 204 2.70e-50 162
MS.gene27832.t1 MTR_7g065260 45.701 221 107 5 4 218 13 226 5.48e-50 163
MS.gene27832.t1 MTR_4g059730 43.172 227 111 5 1 218 1 218 9.86e-50 162
MS.gene27832.t1 MTR_7g065640 41.395 215 104 4 3 215 4 198 3.62e-49 160
MS.gene27832.t1 MTR_2g070120 48.370 184 92 2 5 187 4 185 1.77e-48 158
MS.gene27832.t1 MTR_2g070180 44.118 204 110 3 6 208 5 205 6.83e-48 157
MS.gene27832.t1 MTR_2g070200 39.815 216 126 3 5 218 4 217 6.00e-47 154
MS.gene27832.t1 MTR_2g070140 45.026 191 101 3 19 208 2 189 2.58e-46 152
MS.gene27832.t1 MTR_1g090090 40.278 216 126 2 5 218 3 217 7.58e-46 152
MS.gene27832.t1 MTR_1g090100 42.788 208 116 2 6 211 3 209 8.49e-46 152
MS.gene27832.t1 MTR_7g065700 42.927 205 110 4 4 207 6 204 2.67e-45 150
MS.gene27832.t1 MTR_2g070130 40.488 205 118 3 5 208 4 205 5.15e-45 149
MS.gene27832.t1 MTR_5g037380 38.182 220 127 4 1 212 1 219 1.74e-44 149
MS.gene27832.t1 MTR_2g070210 44.385 187 97 5 5 187 4 187 4.42e-43 145
MS.gene27832.t1 MTR_3g467420 45.109 184 98 2 5 187 9 190 4.97e-43 145
MS.gene27832.t1 MTR_2g070060 41.935 186 103 4 4 187 3 185 4.95e-42 142
MS.gene27832.t1 MTR_8g061950 41.014 217 119 6 1 209 1 216 9.42e-42 142
MS.gene27832.t1 MTR_8g056940 42.935 184 102 2 8 190 7 188 1.46e-41 140
MS.gene27832.t1 MTR_4g124130 45.405 185 97 3 5 187 4 186 4.12e-41 140
MS.gene27832.t1 MTR_3g467430 43.085 188 104 2 1 187 5 190 2.53e-39 135
MS.gene27832.t1 MTR_2g070070 40.000 210 118 6 4 211 3 206 3.73e-37 129
MS.gene27832.t1 MTR_2g070110 41.622 185 104 3 4 187 3 184 1.25e-36 128
MS.gene27832.t1 MTR_5g076900 39.037 187 111 2 2 187 3 187 1.97e-36 127
MS.gene27832.t1 MTR_0186s0030 50.000 130 64 1 8 136 7 136 2.40e-33 117
MS.gene27832.t1 MTR_2g072120 48.649 74 34 3 48 118 1 73 2.44e-17 73.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene27832.t1 AT2G29420 44.037 218 121 1 3 220 7 223 5.90e-64 198
MS.gene27832.t1 AT2G29460 46.188 223 116 3 2 222 4 224 1.69e-62 194
MS.gene27832.t1 AT2G29490 48.571 210 104 3 2 209 4 211 5.03e-62 193
MS.gene27832.t1 AT2G29480 45.740 223 117 3 2 222 4 224 5.24e-62 193
MS.gene27832.t1 AT2G29450 49.282 209 101 4 4 209 5 211 1.30e-60 189
MS.gene27832.t1 AT2G29440 45.740 223 117 3 2 222 3 223 7.19e-60 187
MS.gene27832.t1 AT3G09270 46.667 210 109 3 2 209 3 211 1.87e-58 184
MS.gene27832.t1 AT2G29470 45.498 211 110 4 2 209 4 212 1.59e-55 177
MS.gene27832.t1 AT1G17170 42.791 215 118 4 5 218 4 214 1.81e-49 161
MS.gene27832.t1 AT1G59670 43.662 213 111 5 4 208 5 216 1.02e-47 157
MS.gene27832.t1 AT1G17180 41.148 209 119 3 5 212 4 209 1.89e-47 156
MS.gene27832.t1 AT1G10370 42.081 221 120 4 1 214 1 220 4.21e-47 155
MS.gene27832.t1 AT1G59700 43.564 202 106 4 4 197 5 206 5.97e-46 152
MS.gene27832.t1 AT1G78370 39.806 206 120 3 8 212 7 209 1.49e-45 151
MS.gene27832.t1 AT1G17190 40.359 223 129 3 1 222 1 220 3.13e-45 150
MS.gene27832.t1 AT1G78380 42.000 200 103 3 4 202 3 190 5.00e-45 150
MS.gene27832.t1 AT1G78340 43.169 183 101 3 5 186 4 184 2.92e-44 147
MS.gene27832.t1 AT1G53680 43.617 188 101 3 3 187 5 190 2.97e-43 145
MS.gene27832.t1 AT1G74590 38.164 207 122 3 13 214 15 220 2.22e-42 143
MS.gene27832.t1 AT1G78360 39.908 218 126 5 5 220 4 218 7.13e-42 142
MS.gene27832.t1 AT1G78320 38.426 216 127 4 4 216 3 215 8.85e-42 141
MS.gene27832.t1 AT3G43800 41.627 209 115 4 1 204 1 207 1.72e-41 141
MS.gene27832.t1 AT1G27130 37.500 224 131 6 2 217 3 225 1.86e-40 138
MS.gene27832.t1 AT5G62480 37.037 216 125 4 14 220 17 230 3.50e-40 138
MS.gene27832.t1 AT1G10360 38.725 204 118 3 1 197 1 204 2.78e-39 135
MS.gene27832.t1 AT1G69920 37.668 223 126 7 3 215 32 251 1.23e-38 134
MS.gene27832.t1 AT1G27140 35.841 226 135 5 2 218 3 227 8.74e-38 132
MS.gene27832.t1 AT1G69930 33.784 222 140 4 2 217 9 229 9.16e-38 131
MS.gene27832.t1 AT1G78320 32.558 215 114 4 4 216 3 188 5.84e-29 107
MS.gene27832.t1 AT5G62480 29.767 215 116 4 14 220 17 204 1.84e-25 99.4
MS.gene27832.t1 AT5G62480 29.767 215 115 4 14 220 17 203 3.65e-25 98.6

Find 59 sgRNAs with CRISPR-Local

Find 88 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCCAATTTGGGAAGAAAT+TGG 0.111299 4.1:-13330891 MS.gene27832:CDS
GTGACTCTGCAATTGATTTC+TGG 0.157766 4.1:+13332020 None:intergenic
AAAGTTAGAAGAGGAGATAA+AGG 0.273945 4.1:-13330982 MS.gene27832:CDS
GACCCAATTTCTTCCCAAAT+TGG 0.274164 4.1:+13330888 None:intergenic
ATAAAGGGAAAGAAATTCTT+TGG 0.305857 4.1:-13330966 MS.gene27832:CDS
AAAGTTCCGGTTCTTGTTCA+TGG 0.322486 4.1:-13332043 MS.gene27832:CDS
AAAGATCTCAGGCTCGCTTT+TGG 0.326368 4.1:-13331931 MS.gene27832:CDS
TATAGCTTGCGCTGGGTTCA+TGG 0.334296 4.1:-13331070 MS.gene27832:intron
AATGTCCTTCCATCTCTTCA+TGG 0.338522 4.1:-13330842 MS.gene27832:CDS
AGTTAAGCAGCTTCACATCT+TGG 0.361900 4.1:+13332194 None:intergenic
ACCGGAACTTTCTTATGAAT+CGG 0.380626 4.1:+13332055 None:intergenic
TTCCAATTTGGGAAGAAATT+GGG 0.398944 4.1:-13330890 MS.gene27832:CDS
CCCGATTCATAAGAAAGTTC+CGG 0.414826 4.1:-13332056 MS.gene27832:CDS
TTATTGCCACCGTCGCATAA+AGG 0.420018 4.1:-13330751 MS.gene27832:CDS
ACCTTGATCTTGCTCTTGGA+TGG 0.423990 4.1:-13330926 MS.gene27832:CDS
TAAAGAATCATTTCATCCCT+TGG 0.429286 4.1:+13330771 None:intergenic
CCGGAACTTTCTTATGAATC+GGG 0.433313 4.1:+13332056 None:intergenic
TTCTGGCCATGAACAAGAAC+CGG 0.434336 4.1:+13332037 None:intergenic
TGGATTGCATTGATTAAGAA+AGG 0.435401 4.1:-13331050 MS.gene27832:CDS
GGCTAAGTTATCTGATGAAA+AGG 0.437582 4.1:-13331909 MS.gene27832:intron
CATTCAACTCTACGACCAAC+TGG 0.446242 4.1:+13332160 None:intergenic
GGGTACCTTGATCTTGCTCT+TGG 0.453072 4.1:-13330930 MS.gene27832:CDS
TCTTTGGAGGGGACACTATC+GGG 0.454808 4.1:-13330950 MS.gene27832:CDS
TAAATTATTATAGCTTGCGC+TGG 0.466026 4.1:-13331078 MS.gene27832:intron
TGATTAAGAAAGGTGATGAA+TGG 0.474122 4.1:-13331040 MS.gene27832:CDS
AAAGGAGGCAAGAGAAATCA+TGG 0.475218 4.1:-13331006 MS.gene27832:CDS
TTCTTTGGAGGGGACACTAT+CGG 0.475345 4.1:-13330951 MS.gene27832:CDS
GATTAAGAAAGGTGATGAAT+GGG 0.480475 4.1:-13331039 MS.gene27832:CDS
AAGTTAGAAGAGGAGATAAA+GGG 0.491500 4.1:-13330981 MS.gene27832:CDS
GAAAGGTGATGAATGGGAAA+AGG 0.495659 4.1:-13331033 MS.gene27832:CDS
TGAGATCTTTGATAAGGATC+AGG 0.498359 4.1:+13331944 None:intergenic
AGTTGGTCGTAGAGTTGAAT+GGG 0.508405 4.1:-13332158 MS.gene27832:CDS
CAGTTGGTCGTAGAGTTGAA+TGG 0.517051 4.1:-13332159 MS.gene27832:CDS
TGATCCTTATCAAAGATCTC+AGG 0.520135 4.1:-13331942 MS.gene27832:CDS
CGAGCCTGAGATCTTTGATA+AGG 0.520914 4.1:+13331938 None:intergenic
AAACACTCCTTGATGATGAT+AGG 0.524604 4.1:+13330798 None:intergenic
AATCATGGAAAAGTTAGAAG+AGG 0.531445 4.1:-13330991 MS.gene27832:CDS
AGGGAAAGAAATTCTTTGGA+GGG 0.536580 4.1:-13330962 MS.gene27832:CDS
ATTGATCTTCCATGAAGAGA+TGG 0.543546 4.1:+13330833 None:intergenic
TGAATGGGAAAAGGCTCTAA+AGG 0.545680 4.1:-13331024 MS.gene27832:CDS
TCCATCCAAGAGCAAGATCA+AGG 0.557485 4.1:+13330925 None:intergenic
TAAGGATCAGGAGGCAGCAA+TGG 0.562517 4.1:+13331956 None:intergenic
CAAGGAGTGTTTGCCACCAA+GGG 0.564625 4.1:-13330787 MS.gene27832:CDS
TGAATGGGCTCTAAAACTCA+AGG 0.568264 4.1:-13332143 MS.gene27832:CDS
TCAAGGAGTGTTTGCCACCA+AGG 0.571195 4.1:-13330788 MS.gene27832:CDS
ACTCCTTGATGATGATAGGA+TGG 0.572678 4.1:+13330802 None:intergenic
TTGAATACATTGATGAAACA+TGG 0.575829 4.1:-13331988 MS.gene27832:CDS
AAGGGAAAGAAATTCTTTGG+AGG 0.576725 4.1:-13330963 MS.gene27832:CDS
GAGCCATCCTATCATCATCA+AGG 0.581782 4.1:-13330805 MS.gene27832:CDS
AAATTATTATAGCTTGCGCT+GGG 0.589664 4.1:-13331077 MS.gene27832:intron
AAGAATACTCCTTTATGCGA+CGG 0.595491 4.1:+13330742 None:intergenic
GGGAAAGAAATTCTTTGGAG+GGG 0.609810 4.1:-13330961 MS.gene27832:CDS
ATCTTCCATGAAGAGATGGA+AGG 0.621011 4.1:+13330837 None:intergenic
AGAATCATTTCATCCCTTGG+TGG 0.643379 4.1:+13330774 None:intergenic
GAATGGGCTCTAAAACTCAA+GGG 0.646090 4.1:-13332142 MS.gene27832:CDS
GATCTTTGATAAGGATCAGG+AGG 0.658191 4.1:+13331947 None:intergenic
ATGGGAAAAGGCTCTAAAGG+AGG 0.677413 4.1:-13331021 MS.gene27832:CDS
AATACTCCTTTATGCGACGG+TGG 0.688837 4.1:+13330745 None:intergenic
GAGTATTCTTCAACTCATCG+TGG 0.696267 4.1:-13330729 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCAATATAAAACTATTTTAA+AGG + chr4.1:13331632-13331651 None:intergenic 10.0%
!! TAATTTACACATACAAAAAT+AGG + chr4.1:13331841-13331860 None:intergenic 15.0%
!!! AATAATTGTTTTATGAACTT+AGG - chr4.1:13331239-13331258 MS.gene27832:intron 15.0%
!! TATCTCTTGAATTTATTAGA+TGG + chr4.1:13331423-13331442 None:intergenic 20.0%
!! TATGTTGTTCAAATTTAACT+AGG - chr4.1:13331069-13331088 MS.gene27832:intron 20.0%
!!! AAAATTATGTTTCCTTTTTG+AGG - chr4.1:13331138-13331157 MS.gene27832:intron 20.0%
! AAAATATTCTTGCCTCAAAA+AGG + chr4.1:13331153-13331172 None:intergenic 25.0%
! AAATACTACGTTTCTTTCAA+AGG - chr4.1:13331109-13331128 MS.gene27832:intron 25.0%
! ATAAAGGGAAAGAAATTCTT+TGG - chr4.1:13331966-13331985 MS.gene27832:CDS 25.0%
! ATTACTTGAGTACAATTGTT+TGG - chr4.1:13331294-13331313 MS.gene27832:intron 25.0%
! TTGAATACATTGATGAAACA+TGG - chr4.1:13330944-13330963 MS.gene27832:CDS 25.0%
!!! TTGAGGCAAGAATATTTTTT+TGG - chr4.1:13331155-13331174 MS.gene27832:intron 25.0%
!!! TTTTTTTGGTGTTAATCATC+CGG - chr4.1:13331169-13331188 MS.gene27832:intron 25.0%
AAAGTTAGAAGAGGAGATAA+AGG - chr4.1:13331950-13331969 MS.gene27832:CDS 30.0%
AAGTTAGAAGAGGAGATAAA+GGG - chr4.1:13331951-13331970 MS.gene27832:CDS 30.0%
AATCATGGAAAAGTTAGAAG+AGG - chr4.1:13331941-13331960 MS.gene27832:CDS 30.0%
ACCGTTTCTATCAACATATT+AGG + chr4.1:13331691-13331710 None:intergenic 30.0%
ATTTAACTAGGCTTATTCTG+AGG - chr4.1:13331081-13331100 MS.gene27832:intron 30.0%
CATGATCAATATGTGTTTAG+TGG - chr4.1:13331266-13331285 MS.gene27832:intron 30.0%
GATGTTAATTATTCCATTCC+AGG - chr4.1:13331512-13331531 MS.gene27832:intron 30.0%
GATTAAGAAAGGTGATGAAT+GGG - chr4.1:13331893-13331912 MS.gene27832:intron 30.0%
TAAAGAATCATTTCATCCCT+TGG + chr4.1:13332164-13332183 None:intergenic 30.0%
TGATTAAGAAAGGTGATGAA+TGG - chr4.1:13331892-13331911 MS.gene27832:intron 30.0%
TGTTAATCATCCGGTTAATA+GGG - chr4.1:13331178-13331197 MS.gene27832:intron 30.0%
TTCCAATTTGGGAAGAAATT+GGG - chr4.1:13332042-13332061 MS.gene27832:CDS 30.0%
! AAATTATTATAGCTTGCGCT+GGG - chr4.1:13331855-13331874 MS.gene27832:intron 30.0%
! AACTTTTTATTGAGTCCAGT+TGG - chr4.1:13330757-13330776 MS.gene27832:CDS 30.0%
! GCCTAATATGTTGATAGAAA+CGG - chr4.1:13331687-13331706 MS.gene27832:intron 30.0%
! TAAATTATTATAGCTTGCGC+TGG - chr4.1:13331854-13331873 MS.gene27832:intron 30.0%
!! AGATGGAAGGACATTTTAAT+GGG + chr4.1:13332085-13332104 None:intergenic 30.0%
!! CACTTGTTTTCTTCCAATTT+GGG - chr4.1:13332031-13332050 MS.gene27832:CDS 30.0%
!! TCACTTGTTTTCTTCCAATT+TGG - chr4.1:13332030-13332049 MS.gene27832:CDS 30.0%
!! TGGATTGCATTGATTAAGAA+AGG - chr4.1:13331882-13331901 MS.gene27832:intron 30.0%
AAGAATACTCCTTTATGCGA+CGG + chr4.1:13332193-13332212 None:intergenic 35.0%
AAGGGAAAGAAATTCTTTGG+AGG - chr4.1:13331969-13331988 MS.gene27832:CDS 35.0%
ACAATACTTGAATGTATGCC+TGG + chr4.1:13331533-13331552 None:intergenic 35.0%
ACCGGAACTTTCTTATGAAT+CGG + chr4.1:13330880-13330899 None:intergenic 35.0%
AGGGAAAGAAATTCTTTGGA+GGG - chr4.1:13331970-13331989 MS.gene27832:CDS 35.0%
ATTGATCTTCCATGAAGAGA+TGG + chr4.1:13332102-13332121 None:intergenic 35.0%
CTTCCAATTTGGGAAGAAAT+TGG - chr4.1:13332041-13332060 MS.gene27832:CDS 35.0%
GGCTAAGTTATCTGATGAAA+AGG - chr4.1:13331023-13331042 MS.gene27832:CDS 35.0%
GTGTTAATCATCCGGTTAAT+AGG - chr4.1:13331177-13331196 MS.gene27832:intron 35.0%
GTTAATCATCCGGTTAATAG+GGG - chr4.1:13331179-13331198 MS.gene27832:intron 35.0%
TGAGATCTTTGATAAGGATC+AGG + chr4.1:13330991-13331010 None:intergenic 35.0%
TGATCCTTATCAAAGATCTC+AGG - chr4.1:13330990-13331009 MS.gene27832:CDS 35.0%
! GAGATGGAAGGACATTTTAA+TGG + chr4.1:13332086-13332105 None:intergenic 35.0%
!! AAACACTCCTTGATGATGAT+AGG + chr4.1:13332137-13332156 None:intergenic 35.0%
AAAGGAGGCAAGAGAAATCA+TGG - chr4.1:13331926-13331945 MS.gene27832:CDS 40.0%
AAAGTTCCGGTTCTTGTTCA+TGG - chr4.1:13330889-13330908 MS.gene27832:CDS 40.0%
AATGTCCTTCCATCTCTTCA+TGG - chr4.1:13332090-13332109 MS.gene27832:CDS 40.0%
ACTTGAATGTATGCCTGGAA+TGG + chr4.1:13331528-13331547 None:intergenic 40.0%
AGAATCATTTCATCCCTTGG+TGG + chr4.1:13332161-13332180 None:intergenic 40.0%
AGTTAAGCAGCTTCACATCT+TGG + chr4.1:13330741-13330760 None:intergenic 40.0%
AGTTGGTCGTAGAGTTGAAT+GGG - chr4.1:13330774-13330793 MS.gene27832:CDS 40.0%
ATCTTCCATGAAGAGATGGA+AGG + chr4.1:13332098-13332117 None:intergenic 40.0%
CCCGATTCATAAGAAAGTTC+CGG - chr4.1:13330876-13330895 MS.gene27832:CDS 40.0%
CCGGAACTTTCTTATGAATC+GGG + chr4.1:13330879-13330898 None:intergenic 40.0%
GAAAGGTGATGAATGGGAAA+AGG - chr4.1:13331899-13331918 MS.gene27832:intron 40.0%
GACCCAATTTCTTCCCAAAT+TGG + chr4.1:13332047-13332066 None:intergenic 40.0%
GATCTTTGATAAGGATCAGG+AGG + chr4.1:13330988-13331007 None:intergenic 40.0%
! GGGAAAGAAATTCTTTGGAG+GGG - chr4.1:13331971-13331990 MS.gene27832:CDS 40.0%
! GTGACTCTGCAATTGATTTC+TGG + chr4.1:13330915-13330934 None:intergenic 40.0%
! TGAATGGGAAAAGGCTCTAA+AGG - chr4.1:13331908-13331927 MS.gene27832:intron 40.0%
!! ACTCCTTGATGATGATAGGA+TGG + chr4.1:13332133-13332152 None:intergenic 40.0%
!! GAATGGGCTCTAAAACTCAA+GGG - chr4.1:13330790-13330809 MS.gene27832:CDS 40.0%
!! TGAATGGGCTCTAAAACTCA+AGG - chr4.1:13330789-13330808 MS.gene27832:CDS 40.0%
AATACTCCTTTATGCGACGG+TGG + chr4.1:13332190-13332209 None:intergenic 45.0%
ACCTTGATCTTGCTCTTGGA+TGG - chr4.1:13332006-13332025 MS.gene27832:CDS 45.0%
ACTCTCCTTCCCCTATTAAC+CGG + chr4.1:13331191-13331210 None:intergenic 45.0%
ATCATCCGGTTAATAGGGGA+AGG - chr4.1:13331183-13331202 MS.gene27832:intron 45.0%
CAGTTGGTCGTAGAGTTGAA+TGG - chr4.1:13330773-13330792 MS.gene27832:CDS 45.0%
CATTCAACTCTACGACCAAC+TGG + chr4.1:13330775-13330794 None:intergenic 45.0%
CGAGCCTGAGATCTTTGATA+AGG + chr4.1:13330997-13331016 None:intergenic 45.0%
GAGCCATCCTATCATCATCA+AGG - chr4.1:13332127-13332146 MS.gene27832:CDS 45.0%
TCCATCCAAGAGCAAGATCA+AGG + chr4.1:13332010-13332029 None:intergenic 45.0%
TTATTGCCACCGTCGCATAA+AGG - chr4.1:13332181-13332200 MS.gene27832:CDS 45.0%
TTCTGGCCATGAACAAGAAC+CGG + chr4.1:13330898-13330917 None:intergenic 45.0%
! AAAGATCTCAGGCTCGCTTT+TGG - chr4.1:13331001-13331020 MS.gene27832:CDS 45.0%
! TTCTTTGGAGGGGACACTAT+CGG - chr4.1:13331981-13332000 MS.gene27832:CDS 45.0%
!! AAGATCTCAGGCTCGCTTTT+GGG - chr4.1:13331002-13331021 MS.gene27832:CDS 45.0%
!! ATGGGAAAAGGCTCTAAAGG+AGG - chr4.1:13331911-13331930 MS.gene27832:CDS 45.0%
GGAAGGAGAGTTCTCTCGAA+AGG - chr4.1:13331200-13331219 MS.gene27832:intron 50.0%
GGGTACCTTGATCTTGCTCT+TGG - chr4.1:13332002-13332021 MS.gene27832:CDS 50.0%
TAAGGATCAGGAGGCAGCAA+TGG + chr4.1:13330979-13330998 None:intergenic 50.0%
! TATAGCTTGCGCTGGGTTCA+TGG - chr4.1:13331862-13331881 MS.gene27832:intron 50.0%
! TCTTTGGAGGGGACACTATC+GGG - chr4.1:13331982-13332001 MS.gene27832:CDS 50.0%
!! CAAGGAGTGTTTGCCACCAA+GGG - chr4.1:13332145-13332164 MS.gene27832:CDS 50.0%
!! TCAAGGAGTGTTTGCCACCA+AGG - chr4.1:13332144-13332163 MS.gene27832:CDS 50.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 13330730 13332224 13330730 ID=MS.gene27832
chr4.1 mRNA 13330730 13332224 13330730 ID=MS.gene27832.t1;Parent=MS.gene27832
chr4.1 exon 13331910 13332224 13331910 ID=MS.gene27832.t1.exon1;Parent=MS.gene27832.t1
chr4.1 CDS 13331910 13332224 13331910 ID=cds.MS.gene27832.t1;Parent=MS.gene27832.t1
chr4.1 exon 13330730 13331087 13330730 ID=MS.gene27832.t1.exon2;Parent=MS.gene27832.t1
chr4.1 CDS 13330730 13331087 13330730 ID=cds.MS.gene27832.t1;Parent=MS.gene27832.t1
Gene Sequence

>MS.gene27832

ATGAGAAACCAAGATGTGAAGCTGCTTAACTTTTTATTGAGTCCAGTTGGTCGTAGAGTTGAATGGGCTCTAAAACTCAAGGGTGTTGAGTATGATTATATAGAAGAAGATATCTTCAACAAAAGTAGTCTTCTTTTCGAATTGAACCCGATTCATAAGAAAGTTCCGGTTCTTGTTCATGGCCAGAAATCAATTGCAGAGTCACTAATTATTCTTGAATACATTGATGAAACATGGAAGCAATATCCATTGCTGCCTCCTGATCCTTATCAAAGATCTCAGGCTCGCTTTTGGGCTAAGTTATCTGATGAAAAGGTGATAGTTTATTTATTTTTTCTTTATGTTGTTCAAATTTAACTAGGCTTATTCTGAGGTTATAAAATACTACGTTTCTTTCAAAGGAAAAAAAAAATTATGTTTCCTTTTTGAGGCAAGAATATTTTTTTGGTGTTAATCATCCGGTTAATAGGGGAAGGAGAGTTCTCTCGAAAGGTAAGTAAATTCTAGTCAATAATTGTTTTATGAACTTAGGTTTTCATGATCAATATGTGTTTAGTGGAGCTCATTACTTGAGTACAATTGTTTGGTTAGAGACAAGAATATTTAATGTTACATAGAAGATATACACAAATTTTAATTTGAAGTTATATAATTCTATCAATTTTTTTAATAACATAACTTAAAAAACAGCCATCTAATAAATTCAAGAGATACTTTAATTATGAGAAAATATATTAAAAATAAAATATAAATATAGAAGATTTTAATTTTTGTATATTGTCGATGTTAATTATTCCATTCCAGGCATACATTCAAGTATTGTTACATTATTTAAAGAATATGACAAATTATATAGTTTTAAACACGATACGCAATGCAATGATATTCAATTGAATTTACCTTTAAAATAGTTTTATATTGACTATGCATACAAGTTAAACTCAATATAGAATAGTTGCCTAATATGTTGATAGAAACGGTACATTATTAAAATTGCATTGAAATGACTGTGCATGTTATTTCTTTTTTTAGTTTTGATTTGTACGAACTTTATTCGATTGAATGACATATAATTATTCAAATAATTCAATGACTTATATTTCAAAAGCCTATTTTTGTATGTGTAAATTATTATAGCTTGCGCTGGGTTCATGGATTGCATTGATTAAGAAAGGTGATGAATGGGAAAAGGCTCTAAAGGAGGCAAGAGAAATCATGGAAAAGTTAGAAGAGGAGATAAAGGGAAAGAAATTCTTTGGAGGGGACACTATCGGGTACCTTGATCTTGCTCTTGGATGGATCACTTGTTTTCTTCCAATTTGGGAAGAAATTGGGTCAACGCAGATACTTGACCCATTAAAATGTCCTTCCATCTCTTCATGGAAGATCAATTTTCTGAGCCATCCTATCATCATCAAGGAGTGTTTGCCACCAAGGGATGAAATGATTCTTTATTGCCACCGTCGCATAAAGGAGTATTCTTCAACTCATCGTG
Protein sequence

>MS.gene27832.t1

MRNQDVKLLNFLLSPVGRRVEWALKLKGVEYDYIEEDIFNKSSLLFELNPIHKKVPVLVHGQKSIAESLIILEYIDETWKQYPLLPPDPYQRSQARFWAKLSDEKLALGSWIALIKKGDEWEKALKEAREIMEKLEEEIKGKKFFGGDTIGYLDLALGWITCFLPIWEEIGSTQILDPLKCPSISSWKINFLSHPIIIKECLPPRDEMILYCHRRIKEYSSTHR