Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40045.t1 | RHN80248.1 | 96 | 478 | 15 | 1 | 1 | 478 | 1 | 474 | 3.80E-179 | 637.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40045.t1 | D2XNQ8 | 90.4 | 478 | 46 | 0 | 1 | 478 | 1 | 478 | 1.7e-175 | 617.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40045.t1 | A0A072VLE3 | 95.2 | 478 | 19 | 1 | 1 | 478 | 1 | 474 | 2.8e-179 | 637.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055316 | MS.gene40045 | 0.814127 | 1.80E-51 | -1.69E-46 |
| MS.gene055317 | MS.gene40045 | 0.836547 | 8.78E-57 | -1.69E-46 |
| MS.gene055318 | MS.gene40045 | 0.816755 | 4.69E-52 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40045.t1 | MTR_1g073400 | 96.862 | 478 | 11 | 1 | 1 | 478 | 1 | 474 | 0.0 | 939 |
| MS.gene40045.t1 | MTR_3g106480 | 92.050 | 478 | 38 | 0 | 1 | 478 | 1 | 478 | 0.0 | 904 |
| MS.gene40045.t1 | MTR_1g115145 | 93.946 | 479 | 22 | 3 | 1 | 478 | 1 | 473 | 0.0 | 885 |
| MS.gene40045.t1 | MTR_1g071130 | 91.632 | 478 | 11 | 2 | 1 | 478 | 1 | 449 | 0.0 | 884 |
| MS.gene40045.t1 | MTR_3g106420 | 91.423 | 478 | 41 | 0 | 1 | 478 | 3 | 480 | 0.0 | 872 |
| MS.gene40045.t1 | MTR_3g106485 | 92.050 | 478 | 34 | 2 | 1 | 478 | 1 | 474 | 0.0 | 871 |
| MS.gene40045.t1 | MTR_3g106430 | 91.405 | 477 | 37 | 2 | 1 | 477 | 1 | 473 | 0.0 | 834 |
| MS.gene40045.t1 | MTR_1g083190 | 88.703 | 478 | 46 | 1 | 1 | 478 | 3 | 472 | 0.0 | 833 |
| MS.gene40045.t1 | MTR_3g106470 | 80.503 | 477 | 37 | 2 | 1 | 477 | 32 | 452 | 0.0 | 733 |
| MS.gene40045.t1 | MTR_8g063830 | 80.430 | 465 | 50 | 5 | 1 | 464 | 1 | 425 | 0.0 | 670 |
| MS.gene40045.t1 | MTR_3g065540 | 66.087 | 115 | 12 | 1 | 40 | 154 | 14 | 101 | 1.54e-41 | 144 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40045.t1 | AT5G25260 | 75.316 | 474 | 105 | 2 | 1 | 474 | 1 | 462 | 0.0 | 740 |
| MS.gene40045.t1 | AT5G25250 | 75.264 | 473 | 103 | 2 | 1 | 473 | 1 | 459 | 0.0 | 728 |
| MS.gene40045.t1 | AT5G64870 | 71.610 | 472 | 123 | 1 | 2 | 473 | 3 | 463 | 0.0 | 662 |
Find 114 sgRNAs with CRISPR-Local
Find 149 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGAATATTTCTCATATTT+AGG | 0.103686 | 1.4:+60019242 | MS.gene40045:CDS |
| TTGAACCTAAGATTAGTATT+TGG | 0.251111 | 1.4:+60020651 | MS.gene40045:CDS |
| CGGAATAACGGAAGGTTCTA+TGG | 0.257659 | 1.4:+60020697 | MS.gene40045:CDS |
| CTGCTAAAGCTGTGGCTCTA+AGG | 0.272737 | 1.4:+60019570 | MS.gene40045:CDS |
| AGGGATTACTTGATGATAAA+TGG | 0.295084 | 1.4:+60020578 | MS.gene40045:CDS |
| ATGAATATTTCTCATATTTA+GGG | 0.305111 | 1.4:+60019243 | MS.gene40045:CDS |
| GTGAAGTTGGCTCGAAATCT+AGG | 0.314615 | 1.4:+60019330 | MS.gene40045:CDS |
| TTTAGGTACAAGAGGCTAAC+TGG | 0.315931 | 1.4:+60020324 | MS.gene40045:intron |
| TTAGTCCAAATACTAATCTT+AGG | 0.318195 | 1.4:-60020656 | None:intergenic |
| CTTCCCGCTGTCTTCACAAT+TGG | 0.324959 | 1.4:+60018951 | MS.gene40045:CDS |
| ACAAGGAGGGATTTAGAGTT+AGG | 0.330276 | 1.4:+60019432 | MS.gene40045:CDS |
| CATGTTGCCTCCTGCTTGGA+TGG | 0.342126 | 1.4:+60020790 | MS.gene40045:CDS |
| TGTAAATCAATAACCCGAAT+TGG | 0.349196 | 1.4:-60019184 | None:intergenic |
| GAAACGACTACACAGCTCTA+AGG | 0.361629 | 1.4:+60020558 | MS.gene40045:CDS |
| AAGATTAGTATTTGGACTAA+TGG | 0.361897 | 1.4:+60020659 | MS.gene40045:CDS |
| CAATGCGAATGTTAAGCAAT+TGG | 0.388576 | 1.4:+60019205 | MS.gene40045:CDS |
| CAACTCGAACTAAACCAATT+CGG | 0.390858 | 1.4:+60019170 | MS.gene40045:CDS |
| ATCAAAATCAAACGATGTAC+AGG | 0.393868 | 1.4:+60018757 | None:intergenic |
| TGGTCCTCGTGTTGACGATC+AGG | 0.407219 | 1.4:+60018971 | MS.gene40045:CDS |
| TCAAACTTGCAAAGAAATCA+TGG | 0.416941 | 1.4:+60018832 | MS.gene40045:CDS |
| AACTCGAACTAAACCAATTC+GGG | 0.427281 | 1.4:+60019171 | MS.gene40045:CDS |
| TCCGAGTACCTGGTGATAAC+CGG | 0.437519 | 1.4:+60018792 | MS.gene40045:CDS |
| GATGTCTTCGATTCCAGCTC+CGG | 0.437947 | 1.4:-60018811 | None:intergenic |
| GAAGAAAGCGGCTTGGACTA+AGG | 0.439613 | 1.4:+60019523 | MS.gene40045:CDS |
| AGCAATTCTGTATGAGAAGA+AGG | 0.462456 | 1.4:+60020376 | MS.gene40045:CDS |
| AAATCAGTTTAGCGTATTTG+AGG | 0.472961 | 1.4:-60019001 | None:intergenic |
| TTTAGGGCAAAAGACGCAAA+TGG | 0.491891 | 1.4:+60019259 | MS.gene40045:CDS |
| AAGACTGTCCATGAGCAAAC+AGG | 0.492575 | 1.4:+60020767 | MS.gene40045:CDS |
| TGGAAGCAGCGAATCAAGCT+AGG | 0.499263 | 1.4:+60019279 | MS.gene40045:CDS |
| TTGGACTAAGGCGGCTCAAG+TGG | 0.501148 | 1.4:+60019535 | MS.gene40045:CDS |
| TGCTAAAGCTGTGGCTCTAA+GGG | 0.501192 | 1.4:+60019571 | MS.gene40045:CDS |
| CAGGCATGTTGCCTCCTGCT+TGG | 0.503335 | 1.4:+60020786 | MS.gene40045:CDS |
| TGCTTCGATGACCATGGAAG+AGG | 0.508530 | 1.4:+60019100 | MS.gene40045:CDS |
| AGCAAAAGCATCCGAGTACC+TGG | 0.509436 | 1.4:+60018782 | MS.gene40045:CDS |
| TAGAGTTAGGACTGAAGTGA+AGG | 0.517399 | 1.4:+60019445 | MS.gene40045:CDS |
| GCTAAGATGAAAGGTGAAGT+TGG | 0.517494 | 1.4:+60019317 | MS.gene40045:CDS |
| CATGTCAAGGAACTAGTTCA+AGG | 0.517510 | 1.4:+60019047 | MS.gene40045:CDS |
| GCAACATGCCTGTTTGCTCA+TGG | 0.521020 | 1.4:-60020775 | None:intergenic |
| ATGTTGCCTCCTGCTTGGAT+GGG | 0.522936 | 1.4:+60020791 | MS.gene40045:CDS |
| TACCTGGTGATAACCGGAGC+TGG | 0.525647 | 1.4:+60018798 | MS.gene40045:CDS |
| ATGGGCATGAAAGAGGTTGC+TGG | 0.526365 | 1.4:+60020716 | MS.gene40045:CDS |
| AAGCAATTGGTGGATGTGCC+TGG | 0.526695 | 1.4:+60019218 | MS.gene40045:CDS |
| TCCTCTGAAAACCTCTTCCA+TGG | 0.530446 | 1.4:-60019111 | None:intergenic |
| GGCTCAAGTGGCTGAAGTCG+AGG | 0.533715 | 1.4:+60019547 | MS.gene40045:CDS |
| ATTAGTATTTGGACTAATGG+AGG | 0.534214 | 1.4:+60020662 | MS.gene40045:CDS |
| CTCAACCTCAACTTGCAACT+CGG | 0.534972 | 1.4:-60019597 | None:intergenic |
| TTCCAGCTCCGGTTATCACC+AGG | 0.538435 | 1.4:-60018800 | None:intergenic |
| TGGTGGCATGTTTCAAGAGA+TGG | 0.539247 | 1.4:+60020598 | MS.gene40045:CDS |
| GTTATTGCTATGCAGAGAGC+TGG | 0.540557 | 1.4:+60019401 | MS.gene40045:CDS |
| TCCGGTTATCACCAGGTACT+CGG | 0.542656 | 1.4:-60018793 | None:intergenic |
| GGCTGAGGCTAATTCTGAGT+TGG | 0.544080 | 1.4:+60019496 | MS.gene40045:CDS |
| TGACAATGGAGGCGGAATAA+CGG | 0.546090 | 1.4:+60020685 | MS.gene40045:CDS |
| GCAGAAGGGATTGTGACACT+TGG | 0.546780 | 1.4:+60020491 | MS.gene40045:CDS |
| CACCGTCTTCGACCTCTCAC+CGG | 0.548854 | 1.4:+60018875 | MS.gene40045:CDS |
| GATAAGGTTCCCATCCAAGC+AGG | 0.550974 | 1.4:-60020800 | None:intergenic |
| AATACACTTCTCAATGCACT+TGG | 0.557121 | 1.4:+60020536 | MS.gene40045:CDS |
| AAGAGAGGCTGAAGTGGCTG+AGG | 0.558698 | 1.4:+60019481 | MS.gene40045:CDS |
| TTGGATGGTTTAGGTACAAG+AGG | 0.561865 | 1.4:+60020316 | MS.gene40045:intron |
| CAAACTTGCAAAGAAATCAT+GGG | 0.562132 | 1.4:+60018833 | MS.gene40045:CDS |
| AGGTTCTATGGGCATGAAAG+AGG | 0.562875 | 1.4:+60020709 | MS.gene40045:CDS |
| TGCGAATGTTAAGCAATTGG+TGG | 0.563120 | 1.4:+60019208 | MS.gene40045:CDS |
| GGACCAATTGTGAAGACAGC+GGG | 0.564372 | 1.4:-60018954 | None:intergenic |
| GGAATAACGGAAGGTTCTAT+GGG | 0.567693 | 1.4:+60020698 | MS.gene40045:CDS |
| CCTCGCTGCTTCGATGACCA+TGG | 0.570615 | 1.4:+60019094 | MS.gene40045:CDS |
| AGTTGCAAGTTGAGGTTGAG+AGG | 0.571098 | 1.4:+60019600 | MS.gene40045:CDS |
| ACTTCGAAGGTATAGTTCAC+CGG | 0.571447 | 1.4:-60018894 | None:intergenic |
| AAGACGGTGCAAGATTGACC+AGG | 0.574032 | 1.4:-60018861 | None:intergenic |
| AGGTATAGTTCACCGGTGAG+AGG | 0.574045 | 1.4:-60018887 | None:intergenic |
| GGAAGCCGAGTTGCAAGTTG+AGG | 0.577272 | 1.4:+60019592 | MS.gene40045:CDS |
| TTAGGTACAAGAGGCTAACT+GGG | 0.579786 | 1.4:+60020325 | MS.gene40045:intron |
| TGAAGTTGGCTCGAAATCTA+GGG | 0.579862 | 1.4:+60019331 | MS.gene40045:CDS |
| GTGACACTTGGGAATGCTCA+AGG | 0.583871 | 1.4:+60020503 | MS.gene40045:CDS |
| TGGCGAAGAAGAAAGCGGCT+TGG | 0.584288 | 1.4:+60019516 | MS.gene40045:CDS |
| TCAGTTTAGCGTATTTGAGG+AGG | 0.587438 | 1.4:-60018998 | None:intergenic |
| GAATCAAAGAGAGGCTGAAG+TGG | 0.589954 | 1.4:+60019475 | MS.gene40045:CDS |
| AAACGACTACACAGCTCTAA+GGG | 0.592700 | 1.4:+60020559 | MS.gene40045:CDS |
| CAGAAGGGATTGTGACACTT+GGG | 0.598815 | 1.4:+60020492 | MS.gene40045:CDS |
| TCTGTATGAGAAGAAGGCAG+AGG | 0.600808 | 1.4:+60020382 | MS.gene40045:CDS |
| ACTCATGGCTTGAACTTCGA+AGG | 0.601319 | 1.4:-60018907 | None:intergenic |
| AATGGAGGTGACAATGGAGG+CGG | 0.607583 | 1.4:+60020677 | MS.gene40045:CDS |
| TGGACTAATGGAGGTGACAA+TGG | 0.609237 | 1.4:+60020671 | MS.gene40045:CDS |
| GCTGGAGAGAGTGACAAGGA+GGG | 0.609527 | 1.4:+60019419 | MS.gene40045:CDS |
| CTAGTTCAAGGAATCATCGA+AGG | 0.612313 | 1.4:+60019059 | MS.gene40045:CDS |
| GTGGCAGAAGCTAAGATGAA+AGG | 0.614706 | 1.4:+60019308 | MS.gene40045:CDS |
| AGCTGGAGAGAGTGACAAGG+AGG | 0.627665 | 1.4:+60019418 | MS.gene40045:CDS |
| CACCGGTGAGAGGTCGAAGA+CGG | 0.628279 | 1.4:-60018877 | None:intergenic |
| AAGACAGCGGGAAGAACGAA+AGG | 0.630029 | 1.4:-60018942 | None:intergenic |
| GGAAGCAGCGAATCAAGCTA+GGG | 0.630802 | 1.4:+60019280 | MS.gene40045:CDS |
| TAGTTCAAGGAATCATCGAA+GGG | 0.630851 | 1.4:+60019060 | MS.gene40045:CDS |
| GTTGGCTCGAAATCTAGGGA+AGG | 0.635413 | 1.4:+60019335 | MS.gene40045:CDS |
| ATCAATGCTGAGGCAGTACG+TGG | 0.635980 | 1.4:+60020626 | MS.gene40045:CDS |
| TATGAGAAATATTCATGACC+AGG | 0.636387 | 1.4:-60019236 | None:intergenic |
| GAGAGCTGGAGAGAGTGACA+AGG | 0.636874 | 1.4:+60019415 | MS.gene40045:CDS |
| TCAAAATCAAACGATGTACA+GGG | 0.641066 | 1.4:+60018758 | None:intergenic |
| TAGTGTTGAGTATGAAACCA+AGG | 0.644971 | 1.4:+60019676 | MS.gene40045:CDS |
| TTGGCTCGAAATCTAGGGAA+GGG | 0.650991 | 1.4:+60019336 | MS.gene40045:CDS |
| TGAGTTGGCGAAGAAGAAAG+CGG | 0.653130 | 1.4:+60019511 | MS.gene40045:CDS |
| TAAACTCTCGAATCATGTCA+AGG | 0.655320 | 1.4:+60019034 | MS.gene40045:CDS |
| TGGACAGTCTTAAACAGAGG+TGG | 0.656626 | 1.4:-60020755 | None:intergenic |
| GATTACTTGATGATAAATGG+TGG | 0.658453 | 1.4:+60020581 | MS.gene40045:CDS |
| TCATGGACAGTCTTAAACAG+AGG | 0.660499 | 1.4:-60020758 | None:intergenic |
| AGTCGAGGCTGCTAAAGCTG+TGG | 0.666475 | 1.4:+60019562 | MS.gene40045:CDS |
| AATGGAGGCGGAATAACGGA+AGG | 0.668536 | 1.4:+60020689 | MS.gene40045:CDS |
| AAGGTTCCCATCCAAGCAGG+AGG | 0.669932 | 1.4:-60020797 | None:intergenic |
| ACTAATGGAGGTGACAATGG+AGG | 0.677352 | 1.4:+60020674 | MS.gene40045:CDS |
| TGATTCGAGAGTTTATCATG+AGG | 0.680428 | 1.4:-60019026 | None:intergenic |
| GATGGCTAAGATCAATGCTG+AGG | 0.682349 | 1.4:+60020616 | MS.gene40045:CDS |
| GAATCAAGCTAGGGTTGACG+TGG | 0.682564 | 1.4:+60019289 | MS.gene40045:CDS |
| CTTTCCTGATCGTCAACACG+AGG | 0.689163 | 1.4:-60018975 | None:intergenic |
| AGACGGTGCAAGATTGACCA+GGG | 0.716272 | 1.4:-60018860 | None:intergenic |
| AGTTCAAGGAATCATCGAAG+GGG | 0.721843 | 1.4:+60019061 | MS.gene40045:CDS |
| AGGACCAATTGTGAAGACAG+CGG | 0.726189 | 1.4:-60018955 | None:intergenic |
| CCATGGTCATCGAAGCAGCG+AGG | 0.728643 | 1.4:-60019094 | None:intergenic |
| GAAAGCGGCTTGGACTAAGG+CGG | 0.747622 | 1.4:+60019526 | MS.gene40045:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATTAATAAATGAAAGA+AGG | - | chr1.4:60019723-60019742 | None:intergenic | 10.0% |
| !!! | AATAATACTTTAATATCTTT+TGG | + | chr1.4:60019775-60019794 | MS.gene40045:intron | 10.0% |
| !! | ATGAATATTTCTCATATTTA+GGG | + | chr1.4:60019243-60019262 | MS.gene40045:CDS | 15.0% |
| !! | CATTATAAAACTAAATCATA+TGG | + | chr1.4:60019949-60019968 | MS.gene40045:intron | 15.0% |
| !!! | AATGTTTATTTTTTAAGTAC+TGG | + | chr1.4:60020285-60020304 | MS.gene40045:intron | 15.0% |
| !!! | TGTTCTAAATTAATTTTGTT+AGG | + | chr1.4:60020005-60020024 | MS.gene40045:intron | 15.0% |
| !! | CATGAATATTTCTCATATTT+AGG | + | chr1.4:60019242-60019261 | MS.gene40045:CDS | 20.0% |
| !! | TCATGTTAAAAAAATTGACA+AGG | - | chr1.4:60020205-60020224 | None:intergenic | 20.0% |
| !! | TTAAAAAAATTGACAAGGTT+TGG | - | chr1.4:60020200-60020219 | None:intergenic | 20.0% |
| !!! | TATGGAATAGTCAAAATTTT+TGG | + | chr1.4:60019891-60019910 | MS.gene40045:intron | 20.0% |
| !!! | TTAATATGTTATATGGACTA+TGG | + | chr1.4:60019873-60019892 | MS.gene40045:intron | 20.0% |
| ! | AAAACAAAACGATTGACATA+TGG | + | chr1.4:60020127-60020146 | MS.gene40045:intron | 25.0% |
| ! | AAGATTAGTATTTGGACTAA+TGG | + | chr1.4:60020659-60020678 | MS.gene40045:CDS | 25.0% |
| ! | ACAAAATAATAGCAAGCAAA+GGG | - | chr1.4:60020056-60020075 | None:intergenic | 25.0% |
| ! | ATTGACATATGGTATGTAAA+TGG | + | chr1.4:60020138-60020157 | MS.gene40045:intron | 25.0% |
| ! | GAAGTAAAACATAACAAAGT+AGG | + | chr1.4:60020237-60020256 | MS.gene40045:intron | 25.0% |
| ! | TTAGTCCAAATACTAATCTT+AGG | - | chr1.4:60020659-60020678 | None:intergenic | 25.0% |
| ! | TTGAACCTAAGATTAGTATT+TGG | + | chr1.4:60020651-60020670 | MS.gene40045:CDS | 25.0% |
| !!! | GCTATTATTTTGTGTACTTT+TGG | + | chr1.4:60020063-60020082 | MS.gene40045:intron | 25.0% |
| !!! | TCACTGTAGTTAAAGTTTTT+TGG | + | chr1.4:60019809-60019828 | MS.gene40045:intron | 25.0% |
| !!! | TTAAGTACTGGTTGAAATTT+TGG | + | chr1.4:60020297-60020316 | MS.gene40045:intron | 25.0% |
| AAATCAGTTTAGCGTATTTG+AGG | - | chr1.4:60019004-60019023 | None:intergenic | 30.0% | |
| AAGAAGGAGTTATATTTGCA+TGG | - | chr1.4:60019707-60019726 | None:intergenic | 30.0% | |
| ATTAGTATTTGGACTAATGG+AGG | + | chr1.4:60020662-60020681 | MS.gene40045:CDS | 30.0% | |
| CAAACTTGCAAAGAAATCAT+GGG | + | chr1.4:60018833-60018852 | MS.gene40045:CDS | 30.0% | |
| CACAAAATAATAGCAAGCAA+AGG | - | chr1.4:60020057-60020076 | None:intergenic | 30.0% | |
| GGCAAATAGATTGAAGAATA+TGG | + | chr1.4:60020159-60020178 | MS.gene40045:intron | 30.0% | |
| TATGAGAAATATTCATGACC+AGG | - | chr1.4:60019239-60019258 | None:intergenic | 30.0% | |
| TCAAACTTGCAAAGAAATCA+TGG | + | chr1.4:60018832-60018851 | MS.gene40045:CDS | 30.0% | |
| TGTAAATCAATAACCCGAAT+TGG | - | chr1.4:60019187-60019206 | None:intergenic | 30.0% | |
| ! | AAAAATTGACAAGGTTTGGT+TGG | - | chr1.4:60020196-60020215 | None:intergenic | 30.0% |
| ! | AGGGATTACTTGATGATAAA+TGG | + | chr1.4:60020578-60020597 | MS.gene40045:CDS | 30.0% |
| ! | GATTACTTGATGATAAATGG+TGG | + | chr1.4:60020581-60020600 | MS.gene40045:CDS | 30.0% |
| ! | GTTGAAATTTTGGATGGTTT+AGG | + | chr1.4:60020307-60020326 | MS.gene40045:intron | 30.0% |
| AACTCGAACTAAACCAATTC+GGG | + | chr1.4:60019171-60019190 | MS.gene40045:CDS | 35.0% | |
| AATACACTTCTCAATGCACT+TGG | + | chr1.4:60020536-60020555 | MS.gene40045:CDS | 35.0% | |
| AGCAATTCTGTATGAGAAGA+AGG | + | chr1.4:60020376-60020395 | MS.gene40045:CDS | 35.0% | |
| CAAAGAAAAAAGAGGCAGAA+GGG | + | chr1.4:60020477-60020496 | MS.gene40045:CDS | 35.0% | |
| CAACTCGAACTAAACCAATT+CGG | + | chr1.4:60019170-60019189 | MS.gene40045:CDS | 35.0% | |
| CAATGCGAATGTTAAGCAAT+TGG | + | chr1.4:60019205-60019224 | MS.gene40045:CDS | 35.0% | |
| GCTATACGCAAAGAAAAAAG+AGG | + | chr1.4:60020469-60020488 | MS.gene40045:CDS | 35.0% | |
| TAAACTCTCGAATCATGTCA+AGG | + | chr1.4:60019034-60019053 | MS.gene40045:CDS | 35.0% | |
| TAGTTCAAGGAATCATCGAA+GGG | + | chr1.4:60019060-60019079 | MS.gene40045:CDS | 35.0% | |
| TGATTCGAGAGTTTATCATG+AGG | - | chr1.4:60019029-60019048 | None:intergenic | 35.0% | |
| ! | AAGAACGAAAGGCAGTTTTT+CGG | - | chr1.4:60018934-60018953 | None:intergenic | 35.0% |
| ! | ATATTTGCATGGACTAACCT+TGG | - | chr1.4:60019696-60019715 | None:intergenic | 35.0% |
| ! | TAGTGTTGAGTATGAAACCA+AGG | + | chr1.4:60019676-60019695 | MS.gene40045:CDS | 35.0% |
| ! | TTAAGAGCTTTTGTCGGATA+AGG | - | chr1.4:60020819-60020838 | None:intergenic | 35.0% |
| !! | GGTTTTTGAGAATCAAAGAG+AGG | + | chr1.4:60019466-60019485 | MS.gene40045:CDS | 35.0% |
| !!! | GTACTGGTTGAAATTTTGGA+TGG | + | chr1.4:60020301-60020320 | MS.gene40045:intron | 35.0% |
| AATGTGCCAAGTCTAAATCG+TGG | + | chr1.4:60020028-60020047 | MS.gene40045:intron | 40.0% | |
| AGCAAGTGCTATGTTTCGTT+TGG | + | chr1.4:60020102-60020121 | MS.gene40045:intron | 40.0% | |
| AGTTCAAGGAATCATCGAAG+GGG | + | chr1.4:60019061-60019080 | MS.gene40045:CDS | 40.0% | |
| CATGTCAAGGAACTAGTTCA+AGG | + | chr1.4:60019047-60019066 | MS.gene40045:CDS | 40.0% | |
| CTAGTTCAAGGAATCATCGA+AGG | + | chr1.4:60019059-60019078 | MS.gene40045:CDS | 40.0% | |
| GAATGCAGCAAAAATTGACG+CGG | + | chr1.4:60019370-60019389 | MS.gene40045:CDS | 40.0% | |
| GCAAAGAAAAAAGAGGCAGA+AGG | + | chr1.4:60020476-60020495 | MS.gene40045:CDS | 40.0% | |
| GCTAAGATGAAAGGTGAAGT+TGG | + | chr1.4:60019317-60019336 | MS.gene40045:CDS | 40.0% | |
| TAGAGTTAGGACTGAAGTGA+AGG | + | chr1.4:60019445-60019464 | MS.gene40045:CDS | 40.0% | |
| TCAGTTTAGCGTATTTGAGG+AGG | - | chr1.4:60019001-60019020 | None:intergenic | 40.0% | |
| TCATGGACAGTCTTAAACAG+AGG | - | chr1.4:60020761-60020780 | None:intergenic | 40.0% | |
| TGCGAATGTTAAGCAATTGG+TGG | + | chr1.4:60019208-60019227 | MS.gene40045:CDS | 40.0% | |
| TTAGGTACAAGAGGCTAACT+GGG | + | chr1.4:60020325-60020344 | MS.gene40045:intron | 40.0% | |
| TTGGATGGTTTAGGTACAAG+AGG | + | chr1.4:60020316-60020335 | MS.gene40045:intron | 40.0% | |
| TTTAGGTACAAGAGGCTAAC+TGG | + | chr1.4:60020324-60020343 | MS.gene40045:intron | 40.0% | |
| ! | AAACGACTACACAGCTCTAA+GGG | + | chr1.4:60020559-60020578 | MS.gene40045:CDS | 40.0% |
| ! | AAGAAATCATGGGTTTTCCC+TGG | + | chr1.4:60018843-60018862 | MS.gene40045:CDS | 40.0% |
| ! | ACAAGGAGGGATTTAGAGTT+AGG | + | chr1.4:60019432-60019451 | MS.gene40045:CDS | 40.0% |
| ! | ACTTCGAAGGTATAGTTCAC+CGG | - | chr1.4:60018897-60018916 | None:intergenic | 40.0% |
| ! | GGAATAACGGAAGGTTCTAT+GGG | + | chr1.4:60020698-60020717 | MS.gene40045:CDS | 40.0% |
| ! | TTTAGGGCAAAAGACGCAAA+TGG | + | chr1.4:60019259-60019278 | MS.gene40045:CDS | 40.0% |
| !! | TGAAGTTGGCTCGAAATCTA+GGG | + | chr1.4:60019331-60019350 | MS.gene40045:CDS | 40.0% |
| AAGACTGTCCATGAGCAAAC+AGG | + | chr1.4:60020767-60020786 | MS.gene40045:CDS | 45.0% | |
| ACTAATGGAGGTGACAATGG+AGG | + | chr1.4:60020674-60020693 | MS.gene40045:CDS | 45.0% | |
| ACTCATGGCTTGAACTTCGA+AGG | - | chr1.4:60018910-60018929 | None:intergenic | 45.0% | |
| AGGACCAATTGTGAAGACAG+CGG | - | chr1.4:60018958-60018977 | None:intergenic | 45.0% | |
| AGGGATCCACGATTTAGACT+TGG | - | chr1.4:60020037-60020056 | None:intergenic | 45.0% | |
| AGGTTCTATGGGCATGAAAG+AGG | + | chr1.4:60020709-60020728 | MS.gene40045:CDS | 45.0% | |
| CAGAAGGGATTGTGACACTT+GGG | + | chr1.4:60020492-60020511 | MS.gene40045:CDS | 45.0% | |
| CTCAACCTCAACTTGCAACT+CGG | - | chr1.4:60019600-60019619 | None:intergenic | 45.0% | |
| GAAACGACTACACAGCTCTA+AGG | + | chr1.4:60020558-60020577 | MS.gene40045:CDS | 45.0% | |
| GAATCAAAGAGAGGCTGAAG+TGG | + | chr1.4:60019475-60019494 | MS.gene40045:CDS | 45.0% | |
| GATGGCTAAGATCAATGCTG+AGG | + | chr1.4:60020616-60020635 | MS.gene40045:CDS | 45.0% | |
| GTGGCAGAAGCTAAGATGAA+AGG | + | chr1.4:60019308-60019327 | MS.gene40045:CDS | 45.0% | |
| GTTATTGCTATGCAGAGAGC+TGG | + | chr1.4:60019401-60019420 | MS.gene40045:CDS | 45.0% | |
| TCTGTATGAGAAGAAGGCAG+AGG | + | chr1.4:60020382-60020401 | MS.gene40045:CDS | 45.0% | |
| TGACAATGGAGGCGGAATAA+CGG | + | chr1.4:60020685-60020704 | MS.gene40045:CDS | 45.0% | |
| TGGACAGTCTTAAACAGAGG+TGG | - | chr1.4:60020758-60020777 | None:intergenic | 45.0% | |
| TGGACTAATGGAGGTGACAA+TGG | + | chr1.4:60020671-60020690 | MS.gene40045:CDS | 45.0% | |
| TGGTGGCATGTTTCAAGAGA+TGG | + | chr1.4:60020598-60020617 | MS.gene40045:CDS | 45.0% | |
| ! | ACCATGGAAGAGGTTTTCAG+AGG | + | chr1.4:60019110-60019129 | MS.gene40045:CDS | 45.0% |
| ! | AGTTGCAAGTTGAGGTTGAG+AGG | + | chr1.4:60019600-60019619 | MS.gene40045:CDS | 45.0% |
| ! | CGGAATAACGGAAGGTTCTA+TGG | + | chr1.4:60020697-60020716 | MS.gene40045:CDS | 45.0% |
| ! | TCCTCTGAAAACCTCTTCCA+TGG | - | chr1.4:60019114-60019133 | None:intergenic | 45.0% |
| ! | TGAGTTGGCGAAGAAGAAAG+CGG | + | chr1.4:60019511-60019530 | MS.gene40045:CDS | 45.0% |
| ! | TTGGCTCGAAATCTAGGGAA+GGG | + | chr1.4:60019336-60019355 | MS.gene40045:CDS | 45.0% |
| !! | GTGAAGTTGGCTCGAAATCT+AGG | + | chr1.4:60019330-60019349 | MS.gene40045:CDS | 45.0% |
| !! | TGCTAAAGCTGTGGCTCTAA+GGG | + | chr1.4:60019571-60019590 | MS.gene40045:CDS | 45.0% |
| !!! | TTATTTTTTAATATGTTATA+TGG | + | chr1.4:60019866-60019885 | MS.gene40045:intron | 5.0% |
| AAGACAGCGGGAAGAACGAA+AGG | - | chr1.4:60018945-60018964 | None:intergenic | 50.0% | |
| AAGACGGTGCAAGATTGACC+AGG | - | chr1.4:60018864-60018883 | None:intergenic | 50.0% | |
| AATGGAGGTGACAATGGAGG+CGG | + | chr1.4:60020677-60020696 | MS.gene40045:CDS | 50.0% | |
| AGACGGTGCAAGATTGACCA+GGG | - | chr1.4:60018863-60018882 | None:intergenic | 50.0% | |
| AGGTATAGTTCACCGGTGAG+AGG | - | chr1.4:60018890-60018909 | None:intergenic | 50.0% | |
| ATCAATGCTGAGGCAGTACG+TGG | + | chr1.4:60020626-60020645 | MS.gene40045:CDS | 50.0% | |
| ATGGGCATGAAAGAGGTTGC+TGG | + | chr1.4:60020716-60020735 | MS.gene40045:CDS | 50.0% | |
| ATGTTGCCTCCTGCTTGGAT+GGG | + | chr1.4:60020791-60020810 | MS.gene40045:CDS | 50.0% | |
| CTTCCCGCTGTCTTCACAAT+TGG | + | chr1.4:60018951-60018970 | MS.gene40045:CDS | 50.0% | |
| CTTTCCTGATCGTCAACACG+AGG | - | chr1.4:60018978-60018997 | None:intergenic | 50.0% | |
| GAATCAAGCTAGGGTTGACG+TGG | + | chr1.4:60019289-60019308 | MS.gene40045:CDS | 50.0% | |
| GATAAGGTTCCCATCCAAGC+AGG | - | chr1.4:60020803-60020822 | None:intergenic | 50.0% | |
| GATGTCTTCGATTCCAGCTC+CGG | - | chr1.4:60018814-60018833 | None:intergenic | 50.0% | |
| GCAACATGCCTGTTTGCTCA+TGG | - | chr1.4:60020778-60020797 | None:intergenic | 50.0% | |
| GCAGAAGGGATTGTGACACT+TGG | + | chr1.4:60020491-60020510 | MS.gene40045:CDS | 50.0% | |
| GGAAGCAGCGAATCAAGCTA+GGG | + | chr1.4:60019280-60019299 | MS.gene40045:CDS | 50.0% | |
| GGACCAATTGTGAAGACAGC+GGG | - | chr1.4:60018957-60018976 | None:intergenic | 50.0% | |
| GGCTGAGGCTAATTCTGAGT+TGG | + | chr1.4:60019496-60019515 | MS.gene40045:CDS | 50.0% | |
| GTGACACTTGGGAATGCTCA+AGG | + | chr1.4:60020503-60020522 | MS.gene40045:CDS | 50.0% | |
| TCCGAGTACCTGGTGATAAC+CGG | + | chr1.4:60018792-60018811 | MS.gene40045:CDS | 50.0% | |
| TCCGGTTATCACCAGGTACT+CGG | - | chr1.4:60018796-60018815 | None:intergenic | 50.0% | |
| TGCTTCGATGACCATGGAAG+AGG | + | chr1.4:60019100-60019119 | MS.gene40045:CDS | 50.0% | |
| TGGAAGCAGCGAATCAAGCT+AGG | + | chr1.4:60019279-60019298 | MS.gene40045:CDS | 50.0% | |
| ! | AAGCAATTGGTGGATGTGCC+TGG | + | chr1.4:60019218-60019237 | MS.gene40045:CDS | 50.0% |
| ! | AATGGAGGCGGAATAACGGA+AGG | + | chr1.4:60020689-60020708 | MS.gene40045:CDS | 50.0% |
| ! | CTGCTAAAGCTGTGGCTCTA+AGG | + | chr1.4:60019570-60019589 | MS.gene40045:CDS | 50.0% |
| ! | GAAGAAAGCGGCTTGGACTA+AGG | + | chr1.4:60019523-60019542 | MS.gene40045:CDS | 50.0% |
| !! | AGCAAAAGCATCCGAGTACC+TGG | + | chr1.4:60018782-60018801 | MS.gene40045:CDS | 50.0% |
| !! | AGGCAGTTTTTCGGCACTCA+TGG | - | chr1.4:60018925-60018944 | None:intergenic | 50.0% |
| !! | GTTGGCTCGAAATCTAGGGA+AGG | + | chr1.4:60019335-60019354 | MS.gene40045:CDS | 50.0% |
| AAGAGAGGCTGAAGTGGCTG+AGG | + | chr1.4:60019481-60019500 | MS.gene40045:CDS | 55.0% | |
| AAGGTTCCCATCCAAGCAGG+AGG | - | chr1.4:60020800-60020819 | None:intergenic | 55.0% | |
| AGCTGGAGAGAGTGACAAGG+AGG | + | chr1.4:60019418-60019437 | MS.gene40045:CDS | 55.0% | |
| AGTCGAGGCTGCTAAAGCTG+TGG | + | chr1.4:60019562-60019581 | MS.gene40045:CDS | 55.0% | |
| CATGTTGCCTCCTGCTTGGA+TGG | + | chr1.4:60020790-60020809 | MS.gene40045:CDS | 55.0% | |
| GAGAGCTGGAGAGAGTGACA+AGG | + | chr1.4:60019415-60019434 | MS.gene40045:CDS | 55.0% | |
| GCTGGAGAGAGTGACAAGGA+GGG | + | chr1.4:60019419-60019438 | MS.gene40045:CDS | 55.0% | |
| GGAAGCCGAGTTGCAAGTTG+AGG | + | chr1.4:60019592-60019611 | MS.gene40045:CDS | 55.0% | |
| TACCTGGTGATAACCGGAGC+TGG | + | chr1.4:60018798-60018817 | MS.gene40045:CDS | 55.0% | |
| TGGCGAAGAAGAAAGCGGCT+TGG | + | chr1.4:60019516-60019535 | MS.gene40045:CDS | 55.0% | |
| TTCCAGCTCCGGTTATCACC+AGG | - | chr1.4:60018803-60018822 | None:intergenic | 55.0% | |
| TTGGACTAAGGCGGCTCAAG+TGG | + | chr1.4:60019535-60019554 | MS.gene40045:CDS | 55.0% | |
| ! | GAAAGCGGCTTGGACTAAGG+CGG | + | chr1.4:60019526-60019545 | MS.gene40045:CDS | 55.0% |
| ! | TGGTCCTCGTGTTGACGATC+AGG | + | chr1.4:60018971-60018990 | MS.gene40045:CDS | 55.0% |
| CACCGGTGAGAGGTCGAAGA+CGG | - | chr1.4:60018880-60018899 | None:intergenic | 60.0% | |
| CACCGTCTTCGACCTCTCAC+CGG | + | chr1.4:60018875-60018894 | MS.gene40045:CDS | 60.0% | |
| CAGGCATGTTGCCTCCTGCT+TGG | + | chr1.4:60020786-60020805 | MS.gene40045:CDS | 60.0% | |
| CCATGGTCATCGAAGCAGCG+AGG | - | chr1.4:60019097-60019116 | None:intergenic | 60.0% | |
| CCTCGCTGCTTCGATGACCA+TGG | + | chr1.4:60019094-60019113 | MS.gene40045:CDS | 60.0% | |
| GGCTCAAGTGGCTGAAGTCG+AGG | + | chr1.4:60019547-60019566 | MS.gene40045:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 60018771 | 60020838 | 60018771 | ID=MS.gene40045 |
| chr1.4 | mRNA | 60018771 | 60020838 | 60018771 | ID=MS.gene40045.t1;Parent=MS.gene40045 |
| chr1.4 | exon | 60018771 | 60019697 | 60018771 | ID=MS.gene40045.t1.exon1;Parent=MS.gene40045.t1 |
| chr1.4 | CDS | 60018771 | 60019697 | 60018771 | ID=cds.MS.gene40045.t1;Parent=MS.gene40045.t1 |
| chr1.4 | exon | 60020329 | 60020838 | 60020329 | ID=MS.gene40045.t1.exon2;Parent=MS.gene40045.t1 |
| chr1.4 | CDS | 60020329 | 60020838 | 60020329 | ID=cds.MS.gene40045.t1;Parent=MS.gene40045.t1 |
| Gene Sequence |
| Protein sequence |
