Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51436.t1 | RHN80248.1 | 97.1 | 478 | 10 | 1 | 1 | 478 | 1 | 474 | 3.70E-182 | 647.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51436.t1 | D2XNQ8 | 91.8 | 478 | 39 | 0 | 1 | 478 | 1 | 478 | 2.5e-179 | 629.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51436.t1 | A0A072VLE3 | 96.2 | 478 | 14 | 1 | 1 | 478 | 1 | 474 | 2.7e-182 | 647.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055317 | MS.gene51436 | 0.822566 | 2.21E-53 | -1.69E-46 |
| MS.gene055318 | MS.gene51436 | 0.869461 | 3.04E-66 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51436.t1 | MTR_1g073400 | 96.862 | 478 | 11 | 1 | 1 | 478 | 1 | 474 | 0.0 | 940 |
| MS.gene51436.t1 | MTR_3g106480 | 92.469 | 478 | 36 | 0 | 1 | 478 | 1 | 478 | 0.0 | 910 |
| MS.gene51436.t1 | MTR_1g115145 | 93.946 | 479 | 22 | 3 | 1 | 478 | 1 | 473 | 0.0 | 887 |
| MS.gene51436.t1 | MTR_1g071130 | 91.632 | 478 | 11 | 2 | 1 | 478 | 1 | 449 | 0.0 | 885 |
| MS.gene51436.t1 | MTR_3g106420 | 91.423 | 478 | 41 | 0 | 1 | 478 | 3 | 480 | 0.0 | 874 |
| MS.gene51436.t1 | MTR_3g106485 | 92.050 | 478 | 34 | 2 | 1 | 478 | 1 | 474 | 0.0 | 873 |
| MS.gene51436.t1 | MTR_3g106430 | 91.405 | 477 | 37 | 2 | 1 | 477 | 1 | 473 | 0.0 | 836 |
| MS.gene51436.t1 | MTR_1g083190 | 88.703 | 478 | 46 | 1 | 1 | 478 | 3 | 472 | 0.0 | 835 |
| MS.gene51436.t1 | MTR_3g106470 | 80.503 | 477 | 37 | 2 | 1 | 477 | 32 | 452 | 0.0 | 734 |
| MS.gene51436.t1 | MTR_8g063830 | 80.430 | 465 | 50 | 5 | 1 | 464 | 1 | 425 | 0.0 | 672 |
| MS.gene51436.t1 | MTR_3g065540 | 65.217 | 115 | 13 | 1 | 40 | 154 | 14 | 101 | 9.68e-41 | 142 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51436.t1 | AT5G25260 | 75.105 | 474 | 106 | 2 | 1 | 474 | 1 | 462 | 0.0 | 737 |
| MS.gene51436.t1 | AT5G25250 | 75.053 | 473 | 104 | 2 | 1 | 473 | 1 | 459 | 0.0 | 726 |
| MS.gene51436.t1 | AT5G64870 | 71.822 | 472 | 122 | 1 | 2 | 473 | 3 | 463 | 0.0 | 663 |
Find 116 sgRNAs with CRISPR-Local
Find 151 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGAATATTTCTCATATTT+AGG | 0.103686 | 1.3:+52979479 | MS.gene51436:CDS |
| TTGAACCTAAGATTAGTATT+TGG | 0.251111 | 1.3:+52980888 | MS.gene51436:CDS |
| CGGAATAACGGAAGGTTCTA+TGG | 0.257659 | 1.3:+52980934 | MS.gene51436:CDS |
| CTGCTAAAGCTGTGGCTCTA+AGG | 0.272737 | 1.3:+52979807 | MS.gene51436:CDS |
| AGGGATTACTTGATGATAAA+TGG | 0.295084 | 1.3:+52980815 | MS.gene51436:CDS |
| ATGAATATTTCTCATATTTA+GGG | 0.305111 | 1.3:+52979480 | MS.gene51436:CDS |
| GTGAAGTTGGCTCGAAATCT+AGG | 0.314615 | 1.3:+52979567 | MS.gene51436:CDS |
| TTTAGGTACAAGAGGCTAAC+TGG | 0.315931 | 1.3:+52980561 | MS.gene51436:intron |
| TTAGTCCAAATACTAATCTT+AGG | 0.318195 | 1.3:-52980893 | None:intergenic |
| CTTCCCGCTGTCTTCACAAT+TGG | 0.324959 | 1.3:+52979188 | MS.gene51436:CDS |
| ACAAGGAGGGATTTAGAGTT+AGG | 0.330276 | 1.3:+52979669 | MS.gene51436:CDS |
| CATGTTGCCTCCTGCTTGGA+TGG | 0.342126 | 1.3:+52981027 | MS.gene51436:CDS |
| TGTAAATCAATAACCCGAAT+TGG | 0.349196 | 1.3:-52979421 | None:intergenic |
| GAAACGACTACACAGCTCTA+AGG | 0.361629 | 1.3:+52980795 | MS.gene51436:CDS |
| AAGATTAGTATTTGGACTAA+TGG | 0.361897 | 1.3:+52980896 | MS.gene51436:CDS |
| CAATGCGAATGTTAAGCAAT+TGG | 0.388576 | 1.3:+52979442 | MS.gene51436:CDS |
| CAACTCGAACTAAACCAATT+CGG | 0.390858 | 1.3:+52979407 | MS.gene51436:CDS |
| ATCAAAATCAAACGATGTAC+AGG | 0.393868 | 1.3:+52978994 | None:intergenic |
| TGGTCCTCGTGTTGACGATC+AGG | 0.407219 | 1.3:+52979208 | MS.gene51436:CDS |
| TCAAACTTGCAAAGAAATCA+TGG | 0.416941 | 1.3:+52979069 | MS.gene51436:CDS |
| AACTCGAACTAAACCAATTC+GGG | 0.427281 | 1.3:+52979408 | MS.gene51436:CDS |
| TCCGAGTACCTGGTGATAAC+CGG | 0.437519 | 1.3:+52979029 | MS.gene51436:CDS |
| GATGTCTTCGATTCCAGCTC+CGG | 0.437947 | 1.3:-52979048 | None:intergenic |
| GAAGAAAGCGGCTTGGACTA+AGG | 0.439613 | 1.3:+52979760 | MS.gene51436:CDS |
| AGCAATTCTGTATGAGAAGA+AGG | 0.462456 | 1.3:+52980613 | MS.gene51436:CDS |
| AAATCAGTTTAGCGTATTTG+AGG | 0.472961 | 1.3:-52979238 | None:intergenic |
| TTTAGGGCAAAAGACGCAAA+TGG | 0.491891 | 1.3:+52979496 | MS.gene51436:CDS |
| AAGACTGTCCATGAGCAAAC+AGG | 0.492575 | 1.3:+52981004 | MS.gene51436:CDS |
| TGGAAGCAGCGAATCAAGCT+AGG | 0.499263 | 1.3:+52979516 | MS.gene51436:CDS |
| TTGGACTAAGGCGGCTCAAG+TGG | 0.501148 | 1.3:+52979772 | MS.gene51436:CDS |
| TGCTAAAGCTGTGGCTCTAA+GGG | 0.501192 | 1.3:+52979808 | MS.gene51436:CDS |
| TGCTTCGATGACCATGGAAG+AGG | 0.501642 | 1.3:+52979337 | MS.gene51436:CDS |
| CAGGCATGTTGCCTCCTGCT+TGG | 0.503335 | 1.3:+52981023 | MS.gene51436:CDS |
| AGCAAAAGCATCCGAGTACC+TGG | 0.509436 | 1.3:+52979019 | MS.gene51436:CDS |
| TAGAGTTAGGACTGAAGTGA+AGG | 0.517399 | 1.3:+52979682 | MS.gene51436:CDS |
| GCTAAGATGAAAGGTGAAGT+TGG | 0.517494 | 1.3:+52979554 | MS.gene51436:CDS |
| CATGTCAAGGAACTAGTTCA+AGG | 0.517510 | 1.3:+52979284 | MS.gene51436:CDS |
| GCAACATGCCTGTTTGCTCA+TGG | 0.521020 | 1.3:-52981012 | None:intergenic |
| ATGTTGCCTCCTGCTTGGAT+GGG | 0.522936 | 1.3:+52981028 | MS.gene51436:CDS |
| GTTATTGCTATGCAGAGGGC+TGG | 0.525373 | 1.3:+52979638 | MS.gene51436:CDS |
| TACCTGGTGATAACCGGAGC+TGG | 0.525647 | 1.3:+52979035 | MS.gene51436:CDS |
| ATGGGCATGAAAGAGGTTGC+TGG | 0.526365 | 1.3:+52980953 | MS.gene51436:CDS |
| AAGCAATTGGTGGATGTGCC+TGG | 0.526695 | 1.3:+52979455 | MS.gene51436:CDS |
| TCCTCTGAAAACCTCTTCCA+TGG | 0.530446 | 1.3:-52979348 | None:intergenic |
| CGAAAGTTATTGCTATGCAG+AGG | 0.532272 | 1.3:+52979633 | MS.gene51436:CDS |
| GGCTCAAGTGGCTGAAGTCG+AGG | 0.533715 | 1.3:+52979784 | MS.gene51436:CDS |
| ATTAGTATTTGGACTAATGG+AGG | 0.534214 | 1.3:+52980899 | MS.gene51436:CDS |
| TTCCAGCTCCGGTTATCACC+AGG | 0.538435 | 1.3:-52979037 | None:intergenic |
| TGGTGGCATGTTTCAAGAGA+TGG | 0.539247 | 1.3:+52980835 | MS.gene51436:CDS |
| TCCGGTTATCACCAGGTACT+CGG | 0.542656 | 1.3:-52979030 | None:intergenic |
| GGCTGAGGCTAATTCTGAGT+TGG | 0.544080 | 1.3:+52979733 | MS.gene51436:CDS |
| TGACAATGGAGGCGGAATAA+CGG | 0.546090 | 1.3:+52980922 | MS.gene51436:CDS |
| GCAGAAGGGATTGTGACACT+TGG | 0.546780 | 1.3:+52980728 | MS.gene51436:CDS |
| CACCGTCTTCGACCTCTCAC+CGG | 0.548854 | 1.3:+52979112 | MS.gene51436:CDS |
| GATAAGGTTCCCATCCAAGC+AGG | 0.550974 | 1.3:-52981037 | None:intergenic |
| AATACACTTCTCAATGCACT+TGG | 0.557121 | 1.3:+52980773 | MS.gene51436:CDS |
| AAGAGAGGCTGAAGTGGCTG+AGG | 0.558698 | 1.3:+52979718 | MS.gene51436:CDS |
| TTGGATGGTTTAGGTACAAG+AGG | 0.561865 | 1.3:+52980553 | MS.gene51436:intron |
| CAAACTTGCAAAGAAATCAT+GGG | 0.562132 | 1.3:+52979070 | MS.gene51436:CDS |
| AGGTTCTATGGGCATGAAAG+AGG | 0.562875 | 1.3:+52980946 | MS.gene51436:CDS |
| TGCGAATGTTAAGCAATTGG+TGG | 0.563120 | 1.3:+52979445 | MS.gene51436:CDS |
| GGACCAATTGTGAAGACAGC+GGG | 0.564372 | 1.3:-52979191 | None:intergenic |
| CTCAACCTCACCTTGCAACT+CGG | 0.566348 | 1.3:-52979834 | None:intergenic |
| GGAATAACGGAAGGTTCTAT+GGG | 0.567693 | 1.3:+52980935 | MS.gene51436:CDS |
| ACTTCGAAGGTATAGTTCAC+CGG | 0.571447 | 1.3:-52979131 | None:intergenic |
| AAGACGGTGCAAGATTGACC+AGG | 0.574032 | 1.3:-52979098 | None:intergenic |
| AGGTATAGTTCACCGGTGAG+AGG | 0.574045 | 1.3:-52979124 | None:intergenic |
| AGTTGCAAGGTGAGGTTGAG+AGG | 0.575856 | 1.3:+52979837 | MS.gene51436:CDS |
| TTAGGTACAAGAGGCTAACT+GGG | 0.579786 | 1.3:+52980562 | MS.gene51436:intron |
| TGAAGTTGGCTCGAAATCTA+GGG | 0.579862 | 1.3:+52979568 | MS.gene51436:CDS |
| GTGACACTTGGGAATGCTCA+AGG | 0.583871 | 1.3:+52980740 | MS.gene51436:CDS |
| TGGCGAAGAAGAAAGCGGCT+TGG | 0.584288 | 1.3:+52979753 | MS.gene51436:CDS |
| CCTCGTTGCTTCGATGACCA+TGG | 0.584427 | 1.3:+52979331 | MS.gene51436:CDS |
| TCAGTTTAGCGTATTTGAGG+AGG | 0.587438 | 1.3:-52979235 | None:intergenic |
| GAATCAAAGAGAGGCTGAAG+TGG | 0.589954 | 1.3:+52979712 | MS.gene51436:CDS |
| AAACGACTACACAGCTCTAA+GGG | 0.592700 | 1.3:+52980796 | MS.gene51436:CDS |
| CTAAGGGAAGCCGAGTTGCA+AGG | 0.593610 | 1.3:+52979824 | MS.gene51436:CDS |
| CAGAAGGGATTGTGACACTT+GGG | 0.598815 | 1.3:+52980729 | MS.gene51436:CDS |
| TCTGTATGAGAAGAAGGCAG+AGG | 0.600808 | 1.3:+52980619 | MS.gene51436:CDS |
| ACTCATGGCTTGAACTTCGA+AGG | 0.601319 | 1.3:-52979144 | None:intergenic |
| AATGGAGGTGACAATGGAGG+CGG | 0.607583 | 1.3:+52980914 | MS.gene51436:CDS |
| TGGACTAATGGAGGTGACAA+TGG | 0.609237 | 1.3:+52980908 | MS.gene51436:CDS |
| GCTGGAGAGAGTGACAAGGA+GGG | 0.609527 | 1.3:+52979656 | MS.gene51436:CDS |
| CTAGTTCAAGGAATCATCGA+AGG | 0.612313 | 1.3:+52979296 | MS.gene51436:CDS |
| GTGGCAGAAGCTAAGATGAA+AGG | 0.614706 | 1.3:+52979545 | MS.gene51436:CDS |
| GGCTGGAGAGAGTGACAAGG+AGG | 0.627665 | 1.3:+52979655 | MS.gene51436:CDS |
| CACCGGTGAGAGGTCGAAGA+CGG | 0.628279 | 1.3:-52979114 | None:intergenic |
| AAGACAGCGGGAAGAACGAA+AGG | 0.630029 | 1.3:-52979179 | None:intergenic |
| GGAAGCAGCGAATCAAGCTA+GGG | 0.630802 | 1.3:+52979517 | MS.gene51436:CDS |
| TAGTTCAAGGAATCATCGAA+GGG | 0.630851 | 1.3:+52979297 | MS.gene51436:CDS |
| GAAAGTTATTGCTATGCAGA+GGG | 0.630907 | 1.3:+52979634 | MS.gene51436:CDS |
| ATCAATGCTGAGGCAGTACG+TGG | 0.635980 | 1.3:+52980863 | MS.gene51436:CDS |
| TATGAGAAATATTCATGACC+AGG | 0.636387 | 1.3:-52979473 | None:intergenic |
| TCAAAATCAAACGATGTACA+GGG | 0.641066 | 1.3:+52978995 | None:intergenic |
| TAGTGTTGAGTATGAAACCA+AGG | 0.644971 | 1.3:+52979913 | MS.gene51436:CDS |
| GAGGGCTGGAGAGAGTGACA+AGG | 0.646522 | 1.3:+52979652 | MS.gene51436:CDS |
| GGAAGCCGAGTTGCAAGGTG+AGG | 0.648282 | 1.3:+52979829 | MS.gene51436:CDS |
| TGAGTTGGCGAAGAAGAAAG+CGG | 0.653130 | 1.3:+52979748 | MS.gene51436:CDS |
| TAAACTCTCGAATCATGTCA+AGG | 0.655320 | 1.3:+52979271 | MS.gene51436:CDS |
| TGGACAGTCTTAAACAGAGG+TGG | 0.656626 | 1.3:-52980992 | None:intergenic |
| GATTACTTGATGATAAATGG+TGG | 0.658453 | 1.3:+52980818 | MS.gene51436:CDS |
| TCATGGACAGTCTTAAACAG+AGG | 0.660499 | 1.3:-52980995 | None:intergenic |
| AGTCGAGGCTGCTAAAGCTG+TGG | 0.666475 | 1.3:+52979799 | MS.gene51436:CDS |
| AATGGAGGCGGAATAACGGA+AGG | 0.668536 | 1.3:+52980926 | MS.gene51436:CDS |
| AAGGTTCCCATCCAAGCAGG+AGG | 0.669932 | 1.3:-52981034 | None:intergenic |
| GTTGGCTCGAAATCTAGGGA+AGG | 0.671253 | 1.3:+52979572 | MS.gene51436:CDS |
| ACTAATGGAGGTGACAATGG+AGG | 0.677352 | 1.3:+52980911 | MS.gene51436:CDS |
| TGATTCGAGAGTTTATCATG+AGG | 0.680428 | 1.3:-52979263 | None:intergenic |
| GATGGCTAAGATCAATGCTG+AGG | 0.682349 | 1.3:+52980853 | MS.gene51436:CDS |
| GAATCAAGCTAGGGTTGACG+TGG | 0.682564 | 1.3:+52979526 | MS.gene51436:CDS |
| CTTTCCTGATCGTCAACACG+AGG | 0.689163 | 1.3:-52979212 | None:intergenic |
| AGACGGTGCAAGATTGACCA+GGG | 0.716272 | 1.3:-52979097 | None:intergenic |
| AGTTCAAGGAATCATCGAAG+GGG | 0.721843 | 1.3:+52979298 | MS.gene51436:CDS |
| AGGACCAATTGTGAAGACAG+CGG | 0.726189 | 1.3:-52979192 | None:intergenic |
| CCATGGTCATCGAAGCAACG+AGG | 0.730105 | 1.3:-52979331 | None:intergenic |
| GAAAGCGGCTTGGACTAAGG+CGG | 0.747622 | 1.3:+52979763 | MS.gene51436:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATTAATAAATGAAAGA+AGG | - | chr1.3:52979960-52979979 | None:intergenic | 10.0% |
| !!! | AATAATACTTTAATATCTTT+TGG | + | chr1.3:52980012-52980031 | MS.gene51436:intron | 10.0% |
| !! | ATGAATATTTCTCATATTTA+GGG | + | chr1.3:52979480-52979499 | MS.gene51436:CDS | 15.0% |
| !! | CATTATAAAACTAAATCATA+TGG | + | chr1.3:52980187-52980206 | MS.gene51436:intron | 15.0% |
| !!! | AATGTTTATTTTTTAAGTAC+TGG | + | chr1.3:52980522-52980541 | MS.gene51436:intron | 15.0% |
| !!! | TGTTCTAAATTAATTTTGTT+AGG | + | chr1.3:52980243-52980262 | MS.gene51436:intron | 15.0% |
| !! | CATGAATATTTCTCATATTT+AGG | + | chr1.3:52979479-52979498 | MS.gene51436:CDS | 20.0% |
| !! | TCATGTTAAAAAAATTGACA+AGG | - | chr1.3:52980443-52980462 | None:intergenic | 20.0% |
| !! | TTAAAAAAATTGACAAGGTT+TGG | - | chr1.3:52980438-52980457 | None:intergenic | 20.0% |
| !!! | TATGGAATAGTCAAATTTTT+TGG | + | chr1.3:52980129-52980148 | MS.gene51436:intron | 20.0% |
| !!! | TTAATATGTTATATGGACTA+TGG | + | chr1.3:52980111-52980130 | MS.gene51436:intron | 20.0% |
| ! | AAAACAAAACGATTGACATA+TGG | + | chr1.3:52980365-52980384 | MS.gene51436:intron | 25.0% |
| ! | AAGATTAGTATTTGGACTAA+TGG | + | chr1.3:52980896-52980915 | MS.gene51436:CDS | 25.0% |
| ! | ACAAAATAATAGCAAGCAAA+GGG | - | chr1.3:52980294-52980313 | None:intergenic | 25.0% |
| ! | ATTGACATATGGTATGTAAA+TGG | + | chr1.3:52980376-52980395 | MS.gene51436:intron | 25.0% |
| ! | GAAGTAAAACATAACAAAGT+AGG | + | chr1.3:52980475-52980494 | MS.gene51436:intron | 25.0% |
| ! | TTAGTCCAAATACTAATCTT+AGG | - | chr1.3:52980896-52980915 | None:intergenic | 25.0% |
| ! | TTGAACCTAAGATTAGTATT+TGG | + | chr1.3:52980888-52980907 | MS.gene51436:CDS | 25.0% |
| !!! | GCTATTATTTTGTGTACTTT+TGG | + | chr1.3:52980301-52980320 | MS.gene51436:intron | 25.0% |
| !!! | TCACTGTAGTTAAAGTTTTT+TGG | + | chr1.3:52980046-52980065 | MS.gene51436:intron | 25.0% |
| !!! | TTAAGTACTGGTTGAAATTT+TGG | + | chr1.3:52980534-52980553 | MS.gene51436:intron | 25.0% |
| AAATCAGTTTAGCGTATTTG+AGG | - | chr1.3:52979241-52979260 | None:intergenic | 30.0% | |
| AAGAAGGAGTTATATTTGCA+TGG | - | chr1.3:52979944-52979963 | None:intergenic | 30.0% | |
| ATTAGTATTTGGACTAATGG+AGG | + | chr1.3:52980899-52980918 | MS.gene51436:CDS | 30.0% | |
| CAAACTTGCAAAGAAATCAT+GGG | + | chr1.3:52979070-52979089 | MS.gene51436:CDS | 30.0% | |
| CACAAAATAATAGCAAGCAA+AGG | - | chr1.3:52980295-52980314 | None:intergenic | 30.0% | |
| GGCAAATAGATTGAAGAATA+TGG | + | chr1.3:52980397-52980416 | MS.gene51436:intron | 30.0% | |
| TATGAGAAATATTCATGACC+AGG | - | chr1.3:52979476-52979495 | None:intergenic | 30.0% | |
| TCAAACTTGCAAAGAAATCA+TGG | + | chr1.3:52979069-52979088 | MS.gene51436:CDS | 30.0% | |
| TGTAAATCAATAACCCGAAT+TGG | - | chr1.3:52979424-52979443 | None:intergenic | 30.0% | |
| ! | AAAAATTGACAAGGTTTGGT+TGG | - | chr1.3:52980434-52980453 | None:intergenic | 30.0% |
| ! | AGGGATTACTTGATGATAAA+TGG | + | chr1.3:52980815-52980834 | MS.gene51436:CDS | 30.0% |
| ! | GATTACTTGATGATAAATGG+TGG | + | chr1.3:52980818-52980837 | MS.gene51436:CDS | 30.0% |
| ! | GTTGAAATTTTGGATGGTTT+AGG | + | chr1.3:52980544-52980563 | MS.gene51436:intron | 30.0% |
| AACTCGAACTAAACCAATTC+GGG | + | chr1.3:52979408-52979427 | MS.gene51436:CDS | 35.0% | |
| AATACACTTCTCAATGCACT+TGG | + | chr1.3:52980773-52980792 | MS.gene51436:CDS | 35.0% | |
| AGCAATTCTGTATGAGAAGA+AGG | + | chr1.3:52980613-52980632 | MS.gene51436:CDS | 35.0% | |
| CAAAGAAAAAAGAGGCAGAA+GGG | + | chr1.3:52980714-52980733 | MS.gene51436:CDS | 35.0% | |
| CAACTCGAACTAAACCAATT+CGG | + | chr1.3:52979407-52979426 | MS.gene51436:CDS | 35.0% | |
| CAATGCGAATGTTAAGCAAT+TGG | + | chr1.3:52979442-52979461 | MS.gene51436:CDS | 35.0% | |
| GAAAGTTATTGCTATGCAGA+GGG | + | chr1.3:52979634-52979653 | MS.gene51436:CDS | 35.0% | |
| GCTATACGCAAAGAAAAAAG+AGG | + | chr1.3:52980706-52980725 | MS.gene51436:CDS | 35.0% | |
| TAAACTCTCGAATCATGTCA+AGG | + | chr1.3:52979271-52979290 | MS.gene51436:CDS | 35.0% | |
| TAGTTCAAGGAATCATCGAA+GGG | + | chr1.3:52979297-52979316 | MS.gene51436:CDS | 35.0% | |
| TGATTCGAGAGTTTATCATG+AGG | - | chr1.3:52979266-52979285 | None:intergenic | 35.0% | |
| ! | AAGAACGAAAGGCAGTTTTT+CGG | - | chr1.3:52979171-52979190 | None:intergenic | 35.0% |
| ! | ATATTTGCATGGACTAACCT+TGG | - | chr1.3:52979933-52979952 | None:intergenic | 35.0% |
| ! | TAGTGTTGAGTATGAAACCA+AGG | + | chr1.3:52979913-52979932 | MS.gene51436:CDS | 35.0% |
| ! | TTAAGAGCTTTTGTCGGATA+AGG | - | chr1.3:52981056-52981075 | None:intergenic | 35.0% |
| !! | GGTTTTTGAGAATCAAAGAG+AGG | + | chr1.3:52979703-52979722 | MS.gene51436:CDS | 35.0% |
| !!! | GTACTGGTTGAAATTTTGGA+TGG | + | chr1.3:52980538-52980557 | MS.gene51436:intron | 35.0% |
| AATGTGCCAAGTCTAAATCG+TGG | + | chr1.3:52980266-52980285 | MS.gene51436:intron | 40.0% | |
| AGCAAGTGCTATGTTTCGTT+TGG | + | chr1.3:52980340-52980359 | MS.gene51436:intron | 40.0% | |
| AGTTCAAGGAATCATCGAAG+GGG | + | chr1.3:52979298-52979317 | MS.gene51436:CDS | 40.0% | |
| CATGTCAAGGAACTAGTTCA+AGG | + | chr1.3:52979284-52979303 | MS.gene51436:CDS | 40.0% | |
| CGAAAGTTATTGCTATGCAG+AGG | + | chr1.3:52979633-52979652 | MS.gene51436:CDS | 40.0% | |
| CTAGTTCAAGGAATCATCGA+AGG | + | chr1.3:52979296-52979315 | MS.gene51436:CDS | 40.0% | |
| GAATGCAGCAAAAATTGACG+CGG | + | chr1.3:52979607-52979626 | MS.gene51436:CDS | 40.0% | |
| GCAAAGAAAAAAGAGGCAGA+AGG | + | chr1.3:52980713-52980732 | MS.gene51436:CDS | 40.0% | |
| GCTAAGATGAAAGGTGAAGT+TGG | + | chr1.3:52979554-52979573 | MS.gene51436:CDS | 40.0% | |
| TAGAGTTAGGACTGAAGTGA+AGG | + | chr1.3:52979682-52979701 | MS.gene51436:CDS | 40.0% | |
| TCAGTTTAGCGTATTTGAGG+AGG | - | chr1.3:52979238-52979257 | None:intergenic | 40.0% | |
| TCATGGACAGTCTTAAACAG+AGG | - | chr1.3:52980998-52981017 | None:intergenic | 40.0% | |
| TGCGAATGTTAAGCAATTGG+TGG | + | chr1.3:52979445-52979464 | MS.gene51436:CDS | 40.0% | |
| TTAGGTACAAGAGGCTAACT+GGG | + | chr1.3:52980562-52980581 | MS.gene51436:intron | 40.0% | |
| TTGGATGGTTTAGGTACAAG+AGG | + | chr1.3:52980553-52980572 | MS.gene51436:intron | 40.0% | |
| TTTAGGTACAAGAGGCTAAC+TGG | + | chr1.3:52980561-52980580 | MS.gene51436:intron | 40.0% | |
| ! | AAACGACTACACAGCTCTAA+GGG | + | chr1.3:52980796-52980815 | MS.gene51436:CDS | 40.0% |
| ! | AAGAAATCATGGGTTTTCCC+TGG | + | chr1.3:52979080-52979099 | MS.gene51436:CDS | 40.0% |
| ! | ACAAGGAGGGATTTAGAGTT+AGG | + | chr1.3:52979669-52979688 | MS.gene51436:CDS | 40.0% |
| ! | ACTTCGAAGGTATAGTTCAC+CGG | - | chr1.3:52979134-52979153 | None:intergenic | 40.0% |
| ! | GGAATAACGGAAGGTTCTAT+GGG | + | chr1.3:52980935-52980954 | MS.gene51436:CDS | 40.0% |
| ! | TTTAGGGCAAAAGACGCAAA+TGG | + | chr1.3:52979496-52979515 | MS.gene51436:CDS | 40.0% |
| !! | TGAAGTTGGCTCGAAATCTA+GGG | + | chr1.3:52979568-52979587 | MS.gene51436:CDS | 40.0% |
| AAGACTGTCCATGAGCAAAC+AGG | + | chr1.3:52981004-52981023 | MS.gene51436:CDS | 45.0% | |
| ACTAATGGAGGTGACAATGG+AGG | + | chr1.3:52980911-52980930 | MS.gene51436:CDS | 45.0% | |
| ACTCATGGCTTGAACTTCGA+AGG | - | chr1.3:52979147-52979166 | None:intergenic | 45.0% | |
| AGGACCAATTGTGAAGACAG+CGG | - | chr1.3:52979195-52979214 | None:intergenic | 45.0% | |
| AGGGATCCACGATTTAGACT+TGG | - | chr1.3:52980275-52980294 | None:intergenic | 45.0% | |
| AGGTTCTATGGGCATGAAAG+AGG | + | chr1.3:52980946-52980965 | MS.gene51436:CDS | 45.0% | |
| CAGAAGGGATTGTGACACTT+GGG | + | chr1.3:52980729-52980748 | MS.gene51436:CDS | 45.0% | |
| GAAACGACTACACAGCTCTA+AGG | + | chr1.3:52980795-52980814 | MS.gene51436:CDS | 45.0% | |
| GAATCAAAGAGAGGCTGAAG+TGG | + | chr1.3:52979712-52979731 | MS.gene51436:CDS | 45.0% | |
| GATGGCTAAGATCAATGCTG+AGG | + | chr1.3:52980853-52980872 | MS.gene51436:CDS | 45.0% | |
| GTGGCAGAAGCTAAGATGAA+AGG | + | chr1.3:52979545-52979564 | MS.gene51436:CDS | 45.0% | |
| TCTGTATGAGAAGAAGGCAG+AGG | + | chr1.3:52980619-52980638 | MS.gene51436:CDS | 45.0% | |
| TGACAATGGAGGCGGAATAA+CGG | + | chr1.3:52980922-52980941 | MS.gene51436:CDS | 45.0% | |
| TGGACAGTCTTAAACAGAGG+TGG | - | chr1.3:52980995-52981014 | None:intergenic | 45.0% | |
| TGGACTAATGGAGGTGACAA+TGG | + | chr1.3:52980908-52980927 | MS.gene51436:CDS | 45.0% | |
| TGGTGGCATGTTTCAAGAGA+TGG | + | chr1.3:52980835-52980854 | MS.gene51436:CDS | 45.0% | |
| ! | ACCATGGAAGAGGTTTTCAG+AGG | + | chr1.3:52979347-52979366 | MS.gene51436:CDS | 45.0% |
| ! | CGGAATAACGGAAGGTTCTA+TGG | + | chr1.3:52980934-52980953 | MS.gene51436:CDS | 45.0% |
| ! | TCCTCTGAAAACCTCTTCCA+TGG | - | chr1.3:52979351-52979370 | None:intergenic | 45.0% |
| ! | TGAGTTGGCGAAGAAGAAAG+CGG | + | chr1.3:52979748-52979767 | MS.gene51436:CDS | 45.0% |
| !! | GTGAAGTTGGCTCGAAATCT+AGG | + | chr1.3:52979567-52979586 | MS.gene51436:CDS | 45.0% |
| !! | TGCTAAAGCTGTGGCTCTAA+GGG | + | chr1.3:52979808-52979827 | MS.gene51436:CDS | 45.0% |
| !!! | TTATTTTTTAATATGTTATA+TGG | + | chr1.3:52980104-52980123 | MS.gene51436:intron | 5.0% |
| AAGACAGCGGGAAGAACGAA+AGG | - | chr1.3:52979182-52979201 | None:intergenic | 50.0% | |
| AAGACGGTGCAAGATTGACC+AGG | - | chr1.3:52979101-52979120 | None:intergenic | 50.0% | |
| AATGGAGGTGACAATGGAGG+CGG | + | chr1.3:52980914-52980933 | MS.gene51436:CDS | 50.0% | |
| AGACGGTGCAAGATTGACCA+GGG | - | chr1.3:52979100-52979119 | None:intergenic | 50.0% | |
| AGGTATAGTTCACCGGTGAG+AGG | - | chr1.3:52979127-52979146 | None:intergenic | 50.0% | |
| AGTTGCAAGGTGAGGTTGAG+AGG | + | chr1.3:52979837-52979856 | MS.gene51436:CDS | 50.0% | |
| ATCAATGCTGAGGCAGTACG+TGG | + | chr1.3:52980863-52980882 | MS.gene51436:CDS | 50.0% | |
| ATGGGCATGAAAGAGGTTGC+TGG | + | chr1.3:52980953-52980972 | MS.gene51436:CDS | 50.0% | |
| ATGTTGCCTCCTGCTTGGAT+GGG | + | chr1.3:52981028-52981047 | MS.gene51436:CDS | 50.0% | |
| CTCAACCTCACCTTGCAACT+CGG | - | chr1.3:52979837-52979856 | None:intergenic | 50.0% | |
| CTTCCCGCTGTCTTCACAAT+TGG | + | chr1.3:52979188-52979207 | MS.gene51436:CDS | 50.0% | |
| CTTTCCTGATCGTCAACACG+AGG | - | chr1.3:52979215-52979234 | None:intergenic | 50.0% | |
| GAATCAAGCTAGGGTTGACG+TGG | + | chr1.3:52979526-52979545 | MS.gene51436:CDS | 50.0% | |
| GATAAGGTTCCCATCCAAGC+AGG | - | chr1.3:52981040-52981059 | None:intergenic | 50.0% | |
| GATGTCTTCGATTCCAGCTC+CGG | - | chr1.3:52979051-52979070 | None:intergenic | 50.0% | |
| GCAACATGCCTGTTTGCTCA+TGG | - | chr1.3:52981015-52981034 | None:intergenic | 50.0% | |
| GCAGAAGGGATTGTGACACT+TGG | + | chr1.3:52980728-52980747 | MS.gene51436:CDS | 50.0% | |
| GGAAGCAGCGAATCAAGCTA+GGG | + | chr1.3:52979517-52979536 | MS.gene51436:CDS | 50.0% | |
| GGACCAATTGTGAAGACAGC+GGG | - | chr1.3:52979194-52979213 | None:intergenic | 50.0% | |
| GGCTGAGGCTAATTCTGAGT+TGG | + | chr1.3:52979733-52979752 | MS.gene51436:CDS | 50.0% | |
| GTGACACTTGGGAATGCTCA+AGG | + | chr1.3:52980740-52980759 | MS.gene51436:CDS | 50.0% | |
| GTTATTGCTATGCAGAGGGC+TGG | + | chr1.3:52979638-52979657 | MS.gene51436:CDS | 50.0% | |
| TCCGAGTACCTGGTGATAAC+CGG | + | chr1.3:52979029-52979048 | MS.gene51436:CDS | 50.0% | |
| TCCGGTTATCACCAGGTACT+CGG | - | chr1.3:52979033-52979052 | None:intergenic | 50.0% | |
| TGCTTCGATGACCATGGAAG+AGG | + | chr1.3:52979337-52979356 | MS.gene51436:CDS | 50.0% | |
| TGGAAGCAGCGAATCAAGCT+AGG | + | chr1.3:52979516-52979535 | MS.gene51436:CDS | 50.0% | |
| ! | AAGCAATTGGTGGATGTGCC+TGG | + | chr1.3:52979455-52979474 | MS.gene51436:CDS | 50.0% |
| ! | AATGGAGGCGGAATAACGGA+AGG | + | chr1.3:52980926-52980945 | MS.gene51436:CDS | 50.0% |
| ! | CTGCTAAAGCTGTGGCTCTA+AGG | + | chr1.3:52979807-52979826 | MS.gene51436:CDS | 50.0% |
| ! | GAAGAAAGCGGCTTGGACTA+AGG | + | chr1.3:52979760-52979779 | MS.gene51436:CDS | 50.0% |
| !! | AGCAAAAGCATCCGAGTACC+TGG | + | chr1.3:52979019-52979038 | MS.gene51436:CDS | 50.0% |
| !! | AGGCAGTTTTTCGGCACTCA+TGG | - | chr1.3:52979162-52979181 | None:intergenic | 50.0% |
| !! | GTTGGCTCGAAATCTAGGGA+AGG | + | chr1.3:52979572-52979591 | MS.gene51436:CDS | 50.0% |
| AAGAGAGGCTGAAGTGGCTG+AGG | + | chr1.3:52979718-52979737 | MS.gene51436:CDS | 55.0% | |
| AAGGTTCCCATCCAAGCAGG+AGG | - | chr1.3:52981037-52981056 | None:intergenic | 55.0% | |
| AGTCGAGGCTGCTAAAGCTG+TGG | + | chr1.3:52979799-52979818 | MS.gene51436:CDS | 55.0% | |
| CATGTTGCCTCCTGCTTGGA+TGG | + | chr1.3:52981027-52981046 | MS.gene51436:CDS | 55.0% | |
| CCATGGTCATCGAAGCAACG+AGG | - | chr1.3:52979334-52979353 | None:intergenic | 55.0% | |
| CCTCGTTGCTTCGATGACCA+TGG | + | chr1.3:52979331-52979350 | MS.gene51436:CDS | 55.0% | |
| CTAAGGGAAGCCGAGTTGCA+AGG | + | chr1.3:52979824-52979843 | MS.gene51436:CDS | 55.0% | |
| GCTGGAGAGAGTGACAAGGA+GGG | + | chr1.3:52979656-52979675 | MS.gene51436:CDS | 55.0% | |
| TACCTGGTGATAACCGGAGC+TGG | + | chr1.3:52979035-52979054 | MS.gene51436:CDS | 55.0% | |
| TGGCGAAGAAGAAAGCGGCT+TGG | + | chr1.3:52979753-52979772 | MS.gene51436:CDS | 55.0% | |
| TTCCAGCTCCGGTTATCACC+AGG | - | chr1.3:52979040-52979059 | None:intergenic | 55.0% | |
| TTGGACTAAGGCGGCTCAAG+TGG | + | chr1.3:52979772-52979791 | MS.gene51436:CDS | 55.0% | |
| ! | GAAAGCGGCTTGGACTAAGG+CGG | + | chr1.3:52979763-52979782 | MS.gene51436:CDS | 55.0% |
| ! | TGGTCCTCGTGTTGACGATC+AGG | + | chr1.3:52979208-52979227 | MS.gene51436:CDS | 55.0% |
| CACCGGTGAGAGGTCGAAGA+CGG | - | chr1.3:52979117-52979136 | None:intergenic | 60.0% | |
| CACCGTCTTCGACCTCTCAC+CGG | + | chr1.3:52979112-52979131 | MS.gene51436:CDS | 60.0% | |
| CAGGCATGTTGCCTCCTGCT+TGG | + | chr1.3:52981023-52981042 | MS.gene51436:CDS | 60.0% | |
| GAGGGCTGGAGAGAGTGACA+AGG | + | chr1.3:52979652-52979671 | MS.gene51436:CDS | 60.0% | |
| GGAAGCCGAGTTGCAAGGTG+AGG | + | chr1.3:52979829-52979848 | MS.gene51436:CDS | 60.0% | |
| GGCTCAAGTGGCTGAAGTCG+AGG | + | chr1.3:52979784-52979803 | MS.gene51436:CDS | 60.0% | |
| GGCTGGAGAGAGTGACAAGG+AGG | + | chr1.3:52979655-52979674 | MS.gene51436:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 52979008 | 52981075 | 52979008 | ID=MS.gene51436 |
| chr1.3 | mRNA | 52979008 | 52981075 | 52979008 | ID=MS.gene51436.t1;Parent=MS.gene51436 |
| chr1.3 | exon | 52979008 | 52979934 | 52979008 | ID=MS.gene51436.t1.exon1;Parent=MS.gene51436.t1 |
| chr1.3 | CDS | 52979008 | 52979934 | 52979008 | ID=cds.MS.gene51436.t1;Parent=MS.gene51436.t1 |
| chr1.3 | exon | 52980566 | 52981075 | 52980566 | ID=MS.gene51436.t1.exon2;Parent=MS.gene51436.t1 |
| chr1.3 | CDS | 52980566 | 52981075 | 52980566 | ID=cds.MS.gene51436.t1;Parent=MS.gene51436.t1 |
| Gene Sequence |
| Protein sequence |
