AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene055461

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055461.t1 MTR_5g007370 100.000 168 0 0 1 168 1 168 5.62e-124 353
MS.gene055461.t1 MTR_5g007370 98.148 54 1 0 173 226 246 299 8.29e-31 115
MS.gene055461.t1 MTR_4g478180 76.190 168 33 2 1 163 2 167 2.77e-91 273
MS.gene055461.t1 MTR_3g074520 76.510 149 29 1 1 143 1 149 2.33e-82 249
MS.gene055461.t1 MTR_5g029840 66.667 165 47 3 1 163 1 159 1.34e-72 224
MS.gene055461.t1 MTR_6g012690 70.677 133 39 0 1 133 1 133 2.10e-68 214
MS.gene055461.t1 MTR_4g091490 53.171 205 73 4 1 195 1 192 2.71e-68 214
MS.gene055461.t1 MTR_2g089620 69.065 139 43 0 1 139 1 139 4.66e-68 212
MS.gene055461.t1 MTR_2g011660 71.538 130 36 1 1 129 1 130 1.05e-67 212
MS.gene055461.t1 MTR_7g076740 70.543 129 37 1 1 128 1 129 7.86e-66 206
MS.gene055461.t1 MTR_7g011170 66.917 133 44 0 1 133 1 133 1.74e-65 205
MS.gene055461.t1 MTR_4g082290 67.424 132 43 0 1 132 1 132 4.93e-64 204
MS.gene055461.t1 MTR_8g031360 70.769 130 36 2 1 128 1 130 5.22e-64 201
MS.gene055461.t1 MTR_4g082230 66.667 132 44 0 1 132 1 132 1.21e-62 201
MS.gene055461.t1 MTR_7g115650 70.339 118 35 0 1 118 1 118 3.25e-60 188
MS.gene055461.t1 MTR_7g110830 48.611 216 102 3 12 221 12 224 7.13e-60 192
MS.gene055461.t1 MTR_1g076150 72.881 118 32 0 1 118 1 118 9.98e-60 189
MS.gene055461.t1 MTR_5g078140 64.844 128 45 0 1 128 1 128 4.30e-59 189
MS.gene055461.t1 MTR_3g065440 66.142 127 43 0 1 127 1 127 6.63e-59 188
MS.gene055461.t1 MTR_4g102380 64.062 128 46 0 1 128 1 128 1.26e-58 186
MS.gene055461.t1 MTR_1g085040 68.333 120 38 0 12 131 12 131 1.72e-58 189
MS.gene055461.t1 MTR_1g112760 66.400 125 42 0 12 136 13 137 2.07e-58 184
MS.gene055461.t1 MTR_4g073420 52.071 169 81 0 1 169 1 169 3.05e-58 186
MS.gene055461.t1 MTR_1g085640 68.333 120 38 0 12 131 12 131 3.08e-58 189
MS.gene055461.t1 MTR_1g043050 42.975 242 121 4 1 225 1 242 3.32e-58 185
MS.gene055461.t1 MTR_1g100653 68.644 118 37 0 1 118 1 118 1.23e-57 185
MS.gene055461.t1 MTR_3g077110 65.600 125 43 0 12 136 12 136 1.48e-57 186
MS.gene055461.t1 MTR_4g105130 67.500 120 39 0 12 131 12 131 3.00e-57 186
MS.gene055461.t1 MTR_3g097450 56.579 152 61 1 1 152 1 147 3.61e-57 184
MS.gene055461.t1 MTR_5g079670 61.111 126 49 0 2 127 1 126 5.58e-57 180
MS.gene055461.t1 MTR_7g096930 67.797 118 38 0 1 118 1 118 3.87e-56 180
MS.gene055461.t1 MTR_1g043080 67.521 117 38 0 1 117 1 117 8.15e-56 179
MS.gene055461.t1 MTR_8g095390 60.938 128 50 0 1 128 1 128 1.01e-55 180
MS.gene055461.t1 MTR_6g009430 54.225 142 65 0 1 142 1 142 1.16e-55 181
MS.gene055461.t1 MTR_2g064160 66.087 115 39 0 12 126 11 125 1.49e-55 180
MS.gene055461.t1 MTR_7g010210 66.379 116 39 0 1 116 1 116 1.28e-54 176
MS.gene055461.t1 MTR_7g010210 66.379 116 39 0 1 116 1 116 1.48e-54 177
MS.gene055461.t1 MTR_3g083540 61.290 124 48 0 5 128 34 157 2.68e-54 176
MS.gene055461.t1 MTR_3g461490 60.938 128 50 0 1 128 1 128 4.87e-54 176
MS.gene055461.t1 MTR_3g039990 63.025 119 44 0 1 119 2 120 1.14e-53 175
MS.gene055461.t1 MTR_4g121460 65.517 116 40 0 1 116 1 116 3.22e-53 174
MS.gene055461.t1 MTR_5g042030 61.667 120 46 0 11 130 6 125 9.80e-53 172
MS.gene055461.t1 MTR_7g087130 63.200 125 44 1 1 123 1 125 1.10e-52 173
MS.gene055461.t1 MTR_7g111290 66.667 123 41 0 12 134 12 134 1.22e-52 174
MS.gene055461.t1 MTR_7g117730 64.655 116 41 0 1 116 1 116 1.62e-52 170
MS.gene055461.t1 MTR_2g034790 64.655 116 41 0 1 116 1 116 4.04e-52 172
MS.gene055461.t1 MTR_0140s0030 62.931 116 43 0 1 116 2 117 9.31e-52 171
MS.gene055461.t1 MTR_0489s0020 62.931 116 43 0 1 116 2 117 9.31e-52 171
MS.gene055461.t1 MTR_2g089450 62.712 118 44 0 1 118 1 118 2.25e-51 167
MS.gene055461.t1 MTR_8g027345 62.712 118 44 0 1 118 1 118 2.94e-51 168
MS.gene055461.t1 MTR_6g012180 63.964 111 40 0 1 111 1 111 9.27e-51 167
MS.gene055461.t1 MTR_4g485530 60.317 126 49 1 2 126 1 126 1.07e-50 164
MS.gene055461.t1 MTR_2g099740 61.017 118 46 0 8 125 8 125 1.49e-50 169
MS.gene055461.t1 MTR_8g017440 62.069 116 44 0 8 123 8 123 2.36e-50 167
MS.gene055461.t1 MTR_4g125520 63.025 119 44 0 1 119 1 119 5.79e-50 165
MS.gene055461.t1 MTR_4g057635 49.708 171 78 3 1 170 1 164 3.98e-49 164
MS.gene055461.t1 MTR_2g067420 66.972 109 36 0 3 111 5 113 4.86e-49 164
MS.gene055461.t1 MTR_8g098860 65.138 109 38 0 8 116 8 116 5.96e-49 163
MS.gene055461.t1 MTR_0251s0050 60.684 117 45 1 1 116 1 117 6.93e-49 161
MS.gene055461.t1 MTR_0008s0280 59.649 114 46 0 1 114 1 114 9.44e-49 160
MS.gene055461.t1 MTR_5g007300 84.091 88 14 0 1 88 53 140 1.01e-48 157
MS.gene055461.t1 MTR_0063s0090 62.832 113 42 0 1 113 1 113 1.08e-48 159
MS.gene055461.t1 MTR_8g017540 62.500 112 42 0 12 123 58 169 1.37e-48 164
MS.gene055461.t1 MTR_8g017500 61.607 112 43 0 12 123 12 123 1.78e-48 162
MS.gene055461.t1 MTR_0008s0470 61.017 118 45 1 1 117 1 118 2.02e-48 161
MS.gene055461.t1 MTR_1g017000 51.974 152 66 3 1 145 1 152 2.91e-48 159
MS.gene055461.t1 MTR_7g102110 54.610 141 60 3 1 140 1 138 3.31e-48 160
MS.gene055461.t1 MTR_0008s0390 60.169 118 46 1 1 117 1 118 6.38e-48 159
MS.gene055461.t1 MTR_5g010020 66.019 103 35 0 8 110 8 110 4.30e-47 159
MS.gene055461.t1 MTR_2g089420 59.322 118 47 1 1 118 1 117 3.53e-46 159
MS.gene055461.t1 MTR_3g103570 59.322 118 47 1 1 117 1 118 5.04e-46 156
MS.gene055461.t1 MTR_3g052450 61.261 111 43 0 8 118 36 146 7.20e-46 160
MS.gene055461.t1 MTR_1g017140 59.322 118 47 1 1 117 1 118 1.11e-45 155
MS.gene055461.t1 MTR_4g065017 52.778 144 55 2 2 132 1 144 1.11e-45 155
MS.gene055461.t1 MTR_5g014990 58.475 118 48 1 1 117 1 118 2.09e-45 154
MS.gene055461.t1 MTR_1g100667 64.423 104 37 0 13 116 14 117 4.62e-45 152
MS.gene055461.t1 MTR_2g097910 62.857 105 39 0 12 116 20 124 5.12e-45 153
MS.gene055461.t1 MTR_2g095520 60.360 111 43 1 1 110 1 111 1.11e-44 152
MS.gene055461.t1 MTR_3g052430 61.468 109 42 0 10 118 39 147 1.46e-44 156
MS.gene055461.t1 MTR_6g090405 59.322 118 47 1 1 117 1 118 1.79e-44 150
MS.gene055461.t1 MTR_1g086510 57.143 119 51 0 4 122 13 131 3.30e-44 149
MS.gene055461.t1 MTR_3g028740 63.303 109 40 0 8 116 18 126 3.56e-44 151
MS.gene055461.t1 MTR_3g011610 62.500 104 39 0 12 115 37 140 4.24e-44 155
MS.gene055461.t1 MTR_8g017340 61.062 113 43 1 12 123 12 124 5.27e-44 154
MS.gene055461.t1 MTR_1g110460 53.279 122 57 0 6 127 20 141 6.66e-44 150
MS.gene055461.t1 MTR_8g017390 62.617 107 39 1 12 117 12 118 6.91e-44 154
MS.gene055461.t1 MTR_6g006030 57.895 114 48 0 6 119 8 121 7.55e-44 147
MS.gene055461.t1 MTR_7g035075 58.407 113 47 0 6 118 8 120 7.58e-44 147
MS.gene055461.t1 MTR_1g073170 56.481 108 47 0 8 115 16 123 1.12e-43 147
MS.gene055461.t1 MTR_8g017350 61.062 113 43 1 12 123 12 124 1.87e-43 155
MS.gene055461.t1 MTR_1g045610 56.481 108 47 0 8 115 17 124 3.05e-43 147
MS.gene055461.t1 MTR_1g021230 64.423 104 37 0 12 115 57 160 4.94e-43 150
MS.gene055461.t1 MTR_4g100720 58.929 112 46 0 12 123 13 124 5.13e-43 143
MS.gene055461.t1 MTR_8g042410 62.500 104 39 0 12 115 37 140 7.50e-43 152
MS.gene055461.t1 MTR_7g109320 61.207 116 45 0 1 116 1 116 1.27e-42 147
MS.gene055461.t1 MTR_4g097570 59.091 110 44 1 1 109 1 110 1.55e-42 145
MS.gene055461.t1 MTR_6g055910 60.748 107 42 0 9 115 11 117 1.63e-42 145
MS.gene055461.t1 MTR_4g097570 58.559 111 44 2 1 109 1 111 1.47e-41 143
MS.gene055461.t1 MTR_4g128670 57.658 111 46 1 1 110 1 111 3.74e-41 144
MS.gene055461.t1 MTR_8g020490 55.932 118 48 1 1 118 1 114 4.01e-41 141
MS.gene055461.t1 MTR_1g086530 50.820 122 60 0 8 129 29 150 4.76e-41 141
MS.gene055461.t1 MTR_2g088170 63.208 106 39 0 10 115 27 132 8.57e-41 145
MS.gene055461.t1 MTR_5g079290 54.054 111 51 0 11 121 16 126 8.96e-41 140
MS.gene055461.t1 MTR_0197s0010 59.406 101 41 0 16 116 5 105 9.27e-41 139
MS.gene055461.t1 MTR_5g079220 56.075 107 47 0 11 117 20 126 2.07e-40 140
MS.gene055461.t1 MTR_5g078800 57.944 107 45 0 11 117 6 112 3.82e-40 139
MS.gene055461.t1 MTR_5g079120 51.304 115 56 0 8 122 57 171 4.89e-40 140
MS.gene055461.t1 MTR_5g078910 56.604 106 46 0 12 117 7 112 9.98e-40 139
MS.gene055461.t1 MTR_0247s0040 56.604 106 46 0 8 113 3 108 6.81e-39 133
MS.gene055461.t1 MTR_7g017260 55.963 109 46 1 11 117 24 132 1.13e-38 135
MS.gene055461.t1 MTR_3g045430 43.038 158 78 3 1 156 1 148 4.85e-38 134
MS.gene055461.t1 MTR_1g062940 42.949 156 81 3 12 161 6 159 6.92e-38 132
MS.gene055461.t1 MTR_0001s0360 54.206 107 49 0 11 117 6 112 7.23e-38 132
MS.gene055461.t1 MTR_0193s0090 54.630 108 49 0 10 117 5 112 8.33e-38 131
MS.gene055461.t1 MTR_5g078860 34.426 244 130 5 11 225 6 248 9.89e-38 134
MS.gene055461.t1 MTR_2g033170 55.556 117 52 0 6 122 18 134 1.45e-37 134
MS.gene055461.t1 MTR_5g078930 57.282 103 44 0 13 115 10 112 3.49e-37 130
MS.gene055461.t1 MTR_8g060940 54.902 102 46 0 11 112 6 107 8.92e-37 129
MS.gene055461.t1 MTR_4g063100 53.774 106 49 0 13 118 8 113 1.09e-36 129
MS.gene055461.t1 MTR_5g088080 48.855 131 63 3 13 142 13 140 1.66e-36 129
MS.gene055461.t1 MTR_5g088150 48.855 131 63 3 13 142 13 140 1.66e-36 129
MS.gene055461.t1 MTR_5g488210 48.855 131 63 3 13 142 13 140 1.66e-36 129
MS.gene055461.t1 MTR_5g088640 48.855 131 63 3 13 142 13 140 2.01e-36 129
MS.gene055461.t1 MTR_5g488170 48.855 131 63 3 13 142 13 140 2.05e-36 129
MS.gene055461.t1 MTR_2g096380 53.846 104 48 0 12 115 6 109 8.08e-36 127
MS.gene055461.t1 MTR_5g062790 49.618 131 62 3 13 142 10 137 1.06e-35 128
MS.gene055461.t1 MTR_5g078950 52.427 103 49 0 11 113 6 108 1.36e-35 127
MS.gene055461.t1 MTR_7g111290 66.304 92 31 0 43 134 1 92 2.51e-35 128
MS.gene055461.t1 MTR_4g123040 53.043 115 54 0 8 122 20 134 1.93e-34 125
MS.gene055461.t1 MTR_4g029540 53.846 104 47 1 12 114 10 113 4.00e-34 124
MS.gene055461.t1 MTR_8g006470 50.000 108 53 1 8 114 6 113 4.97e-34 124
MS.gene055461.t1 MTR_1g083630 48.760 121 61 1 1 121 1 120 3.24e-33 126
MS.gene055461.t1 MTR_5g088610 47.727 132 66 3 13 142 10 140 1.09e-31 119
MS.gene055461.t1 MTR_4g019370 50.877 114 49 3 14 126 38 145 6.21e-31 117
MS.gene055461.t1 MTR_5g007310 79.412 68 12 1 98 165 6 71 5.88e-30 111
MS.gene055461.t1 MTR_5g007310 51.948 77 29 2 150 226 161 229 9.60e-17 76.6
MS.gene055461.t1 MTR_4g128190 37.576 165 82 3 2 165 1 145 8.27e-30 111
MS.gene055461.t1 MTR_5g016510 50.909 110 51 2 14 122 5 112 9.43e-30 113
MS.gene055461.t1 MTR_4g094982 52.830 106 41 2 14 115 5 105 1.43e-29 111
MS.gene055461.t1 MTR_4g063100 61.842 76 29 0 43 118 9 84 2.49e-29 109
MS.gene055461.t1 MTR_6g015455 51.351 111 53 1 14 124 5 114 4.23e-29 115
MS.gene055461.t1 MTR_6g055910 61.538 78 30 0 38 115 11 88 6.85e-29 109
MS.gene055461.t1 MTR_3g101290 49.020 102 51 1 14 115 37 137 8.63e-28 105
MS.gene055461.t1 MTR_2g096380 61.644 73 28 0 43 115 18 90 1.16e-27 105
MS.gene055461.t1 MTR_7g061330 52.830 106 47 2 12 116 111 214 1.21e-27 110
MS.gene055461.t1 MTR_7g461410 52.830 106 47 2 12 116 111 214 1.21e-27 110
MS.gene055461.t1 MTR_7g061330 52.830 106 47 2 12 116 75 178 1.55e-27 110
MS.gene055461.t1 MTR_1g085880 49.600 125 60 3 2 124 1 124 4.61e-27 103
MS.gene055461.t1 MTR_3g110028 49.057 106 51 2 12 116 83 186 7.63e-27 108
MS.gene055461.t1 MTR_3g110028 35.000 100 63 2 14 112 33 131 9.44e-14 70.5
MS.gene055461.t1 MTR_5g049190 47.573 103 51 2 7 108 12 112 9.28e-27 103
MS.gene055461.t1 MTR_1g085770 51.304 115 54 2 2 114 1 115 2.42e-26 103
MS.gene055461.t1 MTR_1g026870 48.113 106 52 2 12 116 83 186 4.23e-26 106
MS.gene055461.t1 MTR_5g070020 44.762 105 55 2 12 115 120 222 8.24e-26 103
MS.gene055461.t1 MTR_1g057980 46.078 102 54 1 9 110 75 175 1.13e-25 102
MS.gene055461.t1 MTR_3g077650 47.573 103 51 2 14 115 181 281 1.26e-25 103
MS.gene055461.t1 MTR_4g105660 46.602 103 52 2 14 115 180 280 1.53e-25 103
MS.gene055461.t1 MTR_3g463400 45.714 105 54 2 12 115 131 233 1.56e-25 103
MS.gene055461.t1 MTR_7g037260 44.118 102 56 1 14 115 145 245 1.72e-25 102
MS.gene055461.t1 MTR_7g451170 43.137 102 57 1 14 115 191 291 1.66e-24 100
MS.gene055461.t1 MTR_6g074860 38.686 137 80 3 14 149 4 137 1.85e-24 97.4
MS.gene055461.t1 MTR_0023s0210 50.000 82 41 0 7 88 2 83 6.00e-24 91.7
MS.gene055461.t1 MTR_5g082910 48.598 107 51 3 8 112 12 116 6.60e-24 97.1
MS.gene055461.t1 MTR_4g088015 45.361 97 52 1 14 110 221 316 1.13e-23 98.6
MS.gene055461.t1 MTR_7g035350 42.647 136 67 5 17 149 228 355 3.78e-23 97.1
MS.gene055461.t1 MTR_4g082040 46.226 106 54 2 14 118 105 208 4.43e-23 96.7
MS.gene055461.t1 MTR_6g027360 47.059 102 51 2 10 110 74 173 4.26e-22 92.4
MS.gene055461.t1 MTR_5g041570 43.636 110 59 2 10 118 130 237 5.08e-22 94.0
MS.gene055461.t1 MTR_6g027340 45.918 98 50 2 14 110 16 111 8.66e-22 89.7
MS.gene055461.t1 MTR_7g450950 44.330 97 53 1 14 110 157 252 1.00e-21 92.0
MS.gene055461.t1 MTR_7g037130 41.237 97 56 1 14 110 145 240 1.91e-21 91.7
MS.gene055461.t1 MTR_5g010650 42.857 98 55 1 12 109 108 204 2.98e-21 92.0
MS.gene055461.t1 MTR_3g089045 42.478 113 62 2 4 115 6 116 1.37e-20 88.2
MS.gene055461.t1 MTR_6g027370 40.187 107 61 2 14 119 99 203 4.62e-19 84.7
MS.gene055461.t1 MTR_7g061550 37.624 101 61 1 17 115 10 110 4.90e-19 84.7
MS.gene055461.t1 MTR_7g086960 43.689 103 55 2 14 115 89 189 2.31e-18 82.8
MS.gene055461.t1 MTR_5g038910 39.394 99 59 1 17 115 29 126 1.49e-16 78.6
MS.gene055461.t1 MTR_5g038910 39.394 99 59 1 17 115 29 126 1.65e-16 77.8
MS.gene055461.t1 MTR_8g468380 34.513 113 69 2 7 115 11 122 2.44e-14 72.0
MS.gene055461.t1 MTR_6g055910 63.043 46 17 0 70 115 2 47 1.30e-13 67.8
MS.gene055461.t1 MTR_4g063100 60.870 46 18 0 73 118 4 49 2.63e-13 66.6
MS.gene055461.t1 MTR_2g096380 61.905 42 16 0 74 115 5 46 4.84e-12 62.8
MS.gene055461.t1 MTR_1g008970 36.190 105 47 2 12 116 108 192 7.76e-12 63.5
MS.gene055461.t1 MTR_8g017480 53.333 45 21 0 8 52 8 52 9.02e-12 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055461.t1 AT5G16770 72.327 159 43 1 1 159 1 158 8.87e-83 250
MS.gene055461.t1 AT5G16770 72.327 159 43 1 1 159 1 158 8.87e-83 250
MS.gene055461.t1 AT5G16770 72.327 159 43 1 1 159 1 158 1.76e-82 249
MS.gene055461.t1 AT5G16770 72.327 159 43 1 1 159 1 158 1.76e-82 249
MS.gene055461.t1 AT3G02940 78.519 135 29 0 1 135 1 135 9.43e-80 242
MS.gene055461.t1 AT3G02940 78.519 135 29 0 1 135 1 135 2.40e-79 241
MS.gene055461.t1 AT3G02940 78.519 135 29 0 1 135 1 135 2.40e-79 241
MS.gene055461.t1 AT5G10280 53.879 232 87 5 1 214 1 230 5.16e-79 241
MS.gene055461.t1 AT1G34670 76.923 143 30 1 1 143 1 140 3.32e-78 239
MS.gene055461.t1 AT5G65230 79.389 131 27 0 1 131 1 131 1.62e-76 233
MS.gene055461.t1 AT4G21440 68.707 147 46 0 1 147 1 147 7.90e-73 225
MS.gene055461.t1 AT3G61250 74.219 128 33 0 1 128 1 128 5.12e-70 216
MS.gene055461.t1 AT4G17785 65.772 149 50 1 1 148 1 149 3.01e-69 216
MS.gene055461.t1 AT4G17785 65.772 149 50 1 1 148 1 149 3.52e-69 216
MS.gene055461.t1 AT5G15310 69.466 131 40 0 1 131 1 131 2.70e-68 210
MS.gene055461.t1 AT5G15310 69.466 131 40 0 1 131 1 131 7.75e-68 211
MS.gene055461.t1 AT5G15310 69.466 131 40 0 1 131 1 131 8.21e-68 212
MS.gene055461.t1 AT3G01140 68.421 133 42 0 1 133 1 133 1.19e-67 212
MS.gene055461.t1 AT3G01140 67.669 133 43 0 1 133 44 176 1.70e-66 210
MS.gene055461.t1 AT4G05100 69.231 130 39 1 1 129 1 130 9.10e-66 206
MS.gene055461.t1 AT4G28110 68.992 129 40 0 1 129 1 129 1.14e-64 202
MS.gene055461.t1 AT5G54230 62.179 156 52 1 12 160 12 167 1.73e-64 203
MS.gene055461.t1 AT5G60890 65.625 128 44 0 1 128 1 128 3.40e-61 194
MS.gene055461.t1 AT1G57560 49.189 185 88 2 12 191 12 195 5.86e-61 192
MS.gene055461.t1 AT1G22640 51.497 167 81 0 1 167 1 167 9.43e-61 191
MS.gene055461.t1 AT4G22680 59.732 149 60 0 1 149 1 149 1.97e-60 191
MS.gene055461.t1 AT1G66230 65.625 128 44 0 1 128 1 128 4.79e-60 191
MS.gene055461.t1 AT1G57560 67.500 120 39 0 12 131 12 131 5.52e-60 191
MS.gene055461.t1 AT5G26660 59.864 147 58 1 12 157 12 158 1.01e-59 192
MS.gene055461.t1 AT1G18570 61.268 142 54 1 1 141 1 142 1.29e-59 191
MS.gene055461.t1 AT5G16600 65.152 132 46 0 1 132 1 132 2.51e-59 190
MS.gene055461.t1 AT5G61420 64.844 128 45 0 1 128 1 128 2.51e-59 191
MS.gene055461.t1 AT4G12350 65.625 128 44 0 1 128 1 128 6.63e-59 187
MS.gene055461.t1 AT5G07690 64.844 128 45 0 1 128 1 128 2.40e-58 188
MS.gene055461.t1 AT4G34990 63.281 128 47 0 1 128 1 128 4.18e-58 185
MS.gene055461.t1 AT4G09460 63.780 127 46 0 1 127 1 127 6.01e-58 184
MS.gene055461.t1 AT1G09540 68.333 120 38 0 12 131 12 131 7.51e-58 187
MS.gene055461.t1 AT1G74080 62.595 131 49 0 1 131 1 131 1.51e-57 186
MS.gene055461.t1 AT4G38620 62.500 128 48 0 1 128 1 128 1.93e-57 184
MS.gene055461.t1 AT3G23250 44.130 247 99 8 1 228 1 227 2.69e-57 184
MS.gene055461.t1 AT5G07700 63.281 128 47 0 1 128 1 128 3.87e-57 185
MS.gene055461.t1 AT5G07700 63.281 128 47 0 1 128 1 128 3.87e-57 185
MS.gene055461.t1 AT2G16720 62.205 127 48 0 1 127 1 127 5.72e-57 182
MS.gene055461.t1 AT1G35515 61.905 126 48 0 1 126 1 126 7.94e-57 180
MS.gene055461.t1 AT3G12720 68.696 115 36 0 12 126 22 136 2.41e-56 182
MS.gene055461.t1 AT3G13540 62.400 125 47 0 4 128 15 139 2.91e-56 180
MS.gene055461.t1 AT2G31180 52.071 169 66 2 1 158 1 165 6.63e-56 179
MS.gene055461.t1 AT4G01680 67.500 120 39 0 12 131 12 131 7.41e-56 178
MS.gene055461.t1 AT1G06180 69.828 116 35 0 1 116 1 116 3.02e-55 177
MS.gene055461.t1 AT4G01680 67.500 120 39 0 12 131 12 131 5.25e-55 179
MS.gene055461.t1 AT5G62320 60.606 132 45 1 3 127 4 135 7.53e-55 176
MS.gene055461.t1 AT5G56110 60.156 128 51 0 1 128 1 128 1.81e-54 177
MS.gene055461.t1 AT1G08810 48.148 189 88 2 1 189 1 179 1.91e-54 176
MS.gene055461.t1 AT3G28910 63.115 122 45 0 1 122 1 122 5.75e-54 176
MS.gene055461.t1 AT5G14340 61.069 131 51 0 1 131 13 143 7.86e-54 174
MS.gene055461.t1 AT1G56160 68.421 114 36 0 3 116 5 118 9.74e-54 175
MS.gene055461.t1 AT3G47600 63.866 119 43 0 1 119 1 119 2.54e-53 175
MS.gene055461.t1 AT1G74430 60.769 130 51 0 1 130 1 130 1.23e-52 171
MS.gene055461.t1 AT5G62470 62.185 119 45 0 1 119 1 119 5.01e-52 172
MS.gene055461.t1 AT4G01680 61.364 132 39 1 12 131 12 143 1.31e-51 171
MS.gene055461.t1 AT1G18710 58.519 135 56 0 1 135 1 135 2.90e-51 167
MS.gene055461.t1 AT1G79180 65.517 116 40 0 3 118 5 120 3.58e-51 168
MS.gene055461.t1 AT1G74650 63.025 119 44 0 1 119 1 119 4.18e-51 169
MS.gene055461.t1 AT5G49330 62.931 116 43 0 1 116 1 116 1.42e-50 168
MS.gene055461.t1 AT5G62470 62.185 119 44 1 1 119 1 118 2.24e-50 167
MS.gene055461.t1 AT3G13890 60.156 128 51 0 12 139 12 139 2.73e-50 167
MS.gene055461.t1 AT1G63910 56.296 135 59 0 8 142 8 142 1.28e-49 166
MS.gene055461.t1 AT1G16490 64.912 114 40 0 3 116 5 118 1.73e-49 163
MS.gene055461.t1 AT3G62610 62.931 116 43 0 1 116 1 116 2.43e-49 165
MS.gene055461.t1 AT2G47460 62.931 116 43 0 1 116 1 116 3.25e-49 165
MS.gene055461.t1 AT3G12820 63.793 116 42 0 3 118 5 120 4.26e-49 161
MS.gene055461.t1 AT3G28470 56.115 139 61 0 1 139 1 139 2.22e-47 159
MS.gene055461.t1 AT3G13890 56.204 137 51 1 12 139 12 148 2.94e-47 160
MS.gene055461.t1 AT2G36890 58.268 127 52 1 1 126 1 127 3.31e-47 158
MS.gene055461.t1 AT5G40330 58.621 116 48 0 1 116 1 116 6.56e-47 155
MS.gene055461.t1 AT2G36890 58.268 127 52 1 1 126 42 168 6.98e-47 158
MS.gene055461.t1 AT5G65790 61.017 118 45 1 1 117 1 118 1.13e-46 159
MS.gene055461.t1 AT5G23000 58.475 118 48 1 1 117 1 118 2.70e-46 156
MS.gene055461.t1 AT5G14750 58.261 115 46 1 4 116 6 120 5.23e-46 152
MS.gene055461.t1 AT5G57620 60.169 118 46 1 1 117 1 118 1.06e-45 155
MS.gene055461.t1 AT3G49690 60.169 118 46 1 1 117 1 118 1.33e-45 154
MS.gene055461.t1 AT5G12870 62.963 108 40 0 12 119 18 125 2.02e-45 153
MS.gene055461.t1 AT5G06100 61.111 108 42 0 8 115 28 135 4.24e-45 156
MS.gene055461.t1 AT4G37780 56.780 118 50 1 1 117 1 118 5.78e-45 152
MS.gene055461.t1 AT3G11440 61.321 106 41 0 10 115 39 144 6.81e-45 156
MS.gene055461.t1 AT1G79180 50.336 149 41 1 3 118 5 153 9.96e-45 152
MS.gene055461.t1 AT3G24310 59.813 107 43 0 9 115 15 121 1.15e-44 150
MS.gene055461.t1 AT5G06100 61.111 108 42 0 8 115 28 135 1.75e-44 156
MS.gene055461.t1 AT5G06100 61.111 108 42 0 8 115 28 135 1.75e-44 156
MS.gene055461.t1 AT5G06100 61.111 108 42 0 8 115 28 135 1.75e-44 156
MS.gene055461.t1 AT5G06100 61.111 108 42 0 8 115 28 135 1.75e-44 156
MS.gene055461.t1 AT3G01530 58.716 109 45 0 8 116 21 129 2.12e-44 148
MS.gene055461.t1 AT3G27810 59.091 110 45 0 9 118 17 126 2.68e-44 148
MS.gene055461.t1 AT3G11440 61.321 106 41 0 10 115 39 144 2.76e-44 156
MS.gene055461.t1 AT3G11440 61.321 106 41 0 10 115 39 144 2.76e-44 156
MS.gene055461.t1 AT3G11440 61.321 106 41 0 10 115 39 144 2.76e-44 156
MS.gene055461.t1 AT3G08500 61.261 111 43 0 6 116 24 134 4.67e-44 151
MS.gene055461.t1 AT5G40350 57.143 112 48 0 9 120 14 125 6.32e-44 147
MS.gene055461.t1 AT2G32460 54.400 125 56 1 11 135 5 128 6.92e-44 154
MS.gene055461.t1 AT2G32460 54.400 125 56 1 11 135 17 140 6.94e-44 154
MS.gene055461.t1 AT5G35550 61.062 113 44 0 4 116 6 118 9.27e-44 148
MS.gene055461.t1 AT3G30210 60.577 104 41 0 11 114 26 129 1.11e-43 148
MS.gene055461.t1 AT3G27920 54.622 119 51 1 2 117 1 119 2.20e-43 146
MS.gene055461.t1 AT4G13480 59.223 103 42 0 13 115 7 109 2.12e-42 144
MS.gene055461.t1 AT5G55020 60.000 110 43 1 12 121 26 134 2.25e-42 150
MS.gene055461.t1 AT5G52600 57.944 107 45 0 9 115 9 115 3.53e-42 142
MS.gene055461.t1 AT5G26660 59.649 114 45 1 45 157 14 127 5.62e-42 145
MS.gene055461.t1 AT1G48000 48.951 143 71 1 12 152 32 174 6.13e-42 143
MS.gene055461.t1 AT2G26960 55.833 120 48 2 6 121 10 128 6.79e-42 147
MS.gene055461.t1 AT2G47190 38.095 210 123 4 4 210 11 216 1.04e-41 143
MS.gene055461.t1 AT4G26930 61.165 103 40 0 12 114 19 121 2.13e-41 145
MS.gene055461.t1 AT3G48920 58.824 102 42 0 13 114 19 120 1.32e-40 140
MS.gene055461.t1 AT1G25340 51.304 115 56 0 13 127 19 133 9.60e-40 138
MS.gene055461.t1 AT1G68320 54.054 111 51 0 12 122 19 129 1.16e-39 138
MS.gene055461.t1 AT5G52260 61.321 106 41 0 13 118 13 118 1.37e-39 137
MS.gene055461.t1 AT1G66370 57.143 105 45 0 11 115 7 111 3.59e-39 136
MS.gene055461.t1 AT4G25560 59.434 106 43 0 13 118 11 116 5.08e-39 136
MS.gene055461.t1 AT3G46130 52.727 110 52 0 9 118 6 115 3.85e-38 133
MS.gene055461.t1 AT5G59780 52.830 106 50 0 13 118 9 114 2.51e-37 130
MS.gene055461.t1 AT3G06490 56.522 115 50 0 8 122 15 129 3.43e-37 132
MS.gene055461.t1 AT1G66380 60.000 105 42 0 11 115 7 111 4.36e-37 127
MS.gene055461.t1 AT3G53200 56.075 107 47 0 9 115 6 112 1.19e-36 129
MS.gene055461.t1 AT5G49620 52.101 119 57 0 4 122 18 136 1.15e-35 128
MS.gene055461.t1 AT1G56650 59.048 105 43 0 11 115 7 111 1.37e-35 127
MS.gene055461.t1 AT1G25340 48.696 115 54 1 13 127 19 128 3.59e-35 126
MS.gene055461.t1 AT3G60460 50.000 114 56 1 2 114 1 114 5.56e-35 126
MS.gene055461.t1 AT1G25340 48.696 115 54 1 13 127 19 128 6.60e-35 126
MS.gene055461.t1 AT1G66390 58.095 105 44 0 11 115 7 111 7.51e-35 125
MS.gene055461.t1 AT2G26950 39.062 192 103 5 1 178 1 192 1.94e-34 127
MS.gene055461.t1 AT3G47600 68.000 75 24 0 45 119 39 113 1.76e-32 120
MS.gene055461.t1 AT5G49620 46.617 133 57 1 4 122 18 150 6.68e-32 119
MS.gene055461.t1 AT5G14750 62.821 78 26 1 39 116 12 86 3.19e-31 113
MS.gene055461.t1 AT1G18960 47.541 122 55 3 10 128 6 121 4.43e-31 116
MS.gene055461.t1 AT3G12820 69.014 71 22 0 48 118 2 72 5.01e-31 113
MS.gene055461.t1 AT5G35550 65.385 78 27 0 39 116 44 121 6.20e-31 115
MS.gene055461.t1 AT1G22640 47.706 109 57 0 59 167 2 110 8.46e-31 113
MS.gene055461.t1 AT3G27810 63.514 74 27 0 45 118 4 77 1.39e-29 109
MS.gene055461.t1 AT5G40350 61.842 76 29 0 45 120 5 80 2.63e-29 108
MS.gene055461.t1 AT5G40360 37.500 160 86 4 1 160 145 290 9.21e-29 111
MS.gene055461.t1 AT4G37260 53.922 102 46 1 14 115 13 113 1.41e-28 110
MS.gene055461.t1 AT2G23290 53.922 102 46 1 14 115 13 113 1.84e-28 109
MS.gene055461.t1 AT5G02320 52.830 106 47 2 12 116 65 168 2.14e-28 112
MS.gene055461.t1 AT5G02320 52.830 106 47 2 12 116 125 228 2.30e-28 112
MS.gene055461.t1 AT5G02320 52.830 106 47 2 12 116 125 228 2.30e-28 112
MS.gene055461.t1 AT3G46130 60.000 75 30 0 44 118 9 83 2.88e-28 107
MS.gene055461.t1 AT3G55730 50.909 110 45 2 14 119 56 160 3.16e-28 110
MS.gene055461.t1 AT5G59780 60.811 74 29 0 45 118 20 93 5.46e-28 106
MS.gene055461.t1 AT3G46130 60.811 74 29 0 45 118 20 93 6.48e-28 106
MS.gene055461.t1 AT2G39880 50.943 106 43 2 14 115 50 150 8.37e-28 108
MS.gene055461.t1 AT3G53200 64.789 71 25 0 45 115 9 79 1.02e-27 105
MS.gene055461.t1 AT1G71030 51.111 90 43 1 38 127 7 95 2.00e-27 104
MS.gene055461.t1 AT4G18770 44.444 108 59 1 9 116 212 318 3.24e-27 108
MS.gene055461.t1 AT1G71030 54.545 77 35 0 51 127 5 81 3.63e-27 103
MS.gene055461.t1 AT3G09370 48.739 119 54 3 12 125 133 249 6.95e-27 108
MS.gene055461.t1 AT3G27785 44.860 107 58 1 9 115 184 289 7.22e-27 107
MS.gene055461.t1 AT3G09370 48.739 119 54 3 12 125 128 244 8.32e-27 107
MS.gene055461.t1 AT3G09370 48.739 119 54 3 12 125 141 257 9.08e-27 107
MS.gene055461.t1 AT3G09230 47.222 108 48 2 14 117 55 157 9.58e-27 106
MS.gene055461.t1 AT3G50060 50.000 102 50 1 14 115 6 106 4.23e-26 103
MS.gene055461.t1 AT4G32730 48.113 106 52 2 12 116 85 188 4.75e-26 106
MS.gene055461.t1 AT4G32730 35.000 100 63 2 14 112 35 133 1.67e-14 72.8
MS.gene055461.t1 AT4G32730 48.113 106 52 2 12 116 85 188 4.79e-26 106
MS.gene055461.t1 AT4G32730 35.000 100 63 2 14 112 35 133 2.01e-14 72.4
MS.gene055461.t1 AT4G32730 48.113 106 52 2 12 116 85 188 4.79e-26 106
MS.gene055461.t1 AT4G32730 35.000 100 63 2 14 112 35 133 2.01e-14 72.4
MS.gene055461.t1 AT4G32730 48.113 106 52 2 12 116 85 188 4.79e-26 106
MS.gene055461.t1 AT4G32730 35.000 100 63 2 14 112 35 133 2.01e-14 72.4
MS.gene055461.t1 AT4G32730 48.113 106 52 2 12 116 85 188 4.79e-26 106
MS.gene055461.t1 AT4G32730 35.000 100 63 2 14 112 35 133 2.01e-14 72.4
MS.gene055461.t1 AT5G11510 45.133 113 58 2 12 121 79 190 1.06e-25 105
MS.gene055461.t1 AT5G11510 45.133 113 58 2 12 121 79 190 1.06e-25 105
MS.gene055461.t1 AT5G11510 45.133 113 58 2 12 121 79 190 1.06e-25 105
MS.gene055461.t1 AT3G23250 37.037 189 80 8 59 228 2 170 1.12e-25 100
MS.gene055461.t1 AT5G11510 45.133 113 58 2 12 121 79 190 1.20e-25 105
MS.gene055461.t1 AT5G11510 31.000 100 67 2 14 112 29 127 8.89e-11 61.6
MS.gene055461.t1 AT5G11510 45.133 113 58 2 12 121 79 190 1.30e-25 105
MS.gene055461.t1 AT5G11510 31.000 100 67 2 14 112 29 127 8.50e-11 61.6
MS.gene055461.t1 AT5G58850 46.667 105 53 2 12 115 103 205 1.48e-25 103
MS.gene055461.t1 AT5G67300 51.456 103 47 2 14 115 6 106 1.55e-25 101
MS.gene055461.t1 AT1G66380 64.384 73 26 0 43 115 6 78 2.74e-25 95.9
MS.gene055461.t1 AT5G11050 45.631 103 53 2 14 115 105 205 3.94e-25 102
MS.gene055461.t1 AT1G66380 48.980 98 49 1 11 107 7 104 4.88e-23 90.1
MS.gene055461.t1 AT1G17950 41.880 117 61 3 14 129 5 115 6.56e-23 93.6
MS.gene055461.t1 AT1G69560 42.342 111 61 2 9 118 102 210 8.23e-23 95.1
MS.gene055461.t1 AT1G69560 43.119 109 59 2 9 116 118 224 8.90e-23 95.1
MS.gene055461.t1 AT5G14750 62.069 58 22 0 59 116 2 59 2.38e-22 89.4
MS.gene055461.t1 AT5G14750 62.069 58 22 0 59 116 2 59 2.38e-22 89.4
MS.gene055461.t1 AT1G26780 44.444 108 57 2 12 118 96 201 6.06e-22 91.7
MS.gene055461.t1 AT3G29020 39.200 125 69 2 14 132 65 188 6.79e-22 90.5
MS.gene055461.t1 AT1G26780 45.714 105 54 2 12 115 96 198 1.16e-21 92.0
MS.gene055461.t1 AT3G29020 39.200 125 69 2 14 132 67 190 4.01e-21 90.1
MS.gene055461.t1 AT1G73410 42.735 117 58 3 14 129 6 114 7.66e-21 88.2
MS.gene055461.t1 AT4G33450 39.091 110 64 2 7 115 12 119 1.30e-20 87.4
MS.gene055461.t1 AT1G73410 44.340 106 56 2 14 118 6 109 1.31e-20 86.7
MS.gene055461.t1 AT2G25230 39.496 119 67 3 9 124 21 137 3.37e-20 86.3
MS.gene055461.t1 AT5G61420 72.917 48 13 0 81 128 2 49 5.31e-20 86.7
MS.gene055461.t1 AT4G00540 42.478 113 59 3 11 119 100 210 1.13e-19 87.0
MS.gene055461.t1 AT4G00540 42.857 112 58 3 12 119 99 208 1.59e-19 87.0
MS.gene055461.t1 AT5G17800 40.000 105 62 1 14 118 93 196 2.10e-19 85.5
MS.gene055461.t1 AT5G15310 72.727 44 12 0 88 131 9 52 2.91e-18 81.3
MS.gene055461.t1 AT2G37630 38.614 101 60 1 17 115 7 107 3.94e-18 82.4
MS.gene055461.t1 AT1G14350 41.414 99 57 1 17 115 28 125 5.36e-17 79.7
MS.gene055461.t1 AT1G14350 41.414 99 57 1 17 115 28 125 5.36e-17 79.7
MS.gene055461.t1 AT2G02820 40.404 99 58 1 17 115 33 130 5.74e-17 79.0
MS.gene055461.t1 AT2G02820 40.404 99 58 1 17 115 33 130 1.05e-16 79.0
MS.gene055461.t1 AT2G02820 40.404 99 58 1 17 115 33 130 1.21e-16 78.6
MS.gene055461.t1 AT5G40430 35.644 101 63 1 10 110 50 148 3.77e-16 75.5
MS.gene055461.t1 AT4G28110 69.048 42 13 0 88 129 4 45 7.35e-16 73.6
MS.gene055461.t1 AT1G74650 69.767 43 13 0 77 119 1 43 9.00e-15 71.6
MS.gene055461.t1 AT4G25560 64.583 48 17 0 71 118 3 50 1.63e-14 70.5
MS.gene055461.t1 AT3G28910 63.043 46 17 0 77 122 1 46 3.15e-14 70.1
MS.gene055461.t1 AT1G22640 38.750 80 49 0 88 167 16 95 6.83e-14 68.2
MS.gene055461.t1 AT5G14340 61.364 44 17 0 88 131 10 53 2.76e-13 66.6
MS.gene055461.t1 AT5G59780 56.522 46 20 0 73 118 4 49 4.87e-13 65.5
MS.gene055461.t1 AT3G46130 56.522 46 20 0 73 118 4 49 5.60e-13 65.9
MS.gene055461.t1 AT5G39700 36.458 96 60 1 15 110 57 151 9.94e-13 65.1
MS.gene055461.t1 AT1G74430 51.852 54 26 0 77 130 8 61 2.34e-12 64.3
MS.gene055461.t1 AT1G08810 36.275 102 55 2 88 189 5 96 3.15e-11 60.8
MS.gene055461.t1 AT1G08810 36.275 102 55 2 88 189 5 96 3.15e-11 60.8

Find 39 sgRNAs with CRISPR-Local

Find 95 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCAATTTACATTCAGTTCT+TGG 0.192562 5.3:-2134676 MS.gene055461:CDS
ATGATGCAAATGATGCTTAT+TGG 0.261081 5.3:-2133270 MS.gene055461:CDS
CTTCCAACAGCTTTGAAACT+TGG 0.298815 5.3:-2133309 MS.gene055461:CDS
CTGTTCAATCCTGCAAGCTT+TGG 0.320153 5.3:+2134790 None:intergenic
TAAGATGGAATAATTATCTA+AGG 0.371636 5.3:-2134747 MS.gene055461:CDS
GTTCTTGGCCTGTGTGTCAC+TGG 0.373245 5.3:+2133766 None:intergenic
AGAGCTCTTCCAAAGCTTGC+AGG 0.374930 5.3:-2134799 MS.gene055461:CDS
ACATAAATAATAATGCTCTA+AGG 0.382840 5.3:-2133672 MS.gene055461:CDS
TCAGTTTCACCTCAACGTTC+AGG 0.388670 5.3:-2133394 MS.gene055461:CDS
GCTATAGCAACTCATCTTCC+AGG 0.393434 5.3:-2133862 MS.gene055461:CDS
ATTATTATTTATGTCACAAC+TGG 0.413574 5.3:+2133681 None:intergenic
TTTGTTGTAGATTACTAAGA+AGG 0.414081 5.3:+2133731 None:intergenic
ATTTCATTATCAGTCCTTCC+TGG 0.418769 5.3:+2133844 None:intergenic
TTCCAACAGCTTTGAAACTT+GGG 0.419224 5.3:-2133308 MS.gene055461:CDS
AAGCCACTTTCATCATTGCT+TGG 0.426214 5.3:+2134898 None:intergenic
AGAAGAAGATAAAATATTAG+TGG 0.429587 5.3:-2134854 MS.gene055461:CDS
CATCATTTACCAAACTTTGT+GGG 0.431365 5.3:+2133631 None:intergenic
AGGTCTAGGTGATCTGTTCT+TGG 0.441362 5.3:+2133751 None:intergenic
TTATCTTCTTCTGGACTCCA+TGG 0.442300 5.3:+2134865 None:intergenic
TCCCCAAGTTTCAAAGCTGT+TGG 0.451141 5.3:+2133306 None:intergenic
AGAAACATGGTCATGGAAGT+TGG 0.468034 5.3:-2134822 MS.gene055461:CDS
ATGAGAATATTGGCTATGGC+TGG 0.477414 5.3:+2132157 None:intergenic
GAAAGAGTTGTAGACTAAGA+TGG 0.479581 5.3:-2134762 MS.gene055461:CDS
TCAACGTTCAGGAACAGTTA+AGG 0.503558 5.3:-2133383 MS.gene055461:CDS
GTAGATTACTAAGAAGGTCT+AGG 0.504439 5.3:+2133737 None:intergenic
TGATGAAAGTGGCTTGAAGA+AGG 0.511342 5.3:-2134890 MS.gene055461:CDS
TCCAACAGCTTTGAAACTTG+GGG 0.538039 5.3:-2133307 MS.gene055461:CDS
ATCATTTACCAAACTTTGTG+GGG 0.563161 5.3:+2133632 None:intergenic
GATGAAAGTGGCTTGAAGAA+GGG 0.567181 5.3:-2134889 MS.gene055461:CDS
GTGGCTTGAAGAAGGGTCCA+TGG 0.567632 5.3:-2134882 MS.gene055461:CDS
ACACCAAGCAATGATGAAAG+TGG 0.569545 5.3:-2134901 MS.gene055461:CDS
CTAAGGCCTGATATTAGAAG+AGG 0.576748 5.3:-2134730 MS.gene055461:CDS
CACATTCAGAAACATGGTCA+TGG 0.577172 5.3:-2134829 MS.gene055461:CDS
CTTGCAGGATTGAACAGATG+TGG 0.598027 5.3:-2134784 MS.gene055461:CDS
CGTTCAGGAACAGTTAAGGT+AGG 0.636839 5.3:-2133379 MS.gene055461:CDS
GGTTAGATCCAGTGACACAC+AGG 0.640850 5.3:-2133774 MS.gene055461:CDS
TAGCAACTCATCTTCCAGGA+AGG 0.644421 5.3:-2133858 MS.gene055461:CDS
TTAACTGTTCCTGAACGTTG+AGG 0.645603 5.3:+2133385 None:intergenic
GTGGATCACATTCAGAAACA+TGG 0.652058 5.3:-2134835 MS.gene055461:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATATATATAT+GGG + chr5.3:2134388-2134369 None:intergenic 0.0%
!! TATATATATATATATATATA+TGG + chr5.3:2134389-2134370 None:intergenic 0.0%
!!! AAAAAAAATAGTTTTAATTG+TGG + chr5.3:2132643-2132662 None:intergenic 10.0%
!!! ATAATGAAATAAAGAATTTT+TGG - chr5.3:2133249-2133268 MS.gene055461:intron 10.0%
!!! CTAAATTATTTTTTTTTTTG+AGG + chr5.3:2132529-2132548 None:intergenic 10.0%
!! AAATATTCAGCTATAAATAA+GGG - chr5.3:2132665-2132684 MS.gene055461:intron 15.0%
!! TAAATATTCAGCTATAAATA+AGG - chr5.3:2132664-2132683 MS.gene055461:intron 15.0%
!! TTATAATATGCAATAACAAA+TGG - chr5.3:2132991-2133010 MS.gene055461:intron 15.0%
!! TTCATATTTCTTTAATAATC+CGG + chr5.3:2132795-2132814 None:intergenic 15.0%
!! TTCTAAACTAATATATAAAG+TGG - chr5.3:2134005-2134024 MS.gene055461:intron 15.0%
!! AAAAGACACTAAAATATGAT+TGG - chr5.3:2134753-2134772 MS.gene055461:CDS 20.0%
!! AAATTAAGTGTAACAAAAAG+CGG - chr5.3:2134192-2134211 MS.gene055461:intron 20.0%
!! ACATAAATAATAATGCTCTA+AGG - chr5.3:2133408-2133427 MS.gene055461:intron 20.0%
!! AGAAGAAGATAAAATATTAG+TGG - chr5.3:2132226-2132245 MS.gene055461:intron 20.0%
!! ATTATTATTTATGTCACAAC+TGG + chr5.3:2133402-2133421 None:intergenic 20.0%
!! CATATAAAGAGTTTAATTAC+TGG + chr5.3:2134668-2134687 None:intergenic 20.0%
!! TAAGATGGAATAATTATCTA+AGG - chr5.3:2132333-2132352 MS.gene055461:intron 20.0%
!!! AACATACAAAGTTTTTATGA+TGG - chr5.3:2133489-2133508 MS.gene055461:intron 20.0%
!!! ACTAATATTTTATCTTCTTC+TGG + chr5.3:2132227-2132246 None:intergenic 20.0%
!!! ATCATTATTTCTTTGATTCA+TGG - chr5.3:2132442-2132461 MS.gene055461:intron 20.0%
!!! ATGAATATGGTTGATTTATT+AGG - chr5.3:2133189-2133208 MS.gene055461:intron 20.0%
!!! TTTTTTGTCAAATAATCAAG+TGG + chr5.3:2133093-2133112 None:intergenic 20.0%
! AAGAAAAAGCTAATGCAAAT+GGG - chr5.3:2133284-2133303 MS.gene055461:CDS 25.0%
! ATCAATTTACATTCAGTTCT+TGG - chr5.3:2132404-2132423 MS.gene055461:intron 25.0%
! TTGAGAAGAAATACCAATAT+TGG + chr5.3:2133517-2133536 None:intergenic 25.0%
!! AAGTTTGGTAAATGATGTTT+TGG - chr5.3:2133455-2133474 MS.gene055461:intron 25.0%
!! AATATGGTTGATTTATTAGG+TGG - chr5.3:2133192-2133211 MS.gene055461:intron 25.0%
!! AATTTTCCTCTTCTAATATC+AGG + chr5.3:2132359-2132378 None:intergenic 25.0%
!! ACGAGAATTTTATGAAAAAG+AGG - chr5.3:2133970-2133989 MS.gene055461:intron 25.0%
!! AGTTTGGTAAATGATGTTTT+GGG - chr5.3:2133456-2133475 MS.gene055461:intron 25.0%
!! ATATGGTTGATTTATTAGGT+GGG - chr5.3:2133193-2133212 MS.gene055461:intron 25.0%
!! CGAGAATTTTATGAAAAAGA+GGG - chr5.3:2133971-2133990 MS.gene055461:intron 25.0%
!! TACTTTTGAATGTTCTTATC+CGG - chr5.3:2132773-2132792 MS.gene055461:intron 25.0%
!! TTTGTTGTAGATTACTAAGA+AGG + chr5.3:2133352-2133371 None:intergenic 25.0%
!! TTTTATGATGGTTCCAATAT+TGG - chr5.3:2133501-2133520 MS.gene055461:intron 25.0%
!!! TACACCACTAGTTTTTATTA+AGG + chr5.3:2134335-2134354 None:intergenic 25.0%
AAAACCATGTTAGAAACAAG+TGG + chr5.3:2133879-2133898 None:intergenic 30.0%
ACATCATTTACCAAACTTTG+TGG + chr5.3:2133453-2133472 None:intergenic 30.0%
AGAAAAAGCTAATGCAAATG+GGG - chr5.3:2133285-2133304 MS.gene055461:CDS 30.0%
ATCATTTACCAAACTTTGTG+GGG + chr5.3:2133451-2133470 None:intergenic 30.0%
ATGATGCAAATGATGCTTAT+TGG - chr5.3:2133810-2133829 MS.gene055461:CDS 30.0%
CACACCTTAATAAAAACTAG+TGG - chr5.3:2134328-2134347 MS.gene055461:intron 30.0%
CATCATTTACCAAACTTTGT+GGG + chr5.3:2133452-2133471 None:intergenic 30.0%
CGTGATTGTGAATATGAATA+TGG - chr5.3:2133176-2133195 MS.gene055461:intron 30.0%
GAAGAAAAAGCTAATGCAAA+TGG - chr5.3:2133283-2133302 MS.gene055461:CDS 30.0%
! ATATATATATGGGGTTTGCT+AGG + chr5.3:2134359-2134378 None:intergenic 30.0%
! CAGAAATTTGGTGAACAAAT+TGG - chr5.3:2133609-2133628 MS.gene055461:intron 30.0%
! GCTTCAAAGTTTTGCAAATT+AGG + chr5.3:2133549-2133568 None:intergenic 30.0%
!! ACATTTTAAGTGTGAAGAAG+TGG + chr5.3:2133060-2133079 None:intergenic 30.0%
ATTTCATTATCAGTCCTTCC+TGG + chr5.3:2133239-2133258 None:intergenic 35.0%
GAAAGAGTTGTAGACTAAGA+TGG - chr5.3:2132318-2132337 MS.gene055461:intron 35.0%
GTAGATTACTAAGAAGGTCT+AGG + chr5.3:2133346-2133365 None:intergenic 35.0%
TCAAAATTCACTTCCAAAGC+TGG - chr5.3:2133660-2133679 MS.gene055461:CDS 35.0%
TTTGAGTGCTCTCAGAAATT+TGG - chr5.3:2133597-2133616 MS.gene055461:intron 35.0%
!! AACTCCACTTGTTTCTAACA+TGG - chr5.3:2133872-2133891 MS.gene055461:CDS 35.0%
!! TTCCAACAGCTTTGAAACTT+GGG - chr5.3:2133772-2133791 MS.gene055461:CDS 35.0%
ACACCAAGCAATGATGAAAG+TGG - chr5.3:2132179-2132198 MS.gene055461:intron 40.0%
AGAAACATGGTCATGGAAGT+TGG - chr5.3:2132258-2132277 MS.gene055461:intron 40.0%
CACATTCAGAAACATGGTCA+TGG - chr5.3:2132251-2132270 MS.gene055461:intron 40.0%
CTAAAACTATGTTCGAACGC+AGG - chr5.3:2133017-2133036 MS.gene055461:intron 40.0%
CTAAGGCCTGATATTAGAAG+AGG - chr5.3:2132350-2132369 MS.gene055461:intron 40.0%
GATGAAAGTGGCTTGAAGAA+GGG - chr5.3:2132191-2132210 MS.gene055461:intron 40.0%
GTGAAACTGAAAACCAGCTT+TGG + chr5.3:2133676-2133695 None:intergenic 40.0%
GTGGATCACATTCAGAAACA+TGG - chr5.3:2132245-2132264 MS.gene055461:intron 40.0%
GTGGTAGTAATTGCTGAAGA+GGG + chr5.3:2133572-2133591 None:intergenic 40.0%
TCAACGTTCAGGAACAGTTA+AGG - chr5.3:2133697-2133716 MS.gene055461:CDS 40.0%
TGATGAAAGTGGCTTGAAGA+AGG - chr5.3:2132190-2132209 MS.gene055461:intron 40.0%
TGGTAGTAATTGCTGAAGAG+GGG + chr5.3:2133571-2133590 None:intergenic 40.0%
TGTAACAAAAAGCGGAGAGA+CGG - chr5.3:2134200-2134219 MS.gene055461:intron 40.0%
TGTGGTAGTAATTGCTGAAG+AGG + chr5.3:2133573-2133592 None:intergenic 40.0%
TTAACTGTTCCTGAACGTTG+AGG + chr5.3:2133698-2133717 None:intergenic 40.0%
TTATCTTCTTCTGGACTCCA+TGG + chr5.3:2132218-2132237 None:intergenic 40.0%
! AAGCCACTTTCATCATTGCT+TGG + chr5.3:2132185-2132204 None:intergenic 40.0%
! CTGCGTTCGAACATAGTTTT+AGG + chr5.3:2133019-2133038 None:intergenic 40.0%
!! CTTCCAACAGCTTTGAAACT+TGG - chr5.3:2133771-2133790 MS.gene055461:CDS 40.0%
!! TCCAACAGCTTTGAAACTTG+GGG - chr5.3:2133773-2133792 MS.gene055461:CDS 40.0%
!! TGAGAGCACTCAAATTCTTG+TGG + chr5.3:2133591-2133610 None:intergenic 40.0%
AGGTCTAGGTGATCTGTTCT+TGG + chr5.3:2133332-2133351 None:intergenic 45.0%
CGTTCAGGAACAGTTAAGGT+AGG - chr5.3:2133701-2133720 MS.gene055461:CDS 45.0%
CTGTTCAATCCTGCAAGCTT+TGG + chr5.3:2132293-2132312 None:intergenic 45.0%
CTTGCAGGATTGAACAGATG+TGG - chr5.3:2132296-2132315 MS.gene055461:intron 45.0%
GCTATAGCAACTCATCTTCC+AGG - chr5.3:2133218-2133237 MS.gene055461:intron 45.0%
TAGCAACTCATCTTCCAGGA+AGG - chr5.3:2133222-2133241 MS.gene055461:intron 45.0%
TCACTTCTCCCCACAAAGTT+TGG - chr5.3:2133440-2133459 MS.gene055461:intron 45.0%
TCAGTTTCACCTCAACGTTC+AGG - chr5.3:2133686-2133705 MS.gene055461:CDS 45.0%
TCCCCAAGTTTCAAAGCTGT+TGG + chr5.3:2133777-2133796 None:intergenic 45.0%
!! CAAAAAATAAATAAATTAAT+AGG - chr5.3:2133106-2133125 MS.gene055461:intron 5.0%
!! TATATATATATATATATATG+GGG + chr5.3:2134368-2134387 None:intergenic 5.0%
!! TATTATTTAAATAATACAAT+AGG - chr5.3:2134095-2134114 MS.gene055461:intron 5.0%
AGAGCTCTTCCAAAGCTTGC+AGG - chr5.3:2132281-2132300 MS.gene055461:intron 50.0%
GGTTAGATCCAGTGACACAC+AGG - chr5.3:2133306-2133325 MS.gene055461:CDS 50.0%
CGGAGAGACGGACATGTTAC+TGG - chr5.3:2134212-2134231 MS.gene055461:intron 55.0%
GTGGCTTGAAGAAGGGTCCA+TGG - chr5.3:2132198-2132217 MS.gene055461:intron 55.0%
GTTCTTGGCCTGTGTGTCAC+TGG + chr5.3:2133317-2133336 None:intergenic 55.0%
CGAACGCAGGTTCGAACACG+TGG - chr5.3:2133030-2133049 MS.gene055461:intron 60.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 2132170 2134932 2132170 ID=MS.gene055461
chr5.3 mRNA 2132170 2134932 2132170 ID=MS.gene055461.t1;Parent=MS.gene055461
chr5.3 exon 2134670 2134932 2134670 ID=MS.gene055461.t1.exon1;Parent=MS.gene055461.t1
chr5.3 CDS 2134670 2134932 2134670 ID=cds.MS.gene055461.t1;Parent=MS.gene055461.t1
chr5.3 exon 2133646 2133891 2133646 ID=MS.gene055461.t1.exon2;Parent=MS.gene055461.t1
chr5.3 CDS 2133646 2133891 2133646 ID=cds.MS.gene055461.t1;Parent=MS.gene055461.t1
chr5.3 exon 2133256 2133423 2133256 ID=MS.gene055461.t1.exon3;Parent=MS.gene055461.t1
chr5.3 CDS 2133256 2133423 2133256 ID=cds.MS.gene055461.t1;Parent=MS.gene055461.t1
chr5.3 exon 2132170 2132194 2132170 ID=MS.gene055461.t1.exon4;Parent=MS.gene055461.t1
chr5.3 CDS 2132170 2132194 2132170 ID=cds.MS.gene055461.t1;Parent=MS.gene055461.t1
Gene Sequence

>MS.gene055461

ATGATGAGAACACCAAGCAATGATGAAAGTGGCTTGAAGAAGGGTCCATGGAGTCCAGAAGAAGATAAAATATTAGTGGATCACATTCAGAAACATGGTCATGGAAGTTGGAGAGCTCTTCCAAAGCTTGCAGGATTGAACAGATGTGGAAAGAGTTGTAGACTAAGATGGAATAATTATCTAAGGCCTGATATTAGAAGAGGAAAATTCTCTGATGAAGAAGAAAATCTCATCATCAATTTACATTCAGTTCTTGGAAATAAGTAAGCTTCATCATTATTTCTTTGATTCATGGTTTGTTTGTTATAATTATAAAAGAAATATTTTTTATATTTCAATAATTTAGAGATTTTTTTCCTCAAAAAAAAAAATAATTTAGAGAATTTGTATTTTTTTTAAAAAGCAGAAGTTTTTTTTTTTTTTGAAGCAGAAGTTTTTTTAAAAAGCAGAAGTTGTCTTAGCTTTGTTTACCACAATTAAAACTATTTTTTTTTTAAATATTCAGCTATAAATAAGGGTTTTTAGATTTTCAAGATTAGCTACTAAAAAAGTTTATCATTTAAAGAATTTTTTTAGATTTTATTCATTTTTTAAAATAATAATTACTTTTGAATGTTCTTATCCGGATTATTAAAGAAATATGAAGAAAAAAATGCTTCAATCAAGAAGCTGCTTTGAGTAGCTTATTTTAAAGTTATTTTTAATAAAAAAAATTATTTGAAAAGTGATTTTCAACATCGTAAATATACACTAAATTACTTCAATTTTTTAAAAACTTTATAAAATTAACATGCAAATTATTGAATGTCAATTTATTTATTTTATAATATGCAATAACAAATGGATCCTAAAACTATGTTCGAACGCAGGTTCGAACACGTGGTTTTCCACTTCTTCACACTTAAAATGTGTAATTCTCGCCACTTGATTATTTGACAAAAAATAAATAAATTAATAGGTCTTATATATAGTATTTAGTTAATTATGAAAATGAAGTTGTATGTATCGTGATTGTGAATATGAATATGGTTGATTTATTAGGTGGGCAGCTATAGCAACTCATCTTCCAGGAAGGACTGATAATGAAATAAAGAATTTTTGGAACACACATTTGAAGAAAAAGCTAATGCAAATGGGGTTAGATCCAGTGACACACAGGCCAAGAACAGATCACCTAGACCTTCTTAGTAATCTACAACAAATAATATTGAATGCTGCAAACATTGTCACCAGTTGTGACATAAATAATAATGCTCTAAGGCTACAATATTCACTTCTCCCCACAAAGTTTGGTAAATGATGTTTTGGGATTTAATAATAACATACAAAGTTTTTATGATGGTTCCAATATTGGTATTTCTTCTCAAACAATTCAGCCTAATTTGCAAAACTTTGAAGCCCCTCTTCAGCAATTACTACCACAAGAATTTGAGTGCTCTCAGAAATTTGGTGAACAAATTGGTAACACAAATTTTGCTTCAACAATATCATCAAAATTCACTTCCAAAGCTGGTTTTCAGTTTCACCTCAACGTTCAGGAACAGTTAAGGTAGGAGAAGAAAACATGATGATAGATGCAAAAGAGTGTTGTAACACTTCTTCTTCCAACAGCTTTGAAACTTGGGGAGATTTCATAAATGATGATGCAAATGATGCTTATTGGAAAGATTTCATAGAGTAAGTATATTTGCATGCATTTTCTAACTCCACTTGTTTCTAACATGGTTTTTCATAGTATATATTGAAATTTAATTATTATTTCATTTGTCTTTTATTATAAACATCATTTGACACTCACAAACGAGAATTTTATGAAAAAGAGGGTTGAGTATATTTTCTAAACTAATATATAAAGTGGATACACATTTTTTTGCTGAATTTTTTCTTATTTACTATTCATTTAAACTATTTTATCATTTTTAATATATTATTTAAATAATACAATAGGAACAATATTAGAGACTATAAAAAAAACTTATTTTAATGTTAATTTTCAAAAATAATTTATTCTCTTTTTATATAAAATTAAGTGTAACAAAAAGCGGAGAGACGGACATGTTACTGGTGATAATGTAAGAAAGAAAGATAACTACTTCATATGTTAGTGTGTGTGTGTGTGTATATATATATTCATTACTAATATAATTATTTGCTAAAACACACCTTAATAAAAACTAGTGGTGTATCCTAGCAAACCCCATATATATATATATATATATATATATATATATATATATATATATATATATATTATATATTCATTACTAATATAATTATTAGTTTCACTTTAATCAATTTATTATATTATTTCTTTATAAAAAAAATATATAGACATTTAATAATCGTATTAGTCTCACTTTAATAATAATTTATCATTCTATTTCTTCATGAAGAAAGTAATTTATTATATTATTTTTAAAAACATATATCTCAATAAATGTCTACAAACACATATATGAGTAGATGATTAAACTCTTCTATGTTCAAGTAAATTACCAGTAATTAAACTCTTTATATGTATAGTCAATCATATTTCATCATATTGTTTTGTCAATACACTAATTAAAATTGTTTACACATGATAAAAGACACTAAAATATGATTGGCTTAATTTTCATGTTAAACTTGTTTATAATTAATAATAAACTACTATTAAACTCTATTTTTTTTATTATCACAAACTCTATATTATTTGAAGCATGTTATACTCATTTTTATTTCTTTTTATTTATTTGTAGACAACAATATTCAAGCCAGCCATAG
Protein sequence

>MS.gene055461.t1

MMRTPSNDESGLKKGPWSPEEDKILVDHIQKHGHGSWRALPKLAGLNRCGKSCRLRWNNYLRPDIRRGKFSDEEENLIINLHSVLGNKWAAIATHLPGRTDNEIKNFWNTHLKKKLMQMGLDPVTHRPRTDHLDLLSNLQQIILNAANIVTSCDINNNALRLQYSLLPTNWFSVSPQRSGTVKVGEENMMIDAKECCNTSSSNSFETWGDFINDDANDAYWKDFIEQQYSSQP