AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene21778

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene21778.t1 MTR_5g007370 98.997 299 3 0 1 299 1 299 0.0 616
MS.gene21778.t1 MTR_4g478180 51.253 359 115 11 1 306 2 353 3.85e-111 326
MS.gene21778.t1 MTR_5g007310 61.504 226 61 6 98 299 6 229 1.43e-83 251
MS.gene21778.t1 MTR_3g074520 76.510 149 29 1 1 143 1 149 3.32e-82 252
MS.gene21778.t1 MTR_5g029840 42.398 342 146 10 1 299 1 334 2.79e-74 231
MS.gene21778.t1 MTR_6g012690 51.174 213 83 3 1 192 1 213 1.23e-68 218
MS.gene21778.t1 MTR_2g089620 67.347 147 46 1 1 147 1 145 7.77e-68 214
MS.gene21778.t1 MTR_4g091490 68.571 140 43 1 1 139 1 140 9.07e-68 215
MS.gene21778.t1 MTR_2g011660 71.538 130 36 1 1 129 1 130 1.49e-67 214
MS.gene21778.t1 MTR_7g076740 70.543 129 37 1 1 128 1 129 1.14e-65 208
MS.gene21778.t1 MTR_7g011170 66.917 133 44 0 1 133 1 133 2.80e-65 207
MS.gene21778.t1 MTR_4g082290 67.424 132 43 0 1 132 1 132 6.20e-64 207
MS.gene21778.t1 MTR_8g031360 70.769 130 36 2 1 128 1 130 1.05e-63 203
MS.gene21778.t1 MTR_4g082230 66.667 132 44 0 1 132 1 132 1.71e-62 203
MS.gene21778.t1 MTR_7g115650 70.339 118 35 0 1 118 1 118 5.21e-60 191
MS.gene21778.t1 MTR_1g076150 72.881 118 32 0 1 118 1 118 1.50e-59 191
MS.gene21778.t1 MTR_7g110830 70.833 120 35 0 12 131 12 131 1.95e-59 194
MS.gene21778.t1 MTR_5g078140 64.844 128 45 0 1 128 1 128 5.31e-59 192
MS.gene21778.t1 MTR_3g065440 66.142 127 43 0 1 127 1 127 7.31e-59 191
MS.gene21778.t1 MTR_4g102380 64.062 128 46 0 1 128 1 128 1.92e-58 189
MS.gene21778.t1 MTR_1g085040 68.333 120 38 0 12 131 12 131 4.43e-58 191
MS.gene21778.t1 MTR_4g073420 62.500 128 48 0 1 128 1 128 5.45e-58 188
MS.gene21778.t1 MTR_1g085640 68.333 120 38 0 12 131 12 131 7.32e-58 191
MS.gene21778.t1 MTR_1g112760 66.400 125 42 0 12 136 13 137 8.57e-58 186
MS.gene21778.t1 MTR_1g100653 68.644 118 37 0 1 118 1 118 1.52e-57 187
MS.gene21778.t1 MTR_3g097450 61.832 131 50 0 1 131 1 131 4.57e-57 186
MS.gene21778.t1 MTR_3g077110 65.600 125 43 0 12 136 12 136 5.01e-57 187
MS.gene21778.t1 MTR_4g105130 67.500 120 39 0 12 131 12 131 1.03e-56 187
MS.gene21778.t1 MTR_5g079670 61.111 126 49 0 2 127 1 126 1.06e-56 182
MS.gene21778.t1 MTR_7g096930 67.797 118 38 0 1 118 1 118 5.54e-56 182
MS.gene21778.t1 MTR_1g043050 68.376 117 37 0 1 117 1 117 6.06e-56 182
MS.gene21778.t1 MTR_1g043080 67.521 117 38 0 1 117 1 117 7.74e-56 181
MS.gene21778.t1 MTR_8g095390 60.938 128 50 0 1 128 1 128 1.62e-55 182
MS.gene21778.t1 MTR_6g009430 54.225 142 65 0 1 142 1 142 1.94e-55 183
MS.gene21778.t1 MTR_2g064160 66.087 115 39 0 12 126 11 125 3.19e-55 182
MS.gene21778.t1 MTR_7g010210 65.254 118 41 0 1 118 1 118 2.38e-54 178
MS.gene21778.t1 MTR_7g010210 65.254 118 41 0 1 118 1 118 2.64e-54 180
MS.gene21778.t1 MTR_3g083540 61.290 124 48 0 5 128 34 157 3.83e-54 179
MS.gene21778.t1 MTR_3g461490 60.938 128 50 0 1 128 1 128 9.23e-54 178
MS.gene21778.t1 MTR_3g039990 63.025 119 44 0 1 119 2 120 1.45e-53 177
MS.gene21778.t1 MTR_4g121460 65.517 116 40 0 1 116 1 116 4.85e-53 177
MS.gene21778.t1 MTR_5g042030 61.667 120 46 0 11 130 6 125 1.52e-52 174
MS.gene21778.t1 MTR_7g117730 64.655 116 41 0 1 116 1 116 1.98e-52 172
MS.gene21778.t1 MTR_7g087130 63.200 125 44 1 1 123 1 125 2.15e-52 175
MS.gene21778.t1 MTR_7g111290 66.667 123 41 0 12 134 12 134 3.65e-52 176
MS.gene21778.t1 MTR_2g034790 64.655 116 41 0 1 116 1 116 4.30e-52 174
MS.gene21778.t1 MTR_0140s0030 62.931 116 43 0 1 116 2 117 1.72e-51 172
MS.gene21778.t1 MTR_0489s0020 62.931 116 43 0 1 116 2 117 1.72e-51 172
MS.gene21778.t1 MTR_2g089450 62.712 118 44 0 1 118 1 118 2.25e-51 170
MS.gene21778.t1 MTR_8g027345 62.712 118 44 0 1 118 1 118 3.74e-51 171
MS.gene21778.t1 MTR_4g485530 60.317 126 49 1 2 126 1 126 2.15e-50 165
MS.gene21778.t1 MTR_6g012180 63.964 111 40 0 1 111 1 111 2.27e-50 169
MS.gene21778.t1 MTR_2g099740 61.017 118 46 0 8 125 8 125 3.58e-50 171
MS.gene21778.t1 MTR_8g017440 62.069 116 44 0 8 123 8 123 4.52e-50 169
MS.gene21778.t1 MTR_4g125520 63.025 119 44 0 1 119 1 119 5.51e-50 168
MS.gene21778.t1 MTR_0251s0050 60.684 117 45 1 1 116 1 117 6.61e-49 164
MS.gene21778.t1 MTR_8g098860 65.138 109 38 0 8 116 8 116 6.96e-49 166
MS.gene21778.t1 MTR_4g057635 59.231 130 51 2 1 129 1 129 7.38e-49 166
MS.gene21778.t1 MTR_2g067420 66.972 109 36 0 3 111 5 113 1.12e-48 165
MS.gene21778.t1 MTR_1g017000 44.928 207 90 7 1 198 1 192 1.25e-48 163
MS.gene21778.t1 MTR_0008s0280 59.649 114 46 0 1 114 1 114 1.26e-48 162
MS.gene21778.t1 MTR_0063s0090 62.832 113 42 0 1 113 1 113 1.42e-48 162
MS.gene21778.t1 MTR_0008s0470 61.017 118 45 1 1 117 1 118 1.44e-48 164
MS.gene21778.t1 MTR_5g007300 84.091 88 14 0 1 88 53 140 2.33e-48 158
MS.gene21778.t1 MTR_8g017540 62.500 112 42 0 12 123 58 169 2.50e-48 166
MS.gene21778.t1 MTR_8g017500 61.607 112 43 0 12 123 12 123 2.58e-48 165
MS.gene21778.t1 MTR_0008s0390 60.169 118 46 1 1 117 1 118 6.33e-48 162
MS.gene21778.t1 MTR_7g102110 54.610 141 60 3 1 140 1 138 6.75e-48 161
MS.gene21778.t1 MTR_5g010020 66.019 103 35 0 8 110 8 110 6.85e-47 161
MS.gene21778.t1 MTR_2g089420 59.322 118 47 1 1 118 1 117 3.27e-46 162
MS.gene21778.t1 MTR_3g103570 59.322 118 47 1 1 117 1 118 8.64e-46 158
MS.gene21778.t1 MTR_3g052450 61.261 111 43 0 8 118 36 146 1.35e-45 162
MS.gene21778.t1 MTR_4g065017 52.778 144 55 2 2 132 1 144 1.79e-45 157
MS.gene21778.t1 MTR_1g017140 59.322 118 47 1 1 117 1 118 1.87e-45 157
MS.gene21778.t1 MTR_5g014990 58.475 118 48 1 1 117 1 118 3.80e-45 155
MS.gene21778.t1 MTR_1g100667 63.208 106 39 0 13 118 14 119 8.70e-45 153
MS.gene21778.t1 MTR_2g097910 62.857 105 39 0 12 116 20 124 8.91e-45 155
MS.gene21778.t1 MTR_2g095520 60.360 111 43 1 1 110 1 111 1.52e-44 154
MS.gene21778.t1 MTR_3g052430 61.468 109 42 0 10 118 39 147 2.18e-44 159
MS.gene21778.t1 MTR_6g090405 59.322 118 47 1 1 117 1 118 3.69e-44 151
MS.gene21778.t1 MTR_3g011610 62.500 104 39 0 12 115 37 140 3.96e-44 157
MS.gene21778.t1 MTR_1g086510 57.143 119 51 0 4 122 13 131 4.29e-44 151
MS.gene21778.t1 MTR_1g110460 53.279 122 57 0 6 127 20 141 7.58e-44 152
MS.gene21778.t1 MTR_3g028740 63.303 109 40 0 8 116 18 126 7.87e-44 153
MS.gene21778.t1 MTR_7g035075 58.407 113 47 0 6 118 8 120 9.07e-44 149
MS.gene21778.t1 MTR_1g073170 56.481 108 47 0 8 115 16 123 1.02e-43 150
MS.gene21778.t1 MTR_8g017340 61.062 113 43 1 12 123 12 124 1.02e-43 156
MS.gene21778.t1 MTR_8g017390 60.360 111 43 1 8 117 8 118 1.38e-43 155
MS.gene21778.t1 MTR_6g006030 57.895 114 48 0 6 119 8 121 1.58e-43 148
MS.gene21778.t1 MTR_1g045610 56.481 108 47 0 8 115 17 124 2.65e-43 149
MS.gene21778.t1 MTR_8g042410 39.111 225 117 6 12 224 37 253 2.91e-43 155
MS.gene21778.t1 MTR_8g017350 61.062 113 43 1 12 123 12 124 3.76e-43 157
MS.gene21778.t1 MTR_1g021230 64.423 104 37 0 12 115 57 160 5.44e-43 153
MS.gene21778.t1 MTR_4g100720 58.929 112 46 0 12 123 13 124 1.12e-42 145
MS.gene21778.t1 MTR_7g109320 61.207 116 45 0 1 116 1 116 1.80e-42 150
MS.gene21778.t1 MTR_6g055910 60.748 107 42 0 9 115 11 117 2.28e-42 147
MS.gene21778.t1 MTR_4g097570 59.091 110 44 1 1 109 1 110 3.19e-42 147
MS.gene21778.t1 MTR_4g097570 58.559 111 44 2 1 109 1 111 2.82e-41 145
MS.gene21778.t1 MTR_4g128670 57.658 111 46 1 1 110 1 111 7.31e-41 145
MS.gene21778.t1 MTR_1g086530 53.043 115 54 0 8 122 29 143 7.76e-41 143
MS.gene21778.t1 MTR_8g020490 55.932 118 48 1 1 118 1 114 8.01e-41 142
MS.gene21778.t1 MTR_5g079290 54.054 111 51 0 11 121 16 126 1.21e-40 142
MS.gene21778.t1 MTR_2g088170 63.208 106 39 0 10 115 27 132 1.27e-40 147
MS.gene21778.t1 MTR_0197s0010 59.406 101 41 0 16 116 5 105 1.27e-40 141
MS.gene21778.t1 MTR_5g079220 56.075 107 47 0 11 117 20 126 3.16e-40 142
MS.gene21778.t1 MTR_5g079120 53.636 110 51 0 8 117 57 166 5.71e-40 142
MS.gene21778.t1 MTR_5g078800 57.944 107 45 0 11 117 6 112 6.99e-40 140
MS.gene21778.t1 MTR_5g078910 56.604 106 46 0 12 117 7 112 1.43e-39 140
MS.gene21778.t1 MTR_0247s0040 57.692 104 44 0 10 113 5 108 1.48e-38 134
MS.gene21778.t1 MTR_7g017260 55.963 109 46 1 11 117 24 132 1.81e-38 137
MS.gene21778.t1 MTR_3g045430 43.038 158 78 3 1 156 1 148 9.48e-38 136
MS.gene21778.t1 MTR_0001s0360 54.206 107 49 0 11 117 6 112 9.84e-38 134
MS.gene21778.t1 MTR_2g033170 55.556 117 52 0 6 122 18 134 1.18e-37 136
MS.gene21778.t1 MTR_0193s0090 54.630 108 49 0 10 117 5 112 1.44e-37 133
MS.gene21778.t1 MTR_1g062940 42.949 156 81 3 12 161 6 159 1.72e-37 133
MS.gene21778.t1 MTR_5g078860 55.140 107 48 0 11 117 6 112 2.12e-37 135
MS.gene21778.t1 MTR_5g078930 57.282 103 44 0 13 115 10 112 6.12e-37 131
MS.gene21778.t1 MTR_4g063100 53.774 106 49 0 13 118 8 113 1.30e-36 132
MS.gene21778.t1 MTR_8g060940 54.902 102 46 0 11 112 6 107 2.40e-36 130
MS.gene21778.t1 MTR_5g088080 48.855 131 63 3 13 142 13 140 3.73e-36 130
MS.gene21778.t1 MTR_5g088150 48.855 131 63 3 13 142 13 140 3.73e-36 130
MS.gene21778.t1 MTR_5g488210 48.855 131 63 3 13 142 13 140 3.73e-36 130
MS.gene21778.t1 MTR_5g488170 50.413 121 58 2 13 132 13 132 4.87e-36 130
MS.gene21778.t1 MTR_5g088640 48.855 131 63 3 13 142 13 140 4.88e-36 130
MS.gene21778.t1 MTR_2g096380 53.846 104 48 0 12 115 6 109 1.20e-35 129
MS.gene21778.t1 MTR_5g078950 52.427 103 49 0 11 113 6 108 2.17e-35 129
MS.gene21778.t1 MTR_5g062790 49.618 131 62 3 13 142 10 137 2.92e-35 129
MS.gene21778.t1 MTR_7g111290 66.304 92 31 0 43 134 1 92 1.01e-34 129
MS.gene21778.t1 MTR_4g123040 53.043 115 54 0 8 122 20 134 1.91e-34 127
MS.gene21778.t1 MTR_4g029540 53.846 104 47 1 12 114 10 113 7.46e-34 125
MS.gene21778.t1 MTR_8g006470 49.541 109 54 1 7 114 5 113 1.03e-33 125
MS.gene21778.t1 MTR_1g083630 48.760 121 61 1 1 121 1 120 6.14e-33 128
MS.gene21778.t1 MTR_5g088610 43.023 172 84 6 13 182 10 169 1.09e-31 121
MS.gene21778.t1 MTR_4g019370 50.877 114 49 3 14 126 38 145 9.50e-31 118
MS.gene21778.t1 MTR_5g016510 50.909 110 51 2 14 122 5 112 1.27e-29 115
MS.gene21778.t1 MTR_4g094982 52.830 106 41 2 14 115 5 105 1.95e-29 113
MS.gene21778.t1 MTR_4g063100 61.842 76 29 0 43 118 9 84 2.62e-29 112
MS.gene21778.t1 MTR_4g128190 37.576 165 82 3 2 165 1 145 2.82e-29 112
MS.gene21778.t1 MTR_6g015455 51.786 112 51 2 14 124 5 114 1.16e-28 116
MS.gene21778.t1 MTR_6g055910 61.538 78 30 0 38 115 11 88 1.24e-28 110
MS.gene21778.t1 MTR_1g085770 31.562 320 177 12 2 301 1 298 3.37e-28 110
MS.gene21778.t1 MTR_2g096380 61.644 73 28 0 43 115 18 90 1.09e-27 107
MS.gene21778.t1 MTR_7g061330 52.830 106 47 2 12 116 111 214 1.33e-27 112
MS.gene21778.t1 MTR_7g461410 52.830 106 47 2 12 116 111 214 1.33e-27 112
MS.gene21778.t1 MTR_7g061330 52.830 106 47 2 12 116 75 178 1.82e-27 112
MS.gene21778.t1 MTR_3g101290 49.020 102 51 1 14 115 37 137 2.06e-27 107
MS.gene21778.t1 MTR_1g085880 49.600 125 60 3 2 124 1 124 5.98e-27 104
MS.gene21778.t1 MTR_3g110028 49.057 106 51 2 12 116 83 186 9.81e-27 110
MS.gene21778.t1 MTR_3g110028 35.000 100 63 2 14 112 33 131 5.54e-14 72.8
MS.gene21778.t1 MTR_5g049190 47.573 103 51 2 7 108 12 112 1.16e-26 105
MS.gene21778.t1 MTR_1g026870 48.113 106 52 2 12 116 83 186 5.26e-26 108
MS.gene21778.t1 MTR_5g070020 44.762 105 55 2 12 115 120 222 6.19e-26 105
MS.gene21778.t1 MTR_3g463400 45.714 105 54 2 12 115 131 233 9.08e-26 106
MS.gene21778.t1 MTR_3g077650 47.573 103 51 2 14 115 181 281 9.79e-26 106
MS.gene21778.t1 MTR_4g105660 46.602 103 52 2 14 115 180 280 1.06e-25 106
MS.gene21778.t1 MTR_7g037260 44.118 102 56 1 14 115 145 245 1.39e-25 104
MS.gene21778.t1 MTR_1g057980 46.078 102 54 1 9 110 75 175 1.94e-25 103
MS.gene21778.t1 MTR_7g451170 43.137 102 57 1 14 115 191 291 1.68e-24 102
MS.gene21778.t1 MTR_6g074860 46.078 102 52 2 14 114 4 103 2.72e-24 99.0
MS.gene21778.t1 MTR_4g088015 43.564 101 56 1 14 114 221 320 9.95e-24 100
MS.gene21778.t1 MTR_5g082910 48.598 107 51 3 8 112 12 116 1.19e-23 98.2
MS.gene21778.t1 MTR_0023s0210 50.000 82 41 0 7 88 2 83 1.73e-23 92.4
MS.gene21778.t1 MTR_7g035350 42.647 136 67 5 17 149 228 355 2.68e-23 99.8
MS.gene21778.t1 MTR_4g082040 36.310 168 96 5 14 179 105 263 4.04e-23 99.0
MS.gene21778.t1 MTR_6g027360 47.059 102 51 2 10 110 74 173 3.59e-22 94.7
MS.gene21778.t1 MTR_5g041570 43.636 110 59 2 10 118 130 237 4.65e-22 95.9
MS.gene21778.t1 MTR_7g450950 44.330 97 53 1 14 110 157 252 8.92e-22 94.0
MS.gene21778.t1 MTR_6g027340 45.918 98 50 2 14 110 16 111 1.25e-21 90.9
MS.gene21778.t1 MTR_7g037130 41.237 97 56 1 14 110 145 240 1.50e-21 93.6
MS.gene21778.t1 MTR_5g010650 42.857 98 55 1 12 109 108 204 3.86e-21 93.6
MS.gene21778.t1 MTR_3g089045 42.478 113 62 2 4 115 6 116 1.75e-20 89.7
MS.gene21778.t1 MTR_6g027370 40.187 107 61 2 14 119 99 203 5.32e-19 86.3
MS.gene21778.t1 MTR_7g061550 37.624 101 61 1 17 115 10 110 9.59e-19 85.9
MS.gene21778.t1 MTR_7g086960 43.689 103 55 2 14 115 89 189 2.09e-18 84.7
MS.gene21778.t1 MTR_5g038910 39.394 99 59 1 17 115 29 126 1.42e-16 80.1
MS.gene21778.t1 MTR_5g038910 37.288 118 70 2 7 121 16 132 2.06e-16 79.3
MS.gene21778.t1 MTR_8g468380 34.513 113 69 2 7 115 11 122 2.71e-14 73.2
MS.gene21778.t1 MTR_6g055910 63.043 46 17 0 70 115 2 47 1.73e-13 68.6
MS.gene21778.t1 MTR_4g063100 60.870 46 18 0 73 118 4 49 1.79e-13 68.2
MS.gene21778.t1 MTR_2g096380 61.905 42 16 0 74 115 5 46 3.50e-12 64.3
MS.gene21778.t1 MTR_8g017480 53.333 45 21 0 8 52 8 52 5.23e-12 60.5
MS.gene21778.t1 MTR_1g008970 36.190 105 47 2 12 116 108 192 1.45e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene21778.t1 AT5G16770 50.148 337 126 10 1 303 1 329 3.52e-94 282
MS.gene21778.t1 AT5G16770 50.148 337 126 10 1 303 1 329 3.52e-94 282
MS.gene21778.t1 AT5G16770 50.150 333 124 10 1 299 1 325 1.08e-93 281
MS.gene21778.t1 AT5G16770 50.150 333 124 10 1 299 1 325 1.08e-93 281
MS.gene21778.t1 AT3G02940 48.758 322 138 8 1 303 1 314 1.51e-90 273
MS.gene21778.t1 AT3G02940 48.758 322 138 8 1 303 1 314 1.51e-90 273
MS.gene21778.t1 AT3G02940 48.742 318 136 8 1 299 1 310 5.03e-90 271
MS.gene21778.t1 AT5G10280 50.362 276 106 6 1 249 1 272 1.23e-81 250
MS.gene21778.t1 AT1G34670 76.923 143 30 1 1 143 1 140 4.54e-78 242
MS.gene21778.t1 AT5G65230 79.389 131 27 0 1 131 1 131 2.34e-76 236
MS.gene21778.t1 AT4G21440 68.707 147 46 0 1 147 1 147 1.56e-72 228
MS.gene21778.t1 AT4G17785 38.567 363 145 9 1 299 1 349 1.57e-71 225
MS.gene21778.t1 AT4G17785 38.292 363 146 9 1 299 1 349 7.03e-71 223
MS.gene21778.t1 AT3G61250 74.219 128 33 0 1 128 1 128 6.10e-70 219
MS.gene21778.t1 AT5G15310 69.466 131 40 0 1 131 1 131 3.24e-68 213
MS.gene21778.t1 AT5G15310 69.466 131 40 0 1 131 1 131 9.26e-68 214
MS.gene21778.t1 AT5G15310 69.466 131 40 0 1 131 1 131 1.02e-67 214
MS.gene21778.t1 AT3G01140 68.421 133 42 0 1 133 1 133 1.43e-67 214
MS.gene21778.t1 AT3G01140 67.669 133 43 0 1 133 44 176 2.73e-66 213
MS.gene21778.t1 AT4G05100 69.231 130 39 1 1 129 1 130 1.21e-65 209
MS.gene21778.t1 AT4G28110 68.992 129 40 0 1 129 1 129 1.28e-64 205
MS.gene21778.t1 AT5G54230 62.179 156 52 1 12 160 12 167 3.69e-64 205
MS.gene21778.t1 AT5G60890 65.625 128 44 0 1 128 1 128 3.78e-61 196
MS.gene21778.t1 AT4G22680 67.188 128 42 0 1 128 1 128 3.50e-60 193
MS.gene21778.t1 AT1G22640 51.497 167 81 0 1 167 1 167 3.65e-60 192
MS.gene21778.t1 AT1G66230 65.625 128 44 0 1 128 1 128 5.72e-60 193
MS.gene21778.t1 AT1G57560 57.143 154 61 1 1 149 1 154 6.30e-60 192
MS.gene21778.t1 AT1G57560 67.500 120 39 0 12 131 12 131 9.79e-60 193
MS.gene21778.t1 AT1G18570 61.268 142 54 1 1 141 1 142 1.63e-59 194
MS.gene21778.t1 AT5G61420 64.844 128 45 0 1 128 1 128 2.31e-59 194
MS.gene21778.t1 AT5G26660 59.864 147 58 1 12 157 12 158 2.33e-59 194
MS.gene21778.t1 AT5G16600 65.649 131 45 0 1 131 1 131 4.07e-59 192
MS.gene21778.t1 AT4G12350 65.625 128 44 0 1 128 1 128 8.26e-59 190
MS.gene21778.t1 AT5G07690 64.844 128 45 0 1 128 1 128 2.19e-58 191
MS.gene21778.t1 AT4G34990 63.281 128 47 0 1 128 1 128 4.57e-58 188
MS.gene21778.t1 AT4G09460 63.780 127 46 0 1 127 1 127 7.71e-58 186
MS.gene21778.t1 AT1G09540 70.085 117 35 0 12 128 12 128 1.35e-57 189
MS.gene21778.t1 AT1G74080 62.595 131 49 0 1 131 1 131 1.81e-57 188
MS.gene21778.t1 AT4G38620 62.500 128 48 0 1 128 1 128 2.01e-57 186
MS.gene21778.t1 AT5G07700 63.281 128 47 0 1 128 1 128 3.42e-57 187
MS.gene21778.t1 AT5G07700 63.281 128 47 0 1 128 1 128 3.42e-57 187
MS.gene21778.t1 AT2G16720 62.205 127 48 0 1 127 1 127 6.17e-57 185
MS.gene21778.t1 AT1G35515 61.905 126 48 0 1 126 1 126 1.43e-56 182
MS.gene21778.t1 AT3G13540 62.400 125 47 0 4 128 15 139 4.09e-56 182
MS.gene21778.t1 AT3G23250 68.966 116 36 0 1 116 1 116 4.66e-56 183
MS.gene21778.t1 AT3G12720 68.696 115 36 0 12 126 22 136 5.91e-56 183
MS.gene21778.t1 AT2G31180 47.208 197 83 3 1 180 1 193 1.10e-55 181
MS.gene21778.t1 AT4G01680 67.500 120 39 0 12 131 12 131 2.25e-55 180
MS.gene21778.t1 AT1G06180 69.828 116 35 0 1 116 1 116 3.20e-55 179
MS.gene21778.t1 AT5G62320 60.606 132 45 1 3 127 4 135 7.05e-55 179
MS.gene21778.t1 AT4G01680 67.500 120 39 0 12 131 12 131 1.10e-54 181
MS.gene21778.t1 AT5G56110 60.156 128 51 0 1 128 1 128 4.65e-54 179
MS.gene21778.t1 AT5G14340 61.069 131 51 0 1 131 13 143 1.20e-53 176
MS.gene21778.t1 AT3G28910 63.115 122 45 0 1 122 1 122 1.28e-53 178
MS.gene21778.t1 AT1G56160 68.421 114 36 0 3 116 5 118 2.03e-53 176
MS.gene21778.t1 AT3G47600 63.866 119 43 0 1 119 1 119 3.12e-53 177
MS.gene21778.t1 AT1G74430 60.769 130 51 0 1 130 1 130 1.40e-52 174
MS.gene21778.t1 AT1G08810 53.205 156 70 1 1 156 1 153 3.16e-52 173
MS.gene21778.t1 AT5G62470 62.185 119 45 0 1 119 1 119 6.43e-52 174
MS.gene21778.t1 AT4G01680 61.364 132 39 1 12 131 12 143 2.91e-51 172
MS.gene21778.t1 AT1G18710 59.398 133 54 0 1 133 1 133 3.90e-51 170
MS.gene21778.t1 AT1G79180 65.517 116 40 0 3 118 5 120 8.65e-51 170
MS.gene21778.t1 AT1G74650 63.025 119 44 0 1 119 1 119 8.87e-51 171
MS.gene21778.t1 AT5G49330 62.931 116 43 0 1 116 1 116 1.74e-50 170
MS.gene21778.t1 AT5G62470 62.185 119 44 1 1 119 1 118 3.67e-50 170
MS.gene21778.t1 AT3G13890 60.156 128 51 0 12 139 12 139 7.25e-50 169
MS.gene21778.t1 AT1G63910 56.296 135 59 0 8 142 8 142 1.40e-49 169
MS.gene21778.t1 AT1G16490 64.912 114 40 0 3 116 5 118 2.16e-49 166
MS.gene21778.t1 AT3G62610 62.931 116 43 0 1 116 1 116 3.57e-49 167
MS.gene21778.t1 AT2G47460 62.931 116 43 0 1 116 1 116 5.87e-49 167
MS.gene21778.t1 AT3G12820 63.793 116 42 0 3 118 5 120 1.01e-48 162
MS.gene21778.t1 AT3G28470 56.115 139 61 0 1 139 1 139 4.50e-47 160
MS.gene21778.t1 AT2G36890 58.268 127 52 1 1 126 1 127 5.14e-47 160
MS.gene21778.t1 AT3G13890 56.204 137 51 1 12 139 12 148 7.40e-47 161
MS.gene21778.t1 AT5G40330 58.621 116 48 0 1 116 1 116 9.05e-47 157
MS.gene21778.t1 AT2G36890 58.268 127 52 1 1 126 42 168 1.04e-46 160
MS.gene21778.t1 AT5G65790 61.017 118 45 1 1 117 1 118 2.27e-46 160
MS.gene21778.t1 AT5G23000 58.475 118 48 1 1 117 1 118 3.18e-46 159
MS.gene21778.t1 AT5G14750 58.261 115 46 1 4 116 6 120 7.54e-46 154
MS.gene21778.t1 AT5G57620 60.169 118 46 1 1 117 1 118 1.92e-45 157
MS.gene21778.t1 AT5G06100 41.951 205 107 6 8 208 28 224 2.18e-45 160
MS.gene21778.t1 AT3G49690 60.169 118 46 1 1 117 1 118 3.41e-45 155
MS.gene21778.t1 AT5G12870 62.963 108 40 0 12 119 18 125 5.80e-45 154
MS.gene21778.t1 AT4G37780 56.780 118 50 1 1 117 1 118 7.66e-45 154
MS.gene21778.t1 AT3G24310 59.813 107 43 0 9 115 15 121 9.77e-45 153
MS.gene21778.t1 AT5G06100 41.951 205 107 6 8 208 28 224 1.11e-44 159
MS.gene21778.t1 AT5G06100 41.951 205 107 6 8 208 28 224 1.11e-44 159
MS.gene21778.t1 AT5G06100 41.951 205 107 6 8 208 28 224 1.11e-44 159
MS.gene21778.t1 AT5G06100 41.951 205 107 6 8 208 28 224 1.11e-44 159
MS.gene21778.t1 AT3G11440 61.321 106 41 0 10 115 39 144 1.19e-44 158
MS.gene21778.t1 AT1G79180 50.336 149 41 1 3 118 5 153 1.68e-44 154
MS.gene21778.t1 AT3G27810 59.091 110 45 0 9 118 17 126 4.12e-44 150
MS.gene21778.t1 AT3G11440 61.321 106 41 0 10 115 39 144 5.13e-44 158
MS.gene21778.t1 AT3G11440 61.321 106 41 0 10 115 39 144 5.13e-44 158
MS.gene21778.t1 AT3G11440 61.321 106 41 0 10 115 39 144 5.13e-44 158
MS.gene21778.t1 AT3G01530 58.716 109 45 0 8 116 21 129 5.59e-44 149
MS.gene21778.t1 AT3G08500 61.818 110 42 0 7 116 25 134 1.04e-43 152
MS.gene21778.t1 AT2G32460 54.400 125 56 1 11 135 5 128 1.07e-43 155
MS.gene21778.t1 AT5G40350 57.143 112 48 0 9 120 14 125 1.10e-43 149
MS.gene21778.t1 AT2G32460 54.400 125 56 1 11 135 17 140 1.11e-43 156
MS.gene21778.t1 AT3G30210 60.577 104 41 0 11 114 26 129 1.36e-43 150
MS.gene21778.t1 AT5G35550 61.062 113 44 0 4 116 6 118 1.66e-43 150
MS.gene21778.t1 AT3G27920 54.622 119 51 1 2 117 1 119 3.51e-43 148
MS.gene21778.t1 AT4G13480 57.944 107 45 0 9 115 3 109 1.98e-42 147
MS.gene21778.t1 AT5G55020 60.000 110 43 1 12 121 26 134 4.73e-42 152
MS.gene21778.t1 AT5G52600 57.944 107 45 0 9 115 9 115 6.62e-42 144
MS.gene21778.t1 AT2G26960 55.833 120 48 2 6 121 10 128 1.01e-41 149
MS.gene21778.t1 AT1G48000 48.951 143 71 1 12 152 32 174 1.39e-41 144
MS.gene21778.t1 AT5G26660 59.649 114 45 1 45 157 14 127 1.51e-41 146
MS.gene21778.t1 AT4G26930 61.165 103 40 0 12 114 19 121 2.63e-41 147
MS.gene21778.t1 AT2G47190 51.667 120 57 1 4 122 11 130 2.54e-40 142
MS.gene21778.t1 AT3G48920 58.824 102 42 0 13 114 19 120 3.11e-40 141
MS.gene21778.t1 AT1G68320 54.054 111 51 0 12 122 19 129 1.54e-39 140
MS.gene21778.t1 AT1G25340 51.304 115 56 0 13 127 19 133 1.83e-39 140
MS.gene21778.t1 AT5G52260 61.321 106 41 0 13 118 13 118 1.95e-39 139
MS.gene21778.t1 AT1G66370 57.143 105 45 0 11 115 7 111 5.86e-39 137
MS.gene21778.t1 AT4G25560 59.434 106 43 0 13 118 11 116 6.95e-39 138
MS.gene21778.t1 AT3G46130 52.727 110 52 0 9 118 6 115 6.39e-38 135
MS.gene21778.t1 AT3G06490 56.522 115 50 0 8 122 15 129 3.07e-37 135
MS.gene21778.t1 AT5G59780 52.830 106 50 0 13 118 9 114 3.93e-37 132
MS.gene21778.t1 AT1G66380 60.000 105 42 0 11 115 7 111 9.74e-37 128
MS.gene21778.t1 AT3G53200 56.075 107 47 0 9 115 6 112 1.60e-36 131
MS.gene21778.t1 AT5G49620 52.101 119 57 0 4 122 18 136 9.17e-36 131
MS.gene21778.t1 AT1G56650 59.048 105 43 0 11 115 7 111 2.62e-35 128
MS.gene21778.t1 AT1G25340 48.696 115 54 1 13 127 19 128 6.59e-35 128
MS.gene21778.t1 AT3G60460 50.000 114 56 1 2 114 1 114 8.69e-35 128
MS.gene21778.t1 AT1G66390 58.095 105 44 0 11 115 7 111 1.02e-34 127
MS.gene21778.t1 AT1G25340 48.696 115 54 1 13 127 19 128 1.29e-34 128
MS.gene21778.t1 AT2G26950 41.379 174 88 5 1 160 1 174 3.19e-34 129
MS.gene21778.t1 AT3G47600 68.000 75 24 0 45 119 39 113 2.57e-32 122
MS.gene21778.t1 AT5G49620 46.617 133 57 1 4 122 18 150 4.64e-32 121
MS.gene21778.t1 AT5G14750 62.821 78 26 1 39 116 12 86 6.09e-31 114
MS.gene21778.t1 AT1G18960 47.541 122 55 3 10 128 6 121 6.92e-31 118
MS.gene21778.t1 AT3G12820 69.014 71 22 0 48 118 2 72 9.23e-31 114
MS.gene21778.t1 AT5G35550 65.385 78 27 0 39 116 44 121 1.21e-30 116
MS.gene21778.t1 AT1G22640 47.706 109 57 0 59 167 2 110 3.85e-30 113
MS.gene21778.t1 AT3G27810 63.514 74 27 0 45 118 4 77 1.67e-29 111
MS.gene21778.t1 AT5G40350 61.842 76 29 0 45 120 5 80 3.27e-29 110
MS.gene21778.t1 AT5G40360 37.500 160 86 4 1 160 145 290 9.26e-29 113
MS.gene21778.t1 AT4G37260 50.000 114 56 1 2 115 1 113 2.39e-28 111
MS.gene21778.t1 AT5G02320 52.830 106 47 2 12 116 125 228 2.49e-28 114
MS.gene21778.t1 AT5G02320 52.830 106 47 2 12 116 125 228 2.49e-28 114
MS.gene21778.t1 AT5G02320 52.830 106 47 2 12 116 65 168 2.79e-28 114
MS.gene21778.t1 AT3G55730 50.909 110 45 2 14 119 56 160 3.09e-28 112
MS.gene21778.t1 AT3G46130 60.000 75 30 0 44 118 9 83 3.59e-28 108
MS.gene21778.t1 AT2G23290 53.922 102 46 1 14 115 13 113 3.78e-28 110
MS.gene21778.t1 AT5G59780 60.811 74 29 0 45 118 20 93 6.28e-28 108
MS.gene21778.t1 AT3G46130 60.811 74 29 0 45 118 20 93 8.46e-28 108
MS.gene21778.t1 AT2G39880 50.943 106 43 2 14 115 50 150 1.40e-27 110
MS.gene21778.t1 AT3G53200 64.789 71 25 0 45 115 9 79 1.40e-27 107
MS.gene21778.t1 AT4G18770 41.667 120 69 1 9 128 212 330 3.59e-27 110
MS.gene21778.t1 AT1G71030 51.111 90 43 1 38 127 7 95 3.73e-27 105
MS.gene21778.t1 AT3G09370 48.739 119 54 3 12 125 133 249 7.33e-27 110
MS.gene21778.t1 AT1G71030 54.545 77 35 0 51 127 5 81 7.60e-27 104
MS.gene21778.t1 AT3G27785 44.860 107 58 1 9 115 184 289 7.67e-27 109
MS.gene21778.t1 AT3G09370 48.739 119 54 3 12 125 128 244 7.69e-27 110
MS.gene21778.t1 AT3G09370 48.739 119 54 3 12 125 141 257 9.98e-27 110
MS.gene21778.t1 AT3G09230 47.222 108 48 2 14 117 55 157 1.53e-26 108
MS.gene21778.t1 AT3G50060 50.000 102 50 1 14 115 6 106 7.24e-26 104
MS.gene21778.t1 AT4G32730 48.113 106 52 2 12 116 85 188 8.05e-26 107
MS.gene21778.t1 AT4G32730 35.000 100 63 2 14 112 35 133 1.43e-14 74.7
MS.gene21778.t1 AT4G32730 48.113 106 52 2 12 116 85 188 8.30e-26 108
MS.gene21778.t1 AT4G32730 35.000 100 63 2 14 112 35 133 1.55e-14 74.7
MS.gene21778.t1 AT4G32730 48.113 106 52 2 12 116 85 188 8.30e-26 108
MS.gene21778.t1 AT4G32730 35.000 100 63 2 14 112 35 133 1.55e-14 74.7
MS.gene21778.t1 AT4G32730 48.113 106 52 2 12 116 85 188 8.30e-26 108
MS.gene21778.t1 AT4G32730 35.000 100 63 2 14 112 35 133 1.55e-14 74.7
MS.gene21778.t1 AT4G32730 48.113 106 52 2 12 116 85 188 8.30e-26 108
MS.gene21778.t1 AT4G32730 35.000 100 63 2 14 112 35 133 1.55e-14 74.7
MS.gene21778.t1 AT5G58850 46.667 105 53 2 12 115 103 205 1.00e-25 106
MS.gene21778.t1 AT5G11510 45.133 113 58 2 12 121 79 190 1.35e-25 107
MS.gene21778.t1 AT5G11510 31.000 100 67 2 14 112 29 127 5.95e-11 63.9
MS.gene21778.t1 AT5G11510 45.133 113 58 2 12 121 79 190 1.35e-25 107
MS.gene21778.t1 AT5G11510 31.000 100 67 2 14 112 29 127 5.95e-11 63.9
MS.gene21778.t1 AT5G11510 45.133 113 58 2 12 121 79 190 1.35e-25 107
MS.gene21778.t1 AT5G11510 31.000 100 67 2 14 112 29 127 5.95e-11 63.9
MS.gene21778.t1 AT5G11510 45.133 113 58 2 12 121 79 190 1.76e-25 107
MS.gene21778.t1 AT5G11510 31.000 100 67 2 14 112 29 127 5.44e-11 63.9
MS.gene21778.t1 AT5G11510 45.133 113 58 2 12 121 79 190 1.89e-25 107
MS.gene21778.t1 AT5G11510 31.000 100 67 2 14 112 29 127 5.35e-11 63.9
MS.gene21778.t1 AT5G67300 51.456 103 47 2 14 115 6 106 2.51e-25 103
MS.gene21778.t1 AT5G11050 45.631 103 53 2 14 115 105 205 2.63e-25 105
MS.gene21778.t1 AT1G66380 64.384 73 26 0 43 115 6 78 5.08e-25 97.1
MS.gene21778.t1 AT3G23250 70.690 58 17 0 59 116 2 59 2.88e-24 98.6
MS.gene21778.t1 AT1G17950 41.880 117 61 3 14 129 5 115 8.16e-23 95.1
MS.gene21778.t1 AT1G69560 42.342 111 61 2 9 118 102 210 1.09e-22 96.7
MS.gene21778.t1 AT1G69560 42.342 111 61 2 9 118 118 226 1.18e-22 96.7
MS.gene21778.t1 AT1G66380 48.980 98 49 1 11 107 7 104 1.55e-22 90.5
MS.gene21778.t1 AT5G14750 62.069 58 22 0 59 116 2 59 4.99e-22 90.1
MS.gene21778.t1 AT5G14750 62.069 58 22 0 59 116 2 59 4.99e-22 90.1
MS.gene21778.t1 AT1G26780 44.444 108 57 2 12 118 96 201 1.24e-21 92.8
MS.gene21778.t1 AT3G29020 39.200 125 69 2 14 132 65 188 1.55e-21 91.3
MS.gene21778.t1 AT1G26780 44.444 108 57 2 12 118 96 201 1.88e-21 93.6
MS.gene21778.t1 AT3G29020 39.200 125 69 2 14 132 67 190 7.30e-21 90.9
MS.gene21778.t1 AT1G73410 42.735 117 58 3 14 129 6 114 8.68e-21 89.7
MS.gene21778.t1 AT1G73410 44.340 106 56 2 14 118 6 109 2.29e-20 87.4
MS.gene21778.t1 AT4G33450 39.091 110 64 2 7 115 12 119 4.46e-20 87.8
MS.gene21778.t1 AT2G25230 39.496 119 67 3 9 124 21 137 6.17e-20 87.0
MS.gene21778.t1 AT5G61420 72.917 48 13 0 81 128 2 49 7.50e-20 87.8
MS.gene21778.t1 AT4G00540 42.857 112 58 3 12 119 101 210 1.94e-19 88.2
MS.gene21778.t1 AT5G17800 40.000 105 62 1 14 118 93 196 2.49e-19 87.0
MS.gene21778.t1 AT4G00540 42.857 112 58 3 12 119 99 208 3.28e-19 87.8
MS.gene21778.t1 AT5G15310 72.727 44 12 0 88 131 9 52 4.00e-18 82.4
MS.gene21778.t1 AT2G37630 38.614 101 60 1 17 115 7 107 6.68e-18 83.6
MS.gene21778.t1 AT1G14350 41.414 99 57 1 17 115 28 125 5.41e-17 81.3
MS.gene21778.t1 AT1G14350 41.414 99 57 1 17 115 28 125 5.41e-17 81.3
MS.gene21778.t1 AT2G02820 38.095 105 64 1 17 121 33 136 8.54e-17 80.1
MS.gene21778.t1 AT2G02820 40.404 99 58 1 17 115 33 130 1.23e-16 80.5
MS.gene21778.t1 AT2G02820 40.404 99 58 1 17 115 33 130 1.36e-16 80.5
MS.gene21778.t1 AT5G40430 35.294 102 64 1 9 110 49 148 4.44e-16 77.0
MS.gene21778.t1 AT4G28110 69.048 42 13 0 88 129 4 45 7.28e-16 75.1
MS.gene21778.t1 AT1G74650 69.767 43 13 0 77 119 1 43 1.29e-14 72.8
MS.gene21778.t1 AT4G25560 64.583 48 17 0 71 118 3 50 1.79e-14 71.6
MS.gene21778.t1 AT3G28910 63.043 46 17 0 77 122 1 46 5.13e-14 70.9
MS.gene21778.t1 AT1G22640 46.774 62 33 0 88 149 16 77 1.52e-13 68.2
MS.gene21778.t1 AT5G14340 61.364 44 17 0 88 131 10 53 2.78e-13 67.8
MS.gene21778.t1 AT5G59780 56.522 46 20 0 73 118 4 49 3.82e-13 67.0
MS.gene21778.t1 AT3G46130 56.522 46 20 0 73 118 4 49 4.54e-13 67.0
MS.gene21778.t1 AT5G39700 36.458 96 60 1 15 110 57 151 1.32e-12 65.9
MS.gene21778.t1 AT1G74430 51.852 54 26 0 77 130 8 61 1.80e-12 65.9

Find 51 sgRNAs with CRISPR-Local

Find 91 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGAAATTTGGTGAACAAAT+TGG 0.188234 5.2:-1696349 MS.gene21778:CDS
ATCAATTTACATTCAGTTCT+TGG 0.192562 5.2:-1697510 MS.gene21778:CDS
TTTGAGTGCTCTCAGAAATT+TGG 0.230778 5.2:-1696361 MS.gene21778:CDS
TTGAGAAGAAATACCAATAT+TGG 0.243128 5.2:+1696444 None:intergenic
ATGATGCAAATGATGCTTAT+TGG 0.261081 5.2:-1696150 MS.gene21778:CDS
AAGTTTGGTAAATGATGTTT+TGG 0.283929 5.2:-1696503 MS.gene21778:CDS
TTCACTTCTCCCACAAAGTT+TGG 0.285823 5.2:-1696518 MS.gene21778:CDS
CTTCCAACAGCTTTGAAACT+TGG 0.298815 5.2:-1696189 MS.gene21778:CDS
CTGTTCAATCCTGCAAGCTT+TGG 0.320153 5.2:+1697624 None:intergenic
GTTCTTGGCCTGTGTGTCAC+TGG 0.373245 5.2:+1696643 None:intergenic
AGAGCTCTTCCAAAGCTTGC+AGG 0.374930 5.2:-1697633 MS.gene21778:CDS
TAAGATGGAACAATTATCTA+AGG 0.378667 5.2:-1697581 MS.gene21778:CDS
ACATAAATAATAATGCTCTA+AGG 0.382840 5.2:-1696549 MS.gene21778:CDS
ATCAAATTCACTTCCAAAGC+TGG 0.387270 5.2:-1696299 MS.gene21778:CDS
TCAGTTTCACCTCAACGTTC+AGG 0.388670 5.2:-1696274 MS.gene21778:CDS
AGCTATAGCAACTCATCTTC+CGG 0.404045 5.2:-1696740 MS.gene21778:CDS
ATTATTATTTATGTCACAAC+TGG 0.413574 5.2:+1696558 None:intergenic
TTTGTTGTAGATTACTAAGA+AGG 0.414081 5.2:+1696608 None:intergenic
TTCCAACAGCTTTGAAACTT+GGG 0.419224 5.2:-1696188 MS.gene21778:CDS
GCTATAGCAACTCATCTTCC+GGG 0.426183 5.2:-1696739 MS.gene21778:CDS
AAGCCACTTTCATCATTGCT+TGG 0.426214 5.2:+1697732 None:intergenic
AGAAGAAGATAAAATATTAG+TGG 0.429587 5.2:-1697688 MS.gene21778:CDS
AGGTCTAGGTGATCTGTTCT+TGG 0.441362 5.2:+1696628 None:intergenic
TTATCTTCTTCTGGACTCCA+TGG 0.442300 5.2:+1697699 None:intergenic
ACATCATTTACCAAACTTTG+TGG 0.442943 5.2:+1696508 None:intergenic
TCCCCAAGTTTCAAAGCTGT+TGG 0.451141 5.2:+1696186 None:intergenic
GGTGAAACTGAAACCAGCTT+TGG 0.451442 5.2:+1696286 None:intergenic
CATCATTTACCAAACTTTGT+GGG 0.451886 5.2:+1696509 None:intergenic
AGAAACATGGTCATGGAAGT+TGG 0.468034 5.2:-1697656 MS.gene21778:CDS
ATTTCATTATCAGTCCTTCC+CGG 0.469673 5.2:+1696721 None:intergenic
ATGAGAATATTGGCTATGGC+TGG 0.477414 5.2:+1695136 None:intergenic
TCAACGTTCAGGAACAGTTA+AGG 0.503558 5.2:-1696263 MS.gene21778:CDS
GTAGATTACTAAGAAGGTCT+AGG 0.504439 5.2:+1696614 None:intergenic
GAAAGAGTTGTAGACTAAGA+TGG 0.506080 5.2:-1697596 MS.gene21778:CDS
TGATGAAAGTGGCTTGAAGA+AGG 0.511342 5.2:-1697724 MS.gene21778:CDS
TCCAACAGCTTTGAAACTTG+GGG 0.538039 5.2:-1696187 MS.gene21778:CDS
GTGGTAGTAATTGCTGAAGA+GGG 0.540930 5.2:+1696389 None:intergenic
TGTGGTAGTAATTGCTGAAG+AGG 0.554185 5.2:+1696388 None:intergenic
GATGAAAGTGGCTTGAAGAA+GGG 0.567181 5.2:-1697723 MS.gene21778:CDS
GTGGCTTGAAGAAGGGTCCA+TGG 0.567632 5.2:-1697716 MS.gene21778:CDS
ACACCAAGCAATGATGAAAG+TGG 0.569545 5.2:-1697735 MS.gene21778:CDS
CTAAGGCCTGATATTAGAAG+AGG 0.576748 5.2:-1697564 MS.gene21778:CDS
CACATTCAGAAACATGGTCA+TGG 0.577172 5.2:-1697663 MS.gene21778:CDS
TGAGAGCACTCAAATTCTTG+TGG 0.582345 5.2:+1696370 None:intergenic
CTTGCAGGATTGAACAGATG+TGG 0.598027 5.2:-1697618 MS.gene21778:CDS
TAGCAACTCATCTTCCGGGA+AGG 0.630022 5.2:-1696735 MS.gene21778:CDS
TGGTAGTAATTGCTGAAGAG+GGG 0.633640 5.2:+1696390 None:intergenic
CGTTCAGGAACAGTTAAGGT+AGG 0.636839 5.2:-1696259 MS.gene21778:CDS
GGTTAGATCCAGTGACACAC+AGG 0.640850 5.2:-1696651 MS.gene21778:CDS
TTAACTGTTCCTGAACGTTG+AGG 0.645603 5.2:+1696265 None:intergenic
GTGGATCACATTCAGAAACA+TGG 0.652058 5.2:-1697669 MS.gene21778:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCATTACTAATATAATTATT+AGG - chr5.2:1697259-1697278 MS.gene21778:intron 10.0%
!!! AAAAAAAATAGTTTTAATTG+TGG + chr5.2:1695581-1695600 None:intergenic 10.0%
!!! ATAATGAAATAAAGAATTTT+TGG - chr5.2:1696185-1696204 MS.gene21778:CDS 10.0%
!! AAATATTCAGCTATAAATAA+GGG - chr5.2:1695603-1695622 MS.gene21778:intron 15.0%
!! AGTAATTTAGTGTATATTTA+CGG + chr5.2:1695847-1695866 None:intergenic 15.0%
!! TAAATATTCAGCTATAAATA+AGG - chr5.2:1695602-1695621 MS.gene21778:intron 15.0%
!! TTATAATATGCAATAACAAA+TGG - chr5.2:1695928-1695947 MS.gene21778:intron 15.0%
!! TTCATATTTCTTTAATAATC+CGG + chr5.2:1695733-1695752 None:intergenic 15.0%
!! TTCTAAACTAATATATAAAG+TGG - chr5.2:1696938-1696957 MS.gene21778:intron 15.0%
!!! ATTTTTGTCAAATAATTTAG+TGG + chr5.2:1696030-1696049 None:intergenic 15.0%
!!! CTGAATTATTTTTTTTTTTG+AGG + chr5.2:1695509-1695528 None:intergenic 15.0%
!! AAAAGACACTAAAATATGAT+TGG - chr5.2:1697587-1697606 MS.gene21778:CDS 20.0%
!! AAATTAAGTGTAACAAAAAG+CGG - chr5.2:1697125-1697144 MS.gene21778:intron 20.0%
!! ACATAAATAATAATGCTCTA+AGG - chr5.2:1696344-1696363 MS.gene21778:CDS 20.0%
!! AGAAGAAGATAAAATATTAG+TGG - chr5.2:1695205-1695224 MS.gene21778:intron 20.0%
!! ATTATTATTTATGTCACAAC+TGG + chr5.2:1696338-1696357 None:intergenic 20.0%
!! CATATAAAGAGTTTAATTAC+TGG + chr5.2:1697502-1697521 None:intergenic 20.0%
!!! AACATACAAAGTTTTTATGA+TGG - chr5.2:1696424-1696443 MS.gene21778:CDS 20.0%
!!! ACTAATATTTTATCTTCTTC+TGG + chr5.2:1695206-1695225 None:intergenic 20.0%
!!! ATCATTATTTCTTTGATTCA+TGG - chr5.2:1695421-1695440 MS.gene21778:intron 20.0%
!!! ATGAATATGGTTGATTTATT+AGG - chr5.2:1696125-1696144 MS.gene21778:intron 20.0%
! AAGAAAAAGCTAATGCAAAT+GGG - chr5.2:1696220-1696239 MS.gene21778:CDS 25.0%
! ATCAATTTACATTCAGTTCT+TGG - chr5.2:1695383-1695402 MS.gene21778:intron 25.0%
! CATGATTGTGAATATGAATA+TGG - chr5.2:1696112-1696131 MS.gene21778:intron 25.0%
! TAAGATGGAACAATTATCTA+AGG - chr5.2:1695312-1695331 MS.gene21778:intron 25.0%
! TTGAGAAGAAATACCAATAT+TGG + chr5.2:1696452-1696471 None:intergenic 25.0%
!! AAGTTTGGTAAATGATGTTT+TGG - chr5.2:1696390-1696409 MS.gene21778:CDS 25.0%
!! AATATGGTTGATTTATTAGG+TGG - chr5.2:1696128-1696147 MS.gene21778:intron 25.0%
!! AATTTTCCTCTTCTAATATC+AGG + chr5.2:1695338-1695357 None:intergenic 25.0%
!! ACGAGAATTTTATGAAAAAG+AGG - chr5.2:1696903-1696922 MS.gene21778:intron 25.0%
!! AGTTTGGTAAATGATGTTTT+GGG - chr5.2:1696391-1696410 MS.gene21778:CDS 25.0%
!! ATATGGTTGATTTATTAGGT+GGG - chr5.2:1696129-1696148 MS.gene21778:intron 25.0%
!! CGAGAATTTTATGAAAAAGA+GGG - chr5.2:1696904-1696923 MS.gene21778:intron 25.0%
!! TACTTTTGAATGTTCTTATC+CGG - chr5.2:1695711-1695730 MS.gene21778:intron 25.0%
!! TTTGTTGTAGATTACTAAGA+AGG + chr5.2:1696288-1696307 None:intergenic 25.0%
!! TTTTATGATGGTTCCAATAT+TGG - chr5.2:1696436-1696455 MS.gene21778:CDS 25.0%
AAAACCATGTTAGAAACAAG+TGG + chr5.2:1696812-1696831 None:intergenic 30.0%
ACATCATTTACCAAACTTTG+TGG + chr5.2:1696388-1696407 None:intergenic 30.0%
AGAAAAAGCTAATGCAAATG+GGG - chr5.2:1696221-1696240 MS.gene21778:CDS 30.0%
ATGATGCAAATGATGCTTAT+TGG - chr5.2:1696743-1696762 MS.gene21778:CDS 30.0%
CATCATTTACCAAACTTTGT+GGG + chr5.2:1696387-1696406 None:intergenic 30.0%
GAAGAAAAAGCTAATGCAAA+TGG - chr5.2:1696219-1696238 MS.gene21778:CDS 30.0%
! CAGAAATTTGGTGAACAAAT+TGG - chr5.2:1696544-1696563 MS.gene21778:CDS 30.0%
!! ACATTTTAAGTGTGAAGAAG+TGG + chr5.2:1695997-1696016 None:intergenic 30.0%
ATCAAATTCACTTCCAAAGC+TGG - chr5.2:1696594-1696613 MS.gene21778:CDS 35.0%
ATTTCATTATCAGTCCTTCC+CGG + chr5.2:1696175-1696194 None:intergenic 35.0%
GAAAGAGTTGTAGACTAAGA+TGG - chr5.2:1695297-1695316 MS.gene21778:intron 35.0%
GTAGATTACTAAGAAGGTCT+AGG + chr5.2:1696282-1696301 None:intergenic 35.0%
TTTGAGTGCTCTCAGAAATT+TGG - chr5.2:1696532-1696551 MS.gene21778:CDS 35.0%
! GCTTCGAAGTTTTGCAAATT+AGG + chr5.2:1696484-1696503 None:intergenic 35.0%
!! AACTCCACTTGTTTCTAACA+TGG - chr5.2:1696805-1696824 MS.gene21778:intron 35.0%
!! TTCCAACAGCTTTGAAACTT+GGG - chr5.2:1696705-1696724 MS.gene21778:CDS 35.0%
ACACCAAGCAATGATGAAAG+TGG - chr5.2:1695158-1695177 MS.gene21778:intron 40.0%
ACTAAAACTATGTTCGAGCG+TGG - chr5.2:1695953-1695972 MS.gene21778:intron 40.0%
AGAAACATGGTCATGGAAGT+TGG - chr5.2:1695237-1695256 MS.gene21778:intron 40.0%
AGCTATAGCAACTCATCTTC+CGG - chr5.2:1696153-1696172 MS.gene21778:CDS 40.0%
CACATTCAGAAACATGGTCA+TGG - chr5.2:1695230-1695249 MS.gene21778:intron 40.0%
CTAAAACTATGTTCGAGCGT+GGG - chr5.2:1695954-1695973 MS.gene21778:intron 40.0%
CTAAGGCCTGATATTAGAAG+AGG - chr5.2:1695329-1695348 MS.gene21778:intron 40.0%
GATGAAAGTGGCTTGAAGAA+GGG - chr5.2:1695170-1695189 MS.gene21778:intron 40.0%
GTGGATCACATTCAGAAACA+TGG - chr5.2:1695224-1695243 MS.gene21778:intron 40.0%
GTGGTAGTAATTGCTGAAGA+GGG + chr5.2:1696507-1696526 None:intergenic 40.0%
TCAACGTTCAGGAACAGTTA+AGG - chr5.2:1696630-1696649 MS.gene21778:CDS 40.0%
TGATGAAAGTGGCTTGAAGA+AGG - chr5.2:1695169-1695188 MS.gene21778:intron 40.0%
TGGTAGTAATTGCTGAAGAG+GGG + chr5.2:1696506-1696525 None:intergenic 40.0%
TGTAACAAAAAGCGGAGAGA+CGG - chr5.2:1697133-1697152 MS.gene21778:intron 40.0%
TGTGGTAGTAATTGCTGAAG+AGG + chr5.2:1696508-1696527 None:intergenic 40.0%
TTAACTGTTCCTGAACGTTG+AGG + chr5.2:1696631-1696650 None:intergenic 40.0%
TTATCTTCTTCTGGACTCCA+TGG + chr5.2:1695197-1695216 None:intergenic 40.0%
TTCACTTCTCCCACAAAGTT+TGG - chr5.2:1696375-1696394 MS.gene21778:CDS 40.0%
! AAGCCACTTTCATCATTGCT+TGG + chr5.2:1695164-1695183 None:intergenic 40.0%
!! CTTCCAACAGCTTTGAAACT+TGG - chr5.2:1696704-1696723 MS.gene21778:CDS 40.0%
!! TCCAACAGCTTTGAAACTTG+GGG - chr5.2:1696706-1696725 MS.gene21778:CDS 40.0%
!! TGAGAGCACTCAAATTCTTG+TGG + chr5.2:1696526-1696545 None:intergenic 40.0%
AGGTCTAGGTGATCTGTTCT+TGG + chr5.2:1696268-1696287 None:intergenic 45.0%
CGTTCAGGAACAGTTAAGGT+AGG - chr5.2:1696634-1696653 MS.gene21778:CDS 45.0%
CTGTTCAATCCTGCAAGCTT+TGG + chr5.2:1695272-1695291 None:intergenic 45.0%
CTTGCAGGATTGAACAGATG+TGG - chr5.2:1695275-1695294 MS.gene21778:intron 45.0%
GCTATAGCAACTCATCTTCC+GGG - chr5.2:1696154-1696173 MS.gene21778:CDS 45.0%
GGTGAAACTGAAACCAGCTT+TGG + chr5.2:1696610-1696629 None:intergenic 45.0%
TCAGTTTCACCTCAACGTTC+AGG - chr5.2:1696619-1696638 MS.gene21778:CDS 45.0%
TCCCCAAGTTTCAAAGCTGT+TGG + chr5.2:1696710-1696729 None:intergenic 45.0%
!! ACAAAAATAAATAAATTAAT+AGG - chr5.2:1696042-1696061 MS.gene21778:intron 5.0%
!! TATTATTTAAATAATACAAT+AGG - chr5.2:1697028-1697047 MS.gene21778:intron 5.0%
AGAGCTCTTCCAAAGCTTGC+AGG - chr5.2:1695260-1695279 MS.gene21778:intron 50.0%
GGTTAGATCCAGTGACACAC+AGG - chr5.2:1696242-1696261 MS.gene21778:CDS 50.0%
TAGCAACTCATCTTCCGGGA+AGG - chr5.2:1696158-1696177 MS.gene21778:CDS 50.0%
CGGAGAGACGGACATGTTAC+TGG - chr5.2:1697145-1697164 MS.gene21778:intron 55.0%
GTGGCTTGAAGAAGGGTCCA+TGG - chr5.2:1695177-1695196 MS.gene21778:intron 55.0%
GTTCTTGGCCTGTGTGTCAC+TGG + chr5.2:1696253-1696272 None:intergenic 55.0%
CGAGCGTGGGTTCGAACACG+TGG - chr5.2:1695967-1695986 MS.gene21778:intron 65.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 1695149 1697766 1695149 ID=MS.gene21778
chr5.2 mRNA 1695149 1697766 1695149 ID=MS.gene21778.t1;Parent=MS.gene21778
chr5.2 exon 1697504 1697766 1697504 ID=MS.gene21778.t1.exon1;Parent=MS.gene21778.t1
chr5.2 CDS 1697504 1697766 1697504 ID=cds.MS.gene21778.t1;Parent=MS.gene21778.t1
chr5.2 exon 1696136 1696768 1696136 ID=MS.gene21778.t1.exon2;Parent=MS.gene21778.t1
chr5.2 CDS 1696136 1696768 1696136 ID=cds.MS.gene21778.t1;Parent=MS.gene21778.t1
chr5.2 exon 1695149 1695173 1695149 ID=MS.gene21778.t1.exon3;Parent=MS.gene21778.t1
chr5.2 CDS 1695149 1695173 1695149 ID=cds.MS.gene21778.t1;Parent=MS.gene21778.t1
Gene Sequence

>MS.gene21778

ATGATGAGAACACCAAGCAATGATGAAAGTGGCTTGAAGAAGGGTCCATGGAGTCCAGAAGAAGATAAAATATTAGTGGATCACATTCAGAAACATGGTCATGGAAGTTGGAGAGCTCTTCCAAAGCTTGCAGGATTGAACAGATGTGGAAAGAGTTGTAGACTAAGATGGAACAATTATCTAAGGCCTGATATTAGAAGAGGAAAATTCTCTGATGAAGAAGAAAATCTCATCATCAATTTACATTCAGTTCTTGGAAATAAGTAAGCTTCATCATTATTTCTTTGATTCATGGTTTGTTTGTTATAAATTATAAAAGAAATATTTTTTATATTTCAATAATTTAGAGATTTTTTTCCTCAAAAAAAAAAATAATTCAGAGAATTTGTATTTTTTTTTAAAAAGCATAAGTTGTCTTAGCTTTGTTTACCACAATTAAAACTATTTTTTTTTTAAATATTCAGCTATAAATAAGGGTTTTTAGATTTTCAAGATTAGCTACTAAAAAAGTTTATCATTTAAAGAAATTTTTTAGATTTTATTCATTCTTTAAAATAATAATTACTTTTGAATGTTCTTATCCGGATTATTAAAGAAATATGAAGAAAAAATGCTTCAATCAAGAAGCTGCTTTGAGTAGCTTATTTTAAAGTTATTTTTATTAACTTTTTTTATTTGAAAAGTGATTTTCATTACCGTAAATATACACTAAATTACTTCAATTTTTTAAAAACTTTATAAAATTAATATGTAAATTATTGAATGTCAATTTTTTTATTTTATAATATGCAATAACAAATGGATACTAAAACTATGTTCGAGCGTGGGTTCGAACACGTGGTTTTCCACTTCTTCACACTTAAAATGTGTGATTCTCGCCACTAAATTATTTGACAAAAATAAATAAATTAATAGGTCTTATATATAGTATTTAGTTAATTATGAAAATGAAGTTGTATGTATCATGATTGTGAATATGAATATGGTTGATTTATTAGGTGGGCAGCTATAGCAACTCATCTTCCGGGAAGGACTGATAATGAAATAAAGAATTTTTGGAACACACATTTGAAGAAAAAGCTAATGCAAATGGGGTTAGATCCAGTGACACACAGGCCAAGAACAGATCACCTAGACCTTCTTAGTAATCTACAACAAATAATATTGAATGCTGCAAACATTGTCACCAGTTGTGACATAAATAATAATGCTCTAAGGCTACAATATTCACTTCTCCCACAAAGTTTGGTAAATGATGTTTTGGGATTTAATAATAACATACAAAGTTTTTATGATGGTTCCAATATTGGTATTTCTTCTCAAACAATTCAGCCTAATTTGCAAAACTTCGAAGCCCCTCTTCAGCAATTACTACCACAAGAATTTGAGTGCTCTCAGAAATTTGGTGAACAAATTGGTAACACAAATTTTGCTTCAACAATATCATCAAATTCACTTCCAAAGCTGGTTTCAGTTTCACCTCAACGTTCAGGAACAGTTAAGGTAGGAGAAGAAAACATGATGATAGATGCAAAAGAGTGTTGTAACACTTCTTCTTCCAACAGCTTTGAAACTTGGGGAGATTTCATAAATGATGATGCAAATGATGCTTATTGGAAAGATTTCATAGAGTAAGTATATTTGCATGCATTTTCTAACTCCACTTGTTTCTAACATGGTTTTTCATAGTATATATTGAAATTTAATTATTATTTCATTTGTCTTTTATTATAAACATCATTTGACACTCACAAACGAGAATTTTATGAAAAAGAGGGTTGAGTATATTTTCTAAACTAATATATAAAGTGGATACACATTTTTTTGCTGAATTTTTTCTTATTTACTATTCATTTAAACTATTTTATCATTTTTAATATATTATTTAAATAATACAATAGGAACAATATTAGAGACTATAAAAAAAACGTATTTTAATGTTAATTTTCAAAAATAATTTATTCTCTTTTTATATAAAATTAAGTGTAACAAAAAGCGGAGAGACGGACATGTTACTGGTGATAATGTAAGAAAGAAAGATAACTACTTCATATGTTAGTGTGTGTGTGTGTGTCTATATATATATATATATATATATATATATATATATTCATTACTAATATAATTATTAGGTTCACTTTAATCAATTTATTATATTATTTCTTTATAAAAAAAAAATATATAGACATTTAATAATCGTATTAGTCTCACTTTAATAATAATTTATCATTCTATTTCTTCATGAAGAAAGTAATTTATTATATTATTTTTAAAAACATATATCTCAATAAATGTCTACAAACACATATATGAGTAGATGATTAAACTCTTCTATGTTCAAAGTAAATTACCAGTAATTAAACTCTTTATATGTATAGTCAATCATATTTCATCATATTGTTTTGTCAATACACTAATTAAAATTGTTTACACATGATAAAAGACACTAAAATATGATTGGCTTAATTTTCATGTTAAACTTGTTTATAATTAATAATAAACTACTATTAAACTCTATTTTTTTTATTATCACAAACTCTATATTATTTGAAGCATGTTATACTCATTTTTATTTCTTTTTATTTATTTGTAGACAACAATATTCAAGCCAGCCATAG
Protein sequence

>MS.gene21778.t1

MMRTPSNDESGLKKGPWSPEEDKILVDHIQKHGHGSWRALPKLAGLNRCGKSCRLRWNNYLRPDIRRGKFSDEEENLIINLHSVLGNKWAAIATHLPGRTDNEIKNFWNTHLKKKLMQMGLDPVTHRPRTDHLDLLSNLQQIILNAANIVTSCDINNNALRLQYSLLPQSLVNDVLGFNNNIQSFYDGSNIGISSQTIQPNLQNFEAPLQQLLPQEFECSQKFGEQIGNTNFASTISSNSLPKLVSVSPQRSGTVKVGEENMMIDAKECCNTSSSNSFETWGDFINDDANDAYWKDFIEQQYSSQP