AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene055858

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055858.t1 MTR_2g090060 88.125 320 37 1 1 319 1 320 0.0 565
MS.gene055858.t1 MTR_2g090060 90.033 301 30 0 19 319 1 301 0.0 556
MS.gene055858.t1 MTR_2g090070 75.329 304 41 2 16 319 3 272 1.87e-159 446
MS.gene055858.t1 MTR_2g090055 48.161 299 153 2 18 315 4 301 6.68e-101 299
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055858.t1 AT2G20830 47.973 296 148 2 19 313 5 295 4.30e-95 284
MS.gene055858.t1 AT2G20830 47.973 296 148 2 19 313 5 295 4.30e-95 284
MS.gene055858.t1 AT2G20830 47.973 296 148 2 19 313 10 300 7.10e-95 283
MS.gene055858.t1 AT2G20830 47.973 296 148 2 19 313 79 369 4.08e-94 284
MS.gene055858.t1 AT2G20830 47.973 296 148 2 19 313 49 339 4.93e-94 283
MS.gene055858.t1 AT2G20830 47.973 296 148 2 19 313 139 429 5.22e-93 283

Find 99 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTGTTCTACTATCATTTC+TGG 0.103679 2.1:+11376439 None:intergenic
AGCTGATAGGGTACAGAATT+TGG 0.224379 2.1:-11376524 MS.gene055858:CDS
CATTGGTTTCCCATGGAATT+AGG 0.267183 2.1:+11376820 None:intergenic
TATTGCATCGAGTTGTTTCC+CGG 0.281982 2.1:+11376867 None:intergenic
CCGATGTATCCGCAGCAAAA+AGG 0.306320 2.1:-11376663 MS.gene055858:CDS
CCCGCTTGCTCGTGCATCAT+TGG 0.309179 2.1:-11377540 MS.gene055858:CDS
CAATGATTGGTGCGCAGTCT+TGG 0.317728 2.1:-11376717 MS.gene055858:CDS
TGTCATCAACTGCGCCTAAT+CGG 0.317895 2.1:+11377573 None:intergenic
CAACAACATGCAAGCTATTT+CGG 0.318969 2.1:+11376564 None:intergenic
CATCGAGTTGTTTCCCGGTT+GGG 0.339029 2.1:+11376872 None:intergenic
TGGCCAGCACAGTTTGTTGC+AGG 0.339279 2.1:+11377651 None:intergenic
GAAGGGTTGGATGTAGAAAA+AGG 0.343490 2.1:-11376481 MS.gene055858:CDS
CGAAATAGCTTGCATGTTGT+TGG 0.358852 2.1:-11376563 MS.gene055858:CDS
GTCATCAACTGCGCCTAATC+GGG 0.359429 2.1:+11377574 None:intergenic
GGAAACAACTCGATGCAATA+AGG 0.370159 2.1:-11376864 MS.gene055858:CDS
TTCATGATAGAACTTACAAC+AGG 0.385878 2.1:-11377736 MS.gene055858:CDS
TATGCTGCTGCACACCCAAC+CGG 0.386359 2.1:-11376886 MS.gene055858:CDS
AAGGTTAGTGCTCGTGGTGG+TGG 0.387252 2.1:-11376631 MS.gene055858:CDS
AATGATTGGTGCGCAGTCTT+GGG 0.387842 2.1:-11376716 MS.gene055858:CDS
GCATGTTGTTGGAGCCTAAT+CGG 0.396176 2.1:-11376552 MS.gene055858:CDS
TTTATGACTTACCGTTGAAT+TGG 0.402322 2.1:+11377471 None:intergenic
TTGGATCTTGAAACAACAAT+AGG 0.402626 2.1:+11376748 None:intergenic
GGCCCTTCGTCTGGTGTTTG+AGG 0.410177 2.1:+11376769 None:intergenic
ATCATGAAATTCAAGGTTGA+TGG 0.424233 2.1:+11377607 None:intergenic
CTTCCTACGGTGCAAACGCT+CGG 0.433998 2.1:-11376607 MS.gene055858:CDS
CTAATCGGATTGGAGCTGAT+AGG 0.446389 2.1:-11376537 MS.gene055858:CDS
ACCAATCATTGAGATGCCTT+TGG 0.451697 2.1:+11376729 None:intergenic
GCATCGAGTTGTTTCCCGGT+TGG 0.454451 2.1:+11376871 None:intergenic
GGCGAGAGCTCGGATATTAC+CGG 0.455834 2.1:-11376843 MS.gene055858:CDS
CCCTGCCCATTGGTTTCCCA+TGG 0.455960 2.1:+11376813 None:intergenic
TCCAAAGGCATCTCAATGAT+TGG 0.473239 2.1:-11376730 MS.gene055858:CDS
TCCATGGGAAACCAATGGGC+AGG 0.482751 2.1:-11376814 MS.gene055858:CDS
TCCAATGATGCACGAGCAAG+CGG 0.483745 2.1:+11377539 None:intergenic
ACAGAATTTGGTTGAGATGT+TGG 0.486279 2.1:-11376512 MS.gene055858:CDS
GGTGTTTGAGGTAGGATATC+CGG 0.488839 2.1:+11376781 None:intergenic
TTCCTACGGTGCAAACGCTC+GGG 0.494117 2.1:-11376606 MS.gene055858:CDS
TCCCCTGCAACAAACTGTGC+TGG 0.497866 2.1:-11377654 MS.gene055858:CDS
CTTCGTCTGGTGTTTGAGGT+AGG 0.503691 2.1:+11376773 None:intergenic
AGGTTAGTGCTCGTGGTGGT+GGG 0.507995 2.1:-11376630 MS.gene055858:CDS
CTATCAGCTCCAATCCGATT+AGG 0.509620 2.1:+11376538 None:intergenic
AACTGTGCTGGCCATGGCTG+AGG 0.510022 2.1:-11377642 MS.gene055858:CDS
AACGCTCGGGATTGTTTGTG+AGG 0.511506 2.1:-11376593 MS.gene055858:CDS
TGCAAATTCTTTATCTCGGA+AGG 0.511599 2.1:-11377833 MS.gene055858:CDS
TAATTCCATGGGAAACCAAT+GGG 0.512105 2.1:-11376818 MS.gene055858:CDS
GCATAGTCCACCCTGCCCAT+TGG 0.512170 2.1:+11376803 None:intergenic
GCAACAAACTGTGCTGGCCA+TGG 0.513171 2.1:-11377648 MS.gene055858:CDS
GTGCTGCAAATTCTTTATCT+CGG 0.513575 2.1:-11377837 MS.gene055858:CDS
TAATCGGATTGGAGCTGATA+GGG 0.522915 2.1:-11376536 MS.gene055858:CDS
AAATCTGTGGCGGCAGACAT+TGG 0.522952 2.1:-11377497 MS.gene055858:CDS
TGTGTAGGAGCAAAAGAAAA+CGG 0.522996 2.1:-11377879 MS.gene055858:intron
ATGGGCAGGGTGGACTATGC+CGG 0.527471 2.1:-11376800 MS.gene055858:CDS
ATATTACCGGCCTAATTCCA+TGG 0.528538 2.1:-11376830 MS.gene055858:CDS
GCAGCAGCATAAAGAAATAC+AGG 0.532391 2.1:+11376898 None:intergenic
ATTGGACGATGCAGCATGGT+TGG 0.534872 2.1:-11377522 MS.gene055858:CDS
GTTGGCAGCACAAGAAGGGT+TGG 0.536056 2.1:-11376494 MS.gene055858:CDS
ATTGTTGTTTCAAGATCCAA+AGG 0.539231 2.1:-11376745 MS.gene055858:CDS
ATCAACCTTGAATTTCATGA+TGG 0.540710 2.1:-11377605 MS.gene055858:CDS
ACAACAATAGGCCCTTCGTC+TGG 0.543456 2.1:+11376760 None:intergenic
GAGCTCCATCATGAAATTCA+AGG 0.546460 2.1:+11377600 None:intergenic
TCGTGGTGGTGGGCTTCCTA+CGG 0.546757 2.1:-11376620 MS.gene055858:CDS
ATTGAATGCAGCCTCAGCCA+TGG 0.549232 2.1:+11377631 None:intergenic
GATGCAATAAGGCGAGAGCT+CGG 0.550453 2.1:-11376853 MS.gene055858:CDS
GCCAGCACAGTTTGTTGCAG+GGG 0.550960 2.1:+11377653 None:intergenic
GAGATGTTGGCAGCACAAGA+AGG 0.551226 2.1:-11376499 MS.gene055858:CDS
ATGCTGCTGCACACCCAACC+GGG 0.557033 2.1:-11376885 MS.gene055858:CDS
TTGTTGGAGCCTAATCGGAT+TGG 0.563287 2.1:-11376547 MS.gene055858:CDS
ATGAAATTTGTGCACAACGA+CGG 0.563740 2.1:+11377754 None:intergenic
GAATTTGCAGCACAGTAACA+TGG 0.568317 2.1:+11377847 None:intergenic
GGCCAGCACAGTTTGTTGCA+GGG 0.569723 2.1:+11377652 None:intergenic
TTTCAATTATACTACTACCA+AGG 0.571531 2.1:-11379048 MS.gene055858:intron
CCATGGGAAACCAATGGGCA+GGG 0.572451 2.1:-11376813 MS.gene055858:CDS
GGTTTCCCATGGAATTAGGC+CGG 0.574402 2.1:+11376824 None:intergenic
AGATGTTGGCAGCACAAGAA+GGG 0.575813 2.1:-11376498 MS.gene055858:CDS
TCATCAACTGCGCCTAATCG+GGG 0.576416 2.1:+11377575 None:intergenic
TGCAGCACAGTAACATGGAA+TGG 0.580589 2.1:+11377852 None:intergenic
ACGCTCGGGATTGTTTGTGA+GGG 0.590603 2.1:-11376592 MS.gene055858:CDS
GCAAGGAAGGTTAGTGCTCG+TGG 0.595946 2.1:-11376637 MS.gene055858:CDS
GACATTGGCAACCAATTCAA+CGG 0.596060 2.1:-11377482 MS.gene055858:intron
CTAATTCCATGGGAAACCAA+TGG 0.597238 2.1:-11376819 MS.gene055858:CDS
ATCCCGAGCGTTTGCACCGT+AGG 0.598614 2.1:+11376604 None:intergenic
TATGTCTTACACGACTGCAC+AGG 0.604949 2.1:-11377692 MS.gene055858:CDS
TACCTCAAACACCAGACGAA+GGG 0.610564 2.1:-11376771 MS.gene055858:CDS
CCAATGATGCACGAGCAAGC+GGG 0.612169 2.1:+11377540 None:intergenic
TATTACCGGCCTAATTCCAT+GGG 0.614607 2.1:-11376829 MS.gene055858:CDS
ATAGAACTTACAACAGGGCA+AGG 0.622845 2.1:-11377730 MS.gene055858:CDS
AGTAGTATAATTGAAAGCCA+TGG 0.625486 2.1:+11379055 None:intergenic
CAACATGCAAGCTATTTCGG+TGG 0.629570 2.1:+11376567 None:intergenic
TGGGAAACCAATGGGCAGGG+TGG 0.632639 2.1:-11376810 MS.gene055858:CDS
CATCAACTGCGCCTAATCGG+GGG 0.637145 2.1:+11377576 None:intergenic
ATGATGCACGAGCAAGCGGG+TGG 0.637664 2.1:+11377543 None:intergenic
CTACCTCAAACACCAGACGA+AGG 0.652148 2.1:-11376772 MS.gene055858:CDS
ATGGTTGGCAAAATCTGTGG+CGG 0.659658 2.1:-11377507 MS.gene055858:CDS
CATCATTGGACGATGCAGCA+TGG 0.669022 2.1:-11377526 MS.gene055858:CDS
CGTGTAAGACATACGATACG+AGG 0.679014 2.1:+11377702 None:intergenic
GATACATCGGTCGATATGAG+TGG 0.689751 2.1:+11376676 None:intergenic
AGCATGGTTGGCAAAATCTG+TGG 0.701385 2.1:-11377510 MS.gene055858:CDS
TCATGATAGAACTTACAACA+GGG 0.711276 2.1:-11377735 MS.gene055858:CDS
ATGCAGTTGAACGAGCAGCG+AGG 0.724397 2.1:-11377790 MS.gene055858:CDS
AGGAAGGTTAGTGCTCGTGG+TGG 0.751628 2.1:-11376634 MS.gene055858:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATATATAATA+TGG + chr2.1:11376492-11376511 None:intergenic 0.0%
!! TATAATGATAAAACTTTAAT+TGG - chr2.1:11376838-11376857 MS.gene055858:CDS 10.0%
!!! TTTTATCATTATATTCTTAA+CGG + chr2.1:11376831-11376850 None:intergenic 10.0%
!! TTAACAAATTGATGAATTAT+AGG + chr2.1:11378266-11378285 None:intergenic 15.0%
!! TTTATCATTATATTCTTAAC+GGG + chr2.1:11376830-11376849 None:intergenic 15.0%
!! ATATTCACAATTCTAGATTA+AGG - chr2.1:11378198-11378217 MS.gene055858:intron 20.0%
!! ATTATAGGTCTATTAATTGT+TGG + chr2.1:11378251-11378270 None:intergenic 20.0%
!! ATTGTTGAAAAGAATAGAAA+TGG + chr2.1:11376960-11376979 None:intergenic 20.0%
!! GTGTCAACAAAAAAAAAAAT+AGG + chr2.1:11378500-11378519 None:intergenic 20.0%
!! TTTAATATAATGCTTATGCA+GGG + chr2.1:11377426-11377445 None:intergenic 20.0%
!!! AGAAAAAGATTTAGAATCAA+TGG + chr2.1:11376909-11376928 None:intergenic 20.0%
!!! CAAGTATTGTTTAAAATGTT+TGG - chr2.1:11378121-11378140 MS.gene055858:intron 20.0%
!!! TATTTTCTTAAGCAAAAGAA+AGG + chr2.1:11378387-11378406 None:intergenic 20.0%
!!! TCACAACATCTATTTTATTT+TGG - chr2.1:11377326-11377345 MS.gene055858:intron 20.0%
!!! TCATAAAGAACTTTAATTTG+TGG - chr2.1:11378000-11378019 MS.gene055858:intron 20.0%
!!! TGATACTATTTTGTTACTTA+TGG - chr2.1:11376514-11376533 MS.gene055858:CDS 20.0%
!!! TTGTTTAAAATGTTTGGTTA+TGG - chr2.1:11378127-11378146 MS.gene055858:intron 20.0%
! ACAAACAATAACAAGAAAGA+AGG + chr2.1:11376607-11376626 None:intergenic 25.0%
! ACATACTTTAGTTAAGAAAG+TGG + chr2.1:11376576-11376595 None:intergenic 25.0%
! ATGAAACATTATCAATTGAG+AGG + chr2.1:11377252-11377271 None:intergenic 25.0%
! CCAAAAATAAATAGATGTTG+TGG + chr2.1:11377304-11377323 None:intergenic 25.0%
! CTTTAATATAATGCTTATGC+AGG + chr2.1:11377427-11377446 None:intergenic 25.0%
! GACATAAAATTTATGCTAGT+AGG + chr2.1:11378080-11378099 None:intergenic 25.0%
! GCATTATATTAAAGCAACTT+AGG - chr2.1:11377433-11377452 MS.gene055858:intron 25.0%
! GTTAAGAATGGAAAATACTT+GGG - chr2.1:11376652-11376671 MS.gene055858:CDS 25.0%
! TATTGTTCTACTATCATTTC+TGG + chr2.1:11379019-11379038 None:intergenic 25.0%
! TGATAATAATAGCTATTGAC+AGG - chr2.1:11377186-11377205 MS.gene055858:intron 25.0%
! TTTCAATTATACTACTACCA+AGG - chr2.1:11376407-11376426 MS.gene055858:CDS 25.0%
!! CTTTTTAACCTATTTGTCAA+GGG - chr2.1:11377274-11377293 MS.gene055858:intron 25.0%
!! TATTCAAGTAGTTTTTCTAG+AGG + chr2.1:11377081-11377100 None:intergenic 25.0%
!! TCTTTTTAACCTATTTGTCA+AGG - chr2.1:11377273-11377292 MS.gene055858:intron 25.0%
!!! ATGATTTTTTAGCAGAGATT+AGG + chr2.1:11379048-11379067 None:intergenic 25.0%
!!! CCACAACATCTATTTATTTT+TGG - chr2.1:11377301-11377320 MS.gene055858:intron 25.0%
AAACTTGAAGAAAAACTTGC+AGG + chr2.1:11376986-11377005 None:intergenic 30.0%
AACACTTATACAACTGTTCA+TGG - chr2.1:11377468-11377487 MS.gene055858:intron 30.0%
ATCAACCTTGAATTTCATGA+TGG - chr2.1:11377850-11377869 MS.gene055858:CDS 30.0%
ATCATGAAATTCAAGGTTGA+TGG + chr2.1:11377851-11377870 None:intergenic 30.0%
CACTATCTTACTATTTGTGT+AGG - chr2.1:11377561-11377580 MS.gene055858:CDS 30.0%
CATATGTGCAACACAAATAA+TGG + chr2.1:11378045-11378064 None:intergenic 30.0%
GGTTAAGAATGGAAAATACT+TGG - chr2.1:11376651-11376670 MS.gene055858:CDS 30.0%
TAAACAATACTTGAACCACT+CGG + chr2.1:11378114-11378133 None:intergenic 30.0%
TATGATACTGTTGATGTTTC+AGG - chr2.1:11376630-11376649 MS.gene055858:CDS 30.0%
TATTTGTGTTGCACATATGT+AGG - chr2.1:11378046-11378065 MS.gene055858:intron 30.0%
TCATGATAGAACTTACAACA+GGG - chr2.1:11377720-11377739 MS.gene055858:CDS 30.0%
TTCATGATAGAACTTACAAC+AGG - chr2.1:11377719-11377738 MS.gene055858:CDS 30.0%
TTGGATCTTGAAACAACAAT+AGG + chr2.1:11378710-11378729 None:intergenic 30.0%
TTTATGACTTACCGTTGAAT+TGG + chr2.1:11377987-11378006 None:intergenic 30.0%
!! ATTGTTGTTTCAAGATCCAA+AGG - chr2.1:11378710-11378729 MS.gene055858:intron 30.0%
!! TTGATGTTTCAGGTTAAGAA+TGG - chr2.1:11376640-11376659 MS.gene055858:CDS 30.0%
ACAGAATTTGGTTGAGATGT+TGG - chr2.1:11378943-11378962 MS.gene055858:intron 35.0%
AGAAAAGAGATTTCTGACCT+TGG + chr2.1:11376427-11376446 None:intergenic 35.0%
ATGAAATTTGTGCACAACGA+CGG + chr2.1:11377704-11377723 None:intergenic 35.0%
CAACAACATGCAAGCTATTT+CGG + chr2.1:11378894-11378913 None:intergenic 35.0%
CAATCCTAATCTCTGTATCA+AGG + chr2.1:11378163-11378182 None:intergenic 35.0%
GTGCTGCAAATTCTTTATCT+CGG - chr2.1:11377618-11377637 MS.gene055858:CDS 35.0%
TAATTCCATGGGAAACCAAT+GGG - chr2.1:11378637-11378656 MS.gene055858:intron 35.0%
TGCAAATTCTTTATCTCGGA+AGG - chr2.1:11377622-11377641 MS.gene055858:CDS 35.0%
TGTGTAGGAGCAAAAGAAAA+CGG - chr2.1:11377576-11377595 MS.gene055858:CDS 35.0%
!!! CTAACACGTGTGACTTTTTT+AGG + chr2.1:11377108-11377127 None:intergenic 35.0%
ACCAATCATTGAGATGCCTT+TGG + chr2.1:11378729-11378748 None:intergenic 40.0%
AGCAAAAAGGATTGCAAGGA+AGG - chr2.1:11378805-11378824 MS.gene055858:intron 40.0%
AGCTGATAGGGTACAGAATT+TGG - chr2.1:11378931-11378950 MS.gene055858:intron 40.0%
AGGCAACAAATTGTAGGACA+AGG + chr2.1:11378354-11378373 None:intergenic 40.0%
ATACATTGCCACACAACATC+TGG + chr2.1:11376755-11376774 None:intergenic 40.0%
ATAGAACTTACAACAGGGCA+AGG - chr2.1:11377725-11377744 MS.gene055858:CDS 40.0%
ATATTACCGGCCTAATTCCA+TGG - chr2.1:11378625-11378644 MS.gene055858:intron 40.0%
ATTAAATCTGGGCCACACAA+AGG - chr2.1:11376695-11376714 MS.gene055858:CDS 40.0%
CGGATTATTGTTAGAGTGTG+GGG - chr2.1:11378309-11378328 MS.gene055858:intron 40.0%
CTAATTCCATGGGAAACCAA+TGG - chr2.1:11378636-11378655 MS.gene055858:intron 40.0%
GAAGGGTTGGATGTAGAAAA+AGG - chr2.1:11378974-11378993 MS.gene055858:intron 40.0%
GAATTTGCAGCACAGTAACA+TGG + chr2.1:11377611-11377630 None:intergenic 40.0%
GACATTGGCAACCAATTCAA+CGG - chr2.1:11377973-11377992 MS.gene055858:intron 40.0%
GAGACCTTGATACAGAGATT+AGG - chr2.1:11378156-11378175 MS.gene055858:intron 40.0%
GAGCTCCATCATGAAATTCA+AGG + chr2.1:11377858-11377877 None:intergenic 40.0%
GCAGCAGCATAAAGAAATAC+AGG + chr2.1:11378560-11378579 None:intergenic 40.0%
GGAAACAACTCGATGCAATA+AGG - chr2.1:11378591-11378610 MS.gene055858:intron 40.0%
GTCACACGTGTTAGAAATTG+TGG - chr2.1:11377114-11377133 MS.gene055858:intron 40.0%
GTCACCGTGACATTAAATCT+GGG - chr2.1:11376684-11376703 MS.gene055858:CDS 40.0%
GTCACCGTGACATTAAATCT+GGG + chr2.1:11376703-11376684 None:intergenic 40.0%
TACATTGCCACACAACATCT+GGG + chr2.1:11376754-11376773 None:intergenic 40.0%
TATTACCGGCCTAATTCCAT+GGG - chr2.1:11378626-11378645 MS.gene055858:intron 40.0%
TCATCTCATCTAAGTGCTCT+TGG + chr2.1:11377373-11377392 None:intergenic 40.0%
TGTCACCGTGACATTAAATC+TGG - chr2.1:11376683-11376702 MS.gene055858:CDS 40.0%
TGTCACCGTGACATTAAATC+TGG + chr2.1:11376702-11376683 None:intergenic 40.0%
TTGTGTTGCACATATGTAGG+TGG - chr2.1:11378049-11378068 MS.gene055858:intron 40.0%
! AAAAGAAAGGTATGCAGAGG+AGG + chr2.1:11378374-11378393 None:intergenic 40.0%
! AGCAAAAGAAAGGTATGCAG+AGG + chr2.1:11378377-11378396 None:intergenic 40.0%
! CGAAATAGCTTGCATGTTGT+TGG - chr2.1:11378892-11378911 MS.gene055858:intron 40.0%
! GCGGATTATTGTTAGAGTGT+GGG - chr2.1:11378308-11378327 MS.gene055858:intron 40.0%
! TAATCGGATTGGAGCTGATA+GGG - chr2.1:11378919-11378938 MS.gene055858:intron 40.0%
! TATTGCATCGAGTTGTTTCC+CGG + chr2.1:11378591-11378610 None:intergenic 40.0%
!! ATTCTTAACGGGAAGCACTT+GGG + chr2.1:11376819-11376838 None:intergenic 40.0%
!! CATTGGTTTCCCATGGAATT+AGG + chr2.1:11378638-11378657 None:intergenic 40.0%
!! TATTCTTAACGGGAAGCACT+TGG + chr2.1:11376820-11376839 None:intergenic 40.0%
!! TCCAAAGGCATCTCAATGAT+TGG - chr2.1:11378725-11378744 MS.gene055858:intron 40.0%
AATGATTGGTGCGCAGTCTT+GGG - chr2.1:11378739-11378758 MS.gene055858:intron 45.0%
ACAGGCATTCACATGGTGTA+GGG - chr2.1:11377204-11377223 MS.gene055858:intron 45.0%
AGATGTTGGCAGCACAAGAA+GGG - chr2.1:11378957-11378976 MS.gene055858:intron 45.0%
AGCATGGTTGGCAAAATCTG+TGG - chr2.1:11377945-11377964 MS.gene055858:intron 45.0%
ATGGTTGGCAAAATCTGTGG+CGG - chr2.1:11377948-11377967 MS.gene055858:intron 45.0%
CACAACACAACACCTTTGTG+TGG + chr2.1:11376710-11376729 None:intergenic 45.0%
CAGAGGAGGCAACAAATTGT+AGG + chr2.1:11378360-11378379 None:intergenic 45.0%
CGTGTAAGACATACGATACG+AGG + chr2.1:11377756-11377775 None:intergenic 45.0%
CTATCAGCTCCAATCCGATT+AGG + chr2.1:11378920-11378939 None:intergenic 45.0%
GATACATCGGTCGATATGAG+TGG + chr2.1:11378782-11378801 None:intergenic 45.0%
GCATGTTGTTGGAGCCTAAT+CGG - chr2.1:11378903-11378922 MS.gene055858:intron 45.0%
GCTATTGACAGGCATTCACA+TGG - chr2.1:11377197-11377216 MS.gene055858:intron 45.0%
GTGGATGTCCCTTGACAAAT+AGG + chr2.1:11377285-11377304 None:intergenic 45.0%
GTGGCCCAGATTTAATGTCA+CGG - chr2.1:11376780-11376799 MS.gene055858:CDS 45.0%
GTGGCCCAGATTTAATGTCA+CGG + chr2.1:11376799-11376780 None:intergenic 45.0%
GTGTAGGGACACTCAAACAA+GGG - chr2.1:11377219-11377238 MS.gene055858:intron 45.0%
GTGTGGCAATGTATGTTGTG+TGG - chr2.1:11376761-11376780 MS.gene055858:CDS 45.0%
TACCTCAAACACCAGACGAA+GGG - chr2.1:11378684-11378703 MS.gene055858:intron 45.0%
TATGTCTTACACGACTGCAC+AGG - chr2.1:11377763-11377782 MS.gene055858:CDS 45.0%
TGCAGCACAGTAACATGGAA+TGG + chr2.1:11377606-11377625 None:intergenic 45.0%
TGTCATCAACTGCGCCTAAT+CGG + chr2.1:11377885-11377904 None:intergenic 45.0%
TTGTTGGAGCCTAATCGGAT+TGG - chr2.1:11378908-11378927 MS.gene055858:intron 45.0%
! CAACATGCAAGCTATTTCGG+TGG + chr2.1:11378891-11378910 None:intergenic 45.0%
! CCTTGCAATCCTTTTTGCTG+CGG + chr2.1:11378804-11378823 None:intergenic 45.0%
! CCTTTTTGCTGCGGATACAT+CGG + chr2.1:11378795-11378814 None:intergenic 45.0%
! CGCGGATTATTGTTAGAGTG+TGG - chr2.1:11378307-11378326 MS.gene055858:intron 45.0%
! CTAATCGGATTGGAGCTGAT+AGG - chr2.1:11378918-11378937 MS.gene055858:intron 45.0%
! GGTGTTTGAGGTAGGATATC+CGG + chr2.1:11378677-11378696 None:intergenic 45.0%
! GTACTCGATTTTGTTACGCG+CGG - chr2.1:11378289-11378308 MS.gene055858:intron 45.0%
!! CACAAAGGTGTTGTGTTGTG+TGG - chr2.1:11376710-11376729 MS.gene055858:CDS 45.0%
AAATCTGTGGCGGCAGACAT+TGG - chr2.1:11377958-11377977 MS.gene055858:intron 50.0%
AACGCTCGGGATTGTTTGTG+AGG - chr2.1:11378862-11378881 MS.gene055858:intron 50.0%
ACAACAATAGGCCCTTCGTC+TGG + chr2.1:11378698-11378717 None:intergenic 50.0%
ACGCTCGGGATTGTTTGTGA+GGG - chr2.1:11378863-11378882 MS.gene055858:intron 50.0%
ATTGAATGCAGCCTCAGCCA+TGG + chr2.1:11377827-11377846 None:intergenic 50.0%
ATTGGACGATGCAGCATGGT+TGG - chr2.1:11377933-11377952 MS.gene055858:intron 50.0%
CAATGATTGGTGCGCAGTCT+TGG - chr2.1:11378738-11378757 MS.gene055858:intron 50.0%
CATCATTGGACGATGCAGCA+TGG - chr2.1:11377929-11377948 MS.gene055858:intron 50.0%
CCGATGTATCCGCAGCAAAA+AGG - chr2.1:11378792-11378811 MS.gene055858:intron 50.0%
CCGCAGCAAAAAGGATTGCA+AGG - chr2.1:11378801-11378820 MS.gene055858:intron 50.0%
CTACCTCAAACACCAGACGA+AGG - chr2.1:11378683-11378702 MS.gene055858:intron 50.0%
GACAGGCATTCACATGGTGT+AGG - chr2.1:11377203-11377222 MS.gene055858:intron 50.0%
GAGATGTTGGCAGCACAAGA+AGG - chr2.1:11378956-11378975 MS.gene055858:intron 50.0%
GATGCAATAAGGCGAGAGCT+CGG - chr2.1:11378602-11378621 MS.gene055858:intron 50.0%
GGTGTAGGGACACTCAAACA+AGG - chr2.1:11377218-11377237 MS.gene055858:intron 50.0%
GGTTTCCCATGGAATTAGGC+CGG + chr2.1:11378634-11378653 None:intergenic 50.0%
GTCATCAACTGCGCCTAATC+GGG + chr2.1:11377884-11377903 None:intergenic 50.0%
TCATCAACTGCGCCTAATCG+GGG + chr2.1:11377883-11377902 None:intergenic 50.0%
TCCAATGATGCACGAGCAAG+CGG + chr2.1:11377919-11377938 None:intergenic 50.0%
TGTCACTCACTAACTCCGAG+TGG - chr2.1:11378096-11378115 MS.gene055858:intron 50.0%
! ACAAGGCGTTACAGCATAGC+TGG + chr2.1:11378337-11378356 None:intergenic 50.0%
! CATCGAGTTGTTTCCCGGTT+GGG + chr2.1:11378586-11378605 None:intergenic 50.0%
! CTTCGTCTGGTGTTTGAGGT+AGG + chr2.1:11378685-11378704 None:intergenic 50.0%
AAGGTTAGTGCTCGTGGTGG+TGG - chr2.1:11378824-11378843 MS.gene055858:intron 55.0%
AGGAAGGTTAGTGCTCGTGG+TGG - chr2.1:11378821-11378840 MS.gene055858:intron 55.0%
AGGTTAGTGCTCGTGGTGGT+GGG - chr2.1:11378825-11378844 MS.gene055858:intron 55.0%
ATGCAGTTGAACGAGCAGCG+AGG - chr2.1:11377665-11377684 MS.gene055858:CDS 55.0%
CATCAACTGCGCCTAATCGG+GGG + chr2.1:11377882-11377901 None:intergenic 55.0%
CCAATGATGCACGAGCAAGC+GGG + chr2.1:11377918-11377937 None:intergenic 55.0%
CCATGGGAAACCAATGGGCA+GGG - chr2.1:11378642-11378661 MS.gene055858:intron 55.0%
CTGGGCCACACAACACATCT+GGG + chr2.1:11376736-11376755 None:intergenic 55.0%
CTTCCTACGGTGCAAACGCT+CGG - chr2.1:11378848-11378867 MS.gene055858:intron 55.0%
GCAAGGAAGGTTAGTGCTCG+TGG - chr2.1:11378818-11378837 MS.gene055858:intron 55.0%
GGCGAGAGCTCGGATATTAC+CGG - chr2.1:11378612-11378631 MS.gene055858:intron 55.0%
GTTGGCAGCACAAGAAGGGT+TGG - chr2.1:11378961-11378980 MS.gene055858:intron 55.0%
TATGCTGCTGCACACCCAAC+CGG - chr2.1:11378569-11378588 MS.gene055858:intron 55.0%
TCCATGGGAAACCAATGGGC+AGG - chr2.1:11378641-11378660 MS.gene055858:intron 55.0%
TCCCCTGCAACAAACTGTGC+TGG - chr2.1:11377801-11377820 MS.gene055858:CDS 55.0%
TCTGGGCCACACAACACATC+TGG + chr2.1:11376737-11376756 None:intergenic 55.0%
TGTGGCCCAGATGTGTTGTG+TGG - chr2.1:11376728-11376747 MS.gene055858:CDS 55.0%
TGTGTGGCCCAGATGTTGTG+TGG - chr2.1:11376744-11376763 MS.gene055858:CDS 55.0%
TTCCTACGGTGCAAACGCTC+GGG - chr2.1:11378849-11378868 MS.gene055858:intron 55.0%
! GCAACAAACTGTGCTGGCCA+TGG - chr2.1:11377807-11377826 MS.gene055858:CDS 55.0%
! GCATCGAGTTGTTTCCCGGT+TGG + chr2.1:11378587-11378606 None:intergenic 55.0%
!! GCCAGCACAGTTTGTTGCAG+GGG + chr2.1:11377805-11377824 None:intergenic 55.0%
!! GGCCAGCACAGTTTGTTGCA+GGG + chr2.1:11377806-11377825 None:intergenic 55.0%
!! TGGCCAGCACAGTTTGTTGC+AGG + chr2.1:11377807-11377826 None:intergenic 55.0%
ATCCCGAGCGTTTGCACCGT+AGG + chr2.1:11378854-11378873 None:intergenic 60.0%
ATGATGCACGAGCAAGCGGG+TGG + chr2.1:11377915-11377934 None:intergenic 60.0%
ATGCTGCTGCACACCCAACC+GGG - chr2.1:11378570-11378589 MS.gene055858:intron 60.0%
CCCGCTTGCTCGTGCATCAT+TGG - chr2.1:11377915-11377934 MS.gene055858:intron 60.0%
GATGGAGCTCACCCCCGATT+AGG - chr2.1:11377868-11377887 MS.gene055858:CDS 60.0%
GCATAGTCCACCCTGCCCAT+TGG + chr2.1:11378655-11378674 None:intergenic 60.0%
GGCCCTTCGTCTGGTGTTTG+AGG + chr2.1:11378689-11378708 None:intergenic 60.0%
TGGGAAACCAATGGGCAGGG+TGG - chr2.1:11378645-11378664 MS.gene055858:intron 60.0%
! AACTGTGCTGGCCATGGCTG+AGG - chr2.1:11377813-11377832 MS.gene055858:CDS 60.0%
!! ATGGGCAGGGTGGACTATGC+CGG - chr2.1:11378655-11378674 MS.gene055858:intron 60.0%
!! CCCTGCCCATTGGTTTCCCA+TGG + chr2.1:11378645-11378664 None:intergenic 60.0%
!! TCGTGGTGGTGGGCTTCCTA+CGG - chr2.1:11378835-11378854 MS.gene055858:intron 60.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 11376402 11379075 11376402 ID=MS.gene055858
chr2.1 mRNA 11376402 11379075 11376402 ID=MS.gene055858.t1;Parent=MS.gene055858
chr2.1 exon 11379049 11379075 11379049 ID=MS.gene055858.t1.exon1;Parent=MS.gene055858.t1
chr2.1 CDS 11379049 11379075 11379049 ID=cds.MS.gene055858.t1;Parent=MS.gene055858.t1
chr2.1 exon 11377483 11377894 11377483 ID=MS.gene055858.t1.exon2;Parent=MS.gene055858.t1
chr2.1 CDS 11377483 11377894 11377483 ID=cds.MS.gene055858.t1;Parent=MS.gene055858.t1
chr2.1 exon 11376402 11376922 11376402 ID=MS.gene055858.t1.exon3;Parent=MS.gene055858.t1
chr2.1 CDS 11376402 11376922 11376402 ID=cds.MS.gene055858.t1;Parent=MS.gene055858.t1
Gene Sequence

>MS.gene055858

ATGGCTTTCAATTATACTACTACCAAGGTCAGAAATCTCTTTTCTTATGTTTTTCTTTCTCTGATTACTGATGTTAACATTATTAGACCATATTATATATATATATATATGATGATACTATTTTGTTACTTATGGTGACAATTTTATTAACTTATTAAACACATATATGTTCCACTTTCTTAACTAAAGTATGTATCTCTATCCTTCTTTCTTGTTATTGTTTGTTTATATGATACTGTTGATGTTTCAGGTTAAGAATGGAAAATACTTGGGTGACATAATGTCACCGTGACATTAAATCTGGGCCACACAAAGGTGTTGTGTTGTGTGGCCCAGATGTGTTGTGTGGCCCAGATGTTGTGTGGCAATGTATGTTGTGTGGCCCAGATTTAATGTCACGGTGACATTATGTCACCCAAGTGCTTCCCGTTAAGAATATAATGATAAAACTTTAATTGGTTCAGTTTGTAGTGTTAAAAGTATAATATAATTGTTGAACTGAAACCATTGATTCTAAATCTTTTTCTTAGAATAAATGAATTAAGTTCAAATTTTCCATTTCTATTCTTTTCAACAATAAACCTGCAAGTTTTTCTTCAAGTTTTTTTTTTTACTTCAATCATGTTCTTGTTTGAATAATGTATATATTTTTTATTTATTTCATATATATATATATCCTCTAGAAAAACTACTTGAATATGTACCTAAAAAAGTCACACGTGTTAGAAATTGTGGATAAGACTAAGTTCTCAATTTTTTGTGTGATACAATTATTATTTTTAAATGATAATAATAGCTATTGACAGGCATTCACATGGTGTAGGGACACTCAAACAAGGGAGTAGATCCTCTCAATTGATAATGTTTCATTTCTTTTTAACCTATTTGTCAAGGGACATCCACAACATCTATTTATTTTTGGTTTCACAACATCTATTTTATTTTGGATAGACAAATGTTATGTATTACCAAGAGCACTTAGATGAGATGACACGAGTCTCTTAAAGTTATTAAATAGATGCCCTGCATAAGCATTATATTAAAGCAACTTAGGAACATATCATCTAACACTTATACAACTGTTCATGGCATCAAATAAGCTATTTCAAACATCTAAATATATGTATTCTCTTATTTCTTCTTCAACAGAACAATATTTCACTATCTTACTATTTGTGTAGGAGCAAAAGAAAACGGCAGACCATTCCATGTTACTGTGCTGCAAATTCTTTATCTCGGAAGGACGCAACATTGCTACTCTTGATGCAGTTGAACGAGCAGCGAGGTCGAACTCAGAAACCGTCGTTGTGCACAAATTTCATGATAGAACTTACAACAGGGCAAGGTACAACCTCGTATCGTATGTCTTACACGACTGCACAGGAAATGCAATATACAGTCCCCTGCAACAAACTGTGCTGGCCATGGCTGAGGCTGCATTCAATGCCATCAACCTTGAATTTCATGATGGAGCTCACCCCCGATTAGGCGCAGTTGATGACATTGTTTTCCACCCGCTTGCTCGTGCATCATTGGACGATGCAGCATGGTTGGCAAAATCTGTGGCGGCAGACATTGGCAACCAATTCAACGGTAAGTCATAAAGAACTTTAATTTGTGGAATGTTGTACATTGATGCACCATTATTTGTGTTGCACATATGTAGGTGGTTTTTCCTACTAGCATAAATTTTATGTCACTCACTAACTCCGAGTGGTTCAAGTATTGTTTAAAATGTTTGGTTATGGACAGATGAGACCTTGATACAGAGATTAGGATTGCTACTGTGTAACTAAATATTCACAATTCTAGATTAAGGAATTAACTTCTAACAAATATAAGACTGCCAACAATTAATAGACCTATAATTCATCAATTTGTTAAAATGTACTCGATTTTGTTACGCGCGGATTATTGTTAGAGTGTGGGGTGCCAGCTATGCTGTAACGCCTTGTCCTACAATTTGTTGCCTCCTCTGCATACCTTTCTTTTGCTTAAGAAAATATTAAAATTTCATTTTAGAACAATCAAATCGAACAATTTAAGAACATCATAATATCATAGCATTAATCGACGTATTGCAAGATAATTTAATCCTATTTTTTTTTTTGTTGACACTTACACTGCATTTTTTGTTATATATGAAAATGCAGTACCTGTATTTCTTTATGCTGCTGCACACCCAACCGGGAAACAACTCGATGCAATAAGGCGAGAGCTCGGATATTACCGGCCTAATTCCATGGGAAACCAATGGGCAGGGTGGACTATGCCGGATATCCTACCTCAAACACCAGACGAAGGGCCTATTGTTGTTTCAAGATCCAAAGGCATCTCAATGATTGGTGCGCAGTCTTGGGTCACGCTCTACAACGTACCACTCATATCGACCGATGTATCCGCAGCAAAAAGGATTGCAAGGAAGGTTAGTGCTCGTGGTGGTGGGCTTCCTACGGTGCAAACGCTCGGGATTGTTTGTGAGGGTTCCACCGAAATAGCTTGCATGTTGTTGGAGCCTAATCGGATTGGAGCTGATAGGGTACAGAATTTGGTTGAGATGTTGGCAGCACAAGAAGGGTTGGATGTAGAAAAAGGATACTATACTGACTTATCTCCAGAAATGATAGTAGAACAATACATGAACCTAATCTCTGCTAAAAAATCATCACCATAG
Protein sequence

>MS.gene055858.t1

MAFNYTTTKEQKKTADHSMLLCCKFFISEGRNIATLDAVERAARSNSETVVVHKFHDRTYNRARYNLVSYVLHDCTGNAIYSPLQQTVLAMAEAAFNAINLEFHDGAHPRLGAVDDIVFHPLARASLDDAAWLAKSVAADIGNQFNVPVFLYAAAHPTGKQLDAIRRELGYYRPNSMGNQWAGWTMPDILPQTPDEGPIVVSRSKGISMIGAQSWVTLYNVPLISTDVSAAKRIARKVSARGGGLPTVQTLGIVCEGSTEIACMLLEPNRIGADRVQNLVEMLAAQEGLDVEKGYYTDLSPEMIVEQYMNLISAKKSSP