AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene25726


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene25726.t1 MTR_4g101270 69.412 85 26 0 295 379 103 187 2.27e-33 123
MS.gene25726.t1 MTR_1g012700 46.970 132 55 4 249 379 47 164 5.06e-24 97.4
MS.gene25726.t1 MTR_1g012690 51.613 93 43 2 288 379 63 154 2.34e-23 95.5
MS.gene25726.t1 MTR_1g012630 51.163 86 40 2 295 379 126 210 7.00e-22 93.2
MS.gene25726.t1 MTR_1g012710 55.556 81 34 2 300 379 72 151 1.38e-21 90.5
MS.gene25726.t1 MTR_4g115360 62.222 90 34 0 290 379 144 233 9.16e-19 85.1
MS.gene25726.t1 MTR_4g101330 48.810 84 34 4 300 378 89 168 3.83e-18 81.6
MS.gene25726.t1 MTR_3g106740 49.412 85 34 4 300 379 50 130 2.74e-16 75.1
MS.gene25726.t1 MTR_4g101260 45.882 85 44 2 296 379 49 132 8.89e-16 73.9
MS.gene25726.t1 MTR_2g026760 45.161 93 46 4 287 378 38 126 9.76e-16 73.6
MS.gene25726.t1 MTR_4g101280 47.619 84 37 4 300 379 63 143 9.83e-16 73.9
MS.gene25726.t1 MTR_4g108150 43.689 103 53 3 278 379 25 123 1.38e-15 73.2
MS.gene25726.t1 MTR_4g101310 46.914 81 42 1 300 379 54 134 5.61e-14 68.9
MS.gene25726.t1 MTR_5g012340 39.080 87 51 2 293 378 91 176 1.19e-12 66.2
MS.gene25726.t1 MTR_5g012380 37.778 90 48 3 293 378 84 169 1.80e-12 65.5
MS.gene25726.t1 MTR_3g106750 48.148 81 41 1 300 379 49 129 2.05e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene25726.t1 AT3G22142 45.812 382 136 17 35 380 1134 1480 4.18e-58 204
MS.gene25726.t1 AT4G15160 78.161 87 17 2 295 379 97 183 1.23e-38 137
MS.gene25726.t1 AT2G10940 49.231 260 117 8 125 378 39 289 3.45e-37 136
MS.gene25726.t1 AT2G10940 49.231 260 117 8 125 378 39 289 3.45e-37 136
MS.gene25726.t1 AT1G62500 72.619 84 23 0 296 379 211 294 3.83e-36 134
MS.gene25726.t1 AT4G12490 49.462 93 46 1 288 379 90 182 7.11e-25 100
MS.gene25726.t1 AT4G12470 53.659 82 37 1 299 379 80 161 4.66e-23 94.7
MS.gene25726.t1 AT4G12500 52.439 82 38 1 299 379 96 177 2.20e-22 93.6
MS.gene25726.t1 AT4G12480 53.659 82 37 1 299 379 87 168 2.31e-22 93.2
MS.gene25726.t1 AT1G62510 50.602 83 34 3 300 378 70 149 3.59e-18 81.3
MS.gene25726.t1 AT1G12100 48.235 85 43 1 296 379 48 132 3.63e-18 80.5
MS.gene25726.t1 AT2G45180 49.412 85 41 2 296 379 51 134 2.15e-17 78.6
MS.gene25726.t1 AT4G12520 48.837 86 33 3 300 379 49 129 1.11e-16 76.3
MS.gene25726.t1 AT4G12510 48.837 86 33 3 300 379 49 129 1.11e-16 76.3
MS.gene25726.t1 AT5G46890 45.263 95 43 5 288 379 39 127 1.35e-16 75.9
MS.gene25726.t1 AT5G46900 47.126 87 37 5 296 379 47 127 4.72e-16 74.3
MS.gene25726.t1 AT4G12530 46.591 88 45 2 293 379 30 116 1.16e-15 73.2
MS.gene25726.t1 AT1G12090 45.783 83 38 3 300 378 58 137 1.48e-14 70.5
MS.gene25726.t1 AT4G22460 40.000 115 55 4 272 377 22 131 3.22e-14 69.7
MS.gene25726.t1 AT4G00165 42.718 103 50 4 278 378 33 128 1.12e-13 67.8
MS.gene25726.t1 AT4G00165 42.718 103 50 4 278 378 33 128 1.12e-13 67.8
MS.gene25726.t1 AT4G12550 36.735 98 59 3 284 379 15 111 1.71e-12 63.9

Find 153 sgRNAs with CRISPR-Local

Find 163 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGTGGTGTGTTGGTGGTTT+AGG 0.101165 3.3:-69155385 None:intergenic
GGTGGTGTGTTGGTGGTTTA+GGG 0.179821 3.3:-69155384 None:intergenic
TTGGGATGATGAGGAGGTTT+TGG 0.213303 3.3:-69155547 None:intergenic
ACATGTGGTGGGTGCACTAC+TGG 0.227597 3.3:-69155574 None:intergenic
GTGTTGGTGGTTTAGGGCTT+GGG 0.277482 3.3:-69155378 None:intergenic
TTTGGAACATGTGGTGGTTT+TGG 0.297398 3.3:-69155529 None:intergenic
TGTGTTGGTGGTTTAGGGCT+TGG 0.305036 3.3:-69155379 None:intergenic
GGTTTAACAATTGGTGGTTT+TGG 0.308951 3.3:-69155628 None:intergenic
GGGCTTGGGTAAGGACAATA+AGG 0.310531 3.3:-69155364 None:intergenic
ACAATTGGTGGTTTCACAAT+TGG 0.325867 3.3:-69155952 None:intergenic
GGAACATAAGGTGGTGTTAC+AGG 0.335642 3.3:-69155763 None:intergenic
GGAACATAAGGTGGTGTTAC+AGG 0.335642 3.3:-69155835 None:intergenic
GGTCTCACAACAGGTGGCTT+AGG 0.336071 3.3:-69155712 None:intergenic
GGTGGACAAGGTGATGGTTT+AGG 0.339269 3.3:-69155493 None:intergenic
ACAATTGGTGGTTTCACAAT+TGG 0.349052 3.3:-69155865 None:intergenic
CATGTGGTGGGTGCACTACT+GGG 0.351022 3.3:-69155573 None:intergenic
TGCACATAAGGTGGTGTTAC+AGG 0.351554 3.3:-69156009 None:intergenic
GGCACATAAGGTGGATGTAC+TGG 0.360540 3.3:-69155607 None:intergenic
TGCATATATGATTAATAAGC+TGG 0.363723 3.3:-69156423 None:intergenic
TATGGTGGTGGTTTCACAAC+CGG 0.372564 3.3:-69155685 None:intergenic
GCTTCAAGGACTTGTTGATT+TGG 0.376763 3.3:+69156278 MS.gene25726:CDS
TCCATTGATGCTTTGAAGTT+GGG 0.377397 3.3:+69156180 MS.gene25726:CDS
GGTGTTGGTGGTGTTACAAT+AGG 0.381877 3.3:-69156039 None:intergenic
ACAGGGACAACTGGTGGTTT+AGG 0.382129 3.3:-69155745 None:intergenic
ACAGGGACAACTGGTGGTTT+AGG 0.382129 3.3:-69155817 None:intergenic
GGTTTGTGAACTGGTGGTTT+AGG 0.384230 3.3:-69155457 None:intergenic
GGTTTCACAATTGGTGGCTT+AGG 0.387848 3.3:-69155856 None:intergenic
TGAACTGGTGGCTTAACAAT+AGG 0.393111 3.3:-69155409 None:intergenic
GGTTTCACAATTGGAGGTGT+TGG 0.396026 3.3:-69155943 None:intergenic
GCTGGGCACTTAAACCCTTC+TGG 0.397405 3.3:-69156405 None:intergenic
GGTGGTGTTACAGGCACAAC+TGG 0.421124 3.3:-69156000 None:intergenic
ACTATTGGAGGTTTAACAAT+TGG 0.422358 3.3:-69155637 None:intergenic
TACTTTGGTGGTTTGTGAAC+TGG 0.426515 3.3:-69155424 None:intergenic
ACATGTTGTCCATTGCTTCA+AGG 0.426797 3.3:+69156264 MS.gene25726:CDS
ATAGGTGGTGGTTGCACATA+AGG 0.432534 3.3:-69156021 None:intergenic
CTTCAGGTTCTCATTGATTG+TGG 0.435240 3.3:+69156372 MS.gene25726:CDS
TATCTTGGTGGTTTGTGAAC+TGG 0.440214 3.3:-69155466 None:intergenic
GTTTCACAATTGGAGGTGTT+GGG 0.441037 3.3:-69155942 None:intergenic
TGAACTGGTGGTTTAGGAGT+AGG 0.443038 3.3:-69155451 None:intergenic
GGTGGTTTAGGGCTTGGGTA+AGG 0.443106 3.3:-69155373 None:intergenic
AAGAAGTTTAAGTCTAATAG+TGG 0.443363 3.3:-69156322 None:intergenic
ATGGAACATGTTTGTTGTGC+TGG 0.445283 3.3:-69156162 None:intergenic
TTCCATTGATGCTTTGAAGT+TGG 0.447409 3.3:+69156179 MS.gene25726:CDS
ATTGGAGGTGTTGGGACATA+AGG 0.448232 3.3:-69155934 None:intergenic
ACCACTGGTGGTGTCACAAT+TGG 0.450406 3.3:-69156069 None:intergenic
GCACATAAGGTGGATGTACT+GGG 0.453867 3.3:-69155606 None:intergenic
GTTTGTTGTGCTGGTGGTGT+AGG 0.454264 3.3:-69156153 None:intergenic
GGTCTCACAACAGGTGGCTT+AGG 0.454580 3.3:-69155784 None:intergenic
GGTGGCGGTGATGGTACAAC+TGG 0.464332 3.3:-69155913 None:intergenic
ATGGTGGTGGTTTCACAACC+GGG 0.469584 3.3:-69155684 None:intergenic
ATTGGAGGTGTTGGTGTTGG+TGG 0.473389 3.3:-69156051 None:intergenic
ACGTAAGGTGGATGTACTAT+TGG 0.473876 3.3:-69155652 None:intergenic
GATGGTTTAGGAGGATATCT+TGG 0.475788 3.3:-69155481 None:intergenic
ACATAGGGTGGTCTCACAAC+AGG 0.482961 3.3:-69155721 None:intergenic
ACATAGGGTGGTCTCACAAC+AGG 0.482961 3.3:-69155793 None:intergenic
GGTGGTGTTACAGGGACAAC+TGG 0.483517 3.3:-69155754 None:intergenic
GGTGGTGTTACAGGGACAAC+TGG 0.483517 3.3:-69155826 None:intergenic
GTCTCACAACAGGTGGCTTA+GGG 0.489664 3.3:-69155711 None:intergenic
ATAGGAGGGTGGTGTGTTGG+TGG 0.491865 3.3:-69155391 None:intergenic
ATTGGTGGTTTCACAATTGG+TGG 0.495782 3.3:-69155862 None:intergenic
ATTGGTGGTTTCACAATTGG+AGG 0.496030 3.3:-69155949 None:intergenic
ATTGGAGGTTTAACAATTGG+TGG 0.498001 3.3:-69155634 None:intergenic
TTAGGAGTAGGAGAATACTT+TGG 0.499134 3.3:-69155439 None:intergenic
GGTGCATGTGTTGATGTGCT+TGG 0.500450 3.3:+69156201 MS.gene25726:CDS
ACAGGTGGCTTAGGGACATA+TGG 0.500670 3.3:-69155703 None:intergenic
GCTGGTGGTGTAGGTGGATA+AGG 0.502339 3.3:-69156144 None:intergenic
GGTGTCACAATTGGAGGTGT+TGG 0.504887 3.3:-69156060 None:intergenic
GGTTTAGGAGGATATCTTGG+TGG 0.512387 3.3:-69155478 None:intergenic
GGATAAGGTACAAGTGGTGG+TGG 0.512801 3.3:-69156129 None:intergenic
CTTGGTGGACTCATACATAT+TGG 0.516064 3.3:+69156219 MS.gene25726:CDS
ACATGTGGTGGGAAAACAAT+TGG 0.519270 3.3:-69155880 None:intergenic
ATTGGTGGCTTAGGAACATA+AGG 0.519504 3.3:-69155847 None:intergenic
ACAATTGGAGGTGTTGGTGT+TGG 0.522248 3.3:-69156054 None:intergenic
GGGACATAAGGTGGCGGTGA+TGG 0.523501 3.3:-69155922 None:intergenic
TGTTGTGCTGGTGGTGTAGG+TGG 0.526757 3.3:-69156150 None:intergenic
GGAGTAGGAGAATACTTTGG+TGG 0.529075 3.3:-69155436 None:intergenic
ACAGGTGGCTTAGGAACATA+AGG 0.531513 3.3:-69155775 None:intergenic
GGACAAGGTGATGGTTTAGG+AGG 0.532067 3.3:-69155490 None:intergenic
GGTGTTTCACTAGGTGGTGT+TGG 0.533247 3.3:-69156099 None:intergenic
GGCTTAGGGACATATGGTGG+TGG 0.534071 3.3:-69155697 None:intergenic
GGAGGACATGGTGTTTCACT+AGG 0.536488 3.3:-69156108 None:intergenic
ACAATAGGAGGGTGGTGTGT+TGG 0.537158 3.3:-69155394 None:intergenic
GCATGTGTTGATGTGCTTGG+TGG 0.537915 3.3:+69156204 MS.gene25726:CDS
CTCATACATATTGGTATCGG+TGG 0.543738 3.3:+69156228 MS.gene25726:CDS
GATGGTACAACTGGAGGTAG+TGG 0.546745 3.3:-69155904 None:intergenic
AACTGGTGGTTTAGGTACAT+AGG 0.546797 3.3:-69155737 None:intergenic
AACTGGTGGTTTAGGTACAT+AGG 0.546797 3.3:-69155809 None:intergenic
ATGTGGTGGGTGCACTACTG+GGG 0.548341 3.3:-69155572 None:intergenic
GCAAGCAAGAACATTGAGTA+AGG 0.548467 3.3:-69155341 None:intergenic
GGTGGTGTTACAATAGGTGG+TGG 0.552132 3.3:-69156033 None:intergenic
TAAGGTGGATGTACTATTGG+AGG 0.552788 3.3:-69155649 None:intergenic
ACAGGCACAACTGGAGGTAG+AGG 0.553941 3.3:-69155991 None:intergenic
ACAAGTGGTGGTGGAGGACA+TGG 0.555606 3.3:-69156120 None:intergenic
TAAGGTACAAGTGGTGGTGG+AGG 0.557029 3.3:-69156126 None:intergenic
TCAACAAGTCCTTGAAGCAA+TGG 0.557441 3.3:-69156273 None:intergenic
GGTGTTGGTGGTGTAACCAC+TGG 0.559606 3.3:-69156084 None:intergenic
GGAGGTGTTGGGACATAAGG+TGG 0.568088 3.3:-69155931 None:intergenic
CTTGGTGGTTTGTGAACTGG+TGG 0.569251 3.3:-69155463 None:intergenic
ACCTTACGTACCAAAACCCC+CGG 0.570737 3.3:+69155666 MS.gene25726:CDS
CAATGAGAACCTGAAGAGCA+AGG 0.571048 3.3:-69156365 None:intergenic
GAACATGTTTGTTGTGCTGG+TGG 0.572842 3.3:-69156159 None:intergenic
GAACATAAGGTGGTGTTACA+GGG 0.574230 3.3:-69155762 None:intergenic
GAACATAAGGTGGTGTTACA+GGG 0.574230 3.3:-69155834 None:intergenic
TGGTGGTGGTTTCACAACCG+GGG 0.576934 3.3:-69155683 None:intergenic
GCATATATGATTAATAAGCT+GGG 0.577240 3.3:-69156422 None:intergenic
TGTGGTGGGTGCACTACTGG+GGG 0.578476 3.3:-69155571 None:intergenic
GTTGGTGGTGTTACAATAGG+TGG 0.578628 3.3:-69156036 None:intergenic
ACTGGTGGCTTAACAATAGG+AGG 0.579565 3.3:-69155406 None:intergenic
ACCCAACTTCAAAGCATCAA+TGG 0.579869 3.3:-69156181 None:intergenic
AGGTACTCAAGTTCAAGAGA+AGG 0.579976 3.3:-69155321 None:intergenic
GTTTCACTAGGTGGTGTTGG+TGG 0.580655 3.3:-69156096 None:intergenic
TTTGGTGGTTTGTGAACTGG+TGG 0.584308 3.3:-69155421 None:intergenic
CAAGAGAAGGATGAAAACAT+TGG 0.585017 3.3:-69155308 None:intergenic
AATGAGAACCTGAAGAGCAA+GGG 0.587112 3.3:-69156364 None:intergenic
GGAGGTAGTGGAACATGTGG+TGG 0.588460 3.3:-69155892 None:intergenic
GGACTCATACATATTGGTAT+CGG 0.594117 3.3:+69156225 MS.gene25726:CDS
TGTGGCAAAACTCCACCAGA+AGG 0.594689 3.3:+69156390 MS.gene25726:CDS
CACATAAGGTGGATGTACTG+GGG 0.597608 3.3:-69155605 None:intergenic
ACTGGTGGTTTAGGTACATA+GGG 0.604382 3.3:-69155736 None:intergenic
ACTGGTGGTTTAGGTACATA+GGG 0.604382 3.3:-69155808 None:intergenic
ACTGGTGGTGTCACAATTGG+AGG 0.619027 3.3:-69156066 None:intergenic
GGAGGTAGAGGAACATGTGG+TGG 0.622203 3.3:-69155979 None:intergenic
ATGAGAACCTGAAGAGCAAG+GGG 0.626266 3.3:-69156363 None:intergenic
TGTGGTGGGAAAACAATTGG+TGG 0.626847 3.3:-69155877 None:intergenic
GGCTTGGGTAAGGACAATAA+GGG 0.629172 3.3:-69155363 None:intergenic
GAGGTAGTGGAACATGTGGT+GGG 0.631936 3.3:-69155891 None:intergenic
GTGGCAAAACTCCACCAGAA+GGG 0.633657 3.3:+69156391 MS.gene25726:CDS
GTAGGTGGATAAGGTACAAG+TGG 0.636320 3.3:-69156135 None:intergenic
TCCAATTGTGACACCACCAG+TGG 0.639965 3.3:+69156068 MS.gene25726:CDS
GGGCACTTAAACCCTTCTGG+TGG 0.641808 3.3:-69156402 None:intergenic
GGTGTTACAGGGACAACTGG+TGG 0.641906 3.3:-69155751 None:intergenic
GGTGTTACAGGGACAACTGG+TGG 0.641906 3.3:-69155823 None:intergenic
GGCGGTGATGGTACAACTGG+AGG 0.645853 3.3:-69155910 None:intergenic
GGTGGATAAGGTACAAGTGG+TGG 0.651301 3.3:-69156132 None:intergenic
GGTGTTGGGACATAAGGTGG+CGG 0.673173 3.3:-69155928 None:intergenic
CTGGTGGCTTAACAATAGGA+GGG 0.675325 3.3:-69155405 None:intergenic
GGTGGTGGTTGCACATAAGG+TGG 0.679674 3.3:-69156018 None:intergenic
GGACATGGTGTTTCACTAGG+TGG 0.681972 3.3:-69156105 None:intergenic
TAGGGTGGTCTCACAACAGG+TGG 0.682111 3.3:-69155718 None:intergenic
TAGGGTGGTCTCACAACAGG+TGG 0.682111 3.3:-69155790 None:intergenic
GGTGTTACAGGCACAACTGG+AGG 0.684392 3.3:-69155997 None:intergenic
GGTGGTGGTTTCACAACCGG+GGG 0.687563 3.3:-69155682 None:intergenic
ACATAAGGTGGATGTACTGG+GGG 0.689428 3.3:-69155604 None:intergenic
GGTGGCTTAGGGACATATGG+TGG 0.693700 3.3:-69155700 None:intergenic
GGTGGCTTAGGAACATAAGG+TGG 0.699096 3.3:-69155844 None:intergenic
ACTGGAGGTAGAGGAACATG+TGG 0.699937 3.3:-69155982 None:intergenic
GTTGGTGGTGTAACCACTGG+TGG 0.706491 3.3:-69156081 None:intergenic
GGTGGCTTAGGAACATAAGG+TGG 0.709677 3.3:-69155772 None:intergenic
GTGGCTTAACAATAGGAGGG+TGG 0.714929 3.3:-69155402 None:intergenic
GGTGGTTTAGGTACATAGGG+TGG 0.730445 3.3:-69155733 None:intergenic
GGTGGTTTAGGTACATAGGG+TGG 0.730445 3.3:-69155805 None:intergenic
ACTGGAGGTAGTGGAACATG+TGG 0.746997 3.3:-69155895 None:intergenic
TGAGAACCTGAAGAGCAAGG+GGG 0.789043 3.3:-69156362 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AAGAAGTTTAAGTCTAATAG+TGG - chr3.3:69156325-69156344 None:intergenic 25.0%
ACTATTGGAGGTTTAACAAT+TGG - chr3.3:69155640-69155659 None:intergenic 30.0%
ATTGGAGGTTTAACAATTGG+TGG - chr3.3:69155637-69155656 None:intergenic 35.0%
CAAGAGAAGGATGAAAACAT+TGG - chr3.3:69155311-69155330 None:intergenic 35.0%
GGACTCATACATATTGGTAT+CGG + chr3.3:69156225-69156244 MS.gene25726:CDS 35.0%
TTAGGAGTAGGAGAATACTT+TGG - chr3.3:69155442-69155461 None:intergenic 35.0%
! ACAATTGGTGGTTTCACAAT+TGG - chr3.3:69155868-69155887 None:intergenic 35.0%
! ACATGTGGTGGAAAAACAAT+TGG - chr3.3:69155970-69155989 None:intergenic 35.0%
!! GGTTTAACAATTGGTGGTTT+TGG - chr3.3:69155631-69155650 None:intergenic 35.0%
!! TCCATTGATGCTTTGAAGTT+GGG + chr3.3:69156180-69156199 MS.gene25726:CDS 35.0%
!! TTCCATTGATGCTTTGAAGT+TGG + chr3.3:69156179-69156198 MS.gene25726:CDS 35.0%
AACTGGTGGTTTAGGTACAT+AGG - chr3.3:69155740-69155759 None:intergenic 40.0%
AATGAGAACCTGAAGAGCAA+GGG - chr3.3:69156367-69156386 None:intergenic 40.0%
ACATGTTGTCCATTGCTTCA+AGG + chr3.3:69156264-69156283 MS.gene25726:CDS 40.0%
ACGTAAGGTGGATGTACTAT+TGG - chr3.3:69155655-69155674 None:intergenic 40.0%
ACTGGTGGTTTAGGTACATA+GGG - chr3.3:69155739-69155758 None:intergenic 40.0%
AGGTACTCAAGTTCAAGAGA+AGG - chr3.3:69155324-69155343 None:intergenic 40.0%
GATGGTTTAGGAGGATATCT+TGG - chr3.3:69155484-69155503 None:intergenic 40.0%
GCAAGCAAGAACATTGAGTA+AGG - chr3.3:69155344-69155363 None:intergenic 40.0%
TAAGGTGGATGTACTATTGG+AGG - chr3.3:69155652-69155671 None:intergenic 40.0%
TCAACAAGTCCTTGAAGCAA+TGG - chr3.3:69156276-69156295 None:intergenic 40.0%
TGAACTGGTGGCTTAACAAT+AGG - chr3.3:69155412-69155431 None:intergenic 40.0%
! ACATGTGGTGGGAAAACAAT+TGG - chr3.3:69155883-69155902 None:intergenic 40.0%
! ACCCAACTTCAAAGCATCAA+TGG - chr3.3:69156184-69156203 None:intergenic 40.0%
! ATTGGTGGCTTAGGAACATA+AGG - chr3.3:69155850-69155869 None:intergenic 40.0%
! ATTGGTGGTTTCACAATTGG+AGG - chr3.3:69155865-69155884 None:intergenic 40.0%
! ATTGGTGGTTTCACAATTGG+TGG - chr3.3:69155865-69155884 None:intergenic 40.0%
! CTCATACATATTGGTATCGG+TGG + chr3.3:69156228-69156247 MS.gene25726:CDS 40.0%
! CTTCAGGTTCTCATTGATTG+TGG + chr3.3:69156372-69156391 MS.gene25726:CDS 40.0%
! TACTTTGGTGGTTTGTGAAC+TGG - chr3.3:69155427-69155446 None:intergenic 40.0%
! TATCTTGGTGGTTTGTGAAC+TGG - chr3.3:69155469-69155488 None:intergenic 40.0%
! TGTGGTGGAAAAACAATTGG+TGG - chr3.3:69155967-69155986 None:intergenic 40.0%
!! ATGGAACATGTTTGTTGTGC+TGG - chr3.3:69156165-69156184 None:intergenic 40.0%
!! CTTGGTGGACTCATACATAT+TGG + chr3.3:69156219-69156238 MS.gene25726:CDS 40.0%
!! GAACATAAGGTGGTGTTACA+GGG - chr3.3:69155765-69155784 None:intergenic 40.0%
!! GCTTCAAGGACTTGTTGATT+TGG + chr3.3:69156278-69156297 MS.gene25726:CDS 40.0%
!! GTTTCACAATTGGAGGTGTT+GGG - chr3.3:69155945-69155964 None:intergenic 40.0%
!! TTTGGAACATGTGGTGGTTT+TGG - chr3.3:69155532-69155551 None:intergenic 40.0%
!!! ATTGGTGGTTTTGGCACATA+AGG - chr3.3:69155622-69155641 None:intergenic 40.0%
!!! GTGGTTTTGGTGTTGATGAT+GGG - chr3.3:69155519-69155538 None:intergenic 40.0%
!!! TGGTTTTGGTGTTGATGATG+GGG - chr3.3:69155518-69155537 None:intergenic 40.0%
ACAGGTGGCTTAGGAACATA+AGG - chr3.3:69155778-69155797 None:intergenic 45.0%
ACATAAGGTGGATGTACTGG+GGG - chr3.3:69155607-69155626 None:intergenic 45.0%
ACTGGTGGCTTAACAATAGG+AGG - chr3.3:69155409-69155428 None:intergenic 45.0%
ATGAGAACCTGAAGAGCAAG+GGG - chr3.3:69156366-69156385 None:intergenic 45.0%
CAATGAGAACCTGAAGAGCA+AGG - chr3.3:69156368-69156387 None:intergenic 45.0%
CACATAAGGTGGATGTACTG+GGG - chr3.3:69155608-69155627 None:intergenic 45.0%
CTGGTGGCTTAACAATAGGA+GGG - chr3.3:69155408-69155427 None:intergenic 45.0%
GCACATAAGGTGGATGTACT+GGG - chr3.3:69155609-69155628 None:intergenic 45.0%
GGAGTAGGAGAATACTTTGG+TGG - chr3.3:69155439-69155458 None:intergenic 45.0%
GGCTTGGGTAAGGACAATAA+GGG - chr3.3:69155366-69155385 None:intergenic 45.0%
GGTTTAGGAGGATATCTTGG+TGG - chr3.3:69155481-69155500 None:intergenic 45.0%
GGTTTGTGAACTGGTGGTTT+AGG - chr3.3:69155460-69155479 None:intergenic 45.0%
GTAGGTGGATAAGGTACAAG+TGG - chr3.3:69156138-69156157 None:intergenic 45.0%
TGAACTGGTGGTTTAGGAGT+AGG - chr3.3:69155454-69155473 None:intergenic 45.0%
! ATAGGTGGTGGTTGCACATA+AGG - chr3.3:69156024-69156043 None:intergenic 45.0%
! GGTTTCACAATTGGAGGTGT+TGG - chr3.3:69155946-69155965 None:intergenic 45.0%
! GGTTTCACAATTGGTGGCTT+AGG - chr3.3:69155859-69155878 None:intergenic 45.0%
! TGTGGTGGGAAAACAATTGG+TGG - chr3.3:69155880-69155899 None:intergenic 45.0%
! TTGGGATGATGAGGAGGTTT+TGG - chr3.3:69155550-69155569 None:intergenic 45.0%
! TTTGGTGGTTTGTGAACTGG+TGG - chr3.3:69155424-69155443 None:intergenic 45.0%
!! ACAATTGGAGGTGTTGGTGT+TGG - chr3.3:69156057-69156076 None:intergenic 45.0%
!! ATTGGAGGTGTTGGGACATA+AGG - chr3.3:69155937-69155956 None:intergenic 45.0%
!! GAACATGTTTGTTGTGCTGG+TGG - chr3.3:69156162-69156181 None:intergenic 45.0%
!! GGAACATAAGGTGGTGTTAC+AGG - chr3.3:69155766-69155785 None:intergenic 45.0%
!! GGTGTTGGTGGTGTTACAAT+AGG - chr3.3:69156042-69156061 None:intergenic 45.0%
!! GTTGGTGGTGTTACAATAGG+TGG - chr3.3:69156039-69156058 None:intergenic 45.0%
!! TATGGTGGTGGTTTCACAAC+CGG - chr3.3:69155688-69155707 None:intergenic 45.0%
!! TGCACATAAGGTGGTGTTAC+AGG - chr3.3:69156012-69156031 None:intergenic 45.0%
!!! GGTGGTTTTGGTGTTGATGA+TGG - chr3.3:69155520-69155539 None:intergenic 45.0%
!!! GGTTTTGGTGTTGATGATGG+GGG - chr3.3:69155517-69155536 None:intergenic 45.0%
!!! TGAGGAGGTTTTGGAACATG+TGG - chr3.3:69155541-69155560 None:intergenic 45.0%
ACAATAGGAGGGTGGTGTGT+TGG - chr3.3:69155397-69155416 None:intergenic 50.0%
ACAGGGACAACTGGTGGTTT+AGG - chr3.3:69155748-69155767 None:intergenic 50.0%
ACAGGTGGCTTAGGGACATA+TGG - chr3.3:69155706-69155725 None:intergenic 50.0%
ACATAGGGTGGTCTCACAAC+AGG - chr3.3:69155724-69155743 None:intergenic 50.0%
ACCTTACGTACCAAAACCCC+CGG + chr3.3:69155666-69155685 MS.gene25726:CDS 50.0%
ACTGGAGGTAGAGGAACATG+TGG - chr3.3:69155985-69156004 None:intergenic 50.0%
GATGGTACAACTGGAGGTAG+TGG - chr3.3:69155907-69155926 None:intergenic 50.0%
GGACATGGTGTTTCACTAGG+TGG - chr3.3:69156108-69156127 None:intergenic 50.0%
GGAGGACATGGTGTTTCACT+AGG - chr3.3:69156111-69156130 None:intergenic 50.0%
GGATAAGGTACAAGTGGTGG+TGG - chr3.3:69156132-69156151 None:intergenic 50.0%
GGCACATAAGGTGGATGTAC+TGG - chr3.3:69155610-69155629 None:intergenic 50.0%
GGGCTTGGGTAAGGACAATA+AGG - chr3.3:69155367-69155386 None:intergenic 50.0%
GGTGGATAAGGTACAAGTGG+TGG - chr3.3:69156135-69156154 None:intergenic 50.0%
GGTGGCTTAGGAACATAAGG+TGG - chr3.3:69155775-69155794 None:intergenic 50.0%
GGTGGTTTAGGTACATAGGG+TGG - chr3.3:69155736-69155755 None:intergenic 50.0%
GGTGTTTCACTAGGTGGTGT+TGG - chr3.3:69156102-69156121 None:intergenic 50.0%
GTCTCACAACAGGTGGCTTA+GGG - chr3.3:69155714-69155733 None:intergenic 50.0%
GTGGCAAAACTCCACCAGAA+GGG + chr3.3:69156391-69156410 MS.gene25726:CDS 50.0%
GTGGCTTAACAATAGGAGGG+TGG - chr3.3:69155405-69155424 None:intergenic 50.0%
TCCAATTGTGACACCACCAG+TGG + chr3.3:69156068-69156087 MS.gene25726:CDS 50.0%
TGAGAACCTGAAGAGCAAGG+GGG - chr3.3:69156365-69156384 None:intergenic 50.0%
TGTGGCAAAACTCCACCAGA+AGG + chr3.3:69156390-69156409 MS.gene25726:CDS 50.0%
TGTTATCCCCCTTGCTCTTC+AGG + chr3.3:69156356-69156375 MS.gene25726:CDS 50.0%
! CTTGGTGGTTTGTGAACTGG+TGG - chr3.3:69155466-69155485 None:intergenic 50.0%
! GCATGTGTTGATGTGCTTGG+TGG + chr3.3:69156204-69156223 MS.gene25726:CDS 50.0%
! GGACAAGGTGATGGTTTAGG+AGG - chr3.3:69155493-69155512 None:intergenic 50.0%
! GGTGCATGTGTTGATGTGCT+TGG + chr3.3:69156201-69156220 MS.gene25726:CDS 50.0%
! GGTGGACAAGGTGATGGTTT+AGG - chr3.3:69155496-69155515 None:intergenic 50.0%
! GGTGTCACAATTGGAGGTGT+TGG - chr3.3:69156063-69156082 None:intergenic 50.0%
! GTTTCACTAGGTGGTGTTGG+TGG - chr3.3:69156099-69156118 None:intergenic 50.0%
!! ACCACTGGTGGTGTCACAAT+TGG - chr3.3:69156072-69156091 None:intergenic 50.0%
!! ACTGGAGGTAGTGGAACATG+TGG - chr3.3:69155898-69155917 None:intergenic 50.0%
!! ACTGGTGGTGTCACAATTGG+AGG - chr3.3:69156069-69156088 None:intergenic 50.0%
!! ATGGTGGTGGTTTCACAACC+GGG - chr3.3:69155687-69155706 None:intergenic 50.0%
!! ATTGGAGGTGTTGGTGTTGG+TGG - chr3.3:69156054-69156073 None:intergenic 50.0%
!! GAGGTAGTGGAACATGTGGT+GGG - chr3.3:69155894-69155913 None:intergenic 50.0%
!! GGTGGTGTGTTGGTGGTTTA+GGG - chr3.3:69155387-69155406 None:intergenic 50.0%
!! GGTGGTGTTACAATAGGTGG+TGG - chr3.3:69156036-69156055 None:intergenic 50.0%
!! GTGTTGGTGGTTTAGGGCTT+GGG - chr3.3:69155381-69155400 None:intergenic 50.0%
!! GTTTGTTGTGCTGGTGGTGT+AGG - chr3.3:69156156-69156175 None:intergenic 50.0%
!! TAAGGTACAAGTGGTGGTGG+AGG - chr3.3:69156129-69156148 None:intergenic 50.0%
!! TGTGTTGGTGGTTTAGGGCT+TGG - chr3.3:69155382-69155401 None:intergenic 50.0%
!! TTTGGTGTTGATGATGGGGG+TGG - chr3.3:69155514-69155533 None:intergenic 50.0%
!!! ACTGGGGGTTTTGGAACATG+TGG - chr3.3:69155592-69155611 None:intergenic 50.0%
!!! GGAGGTTTTGGAACATGTGG+TGG - chr3.3:69155538-69155557 None:intergenic 50.0%
!!! GGGGTTTTGGAACATGTGGT+GGG - chr3.3:69155588-69155607 None:intergenic 50.0%
!!! GGTGGTTTTGGCACATAAGG+TGG - chr3.3:69155619-69155638 None:intergenic 50.0%
ACAGGCACAACTGGAGGTAG+AGG - chr3.3:69155994-69156013 None:intergenic 55.0%
ATAGGAGGGTGGTGTGTTGG+TGG - chr3.3:69155394-69155413 None:intergenic 55.0%
GCTGGGCACTTAAACCCTTC+TGG - chr3.3:69156408-69156427 None:intergenic 55.0%
GGAGGTAGAGGAACATGTGG+TGG - chr3.3:69155982-69156001 None:intergenic 55.0%
GGCTTAGGGACATATGGTGG+TGG - chr3.3:69155700-69155719 None:intergenic 55.0%
GGGCACTTAAACCCTTCTGG+TGG - chr3.3:69156405-69156424 None:intergenic 55.0%
GGTCTCACAACAGGTGGCTT+AGG - chr3.3:69155715-69155734 None:intergenic 55.0%
GGTGGCTTAGGGACATATGG+TGG - chr3.3:69155703-69155722 None:intergenic 55.0%
TAGGGTGGTCTCACAACAGG+TGG - chr3.3:69155721-69155740 None:intergenic 55.0%
! ACTGGGGGTTTGGGATGATG+AGG - chr3.3:69155559-69155578 None:intergenic 55.0%
! GCTGGTGGTGTAGGTGGATA+AGG - chr3.3:69156147-69156166 None:intergenic 55.0%
! GGTGGATGTACTGGGGGTTT+TGG - chr3.3:69155601-69155620 None:intergenic 55.0%
! GGTGGTGGTTGCACATAAGG+TGG - chr3.3:69156021-69156040 None:intergenic 55.0%
! GGTGGTTTAGGGCTTGGGTA+AGG - chr3.3:69155376-69155395 None:intergenic 55.0%
! GGTGTTACAGGCACAACTGG+AGG - chr3.3:69156000-69156019 None:intergenic 55.0%
! GGTGTTACAGGGACAACTGG+TGG - chr3.3:69155754-69155773 None:intergenic 55.0%
! GGTGTTGGGACATAAGGTGG+CGG - chr3.3:69155931-69155950 None:intergenic 55.0%
! GGTTTCACAACCGGGGGTTT+TGG - chr3.3:69155679-69155698 None:intergenic 55.0%
! TGTTGTGCTGGTGGTGTAGG+TGG - chr3.3:69156153-69156172 None:intergenic 55.0%
!! ACAAGTGGTGGTGGAGGACA+TGG - chr3.3:69156123-69156142 None:intergenic 55.0%
!! ACATGTGGTGGGTGCACTAC+TGG - chr3.3:69155577-69155596 None:intergenic 55.0%
!! ACCGGGGGTTTTGGTACGTA+AGG - chr3.3:69155670-69155689 None:intergenic 55.0%
!! ATGTGGTGGGTGCACTACTG+GGG - chr3.3:69155575-69155594 None:intergenic 55.0%
!! CATGTGGTGGGTGCACTACT+GGG - chr3.3:69155576-69155595 None:intergenic 55.0%
!! GGAGGTAGTGGAACATGTGG+TGG - chr3.3:69155895-69155914 None:intergenic 55.0%
!! GGAGGTGTTGGGACATAAGG+TGG - chr3.3:69155934-69155953 None:intergenic 55.0%
!! GGGGGTTTTGGTACGTAAGG+TGG - chr3.3:69155667-69155686 None:intergenic 55.0%
!! GGGTGGTGTGTTGGTGGTTT+AGG - chr3.3:69155388-69155407 None:intergenic 55.0%
!! GGTGGTGTTACAGGCACAAC+TGG - chr3.3:69156003-69156022 None:intergenic 55.0%
!! GGTGGTGTTACAGGGACAAC+TGG - chr3.3:69155757-69155776 None:intergenic 55.0%
!! GGTGTTGGTGGTGTAACCAC+TGG - chr3.3:69156087-69156106 None:intergenic 55.0%
!! GTTGATGATGGGGGTGGACA+AGG - chr3.3:69155508-69155527 None:intergenic 55.0%
!! GTTGGTGGTGTAACCACTGG+TGG - chr3.3:69156084-69156103 None:intergenic 55.0%
!! TGGTGGTGGTTTCACAACCG+GGG - chr3.3:69155686-69155705 None:intergenic 55.0%
!!! GGGGGTTTTGGAACATGTGG+TGG - chr3.3:69155589-69155608 None:intergenic 55.0%
GATGGGGGTGGACAAGGTGA+TGG - chr3.3:69155502-69155521 None:intergenic 60.0%
GGGTGCACTACTGGGGGTTT+GGG - chr3.3:69155568-69155587 None:intergenic 60.0%
TGGGTGCACTACTGGGGGTT+TGG - chr3.3:69155569-69155588 None:intergenic 60.0%
! GGCGGTGATGGTACAACTGG+AGG - chr3.3:69155913-69155932 None:intergenic 60.0%
! GGGACATAAGGTGGCGGTGA+TGG - chr3.3:69155925-69155944 None:intergenic 60.0%
! GGGGGTTTGGGATGATGAGG+AGG - chr3.3:69155556-69155575 None:intergenic 60.0%
! GGTGGCGGTGATGGTACAAC+TGG - chr3.3:69155916-69155935 None:intergenic 60.0%
! GGTGGTGGTTTCACAACCGG+GGG - chr3.3:69155685-69155704 None:intergenic 60.0%
!! TGTGGTGGGTGCACTACTGG+GGG - chr3.3:69155574-69155593 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 69155289 69156434 69155289 ID=MS.gene25726
chr3.3 mRNA 69155289 69156434 69155289 ID=MS.gene25726.t1;Parent=MS.gene25726
chr3.3 exon 69155289 69156434 69155289 ID=MS.gene25726.t1.exon1;Parent=MS.gene25726.t1
chr3.3 CDS 69155289 69156434 69155289 ID=cds.MS.gene25726.t1;Parent=MS.gene25726.t1
Gene Sequence

>MS.gene25726

ATGGCTAACTATGCTCTAGCCAATGTTTTCATCCTTCTCTTGAACTTGAGTACCTTACTCAATGTTCTTGCTTGCCCTTATTGTCCTTACCCAAGCCCTAAACCACCAACACACCACCCTCCTATTGTTAAGCCACCAGTTCACAAACCACCAAAGTATTCTCCTACTCCTAAACCACCAGTTCACAAACCACCAAGATATCCTCCTAAACCATCACCTTGTCCACCCCCATCATCAACACCAAAACCACCACATGTTCCAAAACCTCCTCATCATCCCAAACCCCCAGTAGTGCACCCACCACATGTTCCAAAACCCCCAGTACATCCACCTTATGTGCCAAAACCACCAATTGTTAAACCTCCAATAGTACATCCACCTTACGTACCAAAACCCCCGGTTGTGAAACCACCACCATATGTCCCTAAGCCACCTGTTGTGAGACCACCCTATGTACCTAAACCACCAGTTGTCCCTGTAACACCACCTTATGTTCCTAAGCCACCTGTTGTGAGACCACCCTATGTACCTAAACCACCAGTTGTCCCTGTAACACCACCTTATGTTCCTAAGCCACCAATTGTGAAACCACCAATTGTTTTCCCACCACATGTTCCACTACCTCCAGTTGTACCATCACCGCCACCTTATGTCCCAACACCTCCAATTGTGAAACCACCAATTGTTTTTCCACCACATGTTCCTCTACCTCCAGTTGTGCCTGTAACACCACCTTATGTGCAACCACCACCTATTGTAACACCACCAACACCAACACCTCCAATTGTGACACCACCAGTGGTTACACCACCAACACCACCTAGTGAAACACCATGTCCTCCACCACCACTTGTACCTTATCCACCTACACCACCAGCACAACAAACATGTTCCATTGATGCTTTGAAGTTGGGTGCATGTGTTGATGTGCTTGGTGGACTCATACATATTGGTATCGGTGGAAGTGCTAAACAAACATGTTGTCCATTGCTTCAAGGACTTGTTGATTTGGATGCAGCTATATGTCTCTGCACCACTATTAGACTTAAACTTCTTAATATCAATCTTGTTATCCCCCTTGCTCTTCAGGTTCTCATTGATTGTGGCAAAACTCCACCAGAAGGGTTTAAGTGCCCAGCTTATTAA

Protein sequence

>MS.gene25726.t1

MANYALANVFILLLNLSTLLNVLACPYCPYPSPKPPTHHPPIVKPPVHKPPKYSPTPKPPVHKPPRYPPKPSPCPPPSSTPKPPHVPKPPHHPKPPVVHPPHVPKPPVHPPYVPKPPIVKPPIVHPPYVPKPPVVKPPPYVPKPPVVRPPYVPKPPVVPVTPPYVPKPPVVRPPYVPKPPVVPVTPPYVPKPPIVKPPIVFPPHVPLPPVVPSPPPYVPTPPIVKPPIVFPPHVPLPPVVPVTPPYVQPPPIVTPPTPTPPIVTPPVVTPPTPPSETPCPPPPLVPYPPTPPAQQTCSIDALKLGACVDVLGGLIHIGIGGSAKQTCCPLLQGLVDLDAAICLCTTIRLKLLNINLVIPLALQVLIDCGKTPPEGFKCPAY