Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80664.t1 | XP_003616586.1 | 97.4 | 151 | 2 | 1 | 1 | 149 | 139 | 289 | 1.20E-75 | 292.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80664.t1 | P25794 | 93.4 | 151 | 8 | 1 | 1 | 149 | 139 | 289 | 1.5e-74 | 280.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80664.t1 | Q946J9 | 97.4 | 151 | 2 | 1 | 1 | 149 | 139 | 289 | 8.8e-76 | 292.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051973 | MS.gene80664 | 0.80996 | 1.46E-50 | -1.69E-46 |
| MS.gene052015 | MS.gene80664 | 0.812599 | 3.91E-51 | -1.69E-46 |
| MS.gene052494 | MS.gene80664 | 0.828542 | 8.48E-55 | -1.69E-46 |
| MS.gene054707 | MS.gene80664 | 0.805398 | 1.36E-49 | -1.69E-46 |
| MS.gene05470 | MS.gene80664 | -0.8075 | 4.90E-50 | -1.69E-46 |
| MS.gene055858 | MS.gene80664 | 0.801268 | 9.76E-49 | -1.69E-46 |
| MS.gene05589 | MS.gene80664 | -0.808829 | 2.56E-50 | -1.69E-46 |
| MS.gene056988 | MS.gene80664 | 0.817511 | 3.18E-52 | -1.69E-46 |
| MS.gene058157 | MS.gene80664 | -0.811316 | 7.44E-51 | -1.69E-46 |
| MS.gene05960 | MS.gene80664 | 0.824503 | 7.79E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80664.t1 | MTR_5g082070 | 97.351 | 151 | 2 | 1 | 1 | 149 | 139 | 289 | 3.09e-100 | 289 |
| MS.gene80664.t1 | MTR_3g070210 | 90.728 | 151 | 12 | 1 | 1 | 149 | 139 | 289 | 3.00e-92 | 269 |
| MS.gene80664.t1 | MTR_8g098375 | 85.430 | 151 | 20 | 1 | 1 | 149 | 136 | 286 | 3.14e-89 | 261 |
| MS.gene80664.t1 | MTR_5g010150 | 84.768 | 151 | 21 | 1 | 1 | 149 | 136 | 286 | 5.56e-88 | 258 |
| MS.gene80664.t1 | MTR_4g415300 | 79.470 | 151 | 28 | 2 | 1 | 149 | 140 | 289 | 7.46e-80 | 238 |
| MS.gene80664.t1 | MTR_3g070210 | 88.800 | 125 | 12 | 1 | 1 | 123 | 139 | 263 | 2.32e-72 | 218 |
| MS.gene80664.t1 | MTR_7g101190 | 71.724 | 145 | 38 | 2 | 1 | 143 | 129 | 272 | 1.34e-69 | 211 |
| MS.gene80664.t1 | MTR_1g095070 | 72.414 | 145 | 37 | 2 | 1 | 143 | 63 | 206 | 4.85e-69 | 208 |
| MS.gene80664.t1 | MTR_3g118010 | 70.667 | 150 | 41 | 2 | 1 | 148 | 121 | 269 | 3.55e-68 | 207 |
| MS.gene80664.t1 | MTR_2g094270 | 66.667 | 150 | 47 | 2 | 1 | 148 | 131 | 279 | 3.28e-67 | 205 |
| MS.gene80664.t1 | MTR_4g059390 | 66.000 | 150 | 48 | 2 | 1 | 148 | 129 | 277 | 1.08e-63 | 196 |
| MS.gene80664.t1 | MTR_1g095070 | 64.539 | 141 | 35 | 3 | 1 | 139 | 63 | 190 | 5.68e-56 | 174 |
| MS.gene80664.t1 | MTR_2g094270 | 69.421 | 121 | 34 | 2 | 1 | 119 | 131 | 250 | 2.72e-54 | 172 |
| MS.gene80664.t1 | MTR_8g098375 | 77.647 | 85 | 19 | 0 | 1 | 85 | 136 | 220 | 2.73e-40 | 135 |
| MS.gene80664.t1 | MTR_3g070210 | 87.671 | 73 | 9 | 0 | 1 | 73 | 139 | 211 | 9.68e-39 | 130 |
| MS.gene80664.t1 | MTR_5g010150 | 82.192 | 73 | 13 | 0 | 1 | 73 | 136 | 208 | 3.74e-37 | 127 |
| MS.gene80664.t1 | MTR_4g415300 | 62.069 | 87 | 32 | 1 | 1 | 87 | 140 | 225 | 3.24e-29 | 106 |
| MS.gene80664.t1 | MTR_4g059390 | 65.753 | 73 | 24 | 1 | 1 | 73 | 129 | 200 | 7.18e-25 | 95.1 |
| MS.gene80664.t1 | MTR_6g069040 | 40.411 | 146 | 75 | 5 | 2 | 145 | 108 | 243 | 4.18e-16 | 72.8 |
| MS.gene80664.t1 | MTR_1g077540 | 36.986 | 146 | 80 | 5 | 2 | 145 | 108 | 243 | 1.04e-13 | 66.6 |
| MS.gene80664.t1 | MTR_2g101370 | 37.143 | 140 | 77 | 4 | 2 | 140 | 107 | 236 | 1.93e-13 | 65.9 |
| MS.gene80664.t1 | MTR_5g012810 | 42.857 | 105 | 54 | 3 | 34 | 137 | 132 | 231 | 8.27e-13 | 63.9 |
| MS.gene80664.t1 | MTR_4g063090 | 35.036 | 137 | 78 | 4 | 2 | 137 | 108 | 234 | 2.30e-12 | 62.8 |
| MS.gene80664.t1 | MTR_8g013680 | 41.667 | 96 | 50 | 3 | 43 | 137 | 142 | 232 | 6.74e-12 | 61.6 |
| MS.gene80664.t1 | MTR_1g115405 | 40.000 | 105 | 57 | 3 | 34 | 137 | 135 | 234 | 4.92e-11 | 59.3 |
| MS.gene80664.t1 | MTR_1g006490 | 38.182 | 110 | 62 | 3 | 25 | 133 | 120 | 224 | 7.29e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80664.t1 | AT4G00430 | 84.768 | 151 | 20 | 2 | 1 | 149 | 137 | 286 | 3.44e-84 | 249 |
| MS.gene80664.t1 | AT3G61430 | 84.106 | 151 | 21 | 2 | 1 | 149 | 136 | 285 | 6.01e-84 | 248 |
| MS.gene80664.t1 | AT3G61430 | 84.106 | 151 | 21 | 2 | 1 | 149 | 136 | 285 | 6.01e-84 | 248 |
| MS.gene80664.t1 | AT2G45960 | 83.444 | 151 | 22 | 2 | 1 | 149 | 136 | 285 | 1.54e-83 | 247 |
| MS.gene80664.t1 | AT1G01620 | 83.444 | 151 | 22 | 2 | 1 | 149 | 64 | 213 | 5.08e-83 | 243 |
| MS.gene80664.t1 | AT1G01620 | 83.444 | 151 | 22 | 2 | 1 | 149 | 136 | 285 | 1.96e-82 | 244 |
| MS.gene80664.t1 | AT4G23400 | 84.106 | 151 | 21 | 2 | 1 | 149 | 137 | 286 | 4.79e-82 | 243 |
| MS.gene80664.t1 | AT2G37180 | 70.667 | 150 | 41 | 2 | 1 | 148 | 127 | 275 | 2.01e-68 | 208 |
| MS.gene80664.t1 | AT3G53420 | 70.395 | 152 | 38 | 3 | 1 | 148 | 129 | 277 | 1.52e-67 | 206 |
| MS.gene80664.t1 | AT3G53420 | 70.395 | 152 | 38 | 3 | 1 | 148 | 129 | 277 | 1.52e-67 | 206 |
| MS.gene80664.t1 | AT4G35100 | 70.000 | 150 | 42 | 2 | 1 | 148 | 122 | 270 | 1.53e-67 | 206 |
| MS.gene80664.t1 | AT4G35100 | 70.000 | 150 | 42 | 2 | 1 | 148 | 122 | 270 | 1.53e-67 | 206 |
| MS.gene80664.t1 | AT2G37170 | 70.000 | 150 | 42 | 2 | 1 | 148 | 170 | 318 | 3.49e-67 | 207 |
| MS.gene80664.t1 | AT2G16850 | 69.333 | 150 | 43 | 2 | 1 | 148 | 120 | 268 | 4.38e-67 | 205 |
| MS.gene80664.t1 | AT2G37170 | 70.000 | 150 | 42 | 2 | 1 | 148 | 127 | 275 | 4.53e-67 | 205 |
| MS.gene80664.t1 | AT3G54820 | 71.429 | 147 | 35 | 3 | 1 | 143 | 128 | 271 | 2.82e-66 | 203 |
| MS.gene80664.t1 | AT5G60660 | 68.421 | 152 | 41 | 3 | 1 | 148 | 129 | 277 | 3.68e-66 | 203 |
| MS.gene80664.t1 | AT2G39010 | 66.667 | 150 | 47 | 2 | 1 | 148 | 128 | 276 | 4.01e-65 | 200 |
| MS.gene80664.t1 | AT2G45960 | 82.645 | 121 | 18 | 2 | 1 | 119 | 136 | 255 | 2.75e-63 | 195 |
| MS.gene80664.t1 | AT2G45960 | 82.645 | 121 | 18 | 2 | 1 | 119 | 136 | 255 | 1.85e-62 | 194 |
| MS.gene80664.t1 | AT4G00430 | 74.684 | 79 | 19 | 1 | 1 | 79 | 137 | 214 | 8.48e-33 | 115 |
| MS.gene80664.t1 | AT2G39010 | 64.384 | 73 | 25 | 1 | 1 | 73 | 128 | 199 | 1.54e-24 | 94.7 |
| MS.gene80664.t1 | AT1G17810 | 45.133 | 113 | 55 | 4 | 34 | 144 | 143 | 250 | 1.75e-16 | 74.3 |
| MS.gene80664.t1 | AT1G73190 | 39.726 | 146 | 76 | 5 | 2 | 145 | 116 | 251 | 2.07e-16 | 73.9 |
| MS.gene80664.t1 | AT4G01470 | 37.226 | 137 | 75 | 4 | 2 | 137 | 108 | 234 | 5.31e-14 | 67.4 |
| MS.gene80664.t1 | AT5G47450 | 38.686 | 137 | 73 | 6 | 2 | 137 | 106 | 232 | 3.61e-13 | 65.1 |
| MS.gene80664.t1 | AT4G17340 | 41.905 | 105 | 55 | 3 | 34 | 137 | 133 | 232 | 6.07e-13 | 64.3 |
| MS.gene80664.t1 | AT3G16240 | 40.952 | 105 | 56 | 3 | 34 | 137 | 133 | 232 | 1.89e-12 | 63.2 |
| MS.gene80664.t1 | AT2G25810 | 38.182 | 110 | 61 | 4 | 34 | 141 | 129 | 233 | 3.66e-12 | 62.4 |
Find 47 sgRNAs with CRISPR-Local
Find 56 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAATACCAGTTCCAGTAAT+TGG | 0.193062 | 5.4:+64721934 | None:intergenic |
| TTCAGGGTGGGACCATTTAT+TGG | 0.238516 | 5.4:-64721725 | MS.gene80664:CDS |
| TATTCTTGTAGTGGATCTTC+AGG | 0.243468 | 5.4:-64721742 | MS.gene80664:intron |
| TTTGAAGGAAAGACAAGATT+TGG | 0.252728 | 5.4:-64722355 | MS.gene80664:CDS |
| CGCTGTGTTCTTGGTTCACT+TGG | 0.261822 | 5.4:-64721965 | MS.gene80664:CDS |
| GCAAGAGCTGCTCCAATAAA+TGG | 0.306781 | 5.4:+64721713 | None:intergenic |
| AATTGGGTTCGCTGTGTTCT+TGG | 0.323972 | 5.4:-64721974 | MS.gene80664:CDS |
| ACAAGATTTGGAGATCTAAA+AGG | 0.340417 | 5.4:-64722343 | MS.gene80664:CDS |
| CTACATGGTGATGCAATGTT+TGG | 0.359716 | 5.4:-64722410 | None:intergenic |
| TTGGGTGCTATTTGTGGTGC+TGG | 0.389900 | 5.4:-64722391 | MS.gene80664:CDS |
| TTGGCCACTATCCCAATTAC+TGG | 0.392883 | 5.4:-64721946 | MS.gene80664:CDS |
| ATTTGATCACTTTGACTTGA+AGG | 0.406054 | 5.4:+64721655 | None:intergenic |
| CAATGTTTGGGTGCTATTTG+TGG | 0.409953 | 5.4:-64722397 | MS.gene80664:CDS |
| TAATACCAGTTCCAGTAATT+GGG | 0.410603 | 5.4:+64721935 | None:intergenic |
| ACTATCCCAATTACTGGAAC+TGG | 0.426227 | 5.4:-64721940 | MS.gene80664:CDS |
| GGTGCCAACTTTGTTGCTCC+TGG | 0.427799 | 5.4:-64722319 | MS.gene80664:CDS |
| ATTCTTGTAGTGGATCTTCA+GGG | 0.431921 | 5.4:-64721741 | MS.gene80664:intron |
| AGCACCAAGACCATCACCTT+TGG | 0.435976 | 5.4:+64722291 | None:intergenic |
| TACATGGTGATGCAATGTTT+GGG | 0.464448 | 5.4:-64722409 | MS.gene80664:CDS |
| ATTAACCCTGCTCGTAGTCT+TGG | 0.478309 | 5.4:-64721916 | MS.gene80664:CDS |
| TGTGGTGCTGGTGTTGTGAA+AGG | 0.479519 | 5.4:-64722379 | MS.gene80664:CDS |
| TCTTCAACAAGGACCTTGGT+TGG | 0.486748 | 5.4:-64721882 | MS.gene80664:CDS |
| GGTCTTGGTGCTGAAATTGT+TGG | 0.490732 | 5.4:-64722280 | MS.gene80664:CDS |
| TACGGGAACATGAGAGTCTC+TGG | 0.492319 | 5.4:+64722204 | None:intergenic |
| AAGAACACAGCGAACCCAAT+TGG | 0.494251 | 5.4:+64721976 | None:intergenic |
| TCACTTTGACTTGAAGGGAA+TGG | 0.512515 | 5.4:+64721661 | None:intergenic |
| AGTTCCAGTAATTGGGATAG+TGG | 0.513529 | 5.4:+64721942 | None:intergenic |
| TTTGATCACTTTGACTTGAA+GGG | 0.520518 | 5.4:+64721656 | None:intergenic |
| ATTATCTTCAACAAGGACCT+TGG | 0.525491 | 5.4:-64721886 | MS.gene80664:CDS |
| GTTGCTCCTGGTTACACCAA+AGG | 0.542015 | 5.4:-64722307 | MS.gene80664:CDS |
| TACACCAAAGGTGATGGTCT+TGG | 0.554514 | 5.4:-64722295 | MS.gene80664:CDS |
| CCTGGTTACACCAAAGGTGA+TGG | 0.563447 | 5.4:-64722301 | MS.gene80664:CDS |
| CCATCACCTTTGGTGTAACC+AGG | 0.566415 | 5.4:+64722301 | None:intergenic |
| AGCATCGGTGGCTGAGAAGA+CGG | 0.570780 | 5.4:+64722237 | None:intergenic |
| GGCGCTACGTTTAGCATCGG+TGG | 0.574723 | 5.4:+64722225 | None:intergenic |
| TTGTAGTGGATCTTCAGGGT+GGG | 0.576594 | 5.4:-64721737 | MS.gene80664:intron |
| GCAGCACCAAGACTACGAGC+AGG | 0.585086 | 5.4:+64721910 | None:intergenic |
| CTTGTAGTGGATCTTCAGGG+TGG | 0.618253 | 5.4:-64721738 | MS.gene80664:intron |
| GTAACCAGGAGCAACAAAGT+TGG | 0.636963 | 5.4:+64722315 | None:intergenic |
| ACAGCGAACCCAATTGGCAA+TGG | 0.642498 | 5.4:+64721982 | None:intergenic |
| TGCTGCTATTATCTTCAACA+AGG | 0.649253 | 5.4:-64721893 | MS.gene80664:CDS |
| TCTGGCGCTACGTTTAGCAT+CGG | 0.662595 | 5.4:+64722222 | None:intergenic |
| CAGCACCAAGACTACGAGCA+GGG | 0.662928 | 5.4:+64721911 | None:intergenic |
| AGATTTGGAGATCTAAAAGG+TGG | 0.683343 | 5.4:-64722340 | MS.gene80664:CDS |
| TTACATGATCATTCCAACCA+AGG | 0.692776 | 5.4:+64721869 | None:intergenic |
| TGGCTCTGATTACGACCACG+TGG | 0.744746 | 5.4:+64721681 | None:intergenic |
| TCTTGCAGCACTATACCACG+TGG | 0.793900 | 5.4:-64721696 | MS.gene80664:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATAACTAATTATTTGTG+TGG | - | chr5.4:64722037-64722056 | MS.gene80664:intron | 15.0% |
| !! | ATTAATTATTATTCTTGTAG+TGG | - | chr5.4:64722316-64722335 | MS.gene80664:CDS | 15.0% |
| !! | CATTATTAAGTGTATATTGT+CGG | + | chr5.4:64722000-64722019 | None:intergenic | 20.0% |
| !!! | CTTATTTTATGAGTAGATTT+TGG | - | chr5.4:64722060-64722079 | MS.gene80664:intron | 20.0% |
| ! | TCAGATACTGGATATATAAT+TGG | - | chr5.4:64721964-64721983 | MS.gene80664:CDS | 25.0% |
| !!! | CTATTTTTATAGTCAGATAC+TGG | - | chr5.4:64721952-64721971 | MS.gene80664:CDS | 25.0% |
| ACAAGATTTGGAGATCTAAA+AGG | - | chr5.4:64721724-64721743 | MS.gene80664:CDS | 30.0% | |
| TAATACCAGTTCCAGTAATT+GGG | + | chr5.4:64722135-64722154 | None:intergenic | 30.0% | |
| TGATGGTTATGATTGATTGA+CGG | + | chr5.4:64721901-64721920 | None:intergenic | 30.0% | |
| TTAATACCAGTTCCAGTAAT+TGG | + | chr5.4:64722136-64722155 | None:intergenic | 30.0% | |
| TTTGAAGGAAAGACAAGATT+TGG | - | chr5.4:64721712-64721731 | MS.gene80664:CDS | 30.0% | |
| AGATTTGGAGATCTAAAAGG+TGG | - | chr5.4:64721727-64721746 | MS.gene80664:CDS | 35.0% | |
| ATTATCTTCAACAAGGACCT+TGG | - | chr5.4:64722181-64722200 | MS.gene80664:intron | 35.0% | |
| TGCTGCTATTATCTTCAACA+AGG | - | chr5.4:64722174-64722193 | MS.gene80664:intron | 35.0% | |
| TTACATGATCATTCCAACCA+AGG | + | chr5.4:64722201-64722220 | None:intergenic | 35.0% | |
| !! | ATTCTTGTAGTGGATCTTCA+GGG | - | chr5.4:64722326-64722345 | MS.gene80664:CDS | 35.0% |
| !! | TATTCTTGTAGTGGATCTTC+AGG | - | chr5.4:64722325-64722344 | MS.gene80664:CDS | 35.0% |
| ACTATCCCAATTACTGGAAC+TGG | - | chr5.4:64722127-64722146 | MS.gene80664:intron | 40.0% | |
| AGTTCCAGTAATTGGGATAG+TGG | + | chr5.4:64722128-64722147 | None:intergenic | 40.0% | |
| TGACGGTGTAAAGAGACTTA+CGG | + | chr5.4:64721884-64721903 | None:intergenic | 40.0% | |
| ! | TTTTGGCACCATTGCCAATT+GGG | - | chr5.4:64722077-64722096 | MS.gene80664:intron | 40.0% |
| !! | ATTTTGGCACCATTGCCAAT+TGG | - | chr5.4:64722076-64722095 | MS.gene80664:intron | 40.0% |
| !! | CAATGTTTGGGTGCTATTTG+TGG | - | chr5.4:64721670-64721689 | MS.gene80664:CDS | 40.0% |
| !! | GGTGTTGTGAAAGGTTTTGA+AGG | - | chr5.4:64721697-64721716 | MS.gene80664:CDS | 40.0% |
| !! | TCACTTTGACTTGAAGGGAA+TGG | + | chr5.4:64722409-64722428 | None:intergenic | 40.0% |
| AAGAACACAGCGAACCCAAT+TGG | + | chr5.4:64722094-64722113 | None:intergenic | 45.0% | |
| AATTGGGTTCGCTGTGTTCT+TGG | - | chr5.4:64722093-64722112 | MS.gene80664:intron | 45.0% | |
| ATTAACCCTGCTCGTAGTCT+TGG | - | chr5.4:64722151-64722170 | MS.gene80664:intron | 45.0% | |
| GACGGTGTAAAGAGACTTAC+GGG | + | chr5.4:64721883-64721902 | None:intergenic | 45.0% | |
| GCAAGAGCTGCTCCAATAAA+TGG | + | chr5.4:64722357-64722376 | None:intergenic | 45.0% | |
| GTAACCAGGAGCAACAAAGT+TGG | + | chr5.4:64721755-64721774 | None:intergenic | 45.0% | |
| TCTTCAACAAGGACCTTGGT+TGG | - | chr5.4:64722185-64722204 | MS.gene80664:intron | 45.0% | |
| TTCAGGGTGGGACCATTTAT+TGG | - | chr5.4:64722342-64722361 | MS.gene80664:CDS | 45.0% | |
| TTGGCCACTATCCCAATTAC+TGG | - | chr5.4:64722121-64722140 | MS.gene80664:intron | 45.0% | |
| ! | TACACCAAAGGTGATGGTCT+TGG | - | chr5.4:64721772-64721791 | MS.gene80664:intron | 45.0% |
| !! | GGTCTTGGTGCTGAAATTGT+TGG | - | chr5.4:64721787-64721806 | MS.gene80664:intron | 45.0% |
| !! | TTGTAGTGGATCTTCAGGGT+GGG | - | chr5.4:64722330-64722349 | MS.gene80664:CDS | 45.0% |
| !! | AAATATTTATAATAATTTGA+TGG | + | chr5.4:64721918-64721937 | None:intergenic | 5.0% |
| ACAGCGAACCCAATTGGCAA+TGG | + | chr5.4:64722088-64722107 | None:intergenic | 50.0% | |
| AGCACCAAGACCATCACCTT+TGG | + | chr5.4:64721779-64721798 | None:intergenic | 50.0% | |
| CCTGGTTACACCAAAGGTGA+TGG | - | chr5.4:64721766-64721785 | MS.gene80664:intron | 50.0% | |
| CGCTGTGTTCTTGGTTCACT+TGG | - | chr5.4:64722102-64722121 | MS.gene80664:intron | 50.0% | |
| GTTGCTCCTGGTTACACCAA+AGG | - | chr5.4:64721760-64721779 | MS.gene80664:intron | 50.0% | |
| TACGGGAACATGAGAGTCTC+TGG | + | chr5.4:64721866-64721885 | None:intergenic | 50.0% | |
| TCTGGCGCTACGTTTAGCAT+CGG | + | chr5.4:64721848-64721867 | None:intergenic | 50.0% | |
| TCTTGCAGCACTATACCACG+TGG | - | chr5.4:64722371-64722390 | MS.gene80664:CDS | 50.0% | |
| ! | CCATCACCTTTGGTGTAACC+AGG | + | chr5.4:64721769-64721788 | None:intergenic | 50.0% |
| !! | CTTGTAGTGGATCTTCAGGG+TGG | - | chr5.4:64722329-64722348 | MS.gene80664:CDS | 50.0% |
| !! | TGTGGTGCTGGTGTTGTGAA+AGG | - | chr5.4:64721688-64721707 | MS.gene80664:CDS | 50.0% |
| !! | TTGGGTGCTATTTGTGGTGC+TGG | - | chr5.4:64721676-64721695 | MS.gene80664:CDS | 50.0% |
| CAGCACCAAGACTACGAGCA+GGG | + | chr5.4:64722159-64722178 | None:intergenic | 55.0% | |
| GGTGCCAACTTTGTTGCTCC+TGG | - | chr5.4:64721748-64721767 | MS.gene80664:intron | 55.0% | |
| !! | AGCATCGGTGGCTGAGAAGA+CGG | + | chr5.4:64721833-64721852 | None:intergenic | 55.0% |
| !! | TGGCTCTGATTACGACCACG+TGG | + | chr5.4:64722389-64722408 | None:intergenic | 55.0% |
| GCAGCACCAAGACTACGAGC+AGG | + | chr5.4:64722160-64722179 | None:intergenic | 60.0% | |
| ! | GGCGCTACGTTTAGCATCGG+TGG | + | chr5.4:64721845-64721864 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 64721661 | 64722428 | 64721661 | ID=MS.gene80664 |
| chr5.4 | mRNA | 64721661 | 64722428 | 64721661 | ID=MS.gene80664.t1;Parent=MS.gene80664 |
| chr5.4 | exon | 64722213 | 64722428 | 64722213 | ID=MS.gene80664.t1.exon1;Parent=MS.gene80664.t1 |
| chr5.4 | CDS | 64722213 | 64722428 | 64722213 | ID=cds.MS.gene80664.t1;Parent=MS.gene80664.t1 |
| chr5.4 | exon | 64721873 | 64722013 | 64721873 | ID=MS.gene80664.t1.exon2;Parent=MS.gene80664.t1 |
| chr5.4 | CDS | 64721873 | 64722013 | 64721873 | ID=cds.MS.gene80664.t1;Parent=MS.gene80664.t1 |
| chr5.4 | exon | 64721661 | 64721753 | 64721661 | ID=MS.gene80664.t1.exon3;Parent=MS.gene80664.t1 |
| chr5.4 | CDS | 64721661 | 64721753 | 64721661 | ID=cds.MS.gene80664.t1;Parent=MS.gene80664.t1 |
| Gene Sequence |
| Protein sequence |
