Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055903.t1 | XP_003590467.1 | 100 | 341 | 0 | 0 | 1 | 341 | 1 | 341 | 8.40E-197 | 696 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055903.t1 | Q9LZG0 | 83.7 | 338 | 55 | 0 | 4 | 341 | 8 | 345 | 4.9e-169 | 595.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055903.t1 | G7IAA1 | 100.0 | 341 | 0 | 0 | 1 | 341 | 1 | 341 | 6.1e-197 | 696.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene46881 | MS.gene055903 | PPI |
| MS.gene055903 | MS.gene003877 | PPI |
| MS.gene85276 | MS.gene055903 | PPI |
| MS.gene032177 | MS.gene055903 | PPI |
| MS.gene055903 | MS.gene052011 | PPI |
| MS.gene056386 | MS.gene055903 | PPI |
| MS.gene98726 | MS.gene055903 | PPI |
| MS.gene28335 | MS.gene055903 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055903.t1 | MTR_1g064060 | 100.000 | 341 | 0 | 0 | 1 | 341 | 1 | 341 | 0.0 | 710 |
| MS.gene055903.t1 | MTR_4g461070 | 96.188 | 341 | 13 | 0 | 1 | 341 | 1 | 341 | 0.0 | 686 |
| MS.gene055903.t1 | MTR_1g064060 | 98.997 | 299 | 3 | 0 | 1 | 299 | 1 | 299 | 0.0 | 615 |
| MS.gene055903.t1 | MTR_3g112040 | 25.382 | 327 | 212 | 14 | 12 | 326 | 27 | 333 | 2.85e-12 | 67.4 |
| MS.gene055903.t1 | MTR_3g081400 | 63.636 | 44 | 13 | 1 | 263 | 306 | 34 | 74 | 2.27e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055903.t1 | AT5G03300 | 83.728 | 338 | 55 | 0 | 4 | 341 | 8 | 345 | 0.0 | 608 |
| MS.gene055903.t1 | AT3G09820 | 82.891 | 339 | 58 | 0 | 3 | 341 | 6 | 344 | 0.0 | 598 |
| MS.gene055903.t1 | AT5G03300 | 84.247 | 292 | 46 | 0 | 50 | 341 | 1 | 292 | 0.0 | 528 |
| MS.gene055903.t1 | AT5G03300 | 84.247 | 292 | 46 | 0 | 50 | 341 | 1 | 292 | 0.0 | 528 |
| MS.gene055903.t1 | AT3G09820 | 84.068 | 295 | 47 | 0 | 47 | 341 | 8 | 302 | 0.0 | 526 |
| MS.gene055903.t1 | AT1G19600 | 25.904 | 332 | 217 | 14 | 14 | 336 | 23 | 334 | 6.87e-13 | 69.3 |
| MS.gene055903.t1 | AT4G27600 | 23.962 | 313 | 209 | 10 | 7 | 308 | 123 | 417 | 1.50e-11 | 65.5 |
Find 90 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTGAAGCAACCTGAAAAT+TGG | 0.153678 | 1.1:-48408879 | MS.gene055903:CDS |
| ACCAGCTTGTTTAGAGTTCT+TGG | 0.208302 | 1.1:+48409289 | None:intergenic |
| CATTCTGGGATTCAGGTATA+TGG | 0.238438 | 1.1:-48408441 | MS.gene055903:intron |
| GCAATTTGCAGCTGATAAAT+TGG | 0.245347 | 1.1:+48408915 | None:intergenic |
| GTATCAACTAATTTCTCTTT+AGG | 0.253965 | 1.1:+48408119 | None:intergenic |
| TCTTTAGGTAATAGTATAAC+AGG | 0.271758 | 1.1:+48408134 | None:intergenic |
| GCCAAATATTTCTATATTGC+TGG | 0.282337 | 1.1:-48408743 | MS.gene055903:CDS |
| GCCAGCAATATAGAAATATT+TGG | 0.289493 | 1.1:+48408742 | None:intergenic |
| GCAACTAATTGAATGGATTC+AGG | 0.289892 | 1.1:+48408701 | None:intergenic |
| AATGTACTCCACATTATATT+TGG | 0.297073 | 1.1:+48409628 | None:intergenic |
| TAATGAAAATCAGGCTTCTC+TGG | 0.314330 | 1.1:+48407819 | None:intergenic |
| TTGAAGAACTCACAGATAAA+TGG | 0.330705 | 1.1:+48408552 | None:intergenic |
| CAGTGGATGCTTCAAGTTCC+CGG | 0.330838 | 1.1:-48409365 | MS.gene055903:CDS |
| TGGAGGATTTCTTTCACAAT+TGG | 0.357365 | 1.1:-48407925 | MS.gene055903:CDS |
| GCTCTAACACATTCTTCAAT+AGG | 0.364935 | 1.1:+48407891 | None:intergenic |
| ATTTCTTTCACAATTGGTTC+AGG | 0.365115 | 1.1:-48407919 | MS.gene055903:CDS |
| TTGCGTGCCTCTGATGCCTT+TGG | 0.366644 | 1.1:+48408227 | None:intergenic |
| CGAGAATGGCATTGTTCAAC+TGG | 0.377377 | 1.1:+48410357 | None:intergenic |
| ACTTGTGCTGTTTGTGTGGT+TGG | 0.384223 | 1.1:-48409125 | MS.gene055903:CDS |
| CAACCTGAAAATTGGGCATT+AGG | 0.392212 | 1.1:-48408871 | MS.gene055903:intron |
| TTTGTAGGAGATGCCTTTGT+TGG | 0.393317 | 1.1:-48407945 | MS.gene055903:intron |
| AGAATCACTTAATGAAAATC+AGG | 0.407857 | 1.1:+48407810 | None:intergenic |
| GGAAGGTGTTCTTCTCGGTA+TGG | 0.414489 | 1.1:-48410546 | MS.gene055903:CDS |
| ATTTATCTGTGAGTTCTTCA+AGG | 0.418473 | 1.1:-48408550 | MS.gene055903:CDS |
| GGTAAGTGCAGCCAGACCTT+TGG | 0.421838 | 1.1:+48407841 | None:intergenic |
| TTTGAAGCAACCTGAAAATT+GGG | 0.422949 | 1.1:-48408878 | MS.gene055903:CDS |
| TACCTCCCAGCCATGAACTT+TGG | 0.426161 | 1.1:+48408379 | None:intergenic |
| TGCATCGGAAAGGACAAGTT+TGG | 0.428579 | 1.1:-48409323 | MS.gene055903:CDS |
| GTGCTTATCTTCAGCGAGAA+TGG | 0.430170 | 1.1:+48410343 | None:intergenic |
| GCGTTGGAAGGTGTTCTTCT+CGG | 0.431372 | 1.1:-48410551 | MS.gene055903:CDS |
| TATAATGTGGAGTACATTGC+TGG | 0.440841 | 1.1:-48409623 | MS.gene055903:CDS |
| GTGCTACTCAGAATTCAATC+AGG | 0.452939 | 1.1:-48409490 | MS.gene055903:CDS |
| GTAGGAGATGCCTTTGTTGG+AGG | 0.455368 | 1.1:-48407942 | MS.gene055903:intron |
| CCATCTTGAGCAACACATAC+AGG | 0.457801 | 1.1:+48408173 | None:intergenic |
| ACCAATGTAACTAGTGGCCC+CGG | 0.467806 | 1.1:+48409346 | None:intergenic |
| GAATTCAATCAGGGTTGCTC+AGG | 0.472160 | 1.1:-48409480 | MS.gene055903:intron |
| AGTGGATGCTTCAAGTTCCC+GGG | 0.474413 | 1.1:-48409364 | MS.gene055903:CDS |
| GTTATTTGCTGCGGCATGCT+CGG | 0.475346 | 1.1:+48408679 | None:intergenic |
| TTTGTGTGGTTGGTGGTGAA+AGG | 0.492976 | 1.1:-48409115 | MS.gene055903:intron |
| CAACTAATTGAATGGATTCA+GGG | 0.497187 | 1.1:+48408702 | None:intergenic |
| TAGGGCAATACCCGCTCCAT+TGG | 0.506540 | 1.1:+48408097 | None:intergenic |
| TCCATCAATAATAATGGCGT+TGG | 0.508293 | 1.1:-48410567 | None:intergenic |
| AATGTTATCATCCAAAGGTC+TGG | 0.508644 | 1.1:-48407852 | MS.gene055903:CDS |
| TGGATTCAGGGGATACAGTA+AGG | 0.509166 | 1.1:+48408714 | None:intergenic |
| AGGCATCAGAGGCACGCAAA+AGG | 0.511205 | 1.1:-48408223 | MS.gene055903:CDS |
| GAAGGTGTTCTTCTCGGTAT+GGG | 0.511845 | 1.1:-48410545 | MS.gene055903:CDS |
| CCCGGGGCCACTAGTTACAT+TGG | 0.515125 | 1.1:-48409347 | MS.gene055903:CDS |
| CCTGTATGTGTTGCTCAAGA+TGG | 0.516299 | 1.1:-48408173 | MS.gene055903:CDS |
| TGTGCTGTTTGTGTGGTTGG+TGG | 0.518619 | 1.1:-48409122 | MS.gene055903:CDS |
| TACGGCAGAGCTTTCTCCTG+TGG | 0.523507 | 1.1:+48408525 | None:intergenic |
| AATGAAAATCAGGCTTCTCT+GGG | 0.526760 | 1.1:+48407820 | None:intergenic |
| GAGAAATTAGTTGATACCAA+TGG | 0.529177 | 1.1:-48408113 | MS.gene055903:CDS |
| ATTGAAGAATGTGTTAGAGC+TGG | 0.541729 | 1.1:-48407888 | MS.gene055903:CDS |
| ATCAGCTGCAAATTGCTACA+AGG | 0.544149 | 1.1:-48408908 | MS.gene055903:CDS |
| TGAGTTCTTCAAGGATCCAC+AGG | 0.550028 | 1.1:-48408541 | MS.gene055903:CDS |
| GAAGATGAGAATACACCTAC+AGG | 0.551303 | 1.1:-48409149 | MS.gene055903:CDS |
| ATGCTCGGCAACTAATTGAA+TGG | 0.551334 | 1.1:+48408694 | None:intergenic |
| GACAGCAGAGATGTCGAGAA+GGG | 0.553853 | 1.1:+48410517 | None:intergenic |
| CGACAGCAGAGATGTCGAGA+AGG | 0.554336 | 1.1:+48410516 | None:intergenic |
| CACAGATAAATGGTGCAGAA+AGG | 0.555052 | 1.1:+48408562 | None:intergenic |
| AGGAACTTGTGCTGTTTGTG+TGG | 0.555282 | 1.1:-48409129 | MS.gene055903:CDS |
| TTAGTTGATACCAATGGAGC+GGG | 0.564269 | 1.1:-48408107 | MS.gene055903:intron |
| CTGTATGTGTTGCTCAAGAT+GGG | 0.565196 | 1.1:-48408172 | MS.gene055903:CDS |
| ACTAGTTACATTGGTTGCAT+CGG | 0.569490 | 1.1:-48409338 | MS.gene055903:CDS |
| TTACATTGGTTGCATCGGAA+AGG | 0.571263 | 1.1:-48409333 | MS.gene055903:CDS |
| ACCAAGAACTCTAAACAAGC+TGG | 0.574572 | 1.1:-48409290 | MS.gene055903:CDS |
| TCTAACCTTGTTATTTGCTG+CGG | 0.578850 | 1.1:+48408670 | None:intergenic |
| TGAAAGAAATCCTCCAACAA+AGG | 0.578951 | 1.1:+48407932 | None:intergenic |
| TCAATAATAATGGCGTTGGA+AGG | 0.596173 | 1.1:-48410563 | None:intergenic |
| TCAGTTGCCAAAGGCATCAG+AGG | 0.601463 | 1.1:-48408234 | MS.gene055903:CDS |
| CAGCAAATGTTATCATCCAA+AGG | 0.601761 | 1.1:-48407857 | MS.gene055903:CDS |
| AAAGATATCTCAGTTGCCAA+AGG | 0.604898 | 1.1:-48408243 | MS.gene055903:CDS |
| AACTAATTGAATGGATTCAG+GGG | 0.625445 | 1.1:+48408703 | None:intergenic |
| TGCTACTCAGAATTCAATCA+GGG | 0.630239 | 1.1:-48409489 | MS.gene055903:CDS |
| TTGAAGAATGTGTTAGAGCT+GGG | 0.630423 | 1.1:-48407887 | MS.gene055903:CDS |
| AAGGATTACTGTTATCACAC+AGG | 0.637867 | 1.1:-48408204 | MS.gene055903:CDS |
| ACAGCAGAGATGTCGAGAAG+GGG | 0.640848 | 1.1:+48410518 | None:intergenic |
| CTTTAGGTAATAGTATAACA+GGG | 0.644006 | 1.1:+48408135 | None:intergenic |
| ATTAGTTGATACCAATGGAG+CGG | 0.647030 | 1.1:-48408108 | MS.gene055903:CDS |
| TTCCAAAGTTCATGGCTGGG+AGG | 0.650106 | 1.1:-48408381 | MS.gene055903:intron |
| CGGAAAGGACAAGTTTGGTG+AGG | 0.653563 | 1.1:-48409318 | MS.gene055903:CDS |
| GATGCAACCAATGTAACTAG+TGG | 0.655384 | 1.1:+48409340 | None:intergenic |
| CCAATGTAACTAGTGGCCCC+GGG | 0.655549 | 1.1:+48409347 | None:intergenic |
| CAAACAGCACAAGTTCCTGT+AGG | 0.659898 | 1.1:+48409134 | None:intergenic |
| GCATGCCGCAGCAAATAACA+AGG | 0.662561 | 1.1:-48408675 | MS.gene055903:intron |
| AGGATTACTGTTATCACACA+GGG | 0.665946 | 1.1:-48408203 | MS.gene055903:CDS |
| GTGGATGCTTCAAGTTCCCG+GGG | 0.678166 | 1.1:-48409363 | MS.gene055903:CDS |
| AATGGCTGCCAAATATAATG+TGG | 0.689459 | 1.1:-48409636 | MS.gene055903:CDS |
| AATGTGGAGTACATTGCTGG+AGG | 0.697669 | 1.1:-48409620 | MS.gene055903:intron |
| TGACCAGACTGAAAATGTTG+AGG | 0.699871 | 1.1:-48408276 | MS.gene055903:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTCTAATTTATCTTTA+CGG | - | chr1.1:48409903-48409922 | MS.gene055903:intron | 10.0% |
| !! | AATTAAATACAAAAAGCAAT+AGG | + | chr1.1:48410297-48410316 | None:intergenic | 15.0% |
| !! | ATTAAATACAAAAAGCAATA+GGG | + | chr1.1:48410296-48410315 | None:intergenic | 15.0% |
| !! | TTTCTAAATACTAAAACAAA+AGG | + | chr1.1:48408653-48408672 | None:intergenic | 15.0% |
| !!! | GTAATTTCTTTTATATTAGT+TGG | - | chr1.1:48408927-48408946 | MS.gene055903:CDS | 15.0% |
| !!! | TTTATGATTTTTCTTTTTTC+AGG | - | chr1.1:48408860-48408879 | MS.gene055903:intron | 15.0% |
| !!! | TTTTTAATAAATAGTTGAGA+AGG | - | chr1.1:48409607-48409626 | MS.gene055903:intron | 15.0% |
| !! | AACCTATTCATTTAAAAACT+AGG | - | chr1.1:48409189-48409208 | MS.gene055903:intron | 20.0% |
| !! | ATTAGATGCAATAAAAAAGA+AGG | + | chr1.1:48409421-48409440 | None:intergenic | 20.0% |
| !! | TAATTTGAATTTGACAGTTT+AGG | + | chr1.1:48409878-48409897 | None:intergenic | 20.0% |
| !!! | AACCTAGTTTTTAAATGAAT+AGG | + | chr1.1:48409194-48409213 | None:intergenic | 20.0% |
| !!! | ATGATAAGCTATTTTTACAA+CGG | + | chr1.1:48408970-48408989 | None:intergenic | 20.0% |
| !!! | TTCTTATTCGAAGTATTAAA+GGG | - | chr1.1:48409308-48409327 | MS.gene055903:CDS | 20.0% |
| !!! | TTCTTTTCTTCTATTTTTGT+AGG | - | chr1.1:48410412-48410431 | MS.gene055903:intron | 20.0% |
| !!! | TTTCTTATTCGAAGTATTAA+AGG | - | chr1.1:48409307-48409326 | MS.gene055903:CDS | 20.0% |
| !!! | TTTTGATGTGATGTAATAAT+TGG | - | chr1.1:48408566-48408585 | MS.gene055903:CDS | 20.0% |
| !!! | TTTTTATTGCATCTAATTGT+AGG | - | chr1.1:48409424-48409443 | MS.gene055903:intron | 20.0% |
| ! | AATGATAAATTCACCTTGAA+TGG | + | chr1.1:48410369-48410388 | None:intergenic | 25.0% |
| ! | AATGTACTCCACATTATATT+TGG | + | chr1.1:48408747-48408766 | None:intergenic | 25.0% |
| ! | AATTTCAGAACTAGATTCAA+CGG | + | chr1.1:48409169-48409188 | None:intergenic | 25.0% |
| ! | ATCACATCAAAACCTTAATT+AGG | + | chr1.1:48408558-48408577 | None:intergenic | 25.0% |
| ! | ATGATAAATTCACCTTGAAT+GGG | + | chr1.1:48410368-48410387 | None:intergenic | 25.0% |
| ! | CACAACTACATAAATAACTT+TGG | + | chr1.1:48410325-48410344 | None:intergenic | 25.0% |
| ! | CTTTAGGTAATAGTATAACA+GGG | + | chr1.1:48410240-48410259 | None:intergenic | 25.0% |
| ! | GTATCAACTAATTTCTCTTT+AGG | + | chr1.1:48410256-48410275 | None:intergenic | 25.0% |
| ! | TAGAAAAAAAATCCCATTCA+AGG | - | chr1.1:48410353-48410372 | MS.gene055903:CDS | 25.0% |
| ! | TCTTTAGGTAATAGTATAAC+AGG | + | chr1.1:48410241-48410260 | None:intergenic | 25.0% |
| ! | TTCAAACAACGAAAATAAAC+TGG | + | chr1.1:48408224-48408243 | None:intergenic | 25.0% |
| ! | TTCGAATAAGAAAAAATGCA+AGG | + | chr1.1:48409300-48409319 | None:intergenic | 25.0% |
| ! | TTTCATTTAGTAACTCATCT+TGG | - | chr1.1:48410061-48410080 | MS.gene055903:intron | 25.0% |
| !! | ATCAAATACTTCTAGTTGAA+AGG | + | chr1.1:48409749-48409768 | None:intergenic | 25.0% |
| !! | ATTTTTACATCTCTCAGTTT+TGG | - | chr1.1:48408595-48408614 | MS.gene055903:intron | 25.0% |
| !! | CTAGAACTAGAATGTATTTT+AGG | - | chr1.1:48408467-48408486 | MS.gene055903:intron | 25.0% |
| !! | TCAAATACTTCTAGTTGAAA+GGG | + | chr1.1:48409748-48409767 | None:intergenic | 25.0% |
| !!! | AAAAATGTTACTTTCCTTTC+TGG | + | chr1.1:48408831-48408850 | None:intergenic | 25.0% |
| !!! | TCGTTTTCAATTTGATTTAC+AGG | - | chr1.1:48407984-48408003 | MS.gene055903:intron | 25.0% |
| !!! | TGTATTTTTGAAATATGCGT+AGG | - | chr1.1:48408140-48408159 | MS.gene055903:CDS | 25.0% |
| AATGTAAAAGCAAAACTGCA+AGG | + | chr1.1:48410043-48410062 | None:intergenic | 30.0% | |
| AGCAGAGATCAAAACAAATA+AGG | + | chr1.1:48408292-48408311 | None:intergenic | 30.0% | |
| ATATAATCACAAGTGTCAGT+CGG | + | chr1.1:48408344-48408363 | None:intergenic | 30.0% | |
| ATGTAAAAGCAAAACTGCAA+GGG | + | chr1.1:48410042-48410061 | None:intergenic | 30.0% | |
| ATTTATCTGTGAGTTCTTCA+AGG | - | chr1.1:48409822-48409841 | MS.gene055903:intron | 30.0% | |
| CATCAAAACCTTAATTAGGT+AGG | + | chr1.1:48408554-48408573 | None:intergenic | 30.0% | |
| GAGACAAACATTAGAATACA+CGG | - | chr1.1:48408164-48408183 | MS.gene055903:CDS | 30.0% | |
| GATGTGATGTAATAATTGGT+TGG | - | chr1.1:48408570-48408589 | MS.gene055903:CDS | 30.0% | |
| GATTTATTGTGTTTCCAGAA+AGG | - | chr1.1:48408814-48408833 | MS.gene055903:intron | 30.0% | |
| GCCAGCAATATAGAAATATT+TGG | + | chr1.1:48409633-48409652 | None:intergenic | 30.0% | |
| GTAAACATCCTACCTAATTA+AGG | - | chr1.1:48408543-48408562 | MS.gene055903:CDS | 30.0% | |
| TCATCAAGATGACTAACATT+TGG | - | chr1.1:48409573-48409592 | MS.gene055903:intron | 30.0% | |
| TTGAAGAACTCACAGATAAA+TGG | + | chr1.1:48409823-48409842 | None:intergenic | 30.0% | |
| TTTGTATTTGCTTCTTACAG+TGG | - | chr1.1:48408990-48409009 | MS.gene055903:intron | 30.0% | |
| ! | AACTAATTGAATGGATTCAG+GGG | + | chr1.1:48409672-48409691 | None:intergenic | 30.0% |
| ! | AGAACATTTTCCAAAGTTCA+TGG | - | chr1.1:48409983-48410002 | MS.gene055903:intron | 30.0% |
| ! | ATTTCTTTCACAATTGGTTC+AGG | - | chr1.1:48410453-48410472 | MS.gene055903:intron | 30.0% |
| ! | ATTTGAAGCAACCTGAAAAT+TGG | - | chr1.1:48409493-48409512 | MS.gene055903:CDS | 30.0% |
| ! | CAACTAATTGAATGGATTCA+GGG | + | chr1.1:48409673-48409692 | None:intergenic | 30.0% |
| ! | GAGAAATTAGTTGATACCAA+TGG | - | chr1.1:48410259-48410278 | MS.gene055903:intron | 30.0% |
| ! | GCCAAATATTTCTATATTGC+TGG | - | chr1.1:48409629-48409648 | MS.gene055903:CDS | 30.0% |
| ! | TCTGTATCTGTGTTTCATTT+TGG | - | chr1.1:48408399-48408418 | MS.gene055903:CDS | 30.0% |
| ! | TTGACAGTTTAGGATTCTTA+CGG | + | chr1.1:48409868-48409887 | None:intergenic | 30.0% |
| ! | TTTGAAGCAACCTGAAAATT+GGG | - | chr1.1:48409494-48409513 | MS.gene055903:intron | 30.0% |
| !! | AGGTATATGGACTATGTTTT+TGG | - | chr1.1:48409944-48409963 | MS.gene055903:intron | 30.0% |
| !!! | AATTTTCAGGTTGCTTCAAA+TGG | + | chr1.1:48409494-48409513 | None:intergenic | 30.0% |
| !!! | TATGATCCTACGATTTTTTC+AGG | - | chr1.1:48408705-48408724 | MS.gene055903:CDS | 30.0% |
| !!! | TTTTTTCAGGTACGATGAAA+TGG | - | chr1.1:48408718-48408737 | MS.gene055903:CDS | 30.0% |
| AAAGATATCTCAGTTGCCAA+AGG | - | chr1.1:48410129-48410148 | MS.gene055903:intron | 35.0% | |
| AAGGATTACTGTTATCACAC+AGG | - | chr1.1:48410168-48410187 | MS.gene055903:intron | 35.0% | |
| AATGAAAATCAGGCTTCTCT+GGG | + | chr1.1:48410555-48410574 | None:intergenic | 35.0% | |
| AATGGCTGCCAAATATAATG+TGG | - | chr1.1:48408736-48408755 | MS.gene055903:CDS | 35.0% | |
| AATGTTATCATCCAAAGGTC+TGG | - | chr1.1:48410520-48410539 | MS.gene055903:CDS | 35.0% | |
| ACAAACATTAGAATACACGG+TGG | - | chr1.1:48408167-48408186 | MS.gene055903:CDS | 35.0% | |
| AGATACTGAACAGATCAACA+AGG | + | chr1.1:48409529-48409548 | None:intergenic | 35.0% | |
| AGGATTACTGTTATCACACA+GGG | - | chr1.1:48410169-48410188 | MS.gene055903:intron | 35.0% | |
| ATCGTACCTGAAAAAATCGT+AGG | + | chr1.1:48408714-48408733 | None:intergenic | 35.0% | |
| ATCTTTACGGATTTGCATTC+TGG | - | chr1.1:48409916-48409935 | MS.gene055903:intron | 35.0% | |
| ATTGAAGAATGTGTTAGAGC+TGG | - | chr1.1:48410484-48410503 | MS.gene055903:intron | 35.0% | |
| CAGCAAATGTTATCATCCAA+AGG | - | chr1.1:48410515-48410534 | MS.gene055903:CDS | 35.0% | |
| GCAATTTGCAGCTGATAAAT+TGG | + | chr1.1:48409460-48409479 | None:intergenic | 35.0% | |
| GCTCTAACACATTCTTCAAT+AGG | + | chr1.1:48410484-48410503 | None:intergenic | 35.0% | |
| TAATGAAAATCAGGCTTCTC+TGG | + | chr1.1:48410556-48410575 | None:intergenic | 35.0% | |
| TATAATCACAAGTGTCAGTC+GGG | + | chr1.1:48408343-48408362 | None:intergenic | 35.0% | |
| TATAATGTGGAGTACATTGC+TGG | - | chr1.1:48408749-48408768 | MS.gene055903:CDS | 35.0% | |
| TCTTTACGGATTTGCATTCT+GGG | - | chr1.1:48409917-48409936 | MS.gene055903:intron | 35.0% | |
| TGAAAGAAATCCTCCAACAA+AGG | + | chr1.1:48410443-48410462 | None:intergenic | 35.0% | |
| TGCTACTCAGAATTCAATCA+GGG | - | chr1.1:48408883-48408902 | MS.gene055903:CDS | 35.0% | |
| TGGAGGATTTCTTTCACAAT+TGG | - | chr1.1:48410447-48410466 | MS.gene055903:intron | 35.0% | |
| TTGAAGAATGTGTTAGAGCT+GGG | - | chr1.1:48410485-48410504 | MS.gene055903:intron | 35.0% | |
| ! | ACTAGTTACATTGGTTGCAT+CGG | - | chr1.1:48409034-48409053 | MS.gene055903:intron | 35.0% |
| ! | ATACTTCTAGTTGAAAGGGA+AGG | + | chr1.1:48409744-48409763 | None:intergenic | 35.0% |
| ! | ATTAGTTGATACCAATGGAG+CGG | - | chr1.1:48410264-48410283 | MS.gene055903:intron | 35.0% |
| ! | ATTTTCCAAAGTTCATGGCT+GGG | - | chr1.1:48409988-48410007 | MS.gene055903:intron | 35.0% |
| ! | GCAACTAATTGAATGGATTC+AGG | + | chr1.1:48409674-48409693 | None:intergenic | 35.0% |
| ! | GTTGTGCTAGAATGCTATTT+AGG | - | chr1.1:48408249-48408268 | MS.gene055903:CDS | 35.0% |
| !! | TCTAACCTTGTTATTTGCTG+CGG | + | chr1.1:48409705-48409724 | None:intergenic | 35.0% |
| AACATTAGAATACACGGTGG+CGG | - | chr1.1:48408170-48408189 | MS.gene055903:CDS | 40.0% | |
| ACCAAGAACTCTAAACAAGC+TGG | - | chr1.1:48409082-48409101 | MS.gene055903:intron | 40.0% | |
| AGTATCTTACTCCCTTGTGA+AGG | - | chr1.1:48409774-48409793 | MS.gene055903:intron | 40.0% | |
| ATCAGCTGCAAATTGCTACA+AGG | - | chr1.1:48409464-48409483 | MS.gene055903:intron | 40.0% | |
| ATGCTCGGCAACTAATTGAA+TGG | + | chr1.1:48409681-48409700 | None:intergenic | 40.0% | |
| CAACCTGAAAATTGGGCATT+AGG | - | chr1.1:48409501-48409520 | MS.gene055903:intron | 40.0% | |
| CACAGATAAATGGTGCAGAA+AGG | + | chr1.1:48409813-48409832 | None:intergenic | 40.0% | |
| CATCATGAAGACCTTCACAA+GGG | + | chr1.1:48409788-48409807 | None:intergenic | 40.0% | |
| GAAGATGAGAATACACCTAC+AGG | - | chr1.1:48409223-48409242 | MS.gene055903:intron | 40.0% | |
| GATGCAACCAATGTAACTAG+TGG | + | chr1.1:48409035-48409054 | None:intergenic | 40.0% | |
| TCATCATGAAGACCTTCACA+AGG | + | chr1.1:48409789-48409808 | None:intergenic | 40.0% | |
| TGACCAGACTGAAAATGTTG+AGG | - | chr1.1:48410096-48410115 | MS.gene055903:intron | 40.0% | |
| TTTGTAGGAGATGCCTTTGT+TGG | - | chr1.1:48410427-48410446 | MS.gene055903:intron | 40.0% | |
| ! | ACATTTTCAGTCTGGTCAAC+AGG | + | chr1.1:48410094-48410113 | None:intergenic | 40.0% |
| ! | ACCAGCTTGTTTAGAGTTCT+TGG | + | chr1.1:48409086-48409105 | None:intergenic | 40.0% |
| ! | CATTTTCCAAAGTTCATGGC+TGG | - | chr1.1:48409987-48410006 | MS.gene055903:intron | 40.0% |
| ! | CTGTATGTGTTGCTCAAGAT+GGG | - | chr1.1:48410200-48410219 | MS.gene055903:intron | 40.0% |
| ! | GTACCTAATGCCCAATTTTC+AGG | + | chr1.1:48409507-48409526 | None:intergenic | 40.0% |
| ! | GTGCTACTCAGAATTCAATC+AGG | - | chr1.1:48408882-48408901 | MS.gene055903:CDS | 40.0% |
| ! | TCTCCTCAACATTTTCAGTC+TGG | + | chr1.1:48410102-48410121 | None:intergenic | 40.0% |
| ! | TGTGTGAGTCTTTGAGAGTT+TGG | - | chr1.1:48408521-48408540 | MS.gene055903:intron | 40.0% |
| ! | TTACATTGGTTGCATCGGAA+AGG | - | chr1.1:48409039-48409058 | MS.gene055903:intron | 40.0% |
| ! | TTAGTTGATACCAATGGAGC+GGG | - | chr1.1:48410265-48410284 | MS.gene055903:intron | 40.0% |
| !! | CATTCTGGGATTCAGGTATA+TGG | - | chr1.1:48409931-48409950 | MS.gene055903:intron | 40.0% |
| AATGTGGAGTACATTGCTGG+AGG | - | chr1.1:48408752-48408771 | MS.gene055903:CDS | 45.0% | |
| CAAACAGCACAAGTTCCTGT+AGG | + | chr1.1:48409241-48409260 | None:intergenic | 45.0% | |
| CAGAACTAGATTCAACGGTC+CGG | + | chr1.1:48409164-48409183 | None:intergenic | 45.0% | |
| CCATCTTGAGCAACACATAC+AGG | + | chr1.1:48410202-48410221 | None:intergenic | 45.0% | |
| CGAGAATGGCATTGTTCAAC+TGG | + | chr1.1:48408018-48408037 | None:intergenic | 45.0% | |
| GAATTCAATCAGGGTTGCTC+AGG | - | chr1.1:48408892-48408911 | MS.gene055903:CDS | 45.0% | |
| GCACAGACACTTATGATCGA+AGG | - | chr1.1:48408312-48408331 | MS.gene055903:intron | 45.0% | |
| GTGCTTATCTTCAGCGAGAA+TGG | + | chr1.1:48408032-48408051 | None:intergenic | 45.0% | |
| TGAGTTCTTCAAGGATCCAC+AGG | - | chr1.1:48409831-48409850 | MS.gene055903:intron | 45.0% | |
| TGCATCGGAAAGGACAAGTT+TGG | - | chr1.1:48409049-48409068 | MS.gene055903:intron | 45.0% | |
| TGGATTCAGGGGATACAGTA+AGG | + | chr1.1:48409661-48409680 | None:intergenic | 45.0% | |
| ! | CCTGTATGTGTTGCTCAAGA+TGG | - | chr1.1:48410199-48410218 | MS.gene055903:intron | 45.0% |
| !! | ACTTGTGCTGTTTGTGTGGT+TGG | - | chr1.1:48409247-48409266 | MS.gene055903:intron | 45.0% |
| !! | AGGAACTTGTGCTGTTTGTG+TGG | - | chr1.1:48409243-48409262 | MS.gene055903:intron | 45.0% |
| !! | GAAGGTGTTCTTCTCGGTAT+GGG | - | chr1.1:48407827-48407846 | MS.gene055903:CDS | 45.0% |
| !! | GGATTTGCATTCTGGGATTC+AGG | - | chr1.1:48409924-48409943 | MS.gene055903:intron | 45.0% |
| !! | TTTGTGTGGTTGGTGGTGAA+AGG | - | chr1.1:48409257-48409276 | MS.gene055903:intron | 45.0% |
| !! | TTTTGGTTGTCTGAGCTGTC+AGG | - | chr1.1:48408416-48408435 | MS.gene055903:CDS | 45.0% |
| ACAGCAGAGATGTCGAGAAG+GGG | + | chr1.1:48407857-48407876 | None:intergenic | 50.0% | |
| ACCAATGTAACTAGTGGCCC+CGG | + | chr1.1:48409029-48409048 | None:intergenic | 50.0% | |
| GACAGCAGAGATGTCGAGAA+GGG | + | chr1.1:48407858-48407877 | None:intergenic | 50.0% | |
| GCATGCCGCAGCAAATAACA+AGG | - | chr1.1:48409697-48409716 | MS.gene055903:intron | 50.0% | |
| GTAGGAGATGCCTTTGTTGG+AGG | - | chr1.1:48410430-48410449 | MS.gene055903:intron | 50.0% | |
| TACCTCCCAGCCATGAACTT+TGG | + | chr1.1:48409996-48410015 | None:intergenic | 50.0% | |
| TTCCAAAGTTCATGGCTGGG+AGG | - | chr1.1:48409991-48410010 | MS.gene055903:intron | 50.0% | |
| TTCGATCTGCTGCACTGTAC+CGG | - | chr1.1:48409142-48409161 | MS.gene055903:CDS | 50.0% | |
| ! | AGTGGATGCTTCAAGTTCCC+GGG | - | chr1.1:48409008-48409027 | MS.gene055903:intron | 50.0% |
| ! | CAGTGGATGCTTCAAGTTCC+CGG | - | chr1.1:48409007-48409026 | MS.gene055903:intron | 50.0% |
| ! | CGGAAAGGACAAGTTTGGTG+AGG | - | chr1.1:48409054-48409073 | MS.gene055903:intron | 50.0% |
| ! | GTTATTTGCTGCGGCATGCT+CGG | + | chr1.1:48409696-48409715 | None:intergenic | 50.0% |
| !! | GCGTTGGAAGGTGTTCTTCT+CGG | - | chr1.1:48407821-48407840 | MS.gene055903:CDS | 50.0% |
| !! | GGAAGGTGTTCTTCTCGGTA+TGG | - | chr1.1:48407826-48407845 | MS.gene055903:CDS | 50.0% |
| !! | GGTTGGTGGTGAAAGGTAAG+AGG | - | chr1.1:48409264-48409283 | MS.gene055903:intron | 50.0% |
| !! | TCAGTTGCCAAAGGCATCAG+AGG | - | chr1.1:48410138-48410157 | MS.gene055903:intron | 50.0% |
| !! | TGTGCTGTTTGTGTGGTTGG+TGG | - | chr1.1:48409250-48409269 | MS.gene055903:intron | 50.0% |
| CCAATGTAACTAGTGGCCCC+GGG | + | chr1.1:48409028-48409047 | None:intergenic | 55.0% | |
| CGACAGCAGAGATGTCGAGA+AGG | + | chr1.1:48407859-48407878 | None:intergenic | 55.0% | |
| GGTAAGTGCAGCCAGACCTT+TGG | + | chr1.1:48410534-48410553 | None:intergenic | 55.0% | |
| TACGGCAGAGCTTTCTCCTG+TGG | + | chr1.1:48409850-48409869 | None:intergenic | 55.0% | |
| TAGGGCAATACCCGCTCCAT+TGG | + | chr1.1:48410278-48410297 | None:intergenic | 55.0% | |
| TTGCGTGCCTCTGATGCCTT+TGG | + | chr1.1:48410148-48410167 | None:intergenic | 55.0% | |
| ! | AGGCATCAGAGGCACGCAAA+AGG | - | chr1.1:48410149-48410168 | MS.gene055903:intron | 55.0% |
| ! | GTGGATGCTTCAAGTTCCCG+GGG | - | chr1.1:48409009-48409028 | MS.gene055903:intron | 55.0% |
| CCCGGGGCCACTAGTTACAT+TGG | - | chr1.1:48409025-48409044 | MS.gene055903:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 48407818 | 48410576 | 48407818 | ID=MS.gene055903 |
| chr1.1 | mRNA | 48407818 | 48410576 | 48407818 | ID=MS.gene055903.t1;Parent=MS.gene055903 |
| chr1.1 | exon | 48410494 | 48410576 | 48410494 | ID=MS.gene055903.t1.exon1;Parent=MS.gene055903.t1 |
| chr1.1 | CDS | 48410494 | 48410576 | 48410494 | ID=cds.MS.gene055903.t1;Parent=MS.gene055903.t1 |
| chr1.1 | exon | 48410335 | 48410388 | 48410335 | ID=MS.gene055903.t1.exon2;Parent=MS.gene055903.t1 |
| chr1.1 | CDS | 48410335 | 48410388 | 48410335 | ID=cds.MS.gene055903.t1;Parent=MS.gene055903.t1 |
| chr1.1 | exon | 48409621 | 48409667 | 48409621 | ID=MS.gene055903.t1.exon3;Parent=MS.gene055903.t1 |
| chr1.1 | CDS | 48409621 | 48409667 | 48409621 | ID=cds.MS.gene055903.t1;Parent=MS.gene055903.t1 |
| chr1.1 | exon | 48409481 | 48409512 | 48409481 | ID=MS.gene055903.t1.exon4;Parent=MS.gene055903.t1 |
| chr1.1 | CDS | 48409481 | 48409512 | 48409481 | ID=cds.MS.gene055903.t1;Parent=MS.gene055903.t1 |
| chr1.1 | exon | 48409283 | 48409384 | 48409283 | ID=MS.gene055903.t1.exon5;Parent=MS.gene055903.t1 |
| chr1.1 | CDS | 48409283 | 48409384 | 48409283 | ID=cds.MS.gene055903.t1;Parent=MS.gene055903.t1 |
| chr1.1 | exon | 48409116 | 48409183 | 48409116 | ID=MS.gene055903.t1.exon6;Parent=MS.gene055903.t1 |
| chr1.1 | CDS | 48409116 | 48409183 | 48409116 | ID=cds.MS.gene055903.t1;Parent=MS.gene055903.t1 |
| chr1.1 | exon | 48408872 | 48408948 | 48408872 | ID=MS.gene055903.t1.exon7;Parent=MS.gene055903.t1 |
| chr1.1 | CDS | 48408872 | 48408948 | 48408872 | ID=cds.MS.gene055903.t1;Parent=MS.gene055903.t1 |
| chr1.1 | exon | 48408676 | 48408773 | 48408676 | ID=MS.gene055903.t1.exon8;Parent=MS.gene055903.t1 |
| chr1.1 | CDS | 48408676 | 48408773 | 48408676 | ID=cds.MS.gene055903.t1;Parent=MS.gene055903.t1 |
| chr1.1 | exon | 48408528 | 48408598 | 48408528 | ID=MS.gene055903.t1.exon9;Parent=MS.gene055903.t1 |
| chr1.1 | CDS | 48408528 | 48408598 | 48408528 | ID=cds.MS.gene055903.t1;Parent=MS.gene055903.t1 |
| chr1.1 | exon | 48408382 | 48408448 | 48408382 | ID=MS.gene055903.t1.exon10;Parent=MS.gene055903.t1 |
| chr1.1 | CDS | 48408382 | 48408448 | 48408382 | ID=cds.MS.gene055903.t1;Parent=MS.gene055903.t1 |
| chr1.1 | exon | 48408108 | 48408291 | 48408108 | ID=MS.gene055903.t1.exon11;Parent=MS.gene055903.t1 |
| chr1.1 | CDS | 48408108 | 48408291 | 48408108 | ID=cds.MS.gene055903.t1;Parent=MS.gene055903.t1 |
| chr1.1 | exon | 48407818 | 48407960 | 48407818 | ID=MS.gene055903.t1.exon12;Parent=MS.gene055903.t1 |
| chr1.1 | CDS | 48407818 | 48407960 | 48407818 | ID=cds.MS.gene055903.t1;Parent=MS.gene055903.t1 |
| Gene Sequence |
| Protein sequence |
