Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056047.t1 | XP_003591123.2 | 95.5 | 331 | 15 | 0 | 1 | 331 | 1 | 331 | 5.00E-178 | 633.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056047.t1 | Q8W5S1 | 64.2 | 310 | 108 | 2 | 1 | 309 | 1 | 308 | 3.4e-111 | 402.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056047.t1 | G7I853 | 95.5 | 331 | 15 | 0 | 1 | 331 | 1 | 331 | 3.6e-178 | 633.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056047 | MS.gene44109 | 0.867838 | 1.02E-65 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene28807 | MS.gene056047 | PPI |
| MS.gene22500 | MS.gene056047 | PPI |
| MS.gene056047 | MS.gene55900 | PPI |
| MS.gene67884 | MS.gene056047 | PPI |
| MS.gene056047 | MS.gene81861 | PPI |
| MS.gene056047 | MS.gene072702 | PPI |
| MS.gene59983 | MS.gene056047 | PPI |
| MS.gene35086 | MS.gene056047 | PPI |
| MS.gene042336 | MS.gene056047 | PPI |
| MS.gene056047 | MS.gene00063 | PPI |
| MS.gene056047 | MS.gene60694 | PPI |
| MS.gene056047 | MS.gene59231 | PPI |
| MS.gene056047 | MS.gene67980 | PPI |
| MS.gene056047 | MS.gene05320 | PPI |
| MS.gene006153 | MS.gene056047 | PPI |
| MS.gene056047 | MS.gene88917 | PPI |
| MS.gene28739 | MS.gene056047 | PPI |
| MS.gene056047 | MS.gene80419 | PPI |
| MS.gene056047 | MS.gene028366 | PPI |
| MS.gene056047 | MS.gene85689 | PPI |
| MS.gene36424 | MS.gene056047 | PPI |
| MS.gene056047 | MS.gene07051 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056047.t1 | MTR_1g083060 | 97.281 | 331 | 9 | 0 | 1 | 331 | 1 | 331 | 0.0 | 679 |
| MS.gene056047.t1 | MTR_7g055650 | 28.571 | 182 | 111 | 5 | 71 | 243 | 30 | 201 | 1.04e-12 | 67.4 |
| MS.gene056047.t1 | MTR_7g055650 | 28.571 | 182 | 111 | 5 | 71 | 243 | 30 | 201 | 1.10e-12 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056047.t1 | AT5G27620 | 64.350 | 331 | 115 | 2 | 1 | 330 | 1 | 329 | 1.27e-160 | 452 |
| MS.gene056047.t1 | AT5G27620 | 64.194 | 310 | 108 | 2 | 1 | 309 | 1 | 308 | 2.02e-149 | 425 |
| MS.gene056047.t1 | AT5G27620 | 63.214 | 280 | 101 | 1 | 1 | 280 | 1 | 278 | 1.56e-132 | 379 |
| MS.gene056047.t1 | AT5G48640 | 27.624 | 181 | 112 | 3 | 71 | 242 | 30 | 200 | 8.70e-14 | 70.5 |
| MS.gene056047.t1 | AT5G48630 | 27.072 | 181 | 113 | 4 | 71 | 242 | 30 | 200 | 2.44e-13 | 69.3 |
| MS.gene056047.t1 | AT5G48630 | 27.072 | 181 | 113 | 4 | 71 | 242 | 33 | 203 | 5.39e-13 | 68.6 |
| MS.gene056047.t1 | AT5G48640 | 29.605 | 152 | 88 | 3 | 100 | 242 | 11 | 152 | 1.09e-11 | 63.9 |
Find 64 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTTCATTTGAGCTCTTTC+TGG | 0.098229 | 1.1:-61429990 | None:intergenic |
| CCCAACAAGACTTCAGTTTC+CGG | 0.228077 | 1.1:-61429828 | None:intergenic |
| GGTTTGTTTGGCTCTCTTAT+TGG | 0.232116 | 1.1:-61426911 | None:intergenic |
| CGTTGGATGCAATTGATTCT+TGG | 0.292098 | 1.1:+61429621 | MS.gene056047:CDS |
| CTTCCTGATGCAGTTGGCCT+TGG | 0.318317 | 1.1:+61429315 | MS.gene056047:intron |
| ACAGGTGTCTAGGGTTTGTT+TGG | 0.333922 | 1.1:-61426923 | None:intergenic |
| TAATGAGATGATAGTTTATC+AGG | 0.337761 | 1.1:+61427994 | MS.gene056047:CDS |
| TGACCATTATCGTTAGCATT+GGG | 0.380220 | 1.1:-61427003 | None:intergenic |
| GTTGGATGCAATTGATTCTT+GGG | 0.388804 | 1.1:+61429622 | MS.gene056047:CDS |
| AAACCTTCAACTGAGCGATA+TGG | 0.395753 | 1.1:-61428150 | None:intergenic |
| CTATCTGCAATGGTCTGTTA+TGG | 0.415035 | 1.1:+61427360 | MS.gene056047:CDS |
| GCTCCATATCGCTCAGTTGA+AGG | 0.415110 | 1.1:+61428147 | MS.gene056047:CDS |
| CCGGAAACTGAAGTCTTGTT+GGG | 0.418631 | 1.1:+61429828 | MS.gene056047:CDS |
| TTAGCATTGGGGTGGGGTTG+AGG | 0.418682 | 1.1:-61426991 | None:intergenic |
| CACCCCAATGCTAACGATAA+TGG | 0.419389 | 1.1:+61427000 | MS.gene056047:CDS |
| TGAAGAAGAACAAAGTATAA+AGG | 0.425628 | 1.1:+61427158 | MS.gene056047:CDS |
| ACCGGAAACTGAAGTCTTGT+TGG | 0.428548 | 1.1:+61429827 | MS.gene056047:CDS |
| TTGCATACCTGGATCTTATG+AGG | 0.448683 | 1.1:-61427228 | None:intergenic |
| AGGAATTGAAGCACATCAAC+CGG | 0.450036 | 1.1:+61429809 | MS.gene056047:CDS |
| GACTGAGCTTCTTGAATCGT+TGG | 0.450946 | 1.1:+61429604 | MS.gene056047:CDS |
| GAGTAGCTCCACAGGTGTCT+AGG | 0.457734 | 1.1:-61426933 | None:intergenic |
| CACCTGTGGAGCTACTCTAA+TGG | 0.466483 | 1.1:+61426939 | MS.gene056047:CDS |
| TGTTCTTCTTCAATACTAAG+AGG | 0.468829 | 1.1:-61427147 | None:intergenic |
| TTGACCATTATCGTTAGCAT+TGG | 0.469740 | 1.1:-61427004 | None:intergenic |
| TGTCAAAATCAACAACTGTA+TGG | 0.471508 | 1.1:-61429363 | None:intergenic |
| AACTGTATGGAGTGCATTTG+AGG | 0.472899 | 1.1:-61429350 | None:intergenic |
| TTTGCAAAACACAGCAAGAC+TGG | 0.473114 | 1.1:+61429164 | MS.gene056047:CDS |
| TCACTTCCCTCATAAGATCC+AGG | 0.475811 | 1.1:+61427221 | MS.gene056047:CDS |
| GCACCACTCTTATTTCCTCC+TGG | 0.480232 | 1.1:+61429213 | MS.gene056047:CDS |
| CGGCTGAGGAGCTTGGTAAA+GGG | 0.489927 | 1.1:+61427942 | MS.gene056047:CDS |
| TCGGCTGAGGAGCTTGGTAA+AGG | 0.493351 | 1.1:+61427941 | MS.gene056047:CDS |
| CATGTATCGGCTGAGGAGCT+TGG | 0.496976 | 1.1:+61427935 | MS.gene056047:CDS |
| AGTAGCTCCACAGGTGTCTA+GGG | 0.501776 | 1.1:-61426932 | None:intergenic |
| TTAAAAGGTTCTATCTGCAA+TGG | 0.504235 | 1.1:+61427350 | MS.gene056047:CDS |
| TGTCAGGTGAAAAGCATTCT+CGG | 0.505166 | 1.1:+61427118 | MS.gene056047:intron |
| TGCTTCAATTCCTTCTCTGA+AGG | 0.513492 | 1.1:-61429799 | None:intergenic |
| TTATCGTTAGCATTGGGGTG+GGG | 0.515103 | 1.1:-61426997 | None:intergenic |
| CATTATCGTTAGCATTGGGG+TGG | 0.522977 | 1.1:-61426999 | None:intergenic |
| ATTATCGTTAGCATTGGGGT+GGG | 0.523584 | 1.1:-61426998 | None:intergenic |
| ACTCTTATTTCCTCCTGGAC+AGG | 0.527100 | 1.1:+61429218 | MS.gene056047:CDS |
| CCACTTCGATCGGTGGGTAG+AGG | 0.529859 | 1.1:-61426848 | None:intergenic |
| TATTCTGAGAATACCTGTCC+AGG | 0.550892 | 1.1:-61429231 | None:intergenic |
| TTCCATTAGAGTAGCTCCAC+AGG | 0.551419 | 1.1:-61426941 | None:intergenic |
| GATAGAAGAAAATCATGTAT+CGG | 0.553426 | 1.1:+61427922 | MS.gene056047:CDS |
| GCTTAACAGGGGAAAGAAGA+GGG | 0.556084 | 1.1:+61429946 | MS.gene056047:intron |
| GACCATTATCGTTAGCATTG+GGG | 0.558575 | 1.1:-61427002 | None:intergenic |
| AGAAAATCATGTATCGGCTG+AGG | 0.576466 | 1.1:+61427928 | MS.gene056047:CDS |
| TGAGGTACGCAGAGCAGCCA+AGG | 0.578460 | 1.1:-61429332 | None:intergenic |
| GAAGATCCACTTCGATCGGT+GGG | 0.579541 | 1.1:-61426854 | None:intergenic |
| AGAAGATCCACTTCGATCGG+TGG | 0.581026 | 1.1:-61426855 | None:intergenic |
| TTGTGTGCGTAGAATTCTGA+TGG | 0.581145 | 1.1:-61429580 | None:intergenic |
| CTTACAAGCAGCATATATGC+AGG | 0.582043 | 1.1:-61427900 | None:intergenic |
| CTAATGGAAGTTGATGTTGA+CGG | 0.583168 | 1.1:+61426955 | MS.gene056047:CDS |
| ATACAGAAGTCCTTCAGAGA+AGG | 0.596787 | 1.1:+61429789 | MS.gene056047:CDS |
| TGCATACCTGGATCTTATGA+GGG | 0.596868 | 1.1:-61427227 | None:intergenic |
| GAGAGAAGATCCACTTCGAT+CGG | 0.599043 | 1.1:-61426858 | None:intergenic |
| CCTCTACCCACCGATCGAAG+TGG | 0.606180 | 1.1:+61426848 | MS.gene056047:CDS |
| AGTACTCGTCATGAGAGCTA+TGG | 0.621111 | 1.1:-61429852 | None:intergenic |
| TGCTTAACAGGGGAAAGAAG+AGG | 0.625334 | 1.1:+61429945 | MS.gene056047:intron |
| CGGAAACTGAAGTCTTGTTG+GGG | 0.643818 | 1.1:+61429829 | MS.gene056047:CDS |
| TGTCCAGGAGGAAATAAGAG+TGG | 0.685097 | 1.1:-61429216 | None:intergenic |
| AAACAAACCCTAGACACCTG+TGG | 0.692987 | 1.1:+61426925 | MS.gene056047:CDS |
| TCTGAGAATACCTGTCCAGG+AGG | 0.717815 | 1.1:-61429228 | None:intergenic |
| TGTGTGCGTAGAATTCTGAT+GGG | 0.731660 | 1.1:-61429579 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATATATATATATAT+AGG | - | chr1.1:61428997-61428978 | None:intergenic | 0.0% |
| !! | ATATATATATATATATAGGA+AGG | - | chr1.1:61428974-61428993 | None:intergenic | 10.0% |
| !!! | AAATCTTACATTATATTTTT+TGG | - | chr1.1:61427394-61427413 | None:intergenic | 10.0% |
| !! | AAGAATATTAAATCTAACAA+TGG | - | chr1.1:61429275-61429294 | None:intergenic | 15.0% |
| !! | ATCATTAAAAATTGTGTTAA+CGG | - | chr1.1:61428310-61428329 | None:intergenic | 15.0% |
| !!! | CACAATTTTTAATGATTTTA+TGG | + | chr1.1:61428314-61428333 | MS.gene056047:intron | 15.0% |
| !!! | CTATTTCAAAATATTGATTA+CGG | - | chr1.1:61427297-61427316 | None:intergenic | 15.0% |
| !!! | TATAGAGTAAAAGATTTTTA+TGG | - | chr1.1:61428619-61428638 | None:intergenic | 15.0% |
| !!! | TTTTTTTGCAAAATTAAGTA+GGG | + | chr1.1:61427435-61427454 | MS.gene056047:intron | 15.0% |
| !!! | TTTTTTTTGCAAAATTAAGT+AGG | + | chr1.1:61427434-61427453 | MS.gene056047:intron | 15.0% |
| !! | AAAATAAGTAATCATTTCCA+AGG | - | chr1.1:61427606-61427625 | None:intergenic | 20.0% |
| !! | AAATAAGTAATCATTTCCAA+GGG | - | chr1.1:61427605-61427624 | None:intergenic | 20.0% |
| !! | ATTGTTAAAAAATTGAGGAA+TGG | - | chr1.1:61428525-61428544 | None:intergenic | 20.0% |
| !! | CACTAATTGTTAAAAAATTG+AGG | - | chr1.1:61428530-61428549 | None:intergenic | 20.0% |
| !! | TATTAGTTGTTTGAAAATGT+TGG | + | chr1.1:61427499-61427518 | MS.gene056047:intron | 20.0% |
| !! | TTGATATCATTTGTTTGATT+AGG | + | chr1.1:61427628-61427647 | MS.gene056047:intron | 20.0% |
| !!! | ATAATTTTGTATTGCTTAAC+AGG | + | chr1.1:61429933-61429952 | MS.gene056047:intron | 20.0% |
| !!! | CTCAATTTTTTAACAATTAG+TGG | + | chr1.1:61428528-61428547 | MS.gene056047:intron | 20.0% |
| !!! | CTTTCTCTCATTTTATTTTT+CGG | + | chr1.1:61428261-61428280 | MS.gene056047:intron | 20.0% |
| !!! | TAATTTTGTATTGCTTAACA+GGG | + | chr1.1:61429934-61429953 | MS.gene056047:intron | 20.0% |
| !!! | TTAATTTTGATCATTCACAT+AGG | - | chr1.1:61428922-61428941 | None:intergenic | 20.0% |
| ! | AGAAAATATTGCTTCATAAG+AGG | - | chr1.1:61429064-61429083 | None:intergenic | 25.0% |
| ! | ATAAGCTATCTAAAGAATCT+AGG | - | chr1.1:61427725-61427744 | None:intergenic | 25.0% |
| ! | ATGAAACAAATAACAGCTAA+TGG | - | chr1.1:61429445-61429464 | None:intergenic | 25.0% |
| ! | ATTACCAAGCTAATAAAACA+TGG | - | chr1.1:61429710-61429729 | None:intergenic | 25.0% |
| ! | GAAAATATTGCTTCATAAGA+GGG | - | chr1.1:61429063-61429082 | None:intergenic | 25.0% |
| ! | GATAGAAGAAAATCATGTAT+CGG | + | chr1.1:61427922-61427941 | MS.gene056047:CDS | 25.0% |
| ! | GCTAATAAAACATGGAAATT+TGG | - | chr1.1:61429702-61429721 | None:intergenic | 25.0% |
| ! | TAATGAGATGATAGTTTATC+AGG | + | chr1.1:61427994-61428013 | MS.gene056047:CDS | 25.0% |
| ! | TCATTACTTAATATTTGTCC+AGG | + | chr1.1:61428551-61428570 | MS.gene056047:intron | 25.0% |
| ! | TGAAATAGTTTATGTTACAC+AGG | + | chr1.1:61427309-61427328 | MS.gene056047:intron | 25.0% |
| ! | TGAAGAAGAACAAAGTATAA+AGG | + | chr1.1:61427158-61427177 | MS.gene056047:CDS | 25.0% |
| ! | TTGTTTGAAAATGTTGGAAT+TGG | + | chr1.1:61427505-61427524 | MS.gene056047:intron | 25.0% |
| !! | AATTTTGTATTGCTTAACAG+GGG | + | chr1.1:61429935-61429954 | MS.gene056047:intron | 25.0% |
| !! | TATTTCTCAACCAATTTTTG+AGG | - | chr1.1:61426883-61426902 | None:intergenic | 25.0% |
| !! | TCATTAATCTTTTTATCCCT+TGG | + | chr1.1:61427586-61427605 | MS.gene056047:intron | 25.0% |
| !!! | AGAACCTTTTAAAAAAGATG+AGG | - | chr1.1:61427342-61427361 | None:intergenic | 25.0% |
| !!! | ATTTCCATGTTTTATTAGCT+TGG | + | chr1.1:61429703-61429722 | MS.gene056047:intron | 25.0% |
| !!! | GAACCTTTTAAAAAAGATGA+GGG | - | chr1.1:61427341-61427360 | None:intergenic | 25.0% |
| !!! | GTTAGCTATTTCTTTATACT+TGG | - | chr1.1:61429110-61429129 | None:intergenic | 25.0% |
| !!! | TTATGGTTTTACATATAGGA+GGG | + | chr1.1:61428489-61428508 | MS.gene056047:intron | 25.0% |
| !!! | TTTTTTCCTGCATAATAATC+AGG | + | chr1.1:61428422-61428441 | MS.gene056047:intron | 25.0% |
| AAAAAATTGAGGAATGGTAC+TGG | - | chr1.1:61428519-61428538 | None:intergenic | 30.0% | |
| AAACACAATCGCATAATATC+AGG | - | chr1.1:61427764-61427783 | None:intergenic | 30.0% | |
| AATTCTACGTAAAAGGGTAA+AGG | - | chr1.1:61429879-61429898 | None:intergenic | 30.0% | |
| CATTTGTTTGATTAGGTTTG+TGG | + | chr1.1:61427635-61427654 | MS.gene056047:intron | 30.0% | |
| CTAGAACAATTTGATATACG+AGG | - | chr1.1:61428030-61428049 | None:intergenic | 30.0% | |
| CTTTATACTTGGAGAAGAAT+AGG | - | chr1.1:61429099-61429118 | None:intergenic | 30.0% | |
| TACAAGTACATACATACAAG+AGG | - | chr1.1:61427793-61427812 | None:intergenic | 30.0% | |
| TGAAAATGTTGGAATTGGTT+AGG | + | chr1.1:61427510-61427529 | MS.gene056047:intron | 30.0% | |
| TGAACTGAAATTTGTGACTA+TGG | + | chr1.1:61428337-61428356 | MS.gene056047:intron | 30.0% | |
| TGTCAAAATCAACAACTGTA+TGG | - | chr1.1:61429366-61429385 | None:intergenic | 30.0% | |
| TGTTCTTCTTCAATACTAAG+AGG | - | chr1.1:61427150-61427169 | None:intergenic | 30.0% | |
| TTAAAAGGTTCTATCTGCAA+TGG | + | chr1.1:61427350-61427369 | MS.gene056047:CDS | 30.0% | |
| TTACAAGTAGACAAGATACA+TGG | - | chr1.1:61428730-61428749 | None:intergenic | 30.0% | |
| ! | ATTAGTGGATGGAATTTCTT+TGG | + | chr1.1:61428465-61428484 | MS.gene056047:intron | 30.0% |
| ! | TGAAGGTTTTACAGATTCTA+TGG | + | chr1.1:61428164-61428183 | MS.gene056047:CDS | 30.0% |
| ! | TGATAGGAATTTTGCAATTC+TGG | + | chr1.1:61428364-61428383 | MS.gene056047:intron | 30.0% |
| !! | CTTATGGTTTTACATATAGG+AGG | + | chr1.1:61428488-61428507 | MS.gene056047:intron | 30.0% |
| !! | TGGCTTATGGTTTTACATAT+AGG | + | chr1.1:61428485-61428504 | MS.gene056047:intron | 30.0% |
| !!! | ATACAGTTGTTGATTTTGAC+AGG | + | chr1.1:61429365-61429384 | MS.gene056047:CDS | 30.0% |
| !!! | GTGGTTTTATTCTGTTTACA+TGG | + | chr1.1:61429730-61429749 | MS.gene056047:intron | 30.0% |
| !!! | GTTTTATTAGCTTGGTAATG+TGG | + | chr1.1:61429711-61429730 | MS.gene056047:intron | 30.0% |
| AACAGGCAATTCTACGTAAA+AGG | - | chr1.1:61429886-61429905 | None:intergenic | 35.0% | |
| AATGCCCTCTTGAACATAAA+GGG | + | chr1.1:61428802-61428821 | MS.gene056047:intron | 35.0% | |
| ACAGGCAATTCTACGTAAAA+GGG | - | chr1.1:61429885-61429904 | None:intergenic | 35.0% | |
| ACAGTGTTGCCATAATTATG+AGG | - | chr1.1:61427266-61427285 | None:intergenic | 35.0% | |
| AGATGATAGTTTATCAGGCA+CGG | + | chr1.1:61427999-61428018 | MS.gene056047:intron | 35.0% | |
| AGGAGTAGACACATTAATCT+GGG | - | chr1.1:61429523-61429542 | None:intergenic | 35.0% | |
| ATATTGCTTCATAAGAGGGA+AGG | - | chr1.1:61429059-61429078 | None:intergenic | 35.0% | |
| CAAACTACATATCAAGTGAG+AGG | + | chr1.1:61428872-61428891 | MS.gene056047:intron | 35.0% | |
| CAGGGTTTATTGTCATTGAT+GGG | - | chr1.1:61428091-61428110 | None:intergenic | 35.0% | |
| CAGTGTTGCCATAATTATGA+GGG | - | chr1.1:61427265-61427284 | None:intergenic | 35.0% | |
| CTTCTCTTCCCTCATAATTA+TGG | + | chr1.1:61427254-61427273 | MS.gene056047:intron | 35.0% | |
| GATCTTCTCTCCTCAAAAAT+TGG | + | chr1.1:61426870-61426889 | MS.gene056047:CDS | 35.0% | |
| TAGGAGTAGACACATTAATC+TGG | - | chr1.1:61429524-61429543 | None:intergenic | 35.0% | |
| TATTGCTTCATAAGAGGGAA+GGG | - | chr1.1:61429058-61429077 | None:intergenic | 35.0% | |
| TGACCATTATCGTTAGCATT+GGG | - | chr1.1:61427006-61427025 | None:intergenic | 35.0% | |
| TTGACCATTATCGTTAGCAT+TGG | - | chr1.1:61427007-61427026 | None:intergenic | 35.0% | |
| TTGTGACTATGGTCATTGAT+AGG | + | chr1.1:61428348-61428367 | MS.gene056047:intron | 35.0% | |
| ! | AGCTAATGGAAACTGTTTTC+GGG | - | chr1.1:61429431-61429450 | None:intergenic | 35.0% |
| ! | AGGTTTTACAGATTCTATGG+AGG | + | chr1.1:61428167-61428186 | MS.gene056047:CDS | 35.0% |
| ! | CAGCTAATGGAAACTGTTTT+CGG | - | chr1.1:61429432-61429451 | None:intergenic | 35.0% |
| ! | GATGGAATTTCTTTGGCTTA+TGG | + | chr1.1:61428472-61428491 | MS.gene056047:intron | 35.0% |
| ! | GTTGGATGCAATTGATTCTT+GGG | + | chr1.1:61429622-61429641 | MS.gene056047:CDS | 35.0% |
| ! | TTCAGACTCATTGGTTGTTA+TGG | + | chr1.1:61427459-61427478 | MS.gene056047:intron | 35.0% |
| ! | TTGAGATCGTTTCAAGCTTT+TGG | + | chr1.1:61428575-61428594 | MS.gene056047:intron | 35.0% |
| !! | CTAATGGAAGTTGATGTTGA+CGG | + | chr1.1:61426955-61426974 | MS.gene056047:CDS | 35.0% |
| !!! | CAGCCCTCATCTTTTTTAAA+AGG | + | chr1.1:61427335-61427354 | MS.gene056047:CDS | 35.0% |
| !!! | TACTTTTTCTCCTGCTGTAT+AGG | + | chr1.1:61429140-61429159 | MS.gene056047:intron | 35.0% |
| !!! | TTTCAAGCTTTTGGAACTGT+AGG | + | chr1.1:61428584-61428603 | MS.gene056047:intron | 35.0% |
| AAAACTGCAAGTGCAAGTGT+AGG | - | chr1.1:61429543-61429562 | None:intergenic | 40.0% | |
| AAACCTTCAACTGAGCGATA+TGG | - | chr1.1:61428153-61428172 | None:intergenic | 40.0% | |
| AACTGTATGGAGTGCATTTG+AGG | - | chr1.1:61429353-61429372 | None:intergenic | 40.0% | |
| AAGAGAAGAGATTGCATACC+TGG | - | chr1.1:61427242-61427261 | None:intergenic | 40.0% | |
| AAGTAGGGATTCAGACTCAT+TGG | + | chr1.1:61427450-61427469 | MS.gene056047:intron | 40.0% | |
| AGGAATTGAAGCACATCAAC+CGG | + | chr1.1:61429809-61429828 | MS.gene056047:CDS | 40.0% | |
| ATACAGAAGTCCTTCAGAGA+AGG | + | chr1.1:61429789-61429808 | MS.gene056047:CDS | 40.0% | |
| ATAGTTTATCAGGCACGGAA+AGG | + | chr1.1:61428004-61428023 | MS.gene056047:intron | 40.0% | |
| ATATATAGCCGAAGCCACAT+TGG | - | chr1.1:61429757-61429776 | None:intergenic | 40.0% | |
| ATGATGTGGTCATTAGTGGA+TGG | + | chr1.1:61428454-61428473 | MS.gene056047:intron | 40.0% | |
| ATTAGGTTTGTGGTCGTTGT+TGG | + | chr1.1:61427645-61427664 | MS.gene056047:intron | 40.0% | |
| CAATGCCCTCTTGAACATAA+AGG | + | chr1.1:61428801-61428820 | MS.gene056047:intron | 40.0% | |
| CACAATGATGTGGTCATTAG+TGG | + | chr1.1:61428450-61428469 | MS.gene056047:intron | 40.0% | |
| CCAGGGTTTATTGTCATTGA+TGG | - | chr1.1:61428092-61428111 | None:intergenic | 40.0% | |
| CCATCAATGACAATAAACCC+TGG | + | chr1.1:61428089-61428108 | MS.gene056047:intron | 40.0% | |
| CTATCTGCAATGGTCTGTTA+TGG | + | chr1.1:61427360-61427379 | MS.gene056047:CDS | 40.0% | |
| CTTACAAGCAGCATATATGC+AGG | - | chr1.1:61427903-61427922 | None:intergenic | 40.0% | |
| GACCATTATCGTTAGCATTG+GGG | - | chr1.1:61427005-61427024 | None:intergenic | 40.0% | |
| GTAGAATTGCCTGTTTGAGA+GGG | + | chr1.1:61429891-61429910 | MS.gene056047:intron | 40.0% | |
| GTTAACGGTAGACAGTTCAT+GGG | - | chr1.1:61428295-61428314 | None:intergenic | 40.0% | |
| GTTGTGTTGTGTTTCATGTC+AGG | + | chr1.1:61427102-61427121 | MS.gene056047:intron | 40.0% | |
| TCTGTTTACATGGACCAATG+TGG | + | chr1.1:61429740-61429759 | MS.gene056047:intron | 40.0% | |
| TGCATACCTGGATCTTATGA+GGG | - | chr1.1:61427230-61427249 | None:intergenic | 40.0% | |
| TGCTTCAATTCCTTCTCTGA+AGG | - | chr1.1:61429802-61429821 | None:intergenic | 40.0% | |
| TGCTTCATTTGAGCTCTTTC+TGG | - | chr1.1:61429993-61430012 | None:intergenic | 40.0% | |
| TGTGACAACAAAATGACCTG+CGG | + | chr1.1:61429470-61429489 | MS.gene056047:intron | 40.0% | |
| TGTGTGCGTAGAATTCTGAT+GGG | - | chr1.1:61429582-61429601 | None:intergenic | 40.0% | |
| TGTTAACGGTAGACAGTTCA+TGG | - | chr1.1:61428296-61428315 | None:intergenic | 40.0% | |
| TTAGCTTCTCAGTAACTCAG+AGG | + | chr1.1:61427858-61427877 | MS.gene056047:intron | 40.0% | |
| TTGCATACCTGGATCTTATG+AGG | - | chr1.1:61427231-61427250 | None:intergenic | 40.0% | |
| TTGTATCTTCCTGATGCAGT+TGG | + | chr1.1:61429309-61429328 | MS.gene056047:intron | 40.0% | |
| TTGTGTGCGTAGAATTCTGA+TGG | - | chr1.1:61429583-61429602 | None:intergenic | 40.0% | |
| TTTGCAAAACACAGCAAGAC+TGG | + | chr1.1:61429164-61429183 | MS.gene056047:CDS | 40.0% | |
| ! | ATTATCGTTAGCATTGGGGT+GGG | - | chr1.1:61427001-61427020 | None:intergenic | 40.0% |
| ! | ATTTTGCAATTCTGGTGAGG+AGG | + | chr1.1:61428372-61428391 | MS.gene056047:CDS | 40.0% |
| ! | CGTTGGATGCAATTGATTCT+TGG | + | chr1.1:61429621-61429640 | MS.gene056047:CDS | 40.0% |
| ! | CTTTATGTTCAAGAGGGCAT+TGG | - | chr1.1:61428803-61428822 | None:intergenic | 40.0% |
| ! | GGAATTTTGCAATTCTGGTG+AGG | + | chr1.1:61428369-61428388 | MS.gene056047:intron | 40.0% |
| ! | TATTCTGAGAATACCTGTCC+AGG | - | chr1.1:61429234-61429253 | None:intergenic | 40.0% |
| ! | TTTTGCAAAGCCTATACAGC+AGG | - | chr1.1:61429153-61429172 | None:intergenic | 40.0% |
| !! | AGAAAATCATGTATCGGCTG+AGG | + | chr1.1:61427928-61427947 | MS.gene056047:CDS | 40.0% |
| !! | CTGAGAGATGGATTGGTTAT+TGG | + | chr1.1:61427553-61427572 | MS.gene056047:intron | 40.0% |
| !! | GGTTTGTTTGGCTCTCTTAT+TGG | - | chr1.1:61426914-61426933 | None:intergenic | 40.0% |
| !! | TGTCAGGTGAAAAGCATTCT+CGG | + | chr1.1:61427118-61427137 | MS.gene056047:intron | 40.0% |
| AAACAAACCCTAGACACCTG+TGG | + | chr1.1:61426925-61426944 | MS.gene056047:CDS | 45.0% | |
| AATCCAGACTCTGCATAACC+AGG | - | chr1.1:61428110-61428129 | None:intergenic | 45.0% | |
| AGCGCCCTTTATGTTCAAGA+GGG | - | chr1.1:61428809-61428828 | None:intergenic | 45.0% | |
| AGTACTCGTCATGAGAGCTA+TGG | - | chr1.1:61429855-61429874 | None:intergenic | 45.0% | |
| ATCCAGACTCTGCATAACCA+GGG | - | chr1.1:61428109-61428128 | None:intergenic | 45.0% | |
| ATGCAGGTCAACCTGTACAA+AGG | - | chr1.1:61427887-61427906 | None:intergenic | 45.0% | |
| CACCCCAATGCTAACGATAA+TGG | + | chr1.1:61427000-61427019 | MS.gene056047:CDS | 45.0% | |
| CACGAAAATCCCTCTCAAAC+AGG | - | chr1.1:61429903-61429922 | None:intergenic | 45.0% | |
| CATAAGAGGGAAGGGAATTG+AGG | - | chr1.1:61429050-61429069 | None:intergenic | 45.0% | |
| CCCAACAAGACTTCAGTTTC+CGG | - | chr1.1:61429831-61429850 | None:intergenic | 45.0% | |
| CGTAGAATTGCCTGTTTGAG+AGG | + | chr1.1:61429890-61429909 | MS.gene056047:intron | 45.0% | |
| CTCAGAGGAAACCTTTGTAC+AGG | + | chr1.1:61427873-61427892 | MS.gene056047:intron | 45.0% | |
| GACTGAGCTTCTTGAATCGT+TGG | + | chr1.1:61429604-61429623 | MS.gene056047:CDS | 45.0% | |
| GAGAGAAGATCCACTTCGAT+CGG | - | chr1.1:61426861-61426880 | None:intergenic | 45.0% | |
| GCTCAGCCTGATTATTATGC+AGG | - | chr1.1:61428431-61428450 | None:intergenic | 45.0% | |
| GCTTAACAGGGGAAAGAAGA+GGG | + | chr1.1:61429946-61429965 | MS.gene056047:intron | 45.0% | |
| GCTTGAAACGATCTCAATCC+TGG | - | chr1.1:61428572-61428591 | None:intergenic | 45.0% | |
| GGAGGAGCTTCAAAAACTCA+AGG | + | chr1.1:61428390-61428409 | MS.gene056047:CDS | 45.0% | |
| GTGACAACAAAATGACCTGC+GGG | + | chr1.1:61429471-61429490 | MS.gene056047:intron | 45.0% | |
| GTGTGCAGTTCTCAATGCAA+CGG | - | chr1.1:61428664-61428683 | None:intergenic | 45.0% | |
| TACATGGACCAATGTGGCTT+CGG | + | chr1.1:61429746-61429765 | MS.gene056047:intron | 45.0% | |
| TCACTTCCCTCATAAGATCC+AGG | + | chr1.1:61427221-61427240 | MS.gene056047:CDS | 45.0% | |
| TCAGTTGAGCGACATCTACT+AGG | - | chr1.1:61429662-61429681 | None:intergenic | 45.0% | |
| TCTATGGAGGTTCGTCTAGT+TGG | + | chr1.1:61428180-61428199 | MS.gene056047:intron | 45.0% | |
| TGACAACAAAATGACCTGCG+GGG | + | chr1.1:61429472-61429491 | MS.gene056047:intron | 45.0% | |
| TGCTTAACAGGGGAAAGAAG+AGG | + | chr1.1:61429945-61429964 | MS.gene056047:intron | 45.0% | |
| TGTACTGCTGAGAGATGGAT+TGG | + | chr1.1:61427546-61427565 | MS.gene056047:intron | 45.0% | |
| TGTCCAGGAGGAAATAAGAG+TGG | - | chr1.1:61429219-61429238 | None:intergenic | 45.0% | |
| TTCCATTAGAGTAGCTCCAC+AGG | - | chr1.1:61426944-61426963 | None:intergenic | 45.0% | |
| ! | ACAGGTGTCTAGGGTTTGTT+TGG | - | chr1.1:61426926-61426945 | None:intergenic | 45.0% |
| ! | ACATATCAAGTGAGAGGTGC+AGG | + | chr1.1:61428878-61428897 | MS.gene056047:intron | 45.0% |
| ! | ACCGGAAACTGAAGTCTTGT+TGG | + | chr1.1:61429827-61429846 | MS.gene056047:CDS | 45.0% |
| ! | ACTCTTATTTCCTCCTGGAC+AGG | + | chr1.1:61429218-61429237 | MS.gene056047:CDS | 45.0% |
| ! | CATTATCGTTAGCATTGGGG+TGG | - | chr1.1:61427002-61427021 | None:intergenic | 45.0% |
| ! | TTATCGTTAGCATTGGGGTG+GGG | - | chr1.1:61427000-61427019 | None:intergenic | 45.0% |
| !! | CCGGAAACTGAAGTCTTGTT+GGG | + | chr1.1:61429828-61429847 | MS.gene056047:CDS | 45.0% |
| !! | CGGAAACTGAAGTCTTGTTG+GGG | + | chr1.1:61429829-61429848 | MS.gene056047:CDS | 45.0% |
| !!! | GAAACTGTTTTCGGGTCTGA+GGG | - | chr1.1:61429423-61429442 | None:intergenic | 45.0% |
| !!! | TATTATTTTATTTATTTGTT+AGG | + | chr1.1:61427697-61427716 | MS.gene056047:intron | 5.0% |
| AACCCTGGTTATGCAGAGTC+TGG | + | chr1.1:61428104-61428123 | MS.gene056047:intron | 50.0% | |
| ACTAAAATCCAAACCCCCGC+AGG | - | chr1.1:61429489-61429508 | None:intergenic | 50.0% | |
| AGAAGATCCACTTCGATCGG+TGG | - | chr1.1:61426858-61426877 | None:intergenic | 50.0% | |
| AGTAGCTCCACAGGTGTCTA+GGG | - | chr1.1:61426935-61426954 | None:intergenic | 50.0% | |
| CACCTGTGGAGCTACTCTAA+TGG | + | chr1.1:61426939-61426958 | MS.gene056047:CDS | 50.0% | |
| CAGCGCCCTTTATGTTCAAG+AGG | - | chr1.1:61428810-61428829 | None:intergenic | 50.0% | |
| CCATCTCTCAGCAGTACATC+AGG | - | chr1.1:61427544-61427563 | None:intergenic | 50.0% | |
| CCTGATGTACTGCTGAGAGA+TGG | + | chr1.1:61427541-61427560 | MS.gene056047:intron | 50.0% | |
| GAAGATCCACTTCGATCGGT+GGG | - | chr1.1:61426857-61426876 | None:intergenic | 50.0% | |
| GACAACAAAATGACCTGCGG+GGG | + | chr1.1:61429473-61429492 | MS.gene056047:intron | 50.0% | |
| GCTCCATATCGCTCAGTTGA+AGG | + | chr1.1:61428147-61428166 | MS.gene056047:CDS | 50.0% | |
| GTGGCTTCGGCTATATATGC+AGG | + | chr1.1:61429759-61429778 | MS.gene056047:intron | 50.0% | |
| TCAGGCTGAGCACAATGATG+TGG | + | chr1.1:61428440-61428459 | MS.gene056047:intron | 50.0% | |
| TCTGAGAATACCTGTCCAGG+AGG | - | chr1.1:61429231-61429250 | None:intergenic | 50.0% | |
| ! | ATGTAGTTTGCGCGCATGTG+TGG | - | chr1.1:61428862-61428881 | None:intergenic | 50.0% |
| ! | GCACCACTCTTATTTCCTCC+TGG | + | chr1.1:61429213-61429232 | MS.gene056047:CDS | 50.0% |
| ! | TGTAGTTTGCGCGCATGTGT+GGG | - | chr1.1:61428861-61428880 | None:intergenic | 50.0% |
| !!! | GGAAACTGTTTTCGGGTCTG+AGG | - | chr1.1:61429424-61429443 | None:intergenic | 50.0% |
| CAAAATGACCTGCGGGGGTT+TGG | + | chr1.1:61429478-61429497 | MS.gene056047:intron | 55.0% | |
| CGGCTGAGGAGCTTGGTAAA+GGG | + | chr1.1:61427942-61427961 | MS.gene056047:CDS | 55.0% | |
| GAGTAGCTCCACAGGTGTCT+AGG | - | chr1.1:61426936-61426955 | None:intergenic | 55.0% | |
| GGTTCGTCTAGTTGGCTGTG+TGG | + | chr1.1:61428188-61428207 | MS.gene056047:intron | 55.0% | |
| TCGGCTGAGGAGCTTGGTAA+AGG | + | chr1.1:61427941-61427960 | MS.gene056047:CDS | 55.0% | |
| ! | CTTCCTGATGCAGTTGGCCT+TGG | + | chr1.1:61429315-61429334 | MS.gene056047:intron | 55.0% |
| ! | TTAGCATTGGGGTGGGGTTG+AGG | - | chr1.1:61426994-61427013 | None:intergenic | 55.0% |
| !! | CATGTATCGGCTGAGGAGCT+TGG | + | chr1.1:61427935-61427954 | MS.gene056047:CDS | 55.0% |
| CAGCCAAGGCCAACTGCATC+AGG | - | chr1.1:61429321-61429340 | None:intergenic | 60.0% | |
| CCACTTCGATCGGTGGGTAG+AGG | - | chr1.1:61426851-61426870 | None:intergenic | 60.0% | |
| CCTCTACCCACCGATCGAAG+TGG | + | chr1.1:61426848-61426867 | MS.gene056047:CDS | 60.0% | |
| TGAGGTACGCAGAGCAGCCA+AGG | - | chr1.1:61429335-61429354 | None:intergenic | 60.0% | |
| GTGCGCGCACAGAGAGGTAG+AGG | - | chr1.1:61428839-61428858 | None:intergenic | 65.0% | |
| GTGTGGGTGCGCGCACAGAG+AGG | - | chr1.1:61428845-61428864 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 61426832 | 61430024 | 61426832 | ID=MS.gene056047 |
| chr1.1 | mRNA | 61426832 | 61430024 | 61426832 | ID=MS.gene056047.t1;Parent=MS.gene056047 |
| chr1.1 | exon | 61426832 | 61427021 | 61426832 | ID=MS.gene056047.t1.exon1;Parent=MS.gene056047.t1 |
| chr1.1 | CDS | 61426832 | 61427021 | 61426832 | ID=cds.MS.gene056047.t1;Parent=MS.gene056047.t1 |
| chr1.1 | exon | 61427124 | 61427242 | 61427124 | ID=MS.gene056047.t1.exon2;Parent=MS.gene056047.t1 |
| chr1.1 | CDS | 61427124 | 61427242 | 61427124 | ID=cds.MS.gene056047.t1;Parent=MS.gene056047.t1 |
| chr1.1 | exon | 61427331 | 61427404 | 61427331 | ID=MS.gene056047.t1.exon3;Parent=MS.gene056047.t1 |
| chr1.1 | CDS | 61427331 | 61427404 | 61427331 | ID=cds.MS.gene056047.t1;Parent=MS.gene056047.t1 |
| chr1.1 | exon | 61427895 | 61428015 | 61427895 | ID=MS.gene056047.t1.exon4;Parent=MS.gene056047.t1 |
| chr1.1 | CDS | 61427895 | 61428015 | 61427895 | ID=cds.MS.gene056047.t1;Parent=MS.gene056047.t1 |
| chr1.1 | exon | 61428120 | 61428188 | 61428120 | ID=MS.gene056047.t1.exon5;Parent=MS.gene056047.t1 |
| chr1.1 | CDS | 61428120 | 61428188 | 61428120 | ID=cds.MS.gene056047.t1;Parent=MS.gene056047.t1 |
| chr1.1 | exon | 61428370 | 61428411 | 61428370 | ID=MS.gene056047.t1.exon6;Parent=MS.gene056047.t1 |
| chr1.1 | CDS | 61428370 | 61428411 | 61428370 | ID=cds.MS.gene056047.t1;Parent=MS.gene056047.t1 |
| chr1.1 | exon | 61429162 | 61429239 | 61429162 | ID=MS.gene056047.t1.exon7;Parent=MS.gene056047.t1 |
| chr1.1 | CDS | 61429162 | 61429239 | 61429162 | ID=cds.MS.gene056047.t1;Parent=MS.gene056047.t1 |
| chr1.1 | exon | 61429328 | 61429386 | 61429328 | ID=MS.gene056047.t1.exon8;Parent=MS.gene056047.t1 |
| chr1.1 | CDS | 61429328 | 61429386 | 61429328 | ID=cds.MS.gene056047.t1;Parent=MS.gene056047.t1 |
| chr1.1 | exon | 61429559 | 61429643 | 61429559 | ID=MS.gene056047.t1.exon9;Parent=MS.gene056047.t1 |
| chr1.1 | CDS | 61429559 | 61429643 | 61429559 | ID=cds.MS.gene056047.t1;Parent=MS.gene056047.t1 |
| chr1.1 | exon | 61429781 | 61429869 | 61429781 | ID=MS.gene056047.t1.exon10;Parent=MS.gene056047.t1 |
| chr1.1 | CDS | 61429781 | 61429869 | 61429781 | ID=cds.MS.gene056047.t1;Parent=MS.gene056047.t1 |
| chr1.1 | exon | 61429955 | 61430024 | 61429955 | ID=MS.gene056047.t1.exon11;Parent=MS.gene056047.t1 |
| chr1.1 | CDS | 61429955 | 61430024 | 61429955 | ID=cds.MS.gene056047.t1;Parent=MS.gene056047.t1 |
| Gene Sequence |
| Protein sequence |
