Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44109.t1 | XP_003591123.2 | 95.2 | 331 | 16 | 0 | 1 | 331 | 1 | 331 | 2.50E-177 | 631.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44109.t1 | Q8W5S1 | 64.2 | 310 | 108 | 2 | 1 | 309 | 1 | 308 | 1.5e-111 | 404.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44109.t1 | G7I853 | 95.2 | 331 | 16 | 0 | 1 | 331 | 1 | 331 | 1.8e-177 | 631.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056047 | MS.gene44109 | 0.867838 | 1.02E-65 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene81861 | MS.gene44109 | PPI |
| MS.gene36424 | MS.gene44109 | PPI |
| MS.gene28739 | MS.gene44109 | PPI |
| MS.gene44109 | MS.gene88917 | PPI |
| MS.gene44109 | MS.gene80419 | PPI |
| MS.gene44109 | MS.gene028366 | PPI |
| MS.gene44109 | MS.gene85689 | PPI |
| MS.gene35086 | MS.gene44109 | PPI |
| MS.gene042336 | MS.gene44109 | PPI |
| MS.gene44109 | MS.gene07051 | PPI |
| MS.gene28807 | MS.gene44109 | PPI |
| MS.gene22500 | MS.gene44109 | PPI |
| MS.gene44109 | MS.gene55900 | PPI |
| MS.gene67884 | MS.gene44109 | PPI |
| MS.gene59983 | MS.gene44109 | PPI |
| MS.gene006153 | MS.gene44109 | PPI |
| MS.gene072702 | MS.gene44109 | PPI |
| MS.gene44109 | MS.gene00063 | PPI |
| MS.gene44109 | MS.gene60694 | PPI |
| MS.gene44109 | MS.gene59231 | PPI |
| MS.gene44109 | MS.gene67980 | PPI |
| MS.gene44109 | MS.gene05320 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44109.t1 | MTR_1g083060 | 96.979 | 331 | 10 | 0 | 1 | 331 | 1 | 331 | 0.0 | 676 |
| MS.gene44109.t1 | MTR_7g055650 | 28.571 | 182 | 111 | 5 | 71 | 243 | 30 | 201 | 4.77e-13 | 68.6 |
| MS.gene44109.t1 | MTR_7g055650 | 28.571 | 182 | 111 | 5 | 71 | 243 | 30 | 201 | 5.08e-13 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44109.t1 | AT5G27620 | 64.350 | 331 | 115 | 2 | 1 | 330 | 1 | 329 | 6.01e-161 | 453 |
| MS.gene44109.t1 | AT5G27620 | 64.194 | 310 | 108 | 2 | 1 | 309 | 1 | 308 | 9.21e-150 | 426 |
| MS.gene44109.t1 | AT5G27620 | 63.214 | 280 | 101 | 1 | 1 | 280 | 1 | 278 | 6.36e-133 | 380 |
| MS.gene44109.t1 | AT5G48640 | 25.738 | 237 | 150 | 6 | 71 | 298 | 30 | 249 | 4.18e-14 | 71.6 |
| MS.gene44109.t1 | AT5G48630 | 27.072 | 181 | 113 | 4 | 71 | 242 | 30 | 200 | 1.07e-13 | 70.5 |
| MS.gene44109.t1 | AT5G48630 | 27.072 | 181 | 113 | 4 | 71 | 242 | 33 | 203 | 2.23e-13 | 69.3 |
| MS.gene44109.t1 | AT5G48640 | 29.605 | 152 | 88 | 3 | 100 | 242 | 11 | 152 | 5.11e-12 | 64.7 |
Find 65 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTTCATTTGAGCTCTTTC+TGG | 0.098229 | 1.3:-58616627 | None:intergenic |
| CCCAACAAGACTTCAGTTTC+CGG | 0.228077 | 1.3:-58616465 | None:intergenic |
| GGTTTGTTTGGCTCTCTTAT+TGG | 0.232116 | 1.3:-58613563 | None:intergenic |
| CGTTGGATGCAATTGATTCT+TGG | 0.292098 | 1.3:+58616258 | MS.gene44109:CDS |
| CTTCCTGATGCAGTTGGCCT+TGG | 0.318317 | 1.3:+58615952 | MS.gene44109:intron |
| ACAGGTGTCTAGGGTTTGTT+TGG | 0.333922 | 1.3:-58613575 | None:intergenic |
| TAATGAGATGATAGTTTATC+AGG | 0.337761 | 1.3:+58614641 | MS.gene44109:CDS |
| AAACCTTCAACTGAGCGATA+TGG | 0.378055 | 1.3:-58614799 | None:intergenic |
| TGACCATTATCGTTAGCATT+GGG | 0.380220 | 1.3:-58613655 | None:intergenic |
| GTTGGATGCAATTGATTCTT+GGG | 0.388804 | 1.3:+58616259 | MS.gene44109:CDS |
| CTATCTGCAATGGTCTGTTA+TGG | 0.415035 | 1.3:+58614007 | MS.gene44109:CDS |
| GCTCCATATCGCTCAGTTGA+AGG | 0.415110 | 1.3:+58614796 | MS.gene44109:CDS |
| CCGGAAACTGAAGTCTTGTT+GGG | 0.418631 | 1.3:+58616465 | MS.gene44109:CDS |
| TTAGCATTGGGGTGGGGTTG+AGG | 0.418682 | 1.3:-58613643 | None:intergenic |
| CACCCCAATGCTAACGATAA+TGG | 0.419389 | 1.3:+58613652 | MS.gene44109:CDS |
| TGAAGAAGAACAAAGTATAA+AGG | 0.425628 | 1.3:+58613805 | MS.gene44109:CDS |
| ACCGGAAACTGAAGTCTTGT+TGG | 0.428548 | 1.3:+58616464 | MS.gene44109:CDS |
| TTGCATACCTGGATCTTATG+AGG | 0.448683 | 1.3:-58613875 | None:intergenic |
| AGGAATTGAAGCACATCAAC+CGG | 0.450036 | 1.3:+58616446 | MS.gene44109:CDS |
| GACTGAGCTTCTTGAATCGT+TGG | 0.450946 | 1.3:+58616241 | MS.gene44109:CDS |
| GAGTAGCTCCACAGGTGTCT+AGG | 0.457734 | 1.3:-58613585 | None:intergenic |
| CACCTGTGGAGCTACTCTAA+TGG | 0.466483 | 1.3:+58613591 | MS.gene44109:CDS |
| TGTTCTTCTTCAATACTAAG+AGG | 0.468829 | 1.3:-58613794 | None:intergenic |
| TTGACCATTATCGTTAGCAT+TGG | 0.469740 | 1.3:-58613656 | None:intergenic |
| TGTCAAAATCAACAACTGTA+TGG | 0.471508 | 1.3:-58616000 | None:intergenic |
| AACTGTATGGAGTGCATTTG+AGG | 0.472899 | 1.3:-58615987 | None:intergenic |
| TTTGCAAAACACAGCAAGAC+TGG | 0.473114 | 1.3:+58615801 | MS.gene44109:CDS |
| TCACTTCCCTCATAAGATCC+AGG | 0.475811 | 1.3:+58613868 | MS.gene44109:CDS |
| GCACCACTCTTATTTCCTCC+TGG | 0.480232 | 1.3:+58615850 | MS.gene44109:CDS |
| CATGTATCGGCTGAGGAGCT+TGG | 0.496976 | 1.3:+58614582 | MS.gene44109:CDS |
| TGTCAGGTGAAAAGCATTCT+CGG | 0.498005 | 1.3:+58613765 | MS.gene44109:intron |
| AGTAGCTCCACAGGTGTCTA+GGG | 0.501776 | 1.3:-58613584 | None:intergenic |
| TTAAAAGGTTCTATCTGCAA+TGG | 0.504235 | 1.3:+58613997 | MS.gene44109:CDS |
| ATCGGCTGAGGAGCTTGGTA+AGG | 0.506701 | 1.3:+58614587 | MS.gene44109:CDS |
| TGCTTCAATTCCTTCTCTGA+AGG | 0.513492 | 1.3:-58616436 | None:intergenic |
| TTATCGTTAGCATTGGGGTG+GGG | 0.515103 | 1.3:-58613649 | None:intergenic |
| CATTATCGTTAGCATTGGGG+TGG | 0.522977 | 1.3:-58613651 | None:intergenic |
| ATTATCGTTAGCATTGGGGT+GGG | 0.523584 | 1.3:-58613650 | None:intergenic |
| ACTCTTATTTCCTCCTGGAC+AGG | 0.527100 | 1.3:+58615855 | MS.gene44109:CDS |
| CCACTTCGATCGGTGGGTAG+AGG | 0.529859 | 1.3:-58613500 | None:intergenic |
| TATTCTGAGAATACCTGTCC+AGG | 0.550892 | 1.3:-58615868 | None:intergenic |
| TTCCATTAGAGTAGCTCCAC+AGG | 0.551419 | 1.3:-58613593 | None:intergenic |
| GATAGAAGAAAATCATGTAT+CGG | 0.553426 | 1.3:+58614569 | MS.gene44109:CDS |
| TCGGCTGAGGAGCTTGGTAA+GGG | 0.553857 | 1.3:+58614588 | MS.gene44109:CDS |
| GCTTAACAGGGGAAAGAAGA+GGG | 0.556084 | 1.3:+58616583 | MS.gene44109:intron |
| GACCATTATCGTTAGCATTG+GGG | 0.558575 | 1.3:-58613654 | None:intergenic |
| AGAAAATCATGTATCGGCTG+AGG | 0.576466 | 1.3:+58614575 | MS.gene44109:CDS |
| TGAGGTACGCAGAGCAGCCA+AGG | 0.578460 | 1.3:-58615969 | None:intergenic |
| GAAGATCCACTTCGATCGGT+GGG | 0.579541 | 1.3:-58613506 | None:intergenic |
| AGAAGATCCACTTCGATCGG+TGG | 0.581026 | 1.3:-58613507 | None:intergenic |
| TTGTGTGCGTAGAATTCTGA+TGG | 0.581145 | 1.3:-58616217 | None:intergenic |
| CTTACAAGCAGCATATATGC+AGG | 0.582043 | 1.3:-58614547 | None:intergenic |
| CTAATGGAAGTTGATGTTGA+CGG | 0.583168 | 1.3:+58613607 | MS.gene44109:CDS |
| ATACAGAAGTCCTTCAGAGA+AGG | 0.596787 | 1.3:+58616426 | MS.gene44109:CDS |
| TGCATACCTGGATCTTATGA+GGG | 0.596868 | 1.3:-58613874 | None:intergenic |
| GAGAGAAGATCCACTTCGAT+CGG | 0.599043 | 1.3:-58613510 | None:intergenic |
| CCTCTACCCACCGATCGAAG+TGG | 0.606180 | 1.3:+58613500 | MS.gene44109:CDS |
| AGTACTCGTCATGAGAGCTA+TGG | 0.621111 | 1.3:-58616489 | None:intergenic |
| TGCTTAACAGGGGAAAGAAG+AGG | 0.625334 | 1.3:+58616582 | MS.gene44109:intron |
| CGGCTGAGGAGCTTGGTAAG+GGG | 0.626783 | 1.3:+58614589 | MS.gene44109:CDS |
| CGGAAACTGAAGTCTTGTTG+GGG | 0.643818 | 1.3:+58616466 | MS.gene44109:CDS |
| TGTCCAGGAGGAAATAAGAG+TGG | 0.685097 | 1.3:-58615853 | None:intergenic |
| AAACAAACCCTAGACACCTG+TGG | 0.692987 | 1.3:+58613577 | MS.gene44109:CDS |
| TCTGAGAATACCTGTCCAGG+AGG | 0.717815 | 1.3:-58615865 | None:intergenic |
| TGTGTGCGTAGAATTCTGAT+GGG | 0.731660 | 1.3:-58616216 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATATATATATATAT+AGG | - | chr1.3:58615646-58615627 | None:intergenic | 0.0% |
| !! | ATATATATATATATATAGGA+AGG | - | chr1.3:58615623-58615642 | None:intergenic | 10.0% |
| !!! | AAATCTTACATTATATTTTT+TGG | - | chr1.3:58614041-58614060 | None:intergenic | 10.0% |
| !! | AAGAATATTAAATCTAACAA+TGG | - | chr1.3:58615912-58615931 | None:intergenic | 15.0% |
| !! | ATCATTAAAAATTGTGTTAA+CGG | - | chr1.3:58614959-58614978 | None:intergenic | 15.0% |
| !!! | CACAATTTTTAATGATTTTA+TGG | + | chr1.3:58614963-58614982 | MS.gene44109:intron | 15.0% |
| !!! | CTATTTCAAAATATTGATTA+CGG | - | chr1.3:58613944-58613963 | None:intergenic | 15.0% |
| !!! | TATAGAGTAAAAGATTTTTA+TGG | - | chr1.3:58615268-58615287 | None:intergenic | 15.0% |
| !!! | TTTTTTTGCAAAATTAAGTA+AGG | + | chr1.3:58614080-58614099 | MS.gene44109:intron | 15.0% |
| !! | ATTGTTAAAAAATTGAGGAA+TGG | - | chr1.3:58615174-58615193 | None:intergenic | 20.0% |
| !! | CACTAATTGTTAAAAAATTG+AGG | - | chr1.3:58615179-58615198 | None:intergenic | 20.0% |
| !! | TATTAGTTGTTTGAAAATGT+TGG | + | chr1.3:58614144-58614163 | MS.gene44109:intron | 20.0% |
| !! | TTGATATCATTTGTTTGATT+AGG | + | chr1.3:58614273-58614292 | MS.gene44109:intron | 20.0% |
| !!! | ATAATTTTGTATTGCTTAAC+AGG | + | chr1.3:58616570-58616589 | MS.gene44109:intron | 20.0% |
| !!! | CTCAATTTTTTAACAATTAG+TGG | + | chr1.3:58615177-58615196 | MS.gene44109:intron | 20.0% |
| !!! | CTTTCTCTCATTTTATTTTT+CGG | + | chr1.3:58614910-58614929 | MS.gene44109:intron | 20.0% |
| !!! | TAATTTTGTATTGCTTAACA+GGG | + | chr1.3:58616571-58616590 | MS.gene44109:intron | 20.0% |
| !!! | TTAATTTTGATCATTCACAT+AGG | - | chr1.3:58615571-58615590 | None:intergenic | 20.0% |
| ! | AAAATAAGTAATCAGTTCCA+AGG | - | chr1.3:58614251-58614270 | None:intergenic | 25.0% |
| ! | AAATAAGTAATCAGTTCCAA+GGG | - | chr1.3:58614250-58614269 | None:intergenic | 25.0% |
| ! | AGAAAATATTGCTTCATAAG+AGG | - | chr1.3:58615701-58615720 | None:intergenic | 25.0% |
| ! | ATAAGCTATCTAAAGAATCT+AGG | - | chr1.3:58614368-58614387 | None:intergenic | 25.0% |
| ! | ATGAAACAAATAACAGCTAA+TGG | - | chr1.3:58616082-58616101 | None:intergenic | 25.0% |
| ! | ATTACCAAGCTAATAAAACA+TGG | - | chr1.3:58616347-58616366 | None:intergenic | 25.0% |
| ! | GAAAATATTGCTTCATAAGA+GGG | - | chr1.3:58615700-58615719 | None:intergenic | 25.0% |
| ! | GATAGAAGAAAATCATGTAT+CGG | + | chr1.3:58614569-58614588 | MS.gene44109:CDS | 25.0% |
| ! | GCTAATAAAACATGGAAATT+TGG | - | chr1.3:58616339-58616358 | None:intergenic | 25.0% |
| ! | TAATGAGATGATAGTTTATC+AGG | + | chr1.3:58614641-58614660 | MS.gene44109:CDS | 25.0% |
| ! | TCATTACTTAATATTTGTCC+AGG | + | chr1.3:58615200-58615219 | MS.gene44109:intron | 25.0% |
| ! | TGAAATAGTTTATGTTACAC+AGG | + | chr1.3:58613956-58613975 | MS.gene44109:intron | 25.0% |
| ! | TGAAGAAGAACAAAGTATAA+AGG | + | chr1.3:58613805-58613824 | MS.gene44109:CDS | 25.0% |
| ! | TTGTTTGAAAATGTTGGAAT+TGG | + | chr1.3:58614150-58614169 | MS.gene44109:intron | 25.0% |
| !! | AATTTTGTATTGCTTAACAG+GGG | + | chr1.3:58616572-58616591 | MS.gene44109:intron | 25.0% |
| !! | TATTTCTCAACCAATTTTTG+AGG | - | chr1.3:58613535-58613554 | None:intergenic | 25.0% |
| !! | TCATTAATCTTTTTATCCCT+TGG | + | chr1.3:58614231-58614250 | MS.gene44109:intron | 25.0% |
| !!! | AGAACCTTTTAAAAAAGATG+AGG | - | chr1.3:58613989-58614008 | None:intergenic | 25.0% |
| !!! | ATTTCCATGTTTTATTAGCT+TGG | + | chr1.3:58616340-58616359 | MS.gene44109:intron | 25.0% |
| !!! | GAACCTTTTAAAAAAGATGA+GGG | - | chr1.3:58613988-58614007 | None:intergenic | 25.0% |
| !!! | GTTAGCTATTTCTTTATACT+TGG | - | chr1.3:58615747-58615766 | None:intergenic | 25.0% |
| !!! | TGAAGGTTTTATAGATTCTA+TGG | + | chr1.3:58614813-58614832 | MS.gene44109:CDS | 25.0% |
| !!! | TTATGGTTTTACATATAGGA+GGG | + | chr1.3:58615138-58615157 | MS.gene44109:intron | 25.0% |
| !!! | TTTTTTCCTGCATAATAATC+AGG | + | chr1.3:58615071-58615090 | MS.gene44109:intron | 25.0% |
| AAAAAATTGAGGAATGGTAC+TGG | - | chr1.3:58615168-58615187 | None:intergenic | 30.0% | |
| AATTCTACGTAAAAGGGTAA+AGG | - | chr1.3:58616516-58616535 | None:intergenic | 30.0% | |
| CAAGAACAATTTGATATACG+AGG | - | chr1.3:58614677-58614696 | None:intergenic | 30.0% | |
| CATTTGTTTGATTAGGTTTG+TGG | + | chr1.3:58614280-58614299 | MS.gene44109:intron | 30.0% | |
| CTTTATACTTGGAGAAGAAT+AGG | - | chr1.3:58615736-58615755 | None:intergenic | 30.0% | |
| TACAAGTACATACATACAAG+AGG | - | chr1.3:58614440-58614459 | None:intergenic | 30.0% | |
| TGAAAATGTTGGAATTGGTT+AGG | + | chr1.3:58614155-58614174 | MS.gene44109:intron | 30.0% | |
| TGAACTGAAATTTGTGACTA+TGG | + | chr1.3:58614986-58615005 | MS.gene44109:intron | 30.0% | |
| TGTCAAAATCAACAACTGTA+TGG | - | chr1.3:58616003-58616022 | None:intergenic | 30.0% | |
| TGTTCTTCTTCAATACTAAG+AGG | - | chr1.3:58613797-58613816 | None:intergenic | 30.0% | |
| TTAAAAGGTTCTATCTGCAA+TGG | + | chr1.3:58613997-58614016 | MS.gene44109:CDS | 30.0% | |
| TTACAAGTAGACAAGATACA+TGG | - | chr1.3:58615379-58615398 | None:intergenic | 30.0% | |
| ! | ATTAGTGGATGGAATTTCTT+TGG | + | chr1.3:58615114-58615133 | MS.gene44109:intron | 30.0% |
| ! | TGATAGGAATTTTGCAATTC+TGG | + | chr1.3:58615013-58615032 | MS.gene44109:intron | 30.0% |
| !! | AGGTTTTATAGATTCTATGG+AGG | + | chr1.3:58614816-58614835 | MS.gene44109:CDS | 30.0% |
| !! | CTTATGGTTTTACATATAGG+AGG | + | chr1.3:58615137-58615156 | MS.gene44109:intron | 30.0% |
| !! | TGGCTTATGGTTTTACATAT+AGG | + | chr1.3:58615134-58615153 | MS.gene44109:intron | 30.0% |
| !!! | ATACAGTTGTTGATTTTGAC+AGG | + | chr1.3:58616002-58616021 | MS.gene44109:CDS | 30.0% |
| !!! | GTGGTTTTATTCTGTTTACA+TGG | + | chr1.3:58616367-58616386 | MS.gene44109:intron | 30.0% |
| !!! | GTTTTATTAGCTTGGTAATG+TGG | + | chr1.3:58616348-58616367 | MS.gene44109:intron | 30.0% |
| AACAGGCAATTCTACGTAAA+AGG | - | chr1.3:58616523-58616542 | None:intergenic | 35.0% | |
| AAGAGTTGTGTGTTTATGTC+AGG | + | chr1.3:58613749-58613768 | MS.gene44109:intron | 35.0% | |
| AAGTAAGGATTCAGACTCAT+TGG | + | chr1.3:58614095-58614114 | MS.gene44109:intron | 35.0% | |
| AATGCCCTCTTGAACATAAA+GGG | + | chr1.3:58615451-58615470 | MS.gene44109:intron | 35.0% | |
| ACACACAATCGCATAATATC+AGG | - | chr1.3:58614407-58614426 | None:intergenic | 35.0% | |
| ACAGGCAATTCTACGTAAAA+GGG | - | chr1.3:58616522-58616541 | None:intergenic | 35.0% | |
| ACAGTGTTGCCATAATTATG+AGG | - | chr1.3:58613913-58613932 | None:intergenic | 35.0% | |
| AGATGATAGTTTATCAGGCA+CGG | + | chr1.3:58614646-58614665 | MS.gene44109:intron | 35.0% | |
| AGGAGTAGACACATTAATCT+GGG | - | chr1.3:58616160-58616179 | None:intergenic | 35.0% | |
| ATATTGCTTCATAAGAGGGA+AGG | - | chr1.3:58615696-58615715 | None:intergenic | 35.0% | |
| CAAACTACATATCAAGTGAG+AGG | + | chr1.3:58615521-58615540 | MS.gene44109:intron | 35.0% | |
| CAGGGTTTATTGTCATTGAT+GGG | - | chr1.3:58614740-58614759 | None:intergenic | 35.0% | |
| CAGTGTTGCCATAATTATGA+GGG | - | chr1.3:58613912-58613931 | None:intergenic | 35.0% | |
| CTTCTCTTCCCTCATAATTA+TGG | + | chr1.3:58613901-58613920 | MS.gene44109:intron | 35.0% | |
| GATCTTCTCTCCTCAAAAAT+TGG | + | chr1.3:58613522-58613541 | MS.gene44109:CDS | 35.0% | |
| TAGGAGTAGACACATTAATC+TGG | - | chr1.3:58616161-58616180 | None:intergenic | 35.0% | |
| TATTGCTTCATAAGAGGGAA+GGG | - | chr1.3:58615695-58615714 | None:intergenic | 35.0% | |
| TGACCATTATCGTTAGCATT+GGG | - | chr1.3:58613658-58613677 | None:intergenic | 35.0% | |
| TTGACCATTATCGTTAGCAT+TGG | - | chr1.3:58613659-58613678 | None:intergenic | 35.0% | |
| TTGTGACTATGGTCATTGAT+AGG | + | chr1.3:58614997-58615016 | MS.gene44109:intron | 35.0% | |
| ! | AGCTAATGGAAACTGTTTTC+GGG | - | chr1.3:58616068-58616087 | None:intergenic | 35.0% |
| ! | CAGCTAATGGAAACTGTTTT+CGG | - | chr1.3:58616069-58616088 | None:intergenic | 35.0% |
| ! | GATGGAATTTCTTTGGCTTA+TGG | + | chr1.3:58615121-58615140 | MS.gene44109:intron | 35.0% |
| ! | GTTGGATGCAATTGATTCTT+GGG | + | chr1.3:58616259-58616278 | MS.gene44109:CDS | 35.0% |
| ! | TTCAGACTCATTGGTTGTTA+TGG | + | chr1.3:58614104-58614123 | MS.gene44109:intron | 35.0% |
| ! | TTGAGATCGTTTCAAGCTTT+TGG | + | chr1.3:58615224-58615243 | MS.gene44109:intron | 35.0% |
| !! | CTAATGGAAGTTGATGTTGA+CGG | + | chr1.3:58613607-58613626 | MS.gene44109:CDS | 35.0% |
| !!! | CAGCCCTCATCTTTTTTAAA+AGG | + | chr1.3:58613982-58614001 | MS.gene44109:CDS | 35.0% |
| !!! | TACTTTTTCTCCTGCTGTAT+AGG | + | chr1.3:58615777-58615796 | MS.gene44109:intron | 35.0% |
| !!! | TTTCAAGCTTTTGGAACTGT+AGG | + | chr1.3:58615233-58615252 | MS.gene44109:intron | 35.0% |
| AAAACTGCAAGTGCAAGTGT+AGG | - | chr1.3:58616180-58616199 | None:intergenic | 40.0% | |
| AAACCTTCAACTGAGCGATA+TGG | - | chr1.3:58614802-58614821 | None:intergenic | 40.0% | |
| AACTGTATGGAGTGCATTTG+AGG | - | chr1.3:58615990-58616009 | None:intergenic | 40.0% | |
| AAGAGAAGAGATTGCATACC+TGG | - | chr1.3:58613889-58613908 | None:intergenic | 40.0% | |
| AGGAATTGAAGCACATCAAC+CGG | + | chr1.3:58616446-58616465 | MS.gene44109:CDS | 40.0% | |
| ATACAGAAGTCCTTCAGAGA+AGG | + | chr1.3:58616426-58616445 | MS.gene44109:CDS | 40.0% | |
| ATAGTTTATCAGGCACGGAA+AGG | + | chr1.3:58614651-58614670 | MS.gene44109:intron | 40.0% | |
| ATATATAGCCGAAGCCACAT+TGG | - | chr1.3:58616394-58616413 | None:intergenic | 40.0% | |
| ATGATGTGGTCATTAGTGGA+TGG | + | chr1.3:58615103-58615122 | MS.gene44109:intron | 40.0% | |
| ATTAGGTTTGTGGTCGTTGT+TGG | + | chr1.3:58614290-58614309 | MS.gene44109:intron | 40.0% | |
| CAATGCCCTCTTGAACATAA+AGG | + | chr1.3:58615450-58615469 | MS.gene44109:intron | 40.0% | |
| CACAATGATGTGGTCATTAG+TGG | + | chr1.3:58615099-58615118 | MS.gene44109:intron | 40.0% | |
| CCAGGGTTTATTGTCATTGA+TGG | - | chr1.3:58614741-58614760 | None:intergenic | 40.0% | |
| CCATCAATGACAATAAACCC+TGG | + | chr1.3:58614738-58614757 | MS.gene44109:intron | 40.0% | |
| CTATCTGCAATGGTCTGTTA+TGG | + | chr1.3:58614007-58614026 | MS.gene44109:CDS | 40.0% | |
| CTTACAAGCAGCATATATGC+AGG | - | chr1.3:58614550-58614569 | None:intergenic | 40.0% | |
| GACCATTATCGTTAGCATTG+GGG | - | chr1.3:58613657-58613676 | None:intergenic | 40.0% | |
| GTAGAATTGCCTGTTTGAGA+GGG | + | chr1.3:58616528-58616547 | MS.gene44109:intron | 40.0% | |
| GTTAACGGTAGACAGTTCAT+GGG | - | chr1.3:58614944-58614963 | None:intergenic | 40.0% | |
| TCTGTTTACATGGACCAATG+TGG | + | chr1.3:58616377-58616396 | MS.gene44109:intron | 40.0% | |
| TGCATACCTGGATCTTATGA+GGG | - | chr1.3:58613877-58613896 | None:intergenic | 40.0% | |
| TGCTTCAATTCCTTCTCTGA+AGG | - | chr1.3:58616439-58616458 | None:intergenic | 40.0% | |
| TGCTTCATTTGAGCTCTTTC+TGG | - | chr1.3:58616630-58616649 | None:intergenic | 40.0% | |
| TGTGACAACAAAATGACCTG+CGG | + | chr1.3:58616107-58616126 | MS.gene44109:intron | 40.0% | |
| TGTGTGCGTAGAATTCTGAT+GGG | - | chr1.3:58616219-58616238 | None:intergenic | 40.0% | |
| TGTTAACGGTAGACAGTTCA+TGG | - | chr1.3:58614945-58614964 | None:intergenic | 40.0% | |
| TTAGCTTCTCAGTAACTCAG+AGG | + | chr1.3:58614505-58614524 | MS.gene44109:intron | 40.0% | |
| TTGCATACCTGGATCTTATG+AGG | - | chr1.3:58613878-58613897 | None:intergenic | 40.0% | |
| TTGTATCTTCCTGATGCAGT+TGG | + | chr1.3:58615946-58615965 | MS.gene44109:intron | 40.0% | |
| TTGTGTGCGTAGAATTCTGA+TGG | - | chr1.3:58616220-58616239 | None:intergenic | 40.0% | |
| TTTGCAAAACACAGCAAGAC+TGG | + | chr1.3:58615801-58615820 | MS.gene44109:CDS | 40.0% | |
| ! | ATTATCGTTAGCATTGGGGT+GGG | - | chr1.3:58613653-58613672 | None:intergenic | 40.0% |
| ! | ATTTTGCAATTCTGGTGAGG+AGG | + | chr1.3:58615021-58615040 | MS.gene44109:CDS | 40.0% |
| ! | CGTTGGATGCAATTGATTCT+TGG | + | chr1.3:58616258-58616277 | MS.gene44109:CDS | 40.0% |
| ! | CTTTATGTTCAAGAGGGCAT+TGG | - | chr1.3:58615452-58615471 | None:intergenic | 40.0% |
| ! | GGAATTTTGCAATTCTGGTG+AGG | + | chr1.3:58615018-58615037 | MS.gene44109:intron | 40.0% |
| ! | TATTCTGAGAATACCTGTCC+AGG | - | chr1.3:58615871-58615890 | None:intergenic | 40.0% |
| ! | TTTTGCAAAGCCTATACAGC+AGG | - | chr1.3:58615790-58615809 | None:intergenic | 40.0% |
| !! | AGAAAATCATGTATCGGCTG+AGG | + | chr1.3:58614575-58614594 | MS.gene44109:CDS | 40.0% |
| !! | CTGAGAGATGGATTGGTTAT+TGG | + | chr1.3:58614198-58614217 | MS.gene44109:intron | 40.0% |
| !! | GGTTTGTTTGGCTCTCTTAT+TGG | - | chr1.3:58613566-58613585 | None:intergenic | 40.0% |
| !! | TGTCAGGTGAAAAGCATTCT+CGG | + | chr1.3:58613765-58613784 | MS.gene44109:intron | 40.0% |
| AAACAAACCCTAGACACCTG+TGG | + | chr1.3:58613577-58613596 | MS.gene44109:CDS | 45.0% | |
| AATCCAGACTCTGCATAACC+AGG | - | chr1.3:58614759-58614778 | None:intergenic | 45.0% | |
| AGCGCCCTTTATGTTCAAGA+GGG | - | chr1.3:58615458-58615477 | None:intergenic | 45.0% | |
| AGTACTCGTCATGAGAGCTA+TGG | - | chr1.3:58616492-58616511 | None:intergenic | 45.0% | |
| ATCCAGACTCTGCATAACCA+GGG | - | chr1.3:58614758-58614777 | None:intergenic | 45.0% | |
| ATGCAGGTCAACCTGTACAA+AGG | - | chr1.3:58614534-58614553 | None:intergenic | 45.0% | |
| CACCCCAATGCTAACGATAA+TGG | + | chr1.3:58613652-58613671 | MS.gene44109:CDS | 45.0% | |
| CACGAAAATCCCTCTCAAAC+AGG | - | chr1.3:58616540-58616559 | None:intergenic | 45.0% | |
| CATAAGAGGGAAGGGAATTG+AGG | - | chr1.3:58615687-58615706 | None:intergenic | 45.0% | |
| CCCAACAAGACTTCAGTTTC+CGG | - | chr1.3:58616468-58616487 | None:intergenic | 45.0% | |
| CGTAGAATTGCCTGTTTGAG+AGG | + | chr1.3:58616527-58616546 | MS.gene44109:intron | 45.0% | |
| CTCAGAGGAAACCTTTGTAC+AGG | + | chr1.3:58614520-58614539 | MS.gene44109:intron | 45.0% | |
| GACTGAGCTTCTTGAATCGT+TGG | + | chr1.3:58616241-58616260 | MS.gene44109:CDS | 45.0% | |
| GAGAGAAGATCCACTTCGAT+CGG | - | chr1.3:58613513-58613532 | None:intergenic | 45.0% | |
| GCTCAGCCTGATTATTATGC+AGG | - | chr1.3:58615080-58615099 | None:intergenic | 45.0% | |
| GCTTAACAGGGGAAAGAAGA+GGG | + | chr1.3:58616583-58616602 | MS.gene44109:intron | 45.0% | |
| GCTTGAAACGATCTCAATCC+TGG | - | chr1.3:58615221-58615240 | None:intergenic | 45.0% | |
| GGAGGAGCTTCAAAAACTCA+AGG | + | chr1.3:58615039-58615058 | MS.gene44109:CDS | 45.0% | |
| GTGACAACAAAATGACCTGC+GGG | + | chr1.3:58616108-58616127 | MS.gene44109:intron | 45.0% | |
| GTGTGCAGTTCTCAATGCAA+CGG | - | chr1.3:58615313-58615332 | None:intergenic | 45.0% | |
| TACATGGACCAATGTGGCTT+CGG | + | chr1.3:58616383-58616402 | MS.gene44109:intron | 45.0% | |
| TCACTTCCCTCATAAGATCC+AGG | + | chr1.3:58613868-58613887 | MS.gene44109:CDS | 45.0% | |
| TCAGTTGAGCGACATCTACT+AGG | - | chr1.3:58616299-58616318 | None:intergenic | 45.0% | |
| TCTATGGAGGTTCGTCTAGT+TGG | + | chr1.3:58614829-58614848 | MS.gene44109:intron | 45.0% | |
| TGACAACAAAATGACCTGCG+GGG | + | chr1.3:58616109-58616128 | MS.gene44109:intron | 45.0% | |
| TGCTTAACAGGGGAAAGAAG+AGG | + | chr1.3:58616582-58616601 | MS.gene44109:intron | 45.0% | |
| TGTACTGCTGAGAGATGGAT+TGG | + | chr1.3:58614191-58614210 | MS.gene44109:intron | 45.0% | |
| TGTCCAGGAGGAAATAAGAG+TGG | - | chr1.3:58615856-58615875 | None:intergenic | 45.0% | |
| TTCCATTAGAGTAGCTCCAC+AGG | - | chr1.3:58613596-58613615 | None:intergenic | 45.0% | |
| ! | ACAGGTGTCTAGGGTTTGTT+TGG | - | chr1.3:58613578-58613597 | None:intergenic | 45.0% |
| ! | ACATATCAAGTGAGAGGTGC+AGG | + | chr1.3:58615527-58615546 | MS.gene44109:intron | 45.0% |
| ! | ACCGGAAACTGAAGTCTTGT+TGG | + | chr1.3:58616464-58616483 | MS.gene44109:CDS | 45.0% |
| ! | ACTCTTATTTCCTCCTGGAC+AGG | + | chr1.3:58615855-58615874 | MS.gene44109:CDS | 45.0% |
| ! | CATTATCGTTAGCATTGGGG+TGG | - | chr1.3:58613654-58613673 | None:intergenic | 45.0% |
| ! | TTATCGTTAGCATTGGGGTG+GGG | - | chr1.3:58613652-58613671 | None:intergenic | 45.0% |
| !! | CCGGAAACTGAAGTCTTGTT+GGG | + | chr1.3:58616465-58616484 | MS.gene44109:CDS | 45.0% |
| !! | CGGAAACTGAAGTCTTGTTG+GGG | + | chr1.3:58616466-58616485 | MS.gene44109:CDS | 45.0% |
| !!! | GAAACTGTTTTCGGGTCTGA+GGG | - | chr1.3:58616060-58616079 | None:intergenic | 45.0% |
| !!! | TATTATTTTATTTATTTGTT+AGG | + | chr1.3:58614340-58614359 | MS.gene44109:intron | 5.0% |
| AACCCTGGTTATGCAGAGTC+TGG | + | chr1.3:58614753-58614772 | MS.gene44109:intron | 50.0% | |
| ACTAAAATCCAAACCCCCGC+AGG | - | chr1.3:58616126-58616145 | None:intergenic | 50.0% | |
| AGAAGATCCACTTCGATCGG+TGG | - | chr1.3:58613510-58613529 | None:intergenic | 50.0% | |
| AGTAGCTCCACAGGTGTCTA+GGG | - | chr1.3:58613587-58613606 | None:intergenic | 50.0% | |
| CACCTGTGGAGCTACTCTAA+TGG | + | chr1.3:58613591-58613610 | MS.gene44109:CDS | 50.0% | |
| CAGCGCCCTTTATGTTCAAG+AGG | - | chr1.3:58615459-58615478 | None:intergenic | 50.0% | |
| CCATCTCTCAGCAGTACATC+AGG | - | chr1.3:58614189-58614208 | None:intergenic | 50.0% | |
| CCTGATGTACTGCTGAGAGA+TGG | + | chr1.3:58614186-58614205 | MS.gene44109:intron | 50.0% | |
| GAAGATCCACTTCGATCGGT+GGG | - | chr1.3:58613509-58613528 | None:intergenic | 50.0% | |
| GACAACAAAATGACCTGCGG+GGG | + | chr1.3:58616110-58616129 | MS.gene44109:intron | 50.0% | |
| GCTCCATATCGCTCAGTTGA+AGG | + | chr1.3:58614796-58614815 | MS.gene44109:CDS | 50.0% | |
| GTGGCTTCGGCTATATATGC+AGG | + | chr1.3:58616396-58616415 | MS.gene44109:intron | 50.0% | |
| TCAGGCTGAGCACAATGATG+TGG | + | chr1.3:58615089-58615108 | MS.gene44109:intron | 50.0% | |
| TCTGAGAATACCTGTCCAGG+AGG | - | chr1.3:58615868-58615887 | None:intergenic | 50.0% | |
| ! | ATGTAGTTTGCGCGCATGTG+TGG | - | chr1.3:58615511-58615530 | None:intergenic | 50.0% |
| ! | GCACCACTCTTATTTCCTCC+TGG | + | chr1.3:58615850-58615869 | MS.gene44109:CDS | 50.0% |
| ! | TGTAGTTTGCGCGCATGTGT+GGG | - | chr1.3:58615510-58615529 | None:intergenic | 50.0% |
| !!! | GGAAACTGTTTTCGGGTCTG+AGG | - | chr1.3:58616061-58616080 | None:intergenic | 50.0% |
| ATCGGCTGAGGAGCTTGGTA+AGG | + | chr1.3:58614587-58614606 | MS.gene44109:CDS | 55.0% | |
| CAAAATGACCTGCGGGGGTT+TGG | + | chr1.3:58616115-58616134 | MS.gene44109:intron | 55.0% | |
| GAGTAGCTCCACAGGTGTCT+AGG | - | chr1.3:58613588-58613607 | None:intergenic | 55.0% | |
| GGTTCGTCTAGTTGGCTGTG+TGG | + | chr1.3:58614837-58614856 | MS.gene44109:intron | 55.0% | |
| TCGGCTGAGGAGCTTGGTAA+GGG | + | chr1.3:58614588-58614607 | MS.gene44109:CDS | 55.0% | |
| ! | CTTCCTGATGCAGTTGGCCT+TGG | + | chr1.3:58615952-58615971 | MS.gene44109:intron | 55.0% |
| ! | TTAGCATTGGGGTGGGGTTG+AGG | - | chr1.3:58613646-58613665 | None:intergenic | 55.0% |
| !! | CATGTATCGGCTGAGGAGCT+TGG | + | chr1.3:58614582-58614601 | MS.gene44109:CDS | 55.0% |
| CAGCCAAGGCCAACTGCATC+AGG | - | chr1.3:58615958-58615977 | None:intergenic | 60.0% | |
| CCACTTCGATCGGTGGGTAG+AGG | - | chr1.3:58613503-58613522 | None:intergenic | 60.0% | |
| CCTCTACCCACCGATCGAAG+TGG | + | chr1.3:58613500-58613519 | MS.gene44109:CDS | 60.0% | |
| CGGCTGAGGAGCTTGGTAAG+GGG | + | chr1.3:58614589-58614608 | MS.gene44109:CDS | 60.0% | |
| GTGTGCGCACAGAGAGGTAG+AGG | - | chr1.3:58615488-58615507 | None:intergenic | 60.0% | |
| TGAGGTACGCAGAGCAGCCA+AGG | - | chr1.3:58615972-58615991 | None:intergenic | 60.0% | |
| GTGTGGGTGTGCGCACAGAG+AGG | - | chr1.3:58615494-58615513 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 58613484 | 58616661 | 58613484 | ID=MS.gene44109 |
| chr1.3 | mRNA | 58613484 | 58616661 | 58613484 | ID=MS.gene44109.t1;Parent=MS.gene44109 |
| chr1.3 | exon | 58613484 | 58613673 | 58613484 | ID=MS.gene44109.t1.exon1;Parent=MS.gene44109.t1 |
| chr1.3 | CDS | 58613484 | 58613673 | 58613484 | ID=cds.MS.gene44109.t1;Parent=MS.gene44109.t1 |
| chr1.3 | exon | 58613771 | 58613889 | 58613771 | ID=MS.gene44109.t1.exon2;Parent=MS.gene44109.t1 |
| chr1.3 | CDS | 58613771 | 58613889 | 58613771 | ID=cds.MS.gene44109.t1;Parent=MS.gene44109.t1 |
| chr1.3 | exon | 58613978 | 58614051 | 58613978 | ID=MS.gene44109.t1.exon3;Parent=MS.gene44109.t1 |
| chr1.3 | CDS | 58613978 | 58614051 | 58613978 | ID=cds.MS.gene44109.t1;Parent=MS.gene44109.t1 |
| chr1.3 | exon | 58614542 | 58614662 | 58614542 | ID=MS.gene44109.t1.exon4;Parent=MS.gene44109.t1 |
| chr1.3 | CDS | 58614542 | 58614662 | 58614542 | ID=cds.MS.gene44109.t1;Parent=MS.gene44109.t1 |
| chr1.3 | exon | 58614769 | 58614837 | 58614769 | ID=MS.gene44109.t1.exon5;Parent=MS.gene44109.t1 |
| chr1.3 | CDS | 58614769 | 58614837 | 58614769 | ID=cds.MS.gene44109.t1;Parent=MS.gene44109.t1 |
| chr1.3 | exon | 58615019 | 58615060 | 58615019 | ID=MS.gene44109.t1.exon6;Parent=MS.gene44109.t1 |
| chr1.3 | CDS | 58615019 | 58615060 | 58615019 | ID=cds.MS.gene44109.t1;Parent=MS.gene44109.t1 |
| chr1.3 | exon | 58615799 | 58615876 | 58615799 | ID=MS.gene44109.t1.exon7;Parent=MS.gene44109.t1 |
| chr1.3 | CDS | 58615799 | 58615876 | 58615799 | ID=cds.MS.gene44109.t1;Parent=MS.gene44109.t1 |
| chr1.3 | exon | 58615965 | 58616023 | 58615965 | ID=MS.gene44109.t1.exon8;Parent=MS.gene44109.t1 |
| chr1.3 | CDS | 58615965 | 58616023 | 58615965 | ID=cds.MS.gene44109.t1;Parent=MS.gene44109.t1 |
| chr1.3 | exon | 58616196 | 58616280 | 58616196 | ID=MS.gene44109.t1.exon9;Parent=MS.gene44109.t1 |
| chr1.3 | CDS | 58616196 | 58616280 | 58616196 | ID=cds.MS.gene44109.t1;Parent=MS.gene44109.t1 |
| chr1.3 | exon | 58616418 | 58616506 | 58616418 | ID=MS.gene44109.t1.exon10;Parent=MS.gene44109.t1 |
| chr1.3 | CDS | 58616418 | 58616506 | 58616418 | ID=cds.MS.gene44109.t1;Parent=MS.gene44109.t1 |
| chr1.3 | exon | 58616592 | 58616661 | 58616592 | ID=MS.gene44109.t1.exon11;Parent=MS.gene44109.t1 |
| chr1.3 | CDS | 58616592 | 58616661 | 58616592 | ID=cds.MS.gene44109.t1;Parent=MS.gene44109.t1 |
| Gene Sequence |
| Protein sequence |
