AlfalfaGEDB | MS.gene072196

M. sativa cultivar XinJiangDaYe / MS.gene072196

KEGG: -
GO: GO:0003674 GO:0003824 GO:0016787 GO:0016788
PFAM: PF00657.25

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072196.t1	XP_003627082.1	98.6	355	5	0	1	355	1	355	1.90E-199	704.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072196.t1	Q9LU14	72.3	354	96	1	1	354	1	352	7.9e-146	518.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072196.t1	G7LHE2	98.6	355	5	0	1	355	1	355	1.4e-199	704.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049351	MS.gene072196	0.844336	8.05E-59	-1.69E-46
MS.gene049356	MS.gene072196	0.81083	9.48E-51	-1.69E-46
MS.gene049369	MS.gene072196	0.816175	6.33E-52	-1.69E-46
MS.gene049427	MS.gene072196	0.829123	6.14E-55	-1.69E-46
MS.gene049491	MS.gene072196	0.871422	6.92E-67	-1.69E-46
MS.gene049614	MS.gene072196	0.854851	9.35E-62	-1.69E-46
MS.gene049661	MS.gene072196	0.842312	2.79E-58	-1.69E-46
MS.gene049662	MS.gene072196	0.830607	2.67E-55	-1.69E-46
MS.gene049681	MS.gene072196	0.824707	6.98E-54	-1.69E-46
MS.gene049758	MS.gene072196	0.826347	2.85E-54	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072196.t1	MTR_8g014910	98.592	355	5	0	1	355	1	355	0.0	718
MS.gene072196.t1	MTR_2g100620	77.208	351	80	0	4	354	3	353	0.0	570
MS.gene072196.t1	MTR_2g084585	58.873	355	143	2	1	355	1	352	1.08e-150	428
MS.gene072196.t1	MTR_4g056280	49.719	356	172	3	1	354	1	351	6.51e-124	361
MS.gene072196.t1	MTR_4g056160	51.368	329	158	2	29	355	24	352	4.84e-117	343
MS.gene072196.t1	MTR_5g084750	42.899	338	189	2	10	347	11	344	1.42e-97	293
MS.gene072196.t1	MTR_1g025780	43.567	342	184	5	10	347	17	353	3.75e-97	293
MS.gene072196.t1	MTR_3g464730	42.982	342	193	2	7	347	3	343	3.90e-96	290
MS.gene072196.t1	MTR_5g084790	42.453	318	182	1	30	347	30	346	1.08e-95	289
MS.gene072196.t1	MTR_3g082830	43.963	323	180	1	30	352	36	357	1.55e-95	288

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072196.t1	AT3G16370	75.904	332	78	1	23	354	23	352	0.0	525
MS.gene072196.t1	AT5G22810	60.303	330	127	2	29	355	31	359	4.03e-148	422
MS.gene072196.t1	AT5G03810	57.020	349	147	3	8	355	7	353	5.90e-144	411
MS.gene072196.t1	AT5G03820	55.432	359	151	4	4	355	1	357	2.58e-142	407
MS.gene072196.t1	AT5G03820	57.267	344	143	3	14	355	44	385	3.62e-141	405
MS.gene072196.t1	AT3G53100	51.695	354	167	3	1	354	1	350	1.07e-130	378
MS.gene072196.t1	AT5G42170	45.625	320	166	3	30	347	48	361	1.42e-100	301
MS.gene072196.t1	AT2G04570	42.363	347	195	3	1	347	1	342	4.14e-99	297
MS.gene072196.t1	AT2G42990	41.956	317	183	1	30	346	26	341	7.41e-94	284
MS.gene072196.t1	AT3G14820	43.789	322	172	5	28	347	28	342	1.94e-93	283

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Find 71 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCACAATCTTTAGACC+AGG	0.647895	8.1:-82573222	None:intergenic
AAAATTATTATACCAATCCT+TGG	0.441731	8.1:+82572803	MS.gene072196:CDS
AAAGGCTGCATCTATTATCA+AGG	0.521328	8.1:+82572738	MS.gene072196:CDS
AACTTTGCTTCAGCTGCATC+TGG	0.352556	8.1:+82572021	MS.gene072196:CDS
AAGCAAAGTTAGCACCAAGA+AGG	0.572551	8.1:-82572008	None:intergenic
AAGGCTAATTACCCTCCTTA+TGG	0.370041	8.1:+82571363	MS.gene072196:CDS
AATCTTCAAAAGCAACTTCC+TGG	0.397330	8.1:+82573204	MS.gene072196:CDS
ACCTGCATATCTTAGTCCAC+AGG	0.573584	8.1:+82571969	MS.gene072196:CDS
ACGCAGGGCGTGTATGGATT+AGG	0.377710	8.1:+82573033	MS.gene072196:intron
ACTGATCAACAGTGATTGCT+TGG	0.542659	8.1:-82572831	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATCACAATCTTTAGACC+AGG	-	chr8.1:82573225-82573244	None:intergenic	30.0%
ACATTGAGATTTCAATGAAG+AGG	-	chr8.1:82571531-82571550	None:intergenic	30.0%
CATAAGGACAAGATAATAAC+TGG	+	chr8.1:82573448-82573467	MS.gene072196:intron	30.0%
CATGGAAGACCATATAATAA+AGG	-	chr8.1:82571508-82571527	None:intergenic	30.0%
CCAACAGTTAGAATATTTCA+AGG	+	chr8.1:82572678-82572697	MS.gene072196:CDS	30.0%
CCACTATAAGCTAACTTATT+AGG	-	chr8.1:82572143-82572162	None:intergenic	30.0%
CCTTGAAATATTCTAACTGT+TGG	-	chr8.1:82572681-82572700	None:intergenic	30.0%
CGACTAAGATTTATTTGAAG+GGG	+	chr8.1:82571605-82571624	MS.gene072196:intron	30.0%
CTTCATTGAAATCTCAATGT+TGG	+	chr8.1:82571531-82571550	MS.gene072196:intron	30.0%
GAATTAAGCTATAAGGCATA+AGG	+	chr8.1:82572344-82572363	MS.gene072196:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.1	gene	82571204	82573717	82571204	ID=MS.gene072196
chr8.1	mRNA	82571204	82573717	82571204	ID=MS.gene072196.t1;Parent=MS.gene072196
chr8.1	exon	82571204	82571453	82571204	ID=MS.gene072196.t1.exon1;Parent=MS.gene072196.t1
chr8.1	CDS	82571204	82571453	82571204	ID=cds.MS.gene072196.t1;Parent=MS.gene072196.t1
chr8.1	exon	82571941	82572071	82571941	ID=MS.gene072196.t1.exon2;Parent=MS.gene072196.t1
chr8.1	CDS	82571941	82572071	82571941	ID=cds.MS.gene072196.t1;Parent=MS.gene072196.t1
chr8.1	exon	82572661	82572894	82572661	ID=MS.gene072196.t1.exon3;Parent=MS.gene072196.t1
chr8.1	CDS	82572661	82572894	82572661	ID=cds.MS.gene072196.t1;Parent=MS.gene072196.t1
chr8.1	exon	82573039	82573294	82573039	ID=MS.gene072196.t1.exon4;Parent=MS.gene072196.t1
chr8.1	CDS	82573039	82573294	82573039	ID=cds.MS.gene072196.t1;Parent=MS.gene072196.t1
chr8.1	exon	82573521	82573717	82573521	ID=MS.gene072196.t1.exon5;Parent=MS.gene072196.t1
chr8.1	CDS	82573521	82573717	82573521	ID=cds.MS.gene072196.t1;Parent=MS.gene072196.t1

Gene Sequence

>MS.gene072196

ATGAAGAACATGAATAGCAAACAAACACTTGTTCTACTCATAGTATCTTGCTTCCTAACTTGTGGTAGCTTTGCACAAGATACACTTGTACCAGCTATCATAACATTTGGTGACTCTGCAGTAGATGTAGGAAATAATGATTACCTTCCTACTCTTTTTAAGGCTAATTACCCTCCTTATGGTAGAGATTTTACTAATAAACAACCTACTGGGAGGTTTTGCAATGGCAAGTTAGCTACGGATTTTACAGGTAAATATTGCATCAAACTAATTAGATATTGTGTTTATTGTTGTATTGTATCCTTTATTATATGGTCTTCCATGCCTCTTCATTGAAATCTCAATGTTGGTTTAACCTAACGGCTGATATTTCAATTCTCTCAGCTATTAGATTAATCCAACGACTAAGATTTATTTGAAGGGGATGGAAAGGATCCAAGTCCAATCTTGTGGAAATGTATCGTAGATTTGATTGGATTACACTACCAAATCTACGATACATTTCCACAAGATTTGGTTGAATGGACTTGGATCCTCTATACCAGCAGCGTTGTTACAGCTGTAGGAACCGTTACATTTAGAGAGATACGCTTTCTTTCTTAAATCTAGTGGTCCCTATTGCTGTAGCACCGTATTTCAGATGAAGAGGATCCAAGTCCTACCTAAGGTTGGAGTAGATGTTGCACATATACTCACGCATATAAGTTTCATTGATGTTGGAATGTTTTCTTTTGCAGCTGAAACACTTGGGTTTACGAGTTTTGCACCTGCATATCTTAGTCCACAGGCATCAGGGAAGAACCTCCTTCTTGGTGCTAACTTTGCTTCAGCTGCATCTGGTTATGATGAAAAGGCTGCTACGTTGAATGTAAGTTTGTGATTACAATATATTCATTTGACGTTATTTAAGTCGTGCTTGGTAAAAAATAGTGAATACCTAATAAGTTAGCTTATAGTGGATGAGCTGATAGCGGATAAGCTAACTGATTAAGTTTGTAGAGTTTTGTAAAATTAGCGGTTGAACTAGTTTATAAGTATGAAATGGCATAAATAAGATATATTTATTTTATAATTTAGTTTTTTTCAATTAAGGCTACAAGGGTAAAATTGAAATAAAAAATGATAAACAATAAACTATTTGAATTAAGCTATAAGGCATAAGGCATAAGCTATAAGTTCAAATATGTGGCTTGCCAAACTGACCCTTATTGAAACTATCAAGCCGTTTTAATTTTTTTGAAAATTTGTGTAGTTTATCTATTCAATTAGAAGTTTTTGTTTGACAGTAAGATCGACGAAATCTATTGTTTACAATTAGTTATTAAATGGAGTAACTCAGTTTAAATTTACTCCTCTAGTAACTTGATTTCTCCTATATATATTATGTTTGAACTTATATCTGTTTGGAATGAAAATGTTTTGTTATGAACTTGTTTTTGGTTTCTTCCTATTGGCAGCATGCAATTCCATTATCCCAACAGTTAGAATATTTCAAGGAATATCAAGGCAAGTTGGCTCAGGTTGCTGGCAGTAAAAAGGCTGCATCTATTATCAAGGATTCTTTGTATGTATTGAGTGCTGGCAGCAGTGACTTTGTACAAAATTATTATACCAATCCTTGGATCAACCAAGCAATCACTGTTGATCAGTATTCATCTTACCTGTTAGACTCATTCACAAGCTTTATTAAGGTATTCTGTTATTGCTATTCGTAGAAAACTCATAAGCGCTTTTCATAATCTCTCCTAAGTAGTATATCAAATTTTTATACCATTAGATAAACTGAAATATGTTAATGCAAACAACCCTAATGTTGGTTCTTTGTTGAAACGCAGGGCGTGTATGGATTAGGAGCTAGGAAAATTGGAGTGACCTCACTTCCACCATTGGGTTGCCTACCTGCTGCAAGGACTTTATTTGGTTACCATGAGAATGGTTGTGTCGCAAGAATCAACACTGATGCACAAGGATTTAACAAGAAAGTCAGCTCAGCTGCATCGAATCTTCAAAAGCAACTTCCTGGTCTAAAGATTGTGATTTTTGATATATACAAACCTCTCTTTGACCTTGTTCAAAACCCTTCAAATTTTGGTACGCACCACTTTTATCTCAAATTAACGGCCGAGGTCATCCTAAATTGATTTTGTTATTGCATAATATGAACTGTCTGATCTTGGATTAGCAGCCGAGATCGAAAACTGCGCGTAAATGTTTTTTCTCCACTGCACGGTATTCGGATCCCAACATAAGGACAAGATAATAACTGGAATTATAATGATGTTTTTTTTTTTTAACCTTTTTATGATGTTCTATATAGGTTTTGCTGAGGCAGGGAAAGGGTGCTGTGGTACAGGTCTTGTAGAAACAACATCATTATTGTGCAATCCAAAATCACTAGGAACTTGTTCTAATGCAACTCAGTATGTGTTTTGGGACAGTGTTCATCCTTCAGAAGCTGCTAATCAAGTTCTAGCTGATAACTTAATTATTGCCGGCATAGCTCTTATCACATAA

Protein sequence

>MS.gene072196.t1

MKNMNSKQTLVLLIVSCFLTCGSFAQDTLVPAIITFGDSAVDVGNNDYLPTLFKANYPPYGRDFTNKQPTGRFCNGKLATDFTAETLGFTSFAPAYLSPQASGKNLLLGANFASAASGYDEKAATLNHAIPLSQQLEYFKEYQGKLAQVAGSKKAASIIKDSLYVLSAGSSDFVQNYYTNPWINQAITVDQYSSYLLDSFTSFIKGVYGLGARKIGVTSLPPLGCLPAARTLFGYHENGCVARINTDAQGFNKKVSSAASNLQKQLPGLKIVIFDIYKPLFDLVQNPSNFGFAEAGKGCCGTGLVETTSLLCNPKSLGTCSNATQYVFWDSVHPSEAANQVLADNLIIAGIALIT