Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene072583.t1 | XP_003626160.2 | 98 | 1021 | 19 | 1 | 1 | 1021 | 1 | 1020 | 0.00E+00 | 1762.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene072583.t1 | Q9SFU0 | 72.9 | 820 | 218 | 1 | 202 | 1021 | 223 | 1038 | 0.0e+00 | 1252.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene072583.t1 | G7KWG6 | 98.0 | 1021 | 19 | 1 | 1 | 1021 | 1 | 1020 | 0.0e+00 | 1762.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050786 | MS.gene072583 | 0.960729 | 6.90E-119 | -1.69E-46 |
MS.gene050839 | MS.gene072583 | 0.812547 | 4.01E-51 | -1.69E-46 |
MS.gene056570 | MS.gene072583 | 0.83874 | 2.40E-57 | -1.69E-46 |
MS.gene060810 | MS.gene072583 | 0.821723 | 3.47E-53 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene072583 | MS.gene75647 | PPI |
MS.gene072583 | MS.gene79918 | PPI |
MS.gene072583 | MS.gene045327 | PPI |
MS.gene072583 | MS.gene77559 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene072583.t1 | MTR_7g111710 | 98.629 | 1021 | 13 | 1 | 1 | 1021 | 1 | 1020 | 0.0 | 2061 |
MS.gene072583.t1 | MTR_1g112310 | 34.859 | 1027 | 577 | 22 | 10 | 1020 | 157 | 1107 | 0.0 | 557 |
MS.gene072583.t1 | MTR_6g042060 | 89.855 | 69 | 7 | 0 | 603 | 671 | 1 | 69 | 4.00e-36 | 131 |
MS.gene072583.t1 | MTR_1g068945 | 91.071 | 56 | 5 | 0 | 616 | 671 | 1 | 56 | 2.06e-29 | 112 |
MS.gene072583.t1 | MTR_8g096550 | 90.244 | 41 | 4 | 0 | 631 | 671 | 11 | 51 | 5.44e-19 | 82.0 |
MS.gene072583.t1 | MTR_4g052930 | 22.280 | 579 | 357 | 22 | 304 | 816 | 3 | 554 | 2.30e-17 | 87.8 |
MS.gene072583.t1 | MTR_7g110640 | 21.598 | 676 | 435 | 26 | 298 | 933 | 134 | 754 | 6.66e-11 | 67.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene072583.t1 | AT3G07100 | 63.955 | 1057 | 326 | 11 | 1 | 1021 | 1 | 1038 | 0.0 | 1318 |
MS.gene072583.t1 | AT3G44340 | 36.874 | 819 | 476 | 13 | 227 | 1020 | 291 | 1093 | 3.42e-171 | 530 |
MS.gene072583.t1 | AT3G44340 | 36.874 | 819 | 476 | 13 | 227 | 1020 | 291 | 1093 | 3.42e-171 | 530 |
MS.gene072583.t1 | AT3G44340 | 36.874 | 819 | 476 | 13 | 227 | 1020 | 291 | 1093 | 3.42e-171 | 530 |
MS.gene072583.t1 | AT4G32640 | 34.778 | 1038 | 584 | 23 | 45 | 1019 | 69 | 1076 | 6.62e-168 | 521 |
MS.gene072583.t1 | AT4G32640 | 34.778 | 1038 | 584 | 23 | 45 | 1019 | 69 | 1076 | 6.62e-168 | 521 |
MS.gene072583.t1 | AT3G44340 | 36.650 | 794 | 463 | 12 | 227 | 995 | 291 | 1069 | 1.31e-162 | 507 |
MS.gene072583.t1 | AT3G44340 | 36.650 | 794 | 463 | 12 | 227 | 995 | 291 | 1069 | 1.31e-162 | 507 |
MS.gene072583.t1 | AT2G27460 | 21.875 | 576 | 360 | 21 | 304 | 815 | 3 | 552 | 6.31e-17 | 86.7 |
Find 0 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
51800 | gene | 18413 | 28573 | 18413 | ID=MS.gene072583 |
51800 | mRNA | 18413 | 28573 | 18413 | ID=MS.gene072583.t1;Parent=MS.gene072583 |
51800 | exon | 18413 | 19426 | 18413 | ID=MS.gene072583.t1.exon1;Parent=MS.gene072583.t1 |
51800 | CDS | 18413 | 19426 | 18413 | ID=cds.MS.gene072583.t1;Parent=MS.gene072583.t1 |
51800 | exon | 19510 | 19648 | 19510 | ID=MS.gene072583.t1.exon2;Parent=MS.gene072583.t1 |
51800 | CDS | 19510 | 19648 | 19510 | ID=cds.MS.gene072583.t1;Parent=MS.gene072583.t1 |
51800 | exon | 19980 | 20170 | 19980 | ID=MS.gene072583.t1.exon3;Parent=MS.gene072583.t1 |
51800 | CDS | 19980 | 20170 | 19980 | ID=cds.MS.gene072583.t1;Parent=MS.gene072583.t1 |
51800 | exon | 20952 | 21059 | 20952 | ID=MS.gene072583.t1.exon4;Parent=MS.gene072583.t1 |
51800 | CDS | 20952 | 21059 | 20952 | ID=cds.MS.gene072583.t1;Parent=MS.gene072583.t1 |
51800 | exon | 21180 | 21383 | 21180 | ID=MS.gene072583.t1.exon5;Parent=MS.gene072583.t1 |
51800 | CDS | 21180 | 21383 | 21180 | ID=cds.MS.gene072583.t1;Parent=MS.gene072583.t1 |
51800 | exon | 25032 | 25263 | 25032 | ID=MS.gene072583.t1.exon6;Parent=MS.gene072583.t1 |
51800 | CDS | 25032 | 25263 | 25032 | ID=cds.MS.gene072583.t1;Parent=MS.gene072583.t1 |
51800 | exon | 25693 | 25842 | 25693 | ID=MS.gene072583.t1.exon7;Parent=MS.gene072583.t1 |
51800 | CDS | 25693 | 25842 | 25693 | ID=cds.MS.gene072583.t1;Parent=MS.gene072583.t1 |
51800 | exon | 25986 | 26142 | 25986 | ID=MS.gene072583.t1.exon8;Parent=MS.gene072583.t1 |
51800 | CDS | 25986 | 26142 | 25986 | ID=cds.MS.gene072583.t1;Parent=MS.gene072583.t1 |
51800 | exon | 26875 | 27002 | 26875 | ID=MS.gene072583.t1.exon9;Parent=MS.gene072583.t1 |
51800 | CDS | 26875 | 27002 | 26875 | ID=cds.MS.gene072583.t1;Parent=MS.gene072583.t1 |
51800 | exon | 27078 | 27400 | 27078 | ID=MS.gene072583.t1.exon10;Parent=MS.gene072583.t1 |
51800 | CDS | 27078 | 27400 | 27078 | ID=cds.MS.gene072583.t1;Parent=MS.gene072583.t1 |
51800 | exon | 27478 | 27666 | 27478 | ID=MS.gene072583.t1.exon11;Parent=MS.gene072583.t1 |
51800 | CDS | 27478 | 27666 | 27478 | ID=cds.MS.gene072583.t1;Parent=MS.gene072583.t1 |
51800 | exon | 28343 | 28573 | 28343 | ID=MS.gene072583.t1.exon12;Parent=MS.gene072583.t1 |
51800 | CDS | 28343 | 28573 | 28343 | ID=cds.MS.gene072583.t1;Parent=MS.gene072583.t1 |
Gene Sequence |
Protein sequence |