AlfalfaGEDB | MS.gene057000

M. sativa cultivar XinJiangDaYe / MS.gene057000

KEGG: K02218
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene057000.t1	GAU22001.1	94.3	475	26	1	1	475	1	474	2.90E-256	894

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene057000.t1	Q9CAI5	77.0	469	103	4	1	468	1	465	1.4e-201	703.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene057000.t1	A0A2Z6LS55	94.3	475	26	1	1	475	1	474	2.1e-256	894.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene012266	MS.gene057000	PPI
MS.gene057000	MS.gene025139	PPI
MS.gene057000	MS.gene24338	PPI
MS.gene057000	MS.gene051853	PPI
MS.gene057000	MS.gene27364	PPI
MS.gene057000	MS.gene062739	PPI
MS.gene57575	MS.gene057000	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene057000.t1	MTR_2g099670	99.789	475	1	0	1	475	1	475	979
MS.gene057000.t1	MTR_2g099670	99.275	414	3	0	62	475	10	423	850
MS.gene057000.t1	MTR_8g018310	83.229	477	75	5	1	475	1	474	808
MS.gene057000.t1	MTR_4g126010	75.681	477	91	5	1	475	1	454	706
MS.gene057000.t1	MTR_8g018310	87.863	379	44	2	1	378	1	378	699
MS.gene057000.t1	MTR_2g039930	69.787	470	138	3	1	470	1	466	677
MS.gene057000.t1	MTR_1g069720	60.842	475	156	9	1	468	1	452	554
MS.gene057000.t1	MTR_7g097160	73.639	349	90	1	1	349	1	347	550
MS.gene057000.t1	MTR_1g042280	74.432	352	80	3	1	349	2	346	547
MS.gene057000.t1	MTR_1g075870	69.474	380	109	3	1	380	2	374	536

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene057000.t1	AT1G72710	78.038	469	98	4	1	468	1	465	738
MS.gene057000.t1	AT4G26100	71.550	471	109	5	1	471	1	446	677
MS.gene057000.t1	AT5G57015	69.538	476	102	6	1	475	1	434	664
MS.gene057000.t1	AT2G19470	82.569	327	57	0	1	327	1	327	590
MS.gene057000.t1	AT3G23340	73.371	353	83	3	1	349	1	346	545
MS.gene057000.t1	AT5G44100	81.818	297	54	0	1	297	1	297	541
MS.gene057000.t1	AT5G44100	81.818	297	54	0	1	297	1	297	541
MS.gene057000.t1	AT1G03930	81.481	297	55	0	1	297	1	297	541
MS.gene057000.t1	AT4G14340	65.625	416	120	7	1	411	7	404	539
MS.gene057000.t1	AT4G28540	60.131	459	164	6	1	449	5	454	530

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Find 110 sgRNAs with CRISPR-Local

Find 299 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTGGCAGCGGATCCTT+CGG	0.446110	2.1:+4970243	MS.gene057000:CDS
AAACCAGACAACTTCCTCAT+GGG	0.585296	2.1:+4971653	MS.gene057000:CDS
AAATATTCAGACAAATGAAG+AGG	0.611556	2.1:+4970383	MS.gene057000:CDS
AAATGGATCTAAAGAAGTTA+TGG	0.456366	2.1:+4974194	MS.gene057000:CDS
AAATTCACCTATCACATCAT+CGG	0.605560	2.1:+4974952	MS.gene057000:CDS
AACAACTGCATCACGACTGT+TGG	0.471395	2.1:-4974849	None:intergenic
AACCCTCTCTTCCTCTTGCC+AGG	0.341730	2.1:+4974885	MS.gene057000:CDS
AAGATGGTAGACATGCTGGT+TGG	0.660444	2.1:+4974079	MS.gene057000:CDS
AAGTACGAAGCGAATTCTGA+GGG	0.578038	2.1:-4973375	None:intergenic
AAGTTGTATAAAGTACTTCA+AGG	0.537249	2.1:+4971232	MS.gene057000:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATTCACCTATCACATCAT+CGG	+	chr2.1:4974952-4974971	MS.gene057000:CDS	30.0%
AACAAAACTTGCATGTTTGT+TGG	+	chr2.1:4970483-4970502	MS.gene057000:intron	30.0%
AACCATTAGAAGAGATTTAG+AGG	+	chr2.1:4972580-4972599	MS.gene057000:intron	30.0%
AATCGAAGACATAATCAAAC+TGG	-	chr2.1:4973619-4973638	None:intergenic	30.0%
AATCGATTAACTACCAAATG+TGG	+	chr2.1:4972216-4972235	MS.gene057000:intron	30.0%
ACACCTAAAATAATAGACCA+GGG	-	chr2.1:4973867-4973886	None:intergenic	30.0%
ACATTCATGTAAAAGTGAGT+TGG	+	chr2.1:4970627-4970646	MS.gene057000:intron	30.0%
AGAGGAATTGATGTATCTAA+AGG	+	chr2.1:4970936-4970955	MS.gene057000:intron	30.0%
AGAGTACAATGTTCTTGTAA+TGG	+	chr2.1:4971406-4971425	MS.gene057000:CDS	30.0%
AGATTGCTGATACTTCAAAA+TGG	-	chr2.1:4973645-4973664	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.1	gene	4970204	4975087	4970204	ID=MS.gene057000
chr2.1	mRNA	4970204	4975087	4970204	ID=MS.gene057000.t1;Parent=MS.gene057000
chr2.1	exon	4970204	4970279	4970204	ID=MS.gene057000.t1.exon1;Parent=MS.gene057000.t1
chr2.1	CDS	4970204	4970279	4970204	ID=cds.MS.gene057000.t1;Parent=MS.gene057000.t1
chr2.1	exon	4970379	4970419	4970379	ID=MS.gene057000.t1.exon2;Parent=MS.gene057000.t1
chr2.1	CDS	4970379	4970419	4970379	ID=cds.MS.gene057000.t1;Parent=MS.gene057000.t1
chr2.1	exon	4971190	4971259	4971190	ID=MS.gene057000.t1.exon3;Parent=MS.gene057000.t1
chr2.1	CDS	4971190	4971259	4971190	ID=cds.MS.gene057000.t1;Parent=MS.gene057000.t1
chr2.1	exon	4971369	4971517	4971369	ID=MS.gene057000.t1.exon4;Parent=MS.gene057000.t1
chr2.1	CDS	4971369	4971517	4971369	ID=cds.MS.gene057000.t1;Parent=MS.gene057000.t1
chr2.1	exon	4971602	4971697	4971602	ID=MS.gene057000.t1.exon5;Parent=MS.gene057000.t1
chr2.1	CDS	4971602	4971697	4971602	ID=cds.MS.gene057000.t1;Parent=MS.gene057000.t1
chr2.1	exon	4971795	4971865	4971795	ID=MS.gene057000.t1.exon6;Parent=MS.gene057000.t1
chr2.1	CDS	4971795	4971865	4971795	ID=cds.MS.gene057000.t1;Parent=MS.gene057000.t1
chr2.1	exon	4972877	4972938	4972877	ID=MS.gene057000.t1.exon7;Parent=MS.gene057000.t1
chr2.1	CDS	4972877	4972938	4972877	ID=cds.MS.gene057000.t1;Parent=MS.gene057000.t1
chr2.1	exon	4973036	4973099	4973036	ID=MS.gene057000.t1.exon8;Parent=MS.gene057000.t1
chr2.1	CDS	4973036	4973099	4973036	ID=cds.MS.gene057000.t1;Parent=MS.gene057000.t1
chr2.1	exon	4973184	4973268	4973184	ID=MS.gene057000.t1.exon9;Parent=MS.gene057000.t1
chr2.1	CDS	4973184	4973268	4973184	ID=cds.MS.gene057000.t1;Parent=MS.gene057000.t1
chr2.1	exon	4973357	4973483	4973357	ID=MS.gene057000.t1.exon10;Parent=MS.gene057000.t1
chr2.1	CDS	4973357	4973483	4973357	ID=cds.MS.gene057000.t1;Parent=MS.gene057000.t1
chr2.1	exon	4973612	4973694	4973612	ID=MS.gene057000.t1.exon11;Parent=MS.gene057000.t1
chr2.1	CDS	4973612	4973694	4973612	ID=cds.MS.gene057000.t1;Parent=MS.gene057000.t1
chr2.1	exon	4973776	4973839	4973776	ID=MS.gene057000.t1.exon12;Parent=MS.gene057000.t1
chr2.1	CDS	4973776	4973839	4973776	ID=cds.MS.gene057000.t1;Parent=MS.gene057000.t1
chr2.1	exon	4974073	4974215	4974073	ID=MS.gene057000.t1.exon13;Parent=MS.gene057000.t1
chr2.1	CDS	4974073	4974215	4974073	ID=cds.MS.gene057000.t1;Parent=MS.gene057000.t1
chr2.1	exon	4974791	4975087	4974791	ID=MS.gene057000.t1.exon14;Parent=MS.gene057000.t1
chr2.1	CDS	4974791	4975087	4974791	ID=cds.MS.gene057000.t1;Parent=MS.gene057000.t1

Gene Sequence

>MS.gene057000

ATGGAACCTCGTATTGGTAACAAGTTCCGTCTTGGTCGCAAAATTGGCAGCGGATCCTTCGGCGAGATCTATCTCGGTATCATCATTTTCCTTCAATTTTTCAATCCATCATTATTATTATTTTCAATTATTATTATTATCACTAACTTTAAATTTAATTAATTTGAAAATTCAGGTACAAATATTCAGACAAATGAAGAGGTTGCAATTAAGCTTGTGAGTATTTTTCTGTCATAATTAATTTTGAAACTTTCGATTTTCTTTTATGTTTAATTCCAAAACAAAACTTGCATGTTTGTTGGTCAAAGTTATTGATTCTAGCTCGTAAAGTTGTGATTTTTATGTGTATGTGTATGTTTGGTTTTGGGGTGACAATAATTGATTTCGAGTAAATTGATTATGTAAAGTGATTTGTGTTTGGATACATTCATGTAAAAGTGAGTTGGACAGTAAATTTGAGTGTGAAAATCAATTATTGAATCAAAAGCTACAAATCTTAGCTTCAAGTAGAATCAATTATGGAGGAAAATTCAGTTCTATTTGAAAGCAACAAAACATGTCAAAATCAATTCTACACCTCTAGAATTGATTTTGGCTTCTCCTAAAATGGAACCAAACATTCATGTAGTTTTGTTTATTGTTCAATTTTAATGAGTTATGAGTGTGCAAAATTGAAATAAAGGTGTGCTTTATGGAATGTGTGGTGGAATGTTTTTTTGTTTGAACTTTTGTAGAGGAATTGATGTATCTAAAGGTGCTGATAGGTGTGTGTGACTAAGGTTGTTTGCCTGTGTCTAATTTAATTTGTCGCTTGTGTATTGGTTCGACAACTCAAAAGGGGTGTTTGGCTGTATACTCATTGTCGTTTATCTGCTGTTTTTAATGACATTAATGATAATTAACTTATTGAACAACGACGTTGATTGTTTAGGATTATAGATGTGTTTAATTGATGTTTAACTCTTTCTCATTGCTATTGGATTCAGGAAAATATCAAAACCAAGCATCCTCAGTTGTTGTACGAATCAAAGTTGTATAAAGTACTTCAAGGCGGAAGTAATTTCCTATCTTACCGAATTTCTACCCTTACAATATCTTAGTTTACTTCATTAGACTTCATATTACTCGGATTAAATTTTTTCGGTTGGCTACTTTTATATGGCAGCTGGTATCCCGAATGTGAGATGGTTTGGCGTAGAAGGAGAGTACAATGTTCTTGTAATGGATTTACTGGGACCAAGTCTCGAGGATTTATTCAGTTTTTGTAGTCGGAAATTGTCCCTTAAAACTGTACTCATGCTGGCTGATCAGATGGTAGGATTTCCTTTATTGCTTCGTCTCTTTCCTATTTTTTATTTACCTAAATCTTAATATGGGGAAATCTCTAACTGTTTGCAGATAAATCGAGTTGAATATATTCATTCCAAATCATTTTTACATAGGGACATCAAACCAGACAACTTCCTCATGGGTCTGGGGAGGCGAGCTAATCAAGTATTAGTTAAATTCTCGCTTTTTCATTTAATTTTCTTATTCCTTTCTGTCATCTCTTGGATTGAATATATCCTTTTCAAATTTACCTCTTTTGTAGGTGTATGCCATTGACTTCGGTCTTGCTAAAAAATACAGGGACACCTCTACCCATCAGCATATACCTTACAGGTATTTTCTGCCATTTTTATTTAGTTTTTGTGAATTTATGTGTAATGGCCTAGTTGAATGTTGAAGCAAGTTTTAACTATATGAAATTAGAGGAAATTAGGACAACTATAATTTGATAATGACAAATGCATTATCTGAAACTTGAAAGTATTGTTTGTTGCATGACTTAACTATTCACTGGGAGTCGTTTATAATAAAAGTATTAGCTTTAATTCAGGTGATGACATTAGGTGGTGTTTTTTGTTTGGTTTTGTGTTTCATGCAGAGATGAATCTCTTGTTTACATTGTTGGAAGATTAAAAAATAATCTATTTCTCTCTAGAGCTTTGATGTTTAGAATACTATTGATAAATCGATTAACTACCAAATGTGGATGTGTAACAGAGAATTGCTGGAAGAATTTAATTTACCCACTATAGTAACAAGTTATATGAAAATTGGTAGTTCTGCACAGACAATCAATCAAGTCTAGATCCTTTTTGTCCCAATTGTGGGTGCTAGTTTCTATTTTTGTATTTGTGAAAATTTGTTTCTATACTTCGTGCATAACTAGCTGTTGTTAATTGTACAATAAGTAAAATCTTTTAAGTAACTTCTTTAAAGATTGTTATAATCAATAGAAAGAAAATTAAGGTATTTTTCAACAGAGAAAATGGCGAGGTCTTAGGTGGATAGTCTAATAACTACAGGGAGGTGAAAGAAAACTGTAGGACAAACCATTAGAAGAGATTTAGAGGATATTATTTTCGACCTAATATGTGATAGGACTTTGCGGTGTCAATTGATTCATGGAGCCAATCTCACCTGGTCGAAAAAGGCTTAGATGTTGGGTTGATTGTGTTATTCATCTTTATTTATTTTAGTTTACTTTATTCACTATTTTATCGAAAAACTTTATAATAAGTTTCTATTTATTGATTAAAATAGTACTTGCTTATTGTATTGTAGTCCCCAGTAATCAACTTAGTTGTGGGTTTTCGCTGAATTTTACTTGCTTATAATCCTTTTCAGAGAGAATAAGAACTTGACAGGAACTGCTAGATATGCTAGTATGAATACACATCTTGGAATTGGTACGTTCACACATCTCTTCTTCCAACTCACTTGCCTTTGTATCTATTGTTGGCGTTTGATTCTGAACTTTGGGAATGTTTGATCATTATTTATCAGAGCAAAGCCGTAGGGACGACTTAGAATCACTTGGATATGTTCTTATGTACTTTCTGAGAGGAAGGTATTTATCCTTGCCATTATGTTGTTTTATCTTCCTTATCAACTGCTTTTAAATTAATTATTTATTTACTTGGTATTTCTACAGCCTTCCATGGCAGGGATTAAAAGCAGGTACTAAAAAGCAGAAGTACGAGAAAATCAGTGAGAAGAAAGTTTCTACTTCTATTGAGGTACAACTGTATTTTAAAATATTGTTTTGGTACATACTATGTTTCAAACTCCTTTATCCTAATAAAGCGTGGCTTGCTTTTTTGTTAGTCCTTGTGTCGTGGCTACCCCTCAGAATTCGCTTCGTACTTCCATTACTGTCGGTCATTGCGGTTTGATGATAAACCAGATTATGCATATCTGAAAAGGCTGTTTCGCGACCTTTTCATTCGTGAAGGTTTAAGCCTCTTTGTTTTCTTATTTATATTTTACTTTTGAAATTATTAAGGTCTTTGATAACTAGATGGTCGGGTTTTGAATTTTAATGTTGTCTGTGTTTTGGCTTGTATTCTTTTGTTGCTGCAGGATTCCAGTTTGATTATGTCTTCGATTGGACCATTTTGAAGTATCAGCAATCTCAAATTGCCACTCCTTCTGCACGTGCCATTGTAAGTGGCGGTGTGCTATCTGGTAACGTTACTTGTTATTTTGTTTAGGTTAAATTGTCTTACTTAAGTGGCATATTGCAGGGTTCTGGTGCTGGGCCAAGTTCTGGCTTACCACCAGCTGTTGTGAGTGCTGAGAGACCATCAGGTATAATTATATTTACTTTTACGACCCTGGTCTATTATTTTAGGTGTGTGGCTTCATACTTTCTTAGCTTAACAATGTGTTGGACATTCTTTGTATATTTCTTGTTCTTCTATGTGTTTCATTTATCACAGTTTTTCCATTTCTTACTGTACTATTAGTATTTTTAATGTTTTTTTTTAATGGGGAAATTTCTTTTTTTTTTTTGAAAAATTAATGGGGAAATTTCTGTTTAGGTGGGGAAGATGGTAGACATGCTGGTTGGTCTTCATCAGATCCTGCTCGTAGAAGAAACTCTGGACCTATTGTAAATGATGGAAACTTGTCTAGACAAAAAGCACCGGTACCAAGTGACTCAAATGGATCTAAAGAAGTTATGGTGAGTATATTCATTTATGGGACCACTTATGACCAAGTTATCTCTTGTAGAAAGCTACATGATGATGTTTTTTTTTAACTATATTAAGCATACCACCTTTCTCATTACTTTCTGTTTAAGAAAATCAACGCTGTATTTCAAAATGGAAAAGAAATTATGAAGCTTCCCTTTTTTGCTTCTTTTCTTCTGTTCACAACTAGATTTATAAAGTATTGGCTGTTCCATGTGTGTCTATGTGCACAATTGAAGCATGAGCTAAGCAATTAACGCAAATATTTTTCAGAAGTCAGCTTTGTTTAGAAAAGTTATATATCATTCTTTGGACTCCGCTTCTTCAGATTTGCTACATCTAAGAGTTTTGTTCTGTGAATATACTTAGTAGTTTTTGCTTTTCAGCTGAAAGAAACTTAGTGTGTTAGTACTTTTGGGTTAGTTATGTCCTATGTGTTTGCCGAGGTTAATTCATGATTTTTGTCATGTATGACATAGCCTGCTTGTTGTCACAATACCCTGATTTTTTTTATTGCAGCTAGTTTTCATGTTATTTTTGACATTTTGGTCTATGGTTTATGCAGTTGTCTAGTTCTAATTTCTTCCGGCCTAGTGGATCTACAAGACGAGTAGGTGCTGTTTCCAACAGTCGTGATGCAGTTGTTAGCAGTGAAATTGAACCCTCTCTTCCTCTTGCCAGGGATGGTAGTCCTGGAGCACTCCTTAAAACCTCTGGTGCTCAAAGAAATTCACCTATCACATCATCGGAGCACAAAGCAACAACATCTTCTGGCAGAAACACATCAAACATGAAGAATTTTGAGTCAACTATCCGAGGTATTGAGAGCCTGAATTTCAATGACGAGAAGGTACAGTATTAG

Protein sequence

>MS.gene057000.t1

MEPRIGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENIKTKHPQLLYESKLYKVLQGGTGIPNVRWFGVEGEYNVLVMDLLGPSLEDLFSFCSRKLSLKTVLMLADQMINRVEYIHSKSFLHRDIKPDNFLMGLGRRANQVYAIDFGLAKKYRDTSTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVSTSIESLCRGYPSEFASYFHYCRSLRFDDKPDYAYLKRLFRDLFIREGFQFDYVFDWTILKYQQSQIATPSARAIGSGAGPSSGLPPAVVSAERPSGGEDGRHAGWSSSDPARRRNSGPIVNDGNLSRQKAPVPSDSNGSKEVMLSSSNFFRPSGSTRRVGAVSNSRDAVVSSEIEPSLPLARDGSPGALLKTSGAQRNSPITSSEHKATTSSGRNTSNMKNFESTIRGIESLNFNDEKVQY