AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene057000

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene057000.t1 MTR_2g099670 99.789 475 1 0 1 475 1 475 0.0 979
MS.gene057000.t1 MTR_2g099670 99.275 414 3 0 62 475 10 423 0.0 850
MS.gene057000.t1 MTR_8g018310 83.229 477 75 5 1 475 1 474 0.0 808
MS.gene057000.t1 MTR_4g126010 75.681 477 91 5 1 475 1 454 0.0 706
MS.gene057000.t1 MTR_8g018310 87.863 379 44 2 1 378 1 378 0.0 699
MS.gene057000.t1 MTR_2g039930 69.787 470 138 3 1 470 1 466 0.0 677
MS.gene057000.t1 MTR_1g069720 60.842 475 156 9 1 468 1 452 0.0 554
MS.gene057000.t1 MTR_7g097160 73.639 349 90 1 1 349 1 347 0.0 550
MS.gene057000.t1 MTR_1g042280 74.432 352 80 3 1 349 2 346 0.0 547
MS.gene057000.t1 MTR_1g075870 69.474 380 109 3 1 380 2 374 0.0 536
MS.gene057000.t1 MTR_2g039930 67.352 389 123 3 82 470 1 385 0.0 535
MS.gene057000.t1 MTR_1g075870 78.135 311 65 1 1 308 2 312 0.0 525
MS.gene057000.t1 MTR_6g087070 63.007 419 139 7 1 411 1 411 0.0 516
MS.gene057000.t1 MTR_8g102930 63.706 394 132 5 1 392 1 385 1.22e-179 509
MS.gene057000.t1 MTR_1g042280 77.551 294 56 3 40 330 9 295 1.75e-170 482
MS.gene057000.t1 MTR_3g110180 66.667 342 107 2 1 342 1 335 5.47e-168 480
MS.gene057000.t1 MTR_3g110180 66.667 342 106 3 1 342 1 334 3.40e-166 476
MS.gene057000.t1 MTR_1g004990 66.972 327 107 1 1 327 1 326 2.45e-165 473
MS.gene057000.t1 MTR_0492s0030 66.172 337 108 2 1 335 1 333 1.58e-164 469
MS.gene057000.t1 MTR_0543s0020 66.172 337 108 2 1 335 1 333 1.58e-164 469
MS.gene057000.t1 MTR_1g075870 75.824 273 62 2 58 330 2 270 2.07e-154 440
MS.gene057000.t1 MTR_7g097160 67.421 221 70 1 144 364 25 243 9.75e-101 305
MS.gene057000.t1 MTR_7g006030 38.710 279 154 5 9 273 37 312 6.98e-60 207
MS.gene057000.t1 MTR_1g007150 38.462 273 157 5 9 273 124 393 3.84e-58 204
MS.gene057000.t1 MTR_3g110240 38.828 273 156 5 9 273 121 390 5.41e-58 203
MS.gene057000.t1 MTR_7g085540 38.062 289 161 6 4 277 140 425 1.47e-57 202
MS.gene057000.t1 MTR_1g116210 37.770 278 161 5 9 277 119 393 1.85e-57 201
MS.gene057000.t1 MTR_8g014050 36.879 282 156 7 9 273 128 404 3.82e-52 187
MS.gene057000.t1 MTR_7g116400 58.462 65 26 1 82 145 3 67 4.80e-18 79.3
MS.gene057000.t1 MTR_5g022030 26.957 230 151 7 2 223 92 312 5.11e-13 71.6
MS.gene057000.t1 MTR_5g022030 26.957 230 151 7 2 223 92 312 5.53e-13 71.6
MS.gene057000.t1 MTR_7g106710 27.928 222 126 10 9 215 135 337 7.92e-12 67.4
MS.gene057000.t1 MTR_5g007590 42.667 75 35 1 71 145 53 119 9.17e-12 62.8
MS.gene057000.t1 MTR_4g128820 31.447 159 98 5 1 153 2 155 9.38e-12 67.4
MS.gene057000.t1 MTR_3g466400 27.917 240 118 11 1 214 5 215 1.77e-11 66.6
MS.gene057000.t1 MTR_7g113490 24.781 343 186 13 8 324 67 363 3.01e-11 66.2
MS.gene057000.t1 MTR_5g092815 27.311 238 152 9 9 240 91 313 4.70e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene057000.t1 AT1G72710 78.038 469 98 4 1 468 1 465 0.0 738
MS.gene057000.t1 AT4G26100 71.550 471 109 5 1 471 1 446 0.0 677
MS.gene057000.t1 AT5G57015 69.538 476 102 6 1 475 1 434 0.0 664
MS.gene057000.t1 AT2G19470 82.569 327 57 0 1 327 1 327 0.0 590
MS.gene057000.t1 AT3G23340 73.371 353 83 3 1 349 1 346 0.0 545
MS.gene057000.t1 AT5G44100 81.818 297 54 0 1 297 1 297 0.0 541
MS.gene057000.t1 AT5G44100 81.818 297 54 0 1 297 1 297 0.0 541
MS.gene057000.t1 AT1G03930 81.481 297 55 0 1 297 1 297 0.0 541
MS.gene057000.t1 AT4G14340 65.625 416 120 7 1 411 7 404 0.0 539
MS.gene057000.t1 AT4G28540 60.131 459 164 6 1 449 5 454 0.0 530
MS.gene057000.t1 AT5G43320 64.455 422 119 6 1 406 1 407 0.0 530
MS.gene057000.t1 AT1G04440 70.286 350 103 1 1 349 1 350 0.0 525
MS.gene057000.t1 AT4G14340 74.775 333 75 3 1 330 7 333 0.0 525
MS.gene057000.t1 AT5G43320 73.780 328 84 1 1 328 1 326 0.0 513
MS.gene057000.t1 AT5G43320 73.780 328 84 1 1 328 1 326 0.0 513
MS.gene057000.t1 AT3G23340 72.973 333 79 3 21 349 7 332 3.65e-180 511
MS.gene057000.t1 AT4G28860 68.272 353 106 4 1 352 1 348 4.38e-178 504
MS.gene057000.t1 AT4G28880 72.611 314 86 0 1 314 1 314 4.80e-178 505
MS.gene057000.t1 AT4G28880 72.611 314 86 0 1 314 1 314 4.80e-178 505
MS.gene057000.t1 AT4G28880 72.611 314 86 0 1 314 1 314 4.80e-178 505
MS.gene057000.t1 AT4G28880 72.611 314 86 0 1 314 1 314 4.80e-178 505
MS.gene057000.t1 AT4G28860 74.351 308 79 0 1 308 1 308 1.10e-177 504
MS.gene057000.t1 AT4G08800 70.164 305 59 2 1 305 1 273 3.24e-158 450
MS.gene057000.t1 AT2G25760 39.721 287 156 5 4 273 100 386 1.42e-63 218
MS.gene057000.t1 AT2G25760 39.024 287 155 6 4 273 100 383 1.67e-60 210
MS.gene057000.t1 AT3G03940 37.716 289 162 6 4 277 133 418 3.99e-57 201
MS.gene057000.t1 AT5G18190 37.370 289 163 6 4 277 123 408 1.50e-56 199
MS.gene057000.t1 AT5G18190 37.370 289 163 6 4 277 123 408 1.50e-56 199
MS.gene057000.t1 AT3G13670 36.396 283 163 5 9 277 137 416 8.87e-56 197
MS.gene057000.t1 AT2G17890 26.667 225 148 8 7 223 106 321 4.99e-13 71.6
MS.gene057000.t1 AT3G06030 28.054 221 130 8 8 213 67 273 3.09e-12 69.3
MS.gene057000.t1 AT3G50530 26.271 236 133 10 5 219 144 359 1.08e-11 67.4
MS.gene057000.t1 AT4G36070 26.244 221 146 7 7 219 69 280 1.28e-11 67.0
MS.gene057000.t1 AT4G36070 26.244 221 146 7 7 219 69 280 1.40e-11 67.0
MS.gene057000.t1 AT5G21326 27.311 238 121 11 1 214 6 215 1.92e-11 66.2
MS.gene057000.t1 AT1G09000 27.313 227 136 8 1 213 63 274 2.23e-11 66.6
MS.gene057000.t1 AT1G09000 27.313 227 136 8 1 213 63 274 2.67e-11 66.2

Find 110 sgRNAs with CRISPR-Local

Find 299 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTGGTGCTGGGCCAAGTTC+TGG 0.217410 2.1:+4973779 MS.gene057000:CDS
TGTTCTTGTAATGGATTTAC+TGG 0.238900 2.1:+4971415 MS.gene057000:CDS
ATATTGCAGGGTTCTGGTGC+TGG 0.265600 2.1:+4973767 MS.gene057000:intron
TTCCGTCTTGGTCGCAAAAT+TGG 0.267298 2.1:+4970228 MS.gene057000:CDS
CCTTCTCGTCATTGAAATTC+AGG 0.271965 2.1:-4975054 None:intergenic
AGTGGCATATTGCAGGGTTC+TGG 0.307259 2.1:+4973761 MS.gene057000:intron
GTGAGATGGTTTGGCGTAGA+AGG 0.320994 2.1:+4971383 MS.gene057000:CDS
CCCATCAGCATATACCTTAC+AGG 0.322211 2.1:+4971844 MS.gene057000:CDS
TGTCTAGTTCTAATTTCTTC+CGG 0.335964 2.1:+4974792 MS.gene057000:CDS
AACCCTCTCTTCCTCTTGCC+AGG 0.341730 2.1:+4974885 MS.gene057000:CDS
CGCCAAACCATCTCACATTC+GGG 0.397128 2.1:-4971376 None:intergenic
AAGTTTCCATCATTTACAAT+AGG 0.399390 2.1:-4974138 None:intergenic
ATGAATACACATCTTGGAAT+TGG 0.405893 2.1:+4972917 MS.gene057000:CDS
AATCGAAGACATAATCAAAC+TGG 0.405895 2.1:-4973616 None:intergenic
CTTGCCAGGGATGGTAGTCC+TGG 0.411315 2.1:+4974899 MS.gene057000:CDS
AGATTGCTGATACTTCAAAA+TGG 0.414687 2.1:-4973642 None:intergenic
AGACAACTTCCTCATGGGTC+TGG 0.419334 2.1:+4971658 MS.gene057000:CDS
CACAAAGCAACAACATCTTC+TGG 0.430594 2.1:+4974977 MS.gene057000:CDS
TATTGCAGGGTTCTGGTGCT+GGG 0.431101 2.1:+4973768 MS.gene057000:intron
ACGCCAAACCATCTCACATT+CGG 0.433060 2.1:-4971377 None:intergenic
TTCTGTTTAGGTGGGGAAGA+TGG 0.440368 2.1:+4974063 MS.gene057000:intron
AGAGTACAATGTTCTTGTAA+TGG 0.440882 2.1:+4971406 MS.gene057000:CDS
CAGATTATGCATATCTGAAA+AGG 0.441444 2.1:+4973433 MS.gene057000:CDS
CTGAATAAATCCTCGAGACT+TGG 0.445414 2.1:-4971440 None:intergenic
AAAATTGGCAGCGGATCCTT+CGG 0.446110 2.1:+4970243 MS.gene057000:CDS
TTTCTACAGCCTTCCATGGC+AGG 0.446289 2.1:+4973175 MS.gene057000:intron
GAAAGTTTCTACTTCTATTG+AGG 0.449245 2.1:+4973247 MS.gene057000:CDS
GACAACTTCCTCATGGGTCT+GGG 0.451955 2.1:+4971659 MS.gene057000:CDS
GCTAGTATGAATACACATCT+TGG 0.455950 2.1:+4972911 MS.gene057000:CDS
AAATGGATCTAAAGAAGTTA+TGG 0.456366 2.1:+4974194 MS.gene057000:CDS
TCTGGACCTATTGTAAATGA+TGG 0.460186 2.1:+4974132 MS.gene057000:CDS
AGTTTGATTATGTCTTCGAT+TGG 0.464178 2.1:+4973618 MS.gene057000:CDS
ATCCCGAATGTGAGATGGTT+TGG 0.467028 2.1:+4971374 MS.gene057000:CDS
AGAGAGAATAAGAACTTGAC+AGG 0.470574 2.1:+4972875 MS.gene057000:intron
AACAACTGCATCACGACTGT+TGG 0.471395 2.1:-4974849 None:intergenic
GATCCAATGGAACCTCGTAT+TGG 0.480777 2.1:+4970198 None:intergenic
CTCTCAGCACTCACAACAGC+TGG 0.493489 2.1:-4973809 None:intergenic
ACCTGTAAGGTATATGCTGA+TGG 0.497924 2.1:-4971845 None:intergenic
TTACCAATACGAGGTTCCAT+TGG 0.498879 2.1:-4970201 None:intergenic
ACCCTCTCTTCCTCTTGCCA+GGG 0.500811 2.1:+4974886 MS.gene057000:CDS
GTACAACAACTGAGGATGCT+TGG 0.501916 2.1:-4971203 None:intergenic
TTTAGCAAGACCGAAGTCAA+TGG 0.503927 2.1:-4971802 None:intergenic
GGAGCACTCCTTAAAACCTC+TGG 0.508111 2.1:+4974920 MS.gene057000:CDS
AGACCCATGAGGAAGTTGTC+TGG 0.513231 2.1:-4971656 None:intergenic
TCTCTTCCTCTTGCCAGGGA+TGG 0.513542 2.1:+4974890 MS.gene057000:CDS
CCAGAGTTTCTTCTACGAGC+AGG 0.515799 2.1:-4974114 None:intergenic
AATGGCAGAAAATACCTGTA+AGG 0.515910 2.1:-4971858 None:intergenic
CCATTTGAGTCACTTGGTAC+CGG 0.517246 2.1:-4974177 None:intergenic
TTATGTACTTTCTGAGAGGA+AGG 0.517973 2.1:+4973078 MS.gene057000:CDS
TTAAACCTTCACGAATGAAA+AGG 0.521136 2.1:-4973467 None:intergenic
GCTGGTGGTAAGCCAGAACT+TGG 0.528434 2.1:-4973791 None:intergenic
TTAGATCCATTTGAGTCACT+TGG 0.530625 2.1:-4974183 None:intergenic
CCGGTACCAAGTGACTCAAA+TGG 0.531968 2.1:+4974177 MS.gene057000:CDS
GTGAGTGCTGAGAGACCATC+AGG 0.536378 2.1:+4973818 MS.gene057000:CDS
AAGTTGTATAAAGTACTTCA+AGG 0.537249 2.1:+4971232 MS.gene057000:CDS
TTGTGCTCCGATGATGTGAT+AGG 0.538146 2.1:-4974959 None:intergenic
GGGGAAGATGGTAGACATGC+TGG 0.538151 2.1:+4974075 MS.gene057000:CDS
ATTGGTAACAAGTTCCGTCT+TGG 0.539261 2.1:+4970216 MS.gene057000:CDS
TAGGTGTATGCCATTGACTT+CGG 0.549001 2.1:+4971792 MS.gene057000:intron
TCTAATTTCTTCCGGCCTAG+TGG 0.549750 2.1:+4974800 MS.gene057000:CDS
CCTTAAAACTGTACTCATGC+TGG 0.552041 2.1:+4971484 MS.gene057000:CDS
CAAACCAGACAACTTCCTCA+TGG 0.552695 2.1:+4971652 MS.gene057000:CDS
TCCATTACTGTCGGTCATTG+CGG 0.553748 2.1:+4973397 MS.gene057000:CDS
TTCTACAGCCTTCCATGGCA+GGG 0.557366 2.1:+4973176 MS.gene057000:intron
TGCTCCAGGACTACCATCCC+TGG 0.557499 2.1:-4974903 None:intergenic
AGGTATATGCTGATGGGTAG+AGG 0.560253 2.1:-4971838 None:intergenic
TGAATTTCTTTGAGCACCAG+AGG 0.572897 2.1:-4974936 None:intergenic
CTTACAATGGCACGTGCAGA+AGG 0.576744 2.1:-4973677 None:intergenic
ACCGCAATGACCGACAGTAA+TGG 0.577382 2.1:-4973398 None:intergenic
AAGTACGAAGCGAATTCTGA+GGG 0.578038 2.1:-4973375 None:intergenic
ACAACTTCCTCATGGGTCTG+GGG 0.578843 2.1:+4971660 MS.gene057000:CDS
CCATGGCAGGGATTAAAAGC+AGG 0.580774 2.1:+4973188 MS.gene057000:CDS
CTTCGTACTTCCATTACTGT+CGG 0.580895 2.1:+4973388 MS.gene057000:CDS
CCTGTAAGGTATATGCTGAT+GGG 0.582308 2.1:-4971844 None:intergenic
CCTGCTCGTAGAAGAAACTC+TGG 0.583504 2.1:+4974114 MS.gene057000:CDS
GGTATTTCTACAGCCTTCCA+TGG 0.584276 2.1:+4973171 MS.gene057000:intron
AAACCAGACAACTTCCTCAT+GGG 0.585296 2.1:+4971653 MS.gene057000:CDS
GTGATTCTAAGTCGTCCCTA+CGG 0.586077 2.1:-4973043 None:intergenic
CTGGTATCCCGAATGTGAGA+TGG 0.591046 2.1:+4971369 MS.gene057000:CDS
GTCTTGTAGATCCACTAGGC+CGG 0.591531 2.1:-4974811 None:intergenic
TCCTTCGGCGAGATCTATCT+CGG 0.591939 2.1:+4970258 MS.gene057000:CDS
ATCCCTGGCAAGAGGAAGAG+AGG 0.593199 2.1:-4974888 None:intergenic
GTTCTTGTAATGGATTTACT+GGG 0.597182 2.1:+4971416 MS.gene057000:CDS
ACTCATGCTGGCTGATCAGA+TGG 0.600494 2.1:+4971496 MS.gene057000:CDS
TTTATCAGAGCAAAGCCGTA+GGG 0.600968 2.1:+4973028 MS.gene057000:intron
AAATTCACCTATCACATCAT+CGG 0.605560 2.1:+4974952 MS.gene057000:CDS
AATGGCACGTGCAGAAGGAG+TGG 0.609634 2.1:-4973672 None:intergenic
AAATATTCAGACAAATGAAG+AGG 0.611556 2.1:+4970383 MS.gene057000:CDS
TGAGGGGTAGCCACGACACA+AGG 0.615164 2.1:-4973358 None:intergenic
CTTGGTCGCAAAATTGGCAG+CGG 0.616503 2.1:+4970234 MS.gene057000:CDS
CCTGAATTTCAATGACGAGA+AGG 0.618175 2.1:+4975054 MS.gene057000:CDS
GGACTACCATCCCTGGCAAG+AGG 0.621909 2.1:-4974896 None:intergenic
GAAGTACGAAGCGAATTCTG+AGG 0.623073 2.1:-4973376 None:intergenic
ATTTATCAGAGCAAAGCCGT+AGG 0.626916 2.1:+4973027 MS.gene057000:intron
TCCCTGGCAAGAGGAAGAGA+GGG 0.628185 2.1:-4974887 None:intergenic
TCAGCACTCACAACAGCTGG+TGG 0.637376 2.1:-4973806 None:intergenic
CGGAACTTGTTACCAATACG+AGG 0.640695 2.1:-4970210 None:intergenic
AATTCAGGCTCTCAATACCT+CGG 0.640782 2.1:-4975039 None:intergenic
ACTTCCTCATGGGTCTGGGG+AGG 0.643093 2.1:+4971663 MS.gene057000:CDS
ACTCGTCTTGTAGATCCACT+AGG 0.645996 2.1:-4974815 None:intergenic
GTTCTTATGTACTTTCTGAG+AGG 0.648204 2.1:+4973074 MS.gene057000:CDS
AGTGGATCTACAAGACGAGT+AGG 0.648511 2.1:+4974818 MS.gene057000:CDS
TTTACTGGGACCAAGTCTCG+AGG 0.649748 2.1:+4971430 MS.gene057000:CDS
AAGATGGTAGACATGCTGGT+TGG 0.660444 2.1:+4974079 MS.gene057000:CDS
ACCGAGATAGATCTCGCCGA+AGG 0.660795 2.1:-4970259 None:intergenic
AGGGACGACTTAGAATCACT+TGG 0.661964 2.1:+4973047 MS.gene057000:CDS
TTTGATTCGTACAACAACTG+AGG 0.675406 2.1:-4971211 None:intergenic
CTCGCCTCCCCAGACCCATG+AGG 0.716204 2.1:-4971667 None:intergenic
TTGTATAAAGTACTTCAAGG+CGG 0.746900 2.1:+4971235 MS.gene057000:CDS
AGTACGAAGCGAATTCTGAG+GGG 0.755113 2.1:-4973374 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTGAAAATAATAATAATGA+TGG - chr2.1:4970312-4970331 None:intergenic 10.0%
!!! TGTATTTTAAAATATTGTTT+TGG + chr2.1:4973276-4973295 MS.gene057000:intron 10.0%
!!! TTTAATGTTTTTTTTTAATG+GGG + chr2.1:4974002-4974021 MS.gene057000:intron 10.0%
!!! TTTAATTAATTTGAAAATTC+AGG + chr2.1:4970357-4970376 MS.gene057000:intron 10.0%
!!! TTTTACTTTTGAAATTATTA+AGG + chr2.1:4973513-4973532 MS.gene057000:intron 10.0%
!!! TTTTTTTTGAAAAATTAATG+GGG + chr2.1:4974036-4974055 MS.gene057000:intron 10.0%
!! AAAAGTTATATATCATTCTT+TGG + chr2.1:4974516-4974535 MS.gene057000:intron 15.0%
!! AATCAATAGAAAGAAAATTA+AGG + chr2.1:4972477-4972496 MS.gene057000:intron 15.0%
!! ATATAAATAAGAAAACAAAG+AGG - chr2.1:4973494-4973513 None:intergenic 15.0%
!! ATTTACCTAAATCTTAATAT+GGG + chr2.1:4971558-4971577 MS.gene057000:intron 15.0%
!! GATTTAGGTAAATAAAAAAT+AGG - chr2.1:4971551-4971570 None:intergenic 15.0%
!! TATTTACCTAAATCTTAATA+TGG + chr2.1:4971557-4971576 MS.gene057000:intron 15.0%
!! TCACAAAAACTAAATAAAAA+TGG - chr2.1:4971879-4971898 None:intergenic 15.0%
!!! TTTTAACTATATGAAATTAG+AGG + chr2.1:4971936-4971955 MS.gene057000:intron 15.0%
!! AAGTAAACTAAGATATTGTA+AGG - chr2.1:4971291-4971310 None:intergenic 20.0%
!! AGTAAACTAAGATATTGTAA+GGG - chr2.1:4971290-4971309 None:intergenic 20.0%
!! ATATGAAATTAGAGGAAATT+AGG + chr2.1:4971944-4971963 MS.gene057000:intron 20.0%
!! CAACTAGATTTATAAAGTAT+TGG + chr2.1:4974409-4974428 MS.gene057000:intron 20.0%
!! GTAAATATAATTATACCTGA+TGG - chr2.1:4973836-4973855 None:intergenic 20.0%
!! GTAACAAGTTATATGAAAAT+TGG + chr2.1:4972284-4972303 MS.gene057000:intron 20.0%
!! TTTACCTAAATCTTAATATG+GGG + chr2.1:4971559-4971578 MS.gene057000:intron 20.0%
!!! AAAAGTATTAGCTTTAATTC+AGG + chr2.1:4972061-4972080 MS.gene057000:intron 20.0%
!!! ATATAACTTGTTACTATAGT+GGG - chr2.1:4972278-4972297 None:intergenic 20.0%
!!! ATTCCAAATCATTTTTACAT+AGG + chr2.1:4971624-4971643 MS.gene057000:CDS 20.0%
!!! ATTTATTCAGTTTTTGTAGT+CGG + chr2.1:4971453-4971472 MS.gene057000:CDS 20.0%
!!! TAATTTAAAAGCAGTTGATA+AGG - chr2.1:4973136-4973155 None:intergenic 20.0%
!!! TCATGTTATTTTTGACATTT+TGG + chr2.1:4974752-4974771 MS.gene057000:intron 20.0%
!!! TTACTCGGATTAAATTTTTT+CGG + chr2.1:4971325-4971344 MS.gene057000:intron 20.0%
!!! TTCCAAATCATTTTTACATA+GGG + chr2.1:4971625-4971644 MS.gene057000:CDS 20.0%
!!! TTTTGTGAATTTATGTGTAA+TGG + chr2.1:4971891-4971910 MS.gene057000:intron 20.0%
! AAATATTCAGACAAATGAAG+AGG + chr2.1:4970383-4970402 MS.gene057000:CDS 25.0%
! AACAAAACTACATGAATGTT+TGG - chr2.1:4970819-4970838 None:intergenic 25.0%
! AAGTTTCCATCATTTACAAT+AGG - chr2.1:4974141-4974160 None:intergenic 25.0%
! ACTAATAGTACAGTAAGAAA+TGG - chr2.1:4973979-4973998 None:intergenic 25.0%
! AGAAGAAAAGAAGCAAAAAA+GGG - chr2.1:4974384-4974403 None:intergenic 25.0%
! AGCTGCAATAAAAAAAATCA+GGG - chr2.1:4974727-4974746 None:intergenic 25.0%
! AGGAAGATAAAACAACATAA+TGG - chr2.1:4973116-4973135 None:intergenic 25.0%
! AGTGTGCAAAATTGAAATAA+AGG + chr2.1:4970864-4970883 MS.gene057000:intron 25.0%
! ATATTGTAAGGGTAGAAATT+CGG - chr2.1:4971279-4971298 None:intergenic 25.0%
! ATGGTGAGTATATTCATTTA+TGG + chr2.1:4974213-4974232 MS.gene057000:intron 25.0%
! ATTTCCCCATATTAAGATTT+AGG - chr2.1:4971566-4971585 None:intergenic 25.0%
! CAAAAATCATGAATTAACCT+CGG - chr2.1:4974670-4974689 None:intergenic 25.0%
! CAAAAGAGGTAAATTTGAAA+AGG - chr2.1:4971772-4971791 None:intergenic 25.0%
! GTTAAATTGTCTTACTTAAG+TGG + chr2.1:4973743-4973762 MS.gene057000:intron 25.0%
! TAAACAGAAAGTAATGAGAA+AGG - chr2.1:4974314-4974333 None:intergenic 25.0%
! TAGCTGCAATAAAAAAAATC+AGG - chr2.1:4974728-4974747 None:intergenic 25.0%
! TCATTAGACTTCATATTACT+CGG + chr2.1:4971310-4971329 MS.gene057000:intron 25.0%
! TGGTGAGTATATTCATTTAT+GGG + chr2.1:4974214-4974233 MS.gene057000:intron 25.0%
! TTTATGTGTATGTGTATGTT+TGG + chr2.1:4970542-4970561 MS.gene057000:intron 25.0%
!! AAGTTGTATAAAGTACTTCA+AGG + chr2.1:4971232-4971251 MS.gene057000:CDS 25.0%
!! TATGTAAAGTGATTTGTGTT+TGG + chr2.1:4970602-4970621 MS.gene057000:intron 25.0%
!! TTCAAATTTACCTCTTTTGT+AGG + chr2.1:4971773-4971792 MS.gene057000:intron 25.0%
!! TTTTAATGTTGTCTGTGTTT+TGG + chr2.1:4973566-4973585 MS.gene057000:intron 25.0%
!!! ATGATGGATTGAAAAATTGA+AGG - chr2.1:4970296-4970315 None:intergenic 25.0%
!!! ATTTTTGACATTTTGGTCTA+TGG + chr2.1:4974759-4974778 MS.gene057000:intron 25.0%
!!! CATATAACTTGTTACTATAG+TGG - chr2.1:4972279-4972298 None:intergenic 25.0%
!!! CGTTACTTGTTATTTTGTTT+AGG + chr2.1:4973721-4973740 MS.gene057000:intron 25.0%
!!! GTATTTTTCAACAGAGAAAA+TGG + chr2.1:4972499-4972518 MS.gene057000:intron 25.0%
!!! TTTTGTTTGAACTTTTGTAG+AGG + chr2.1:4970918-4970937 MS.gene057000:intron 25.0%
AAATTCACCTATCACATCAT+CGG + chr2.1:4974952-4974971 MS.gene057000:CDS 30.0%
AACAAAACTTGCATGTTTGT+TGG + chr2.1:4970483-4970502 MS.gene057000:intron 30.0%
AACCATTAGAAGAGATTTAG+AGG + chr2.1:4972580-4972599 MS.gene057000:intron 30.0%
AATCGAAGACATAATCAAAC+TGG - chr2.1:4973619-4973638 None:intergenic 30.0%
AATCGATTAACTACCAAATG+TGG + chr2.1:4972216-4972235 MS.gene057000:intron 30.0%
ACACCTAAAATAATAGACCA+GGG - chr2.1:4973867-4973886 None:intergenic 30.0%
ACATTCATGTAAAAGTGAGT+TGG + chr2.1:4970627-4970646 MS.gene057000:intron 30.0%
AGAGGAATTGATGTATCTAA+AGG + chr2.1:4970936-4970955 MS.gene057000:intron 30.0%
AGAGTACAATGTTCTTGTAA+TGG + chr2.1:4971406-4971425 MS.gene057000:CDS 30.0%
AGATTGCTGATACTTCAAAA+TGG - chr2.1:4973645-4973664 None:intergenic 30.0%
AGTTTGATTATGTCTTCGAT+TGG + chr2.1:4973618-4973637 MS.gene057000:CDS 30.0%
ATCAACGCTGTATTTCAAAA+TGG + chr2.1:4974339-4974358 MS.gene057000:intron 30.0%
ATCCTCTAAATCTCTTCTAA+TGG - chr2.1:4972585-4972604 None:intergenic 30.0%
ATGAATACACATCTTGGAAT+TGG + chr2.1:4972917-4972936 MS.gene057000:CDS 30.0%
CAGAAGAAAAGAAGCAAAAA+AGG - chr2.1:4974385-4974404 None:intergenic 30.0%
CAGATTATGCATATCTGAAA+AGG + chr2.1:4973433-4973452 MS.gene057000:CDS 30.0%
CGACAAATTAAATTAGACAC+AGG - chr2.1:4970994-4971013 None:intergenic 30.0%
GAAAGTTTCTACTTCTATTG+AGG + chr2.1:4973247-4973266 MS.gene057000:CDS 30.0%
GATAAAACAACATAATGGCA+AGG - chr2.1:4973111-4973130 None:intergenic 30.0%
GCTTCAAGTAGAATCAATTA+TGG + chr2.1:4970703-4970722 MS.gene057000:intron 30.0%
GTCCCTATGTAAAAATGATT+TGG - chr2.1:4971630-4971649 None:intergenic 30.0%
TAACTCTTTCTCATTGCTAT+TGG + chr2.1:4971161-4971180 MS.gene057000:intron 30.0%
TAATATGTGATAGGACTTTG+CGG + chr2.1:4972618-4972637 MS.gene057000:intron 30.0%
TAATGGGGAAATTTCTGTTT+AGG + chr2.1:4974051-4974070 MS.gene057000:intron 30.0%
TCAAGTAGAATCAATTATGG+AGG + chr2.1:4970706-4970725 MS.gene057000:intron 30.0%
TGGATAGTCTAATAACTACA+GGG + chr2.1:4972534-4972553 MS.gene057000:intron 30.0%
TTAAACCTTCACGAATGAAA+AGG - chr2.1:4973470-4973489 None:intergenic 30.0%
TTAATTCAGGTGATGACATT+AGG + chr2.1:4972074-4972093 MS.gene057000:intron 30.0%
TTCTTAGCTTAACAATGTGT+TGG + chr2.1:4973900-4973919 MS.gene057000:intron 30.0%
! ACTTAGTGTGTTAGTACTTT+TGG + chr2.1:4974621-4974640 MS.gene057000:intron 30.0%
! AGTTCTTATTCTCTCTGAAA+AGG - chr2.1:4972871-4972890 None:intergenic 30.0%
! CTTAGTGTGTTAGTACTTTT+GGG + chr2.1:4974622-4974641 MS.gene057000:intron 30.0%
! CTTTTCAGATATGCATAATC+TGG - chr2.1:4973435-4973454 None:intergenic 30.0%
! GAATCTCTTGTTTACATTGT+TGG + chr2.1:4972135-4972154 MS.gene057000:intron 30.0%
! TAAGGTCTTTGATAACTAGA+TGG + chr2.1:4973531-4973550 MS.gene057000:intron 30.0%
! TGAAATAAAGGTGTGCTTTA+TGG + chr2.1:4970876-4970895 MS.gene057000:intron 30.0%
! TTGTATAAAGTACTTCAAGG+CGG + chr2.1:4971235-4971254 MS.gene057000:CDS 30.0%
! TTTTCGACCTAATATGTGAT+AGG + chr2.1:4972609-4972628 MS.gene057000:intron 30.0%
!! GTTCTTGTAATGGATTTACT+GGG + chr2.1:4971416-4971435 MS.gene057000:CDS 30.0%
!! TATATTTACTTTTACGACCC+TGG + chr2.1:4973847-4973866 MS.gene057000:intron 30.0%
!! TGAATGTTTGGTTCCATTTT+AGG - chr2.1:4970807-4970826 None:intergenic 30.0%
!! TGTATGTGTATGTTTGGTTT+TGG + chr2.1:4970548-4970567 MS.gene057000:intron 30.0%
!! TGTCTAGTTCTAATTTCTTC+CGG + chr2.1:4974792-4974811 MS.gene057000:CDS 30.0%
!! TGTTCTTGTAATGGATTTAC+TGG + chr2.1:4971415-4971434 MS.gene057000:CDS 30.0%
!! TTAATTTGTCGCTTGTGTAT+TGG + chr2.1:4971003-4971022 MS.gene057000:intron 30.0%
!!! ATTAGGTGGTGTTTTTTGTT+TGG + chr2.1:4972091-4972110 MS.gene057000:intron 30.0%
!!! CAAACATGCAAGTTTTGTTT+TGG - chr2.1:4970482-4970501 None:intergenic 30.0%
!!! GTATGTGTATGTTTGGTTTT+GGG + chr2.1:4970549-4970568 MS.gene057000:intron 30.0%
!!! TACACCTCTAGAATTGATTT+TGG + chr2.1:4970776-4970795 MS.gene057000:intron 30.0%
!!! TATGTGTATGTTTGGTTTTG+GGG + chr2.1:4970550-4970569 MS.gene057000:intron 30.0%
!!! TCGGATTAAATTTTTTCGGT+TGG + chr2.1:4971329-4971348 MS.gene057000:intron 30.0%
AACGCCAACAATAGATACAA+AGG - chr2.1:4972976-4972995 None:intergenic 35.0%
AATGGCAGAAAATACCTGTA+AGG - chr2.1:4971861-4971880 None:intergenic 35.0%
ACAGAAAGTAATGAGAAAGG+TGG - chr2.1:4974311-4974330 None:intergenic 35.0%
ACTTGCTTCAACATTCAACT+AGG - chr2.1:4971917-4971936 None:intergenic 35.0%
AGAGAGAATAAGAACTTGAC+AGG + chr2.1:4972875-4972894 MS.gene057000:intron 35.0%
AGAGATAACTTGGTCATAAG+TGG - chr2.1:4974241-4974260 None:intergenic 35.0%
ATAGTCTAATAACTACAGGG+AGG + chr2.1:4972537-4972556 MS.gene057000:intron 35.0%
ATGTAGCAAATCTGAAGAAG+CGG - chr2.1:4974545-4974564 None:intergenic 35.0%
CACACCTAAAATAATAGACC+AGG - chr2.1:4973868-4973887 None:intergenic 35.0%
CCAGTAATCAACTTAGTTGT+GGG + chr2.1:4972817-4972836 MS.gene057000:intron 35.0%
CGGTCTTGCTAAAAAATACA+GGG + chr2.1:4971812-4971831 MS.gene057000:CDS 35.0%
CTTGCCTTTGTATCTATTGT+TGG + chr2.1:4972969-4972988 MS.gene057000:intron 35.0%
GAAGCCAAAATCAATTCTAG+AGG - chr2.1:4970783-4970802 None:intergenic 35.0%
GCAAAGTCCTATCACATATT+AGG - chr2.1:4972619-4972638 None:intergenic 35.0%
GCATGACTTAACTATTCACT+GGG + chr2.1:4972025-4972044 MS.gene057000:intron 35.0%
GCTAGTATGAATACACATCT+TGG + chr2.1:4972911-4972930 MS.gene057000:CDS 35.0%
GCTTTCTACAAGAGATAACT+TGG - chr2.1:4974251-4974270 None:intergenic 35.0%
GTGGATAGTCTAATAACTAC+AGG + chr2.1:4972533-4972552 MS.gene057000:intron 35.0%
GTTCTTATGTACTTTCTGAG+AGG + chr2.1:4973074-4973093 MS.gene057000:CDS 35.0%
TACTTAAGTGGCATATTGCA+GGG + chr2.1:4973755-4973774 MS.gene057000:intron 35.0%
TATTCCTTTCTGTCATCTCT+TGG + chr2.1:4971735-4971754 MS.gene057000:intron 35.0%
TCCTTTATCCTAATAAAGCG+TGG + chr2.1:4973318-4973337 MS.gene057000:intron 35.0%
TCGAAAAAGGCTTAGATGTT+GGG + chr2.1:4972674-4972693 MS.gene057000:intron 35.0%
TCGGTCTTGCTAAAAAATAC+AGG + chr2.1:4971811-4971830 MS.gene057000:CDS 35.0%
TCTGGACCTATTGTAAATGA+TGG + chr2.1:4974132-4974151 MS.gene057000:CDS 35.0%
TGCATGACTTAACTATTCAC+TGG + chr2.1:4972024-4972043 MS.gene057000:intron 35.0%
TTACTTAAGTGGCATATTGC+AGG + chr2.1:4973754-4973773 MS.gene057000:intron 35.0%
! AACAACGACGTTGATTGTTT+AGG + chr2.1:4971113-4971132 MS.gene057000:intron 35.0%
! ATCCTTTTTGTCCCAATTGT+GGG + chr2.1:4972338-4972357 MS.gene057000:intron 35.0%
! GTCTTTGATAACTAGATGGT+CGG + chr2.1:4973535-4973554 MS.gene057000:intron 35.0%
! TCTTTGATAACTAGATGGTC+GGG + chr2.1:4973536-4973555 MS.gene057000:intron 35.0%
! TTATGTACTTTCTGAGAGGA+AGG + chr2.1:4973078-4973097 MS.gene057000:CDS 35.0%
! TTCTCATTGCTATTGGATTC+AGG + chr2.1:4971168-4971187 MS.gene057000:intron 35.0%
! TTGTATTCTTTTGTTGCTGC+AGG + chr2.1:4973590-4973609 MS.gene057000:intron 35.0%
! TTTGATTCGTACAACAACTG+AGG - chr2.1:4971214-4971233 None:intergenic 35.0%
!! AATTTTGAGTCAACTATCCG+AGG + chr2.1:4975022-4975041 MS.gene057000:CDS 35.0%
!! ATGTATCTAAAGGTGCTGAT+AGG + chr2.1:4970946-4970965 MS.gene057000:intron 35.0%
!! ATTGGTTCGACAACTCAAAA+GGG + chr2.1:4971021-4971040 MS.gene057000:intron 35.0%
!! CACAACTAAGTTGATTACTG+GGG - chr2.1:4972818-4972837 None:intergenic 35.0%
!! CAGCATGAGTACAGTTTTAA+GGG - chr2.1:4971486-4971505 None:intergenic 35.0%
!! CCACAACTAAGTTGATTACT+GGG - chr2.1:4972819-4972838 None:intergenic 35.0%
!! TATTGGTTCGACAACTCAAA+AGG + chr2.1:4971020-4971039 MS.gene057000:intron 35.0%
!!! GATTTTGGCTTCTCCTAAAA+TGG + chr2.1:4970791-4970810 MS.gene057000:intron 35.0%
!!! GGTCTATTATTTTAGGTGTG+TGG + chr2.1:4973868-4973887 MS.gene057000:intron 35.0%
!!! TTCGGTTGGCTACTTTTATA+TGG + chr2.1:4971343-4971362 MS.gene057000:intron 35.0%
AAACCAGACAACTTCCTCAT+GGG + chr2.1:4971653-4971672 MS.gene057000:CDS 40.0%
AAGTACGAAGCGAATTCTGA+GGG - chr2.1:4973378-4973397 None:intergenic 40.0%
AATTCAGGCTCTCAATACCT+CGG - chr2.1:4975042-4975061 None:intergenic 40.0%
ACCTGTAAGGTATATGCTGA+TGG - chr2.1:4971848-4971867 None:intergenic 40.0%
AGAAACTAGCACCCACAATT+GGG - chr2.1:4972352-4972371 None:intergenic 40.0%
AGATACAAAGGCAAGTGAGT+TGG - chr2.1:4972964-4972983 None:intergenic 40.0%
ATGGCATACACCTACAAAAG+AGG - chr2.1:4971786-4971805 None:intergenic 40.0%
ATTAACCTCGGCAAACACAT+AGG - chr2.1:4974658-4974677 None:intergenic 40.0%
ATTCAGGTGATGACATTAGG+TGG + chr2.1:4972077-4972096 MS.gene057000:intron 40.0%
ATTGTGCACATAGACACACA+TGG - chr2.1:4974440-4974459 None:intergenic 40.0%
ATTTATCAGAGCAAAGCCGT+AGG + chr2.1:4973027-4973046 MS.gene057000:intron 40.0%
CAATCCAAGAGATGACAGAA+AGG - chr2.1:4971742-4971761 None:intergenic 40.0%
CACAAAGCAACAACATCTTC+TGG + chr2.1:4974977-4974996 MS.gene057000:CDS 40.0%
CCCAGTAATCAACTTAGTTG+TGG + chr2.1:4972816-4972835 MS.gene057000:intron 40.0%
CCTGAATTTCAATGACGAGA+AGG + chr2.1:4975054-4975073 MS.gene057000:CDS 40.0%
CCTGTAAGGTATATGCTGAT+GGG - chr2.1:4971847-4971866 None:intergenic 40.0%
CCTTAAAACTGTACTCATGC+TGG + chr2.1:4971484-4971503 MS.gene057000:CDS 40.0%
CCTTCTCGTCATTGAAATTC+AGG - chr2.1:4975057-4975076 None:intergenic 40.0%
CTCTGTTACACATCCACATT+TGG - chr2.1:4972232-4972251 None:intergenic 40.0%
CTGAATAAATCCTCGAGACT+TGG - chr2.1:4971443-4971462 None:intergenic 40.0%
CTTCGTACTTCCATTACTGT+CGG + chr2.1:4973388-4973407 MS.gene057000:CDS 40.0%
GATGTGTAACAGAGAATTGC+TGG + chr2.1:4972238-4972257 MS.gene057000:intron 40.0%
GGAAAGAGACGAAGCAATAA+AGG - chr2.1:4971530-4971549 None:intergenic 40.0%
GGCGTTTGATTCTGAACTTT+GGG + chr2.1:4972990-4973009 MS.gene057000:intron 40.0%
GGGAAATTTCTGTTTAGGTG+GGG + chr2.1:4974056-4974075 MS.gene057000:intron 40.0%
GGGGAAATTTCTGTTTAGGT+GGG + chr2.1:4974055-4974074 MS.gene057000:intron 40.0%
GGGTAGAAATTCGGTAAGAT+AGG - chr2.1:4971270-4971289 None:intergenic 40.0%
GTCGAAAAAGGCTTAGATGT+TGG + chr2.1:4972673-4972692 MS.gene057000:intron 40.0%
TAGAAACTAGCACCCACAAT+TGG - chr2.1:4972353-4972372 None:intergenic 40.0%
TGAATTTCTTTGAGCACCAG+AGG - chr2.1:4974939-4974958 None:intergenic 40.0%
TGGCGTTTGATTCTGAACTT+TGG + chr2.1:4972989-4973008 MS.gene057000:intron 40.0%
TGGGGAAATTTCTGTTTAGG+TGG + chr2.1:4974054-4974073 MS.gene057000:intron 40.0%
TTTAGCAAGACCGAAGTCAA+TGG - chr2.1:4971805-4971824 None:intergenic 40.0%
TTTATCAGAGCAAAGCCGTA+GGG + chr2.1:4973028-4973047 MS.gene057000:intron 40.0%
TTTCAACAGAGAAAATGGCG+AGG + chr2.1:4972504-4972523 MS.gene057000:intron 40.0%
! AAAGCAAGCCACGCTTTATT+AGG - chr2.1:4973329-4973348 None:intergenic 40.0%
! ATTGGTAACAAGTTCCGTCT+TGG + chr2.1:4970216-4970235 MS.gene057000:CDS 40.0%
! CCAGCATGAGTACAGTTTTA+AGG - chr2.1:4971487-4971506 None:intergenic 40.0%
! CGACCCTGGTCTATTATTTT+AGG + chr2.1:4973861-4973880 MS.gene057000:intron 40.0%
! CTTGTCTAGACAAAAAGCAC+CGG + chr2.1:4974158-4974177 MS.gene057000:CDS 40.0%
! GATCCTTTTTGTCCCAATTG+TGG + chr2.1:4972337-4972356 MS.gene057000:intron 40.0%
! GCCACGCTTTATTAGGATAA+AGG - chr2.1:4973322-4973341 None:intergenic 40.0%
! TTGCGGTGTCAATTGATTCA+TGG + chr2.1:4972635-4972654 MS.gene057000:intron 40.0%
! TTGGTTCGACAACTCAAAAG+GGG + chr2.1:4971022-4971041 MS.gene057000:intron 40.0%
! TTTGAGCACCAGAGGTTTTA+AGG - chr2.1:4974931-4974950 None:intergenic 40.0%
! TTTTGTTAGTCCTTGTGTCG+TGG + chr2.1:4973348-4973367 MS.gene057000:intron 40.0%
!! CCCACAACTAAGTTGATTAC+TGG - chr2.1:4972820-4972839 None:intergenic 40.0%
!! TAGGTGTATGCCATTGACTT+CGG + chr2.1:4971792-4971811 MS.gene057000:intron 40.0%
AAAATTGGCAGCGGATCCTT+CGG + chr2.1:4970243-4970262 MS.gene057000:CDS 45.0%
AACAACTGCATCACGACTGT+TGG - chr2.1:4974852-4974871 None:intergenic 45.0%
AAGATGGTAGACATGCTGGT+TGG + chr2.1:4974079-4974098 MS.gene057000:CDS 45.0%
ACGCCAAACCATCTCACATT+CGG - chr2.1:4971380-4971399 None:intergenic 45.0%
ACTCGTCTTGTAGATCCACT+AGG - chr2.1:4974818-4974837 None:intergenic 45.0%
AGAGAAAATGGCGAGGTCTT+AGG + chr2.1:4972511-4972530 MS.gene057000:intron 45.0%
AGGGACGACTTAGAATCACT+TGG + chr2.1:4973047-4973066 MS.gene057000:CDS 45.0%
AGTACGAAGCGAATTCTGAG+GGG - chr2.1:4973377-4973396 None:intergenic 45.0%
AGTGGATCTACAAGACGAGT+AGG + chr2.1:4974818-4974837 MS.gene057000:CDS 45.0%
ATCCCGAATGTGAGATGGTT+TGG + chr2.1:4971374-4971393 MS.gene057000:CDS 45.0%
CAAACCAGACAACTTCCTCA+TGG + chr2.1:4971652-4971671 MS.gene057000:CDS 45.0%
CAATCTCACCTGGTCGAAAA+AGG + chr2.1:4972661-4972680 MS.gene057000:intron 45.0%
CACCCACAATTGGGACAAAA+AGG - chr2.1:4972343-4972362 None:intergenic 45.0%
CCATTTGAGTCACTTGGTAC+CGG - chr2.1:4974180-4974199 None:intergenic 45.0%
CCCATCAGCATATACCTTAC+AGG + chr2.1:4971844-4971863 MS.gene057000:CDS 45.0%
CTGATAGGTGTGTGTGACTA+AGG + chr2.1:4970961-4970980 MS.gene057000:intron 45.0%
GAAGTACGAAGCGAATTCTG+AGG - chr2.1:4973379-4973398 None:intergenic 45.0%
GGGAGGTGAAAGAAAACTGT+AGG + chr2.1:4972554-4972573 MS.gene057000:intron 45.0%
GGTGTGCTTTATGGAATGTG+TGG + chr2.1:4970885-4970904 MS.gene057000:intron 45.0%
GTACAACAACTGAGGATGCT+TGG - chr2.1:4971206-4971225 None:intergenic 45.0%
GTGATTCTAAGTCGTCCCTA+CGG - chr2.1:4973046-4973065 None:intergenic 45.0%
GTGCTTTATGGAATGTGTGG+TGG + chr2.1:4970888-4970907 MS.gene057000:intron 45.0%
TATGTCCTATGTGTTTGCCG+AGG + chr2.1:4974650-4974669 MS.gene057000:intron 45.0%
TCCATTACTGTCGGTCATTG+CGG + chr2.1:4973397-4973416 MS.gene057000:CDS 45.0%
TCTAATTTCTTCCGGCCTAG+TGG + chr2.1:4974800-4974819 MS.gene057000:CDS 45.0%
TTCCGTCTTGGTCGCAAAAT+TGG + chr2.1:4970228-4970247 MS.gene057000:CDS 45.0%
TTCTGTTTAGGTGGGGAAGA+TGG + chr2.1:4974063-4974082 MS.gene057000:intron 45.0%
TTGTGCTCCGATGATGTGAT+AGG - chr2.1:4974962-4974981 None:intergenic 45.0%
! AGGTATATGCTGATGGGTAG+AGG - chr2.1:4971841-4971860 None:intergenic 45.0%
! CTTTTAATCCCTGCCATGGA+AGG - chr2.1:4973187-4973206 None:intergenic 45.0%
! GGTATTTCTACAGCCTTCCA+TGG + chr2.1:4973171-4973190 MS.gene057000:intron 45.0%
! TGCCAATTTTGCGACCAAGA+CGG - chr2.1:4970233-4970252 None:intergenic 45.0%
!! AGGGTATTGTGACAACAAGC+AGG - chr2.1:4974708-4974727 None:intergenic 45.0%
!! CGGAACTTGTTACCAATACG+AGG - chr2.1:4970213-4970232 None:intergenic 45.0%
!! GACAACTCAAAAGGGGTGTT+TGG + chr2.1:4971029-4971048 MS.gene057000:intron 45.0%
!!! CATCTAAGCCTTTTTCGACC+AGG - chr2.1:4972672-4972691 None:intergenic 45.0%
!!! CTTTTTCGACCAGGTGAGAT+TGG - chr2.1:4972663-4972682 None:intergenic 45.0%
!!! GGCTACTTTTATATGGCAGC+TGG + chr2.1:4971350-4971369 MS.gene057000:intron 45.0%
!! AAATTAATTATTTATTTACT+TGG + chr2.1:4973150-4973169 MS.gene057000:intron 5.0%
!!! TTTTAATGTTTTTTTTTAAT+GGG + chr2.1:4974001-4974020 MS.gene057000:intron 5.0%
!!! TTTTTAATGTTTTTTTTTAA+TGG + chr2.1:4974000-4974019 MS.gene057000:intron 5.0%
!!! TTTTTTTTTGAAAAATTAAT+GGG + chr2.1:4974035-4974054 MS.gene057000:intron 5.0%
!!! TTTTTTTTTTGAAAAATTAA+TGG + chr2.1:4974034-4974053 MS.gene057000:intron 5.0%
ACAACTTCCTCATGGGTCTG+GGG + chr2.1:4971660-4971679 MS.gene057000:CDS 50.0%
ACCGCAATGACCGACAGTAA+TGG - chr2.1:4973401-4973420 None:intergenic 50.0%
AGACAACTTCCTCATGGGTC+TGG + chr2.1:4971658-4971677 MS.gene057000:CDS 50.0%
AGACCCATGAGGAAGTTGTC+TGG - chr2.1:4971659-4971678 None:intergenic 50.0%
AGTGGCATATTGCAGGGTTC+TGG + chr2.1:4973761-4973780 MS.gene057000:intron 50.0%
CCAGAGTTTCTTCTACGAGC+AGG - chr2.1:4974117-4974136 None:intergenic 50.0%
CCATGGCAGGGATTAAAAGC+AGG + chr2.1:4973188-4973207 MS.gene057000:CDS 50.0%
CCGGTACCAAGTGACTCAAA+TGG + chr2.1:4974177-4974196 MS.gene057000:CDS 50.0%
CCTGCTCGTAGAAGAAACTC+TGG + chr2.1:4974114-4974133 MS.gene057000:CDS 50.0%
CGCCAAACCATCTCACATTC+GGG - chr2.1:4971379-4971398 None:intergenic 50.0%
CTGGTATCCCGAATGTGAGA+TGG + chr2.1:4971369-4971388 MS.gene057000:CDS 50.0%
CTTACAATGGCACGTGCAGA+AGG - chr2.1:4973680-4973699 None:intergenic 50.0%
CTTGGTCGCAAAATTGGCAG+CGG + chr2.1:4970234-4970253 MS.gene057000:CDS 50.0%
GAAAATGGCGAGGTCTTAGG+TGG + chr2.1:4972514-4972533 MS.gene057000:intron 50.0%
GACAACTTCCTCATGGGTCT+GGG + chr2.1:4971659-4971678 MS.gene057000:CDS 50.0%
GTCTTGTAGATCCACTAGGC+CGG - chr2.1:4974814-4974833 None:intergenic 50.0%
TAGCACACCGCCACTTACAA+TGG - chr2.1:4973693-4973712 None:intergenic 50.0%
TCCTTCGGCGAGATCTATCT+CGG + chr2.1:4970258-4970277 MS.gene057000:CDS 50.0%
TTCATGGAGCCAATCTCACC+TGG + chr2.1:4972651-4972670 MS.gene057000:intron 50.0%
TTCTACAGCCTTCCATGGCA+GGG + chr2.1:4973176-4973195 MS.gene057000:intron 50.0%
TTTACTGGGACCAAGTCTCG+AGG + chr2.1:4971430-4971449 MS.gene057000:CDS 50.0%
TTTCTACAGCCTTCCATGGC+AGG + chr2.1:4973175-4973194 MS.gene057000:intron 50.0%
! ACTCATGCTGGCTGATCAGA+TGG + chr2.1:4971496-4971515 MS.gene057000:CDS 50.0%
! ATATTGCAGGGTTCTGGTGC+TGG + chr2.1:4973767-4973786 MS.gene057000:intron 50.0%
! ATGCTGGCTGATCAGATGGT+AGG + chr2.1:4971500-4971519 MS.gene057000:intron 50.0%
! CGCGACCTTTTCATTCGTGA+AGG + chr2.1:4973462-4973481 MS.gene057000:CDS 50.0%
! GGAGCACTCCTTAAAACCTC+TGG + chr2.1:4974920-4974939 MS.gene057000:CDS 50.0%
! GTGAGATGGTTTGGCGTAGA+AGG + chr2.1:4971383-4971402 MS.gene057000:CDS 50.0%
! TATTGCAGGGTTCTGGTGCT+GGG + chr2.1:4973768-4973787 MS.gene057000:intron 50.0%
! TCTGCACGTGCCATTGTAAG+TGG + chr2.1:4973680-4973699 MS.gene057000:intron 50.0%
!! CCTGCTTTTAATCCCTGCCA+TGG - chr2.1:4973191-4973210 None:intergenic 50.0%
!!! GAGGTTTTAAGGAGTGCTCC+AGG - chr2.1:4974920-4974939 None:intergenic 50.0%
AACCCTCTCTTCCTCTTGCC+AGG + chr2.1:4974885-4974904 MS.gene057000:CDS 55.0%
AATGGCACGTGCAGAAGGAG+TGG - chr2.1:4973675-4973694 None:intergenic 55.0%
ACCCTCTCTTCCTCTTGCCA+GGG + chr2.1:4974886-4974905 MS.gene057000:CDS 55.0%
ACCGAGATAGATCTCGCCGA+AGG - chr2.1:4970262-4970281 None:intergenic 55.0%
ATCCCTGGCAAGAGGAAGAG+AGG - chr2.1:4974891-4974910 None:intergenic 55.0%
CTCTCAGCACTCACAACAGC+TGG - chr2.1:4973812-4973831 None:intergenic 55.0%
GCTGGTGGTAAGCCAGAACT+TGG - chr2.1:4973794-4973813 None:intergenic 55.0%
GGGGAAGATGGTAGACATGC+TGG + chr2.1:4974075-4974094 MS.gene057000:CDS 55.0%
GTAAGTGGCGGTGTGCTATC+TGG + chr2.1:4973695-4973714 MS.gene057000:intron 55.0%
TCAGCACTCACAACAGCTGG+TGG - chr2.1:4973809-4973828 None:intergenic 55.0%
TCCCTGGCAAGAGGAAGAGA+GGG - chr2.1:4974890-4974909 None:intergenic 55.0%
TCTCTTCCTCTTGCCAGGGA+TGG + chr2.1:4974890-4974909 MS.gene057000:CDS 55.0%
! GCACGTGCCATTGTAAGTGG+CGG + chr2.1:4973683-4973702 MS.gene057000:intron 55.0%
!! GTGAGTGCTGAGAGACCATC+AGG + chr2.1:4973818-4973837 MS.gene057000:CDS 55.0%
ACTTCCTCATGGGTCTGGGG+AGG + chr2.1:4971663-4971682 MS.gene057000:CDS 60.0%
CTTGCCAGGGATGGTAGTCC+TGG + chr2.1:4974899-4974918 MS.gene057000:CDS 60.0%
GGACTACCATCCCTGGCAAG+AGG - chr2.1:4974899-4974918 None:intergenic 60.0%
TGAGGGGTAGCCACGACACA+AGG - chr2.1:4973361-4973380 None:intergenic 60.0%
TGCTCCAGGACTACCATCCC+TGG - chr2.1:4974906-4974925 None:intergenic 60.0%
! TCTGGTGCTGGGCCAAGTTC+TGG + chr2.1:4973779-4973798 MS.gene057000:CDS 60.0%
CTCGCCTCCCCAGACCCATG+AGG - chr2.1:4971670-4971689 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 4970204 4975087 4970204 ID=MS.gene057000
chr2.1 mRNA 4970204 4975087 4970204 ID=MS.gene057000.t1;Parent=MS.gene057000
chr2.1 exon 4970204 4970279 4970204 ID=MS.gene057000.t1.exon1;Parent=MS.gene057000.t1
chr2.1 CDS 4970204 4970279 4970204 ID=cds.MS.gene057000.t1;Parent=MS.gene057000.t1
chr2.1 exon 4970379 4970419 4970379 ID=MS.gene057000.t1.exon2;Parent=MS.gene057000.t1
chr2.1 CDS 4970379 4970419 4970379 ID=cds.MS.gene057000.t1;Parent=MS.gene057000.t1
chr2.1 exon 4971190 4971259 4971190 ID=MS.gene057000.t1.exon3;Parent=MS.gene057000.t1
chr2.1 CDS 4971190 4971259 4971190 ID=cds.MS.gene057000.t1;Parent=MS.gene057000.t1
chr2.1 exon 4971369 4971517 4971369 ID=MS.gene057000.t1.exon4;Parent=MS.gene057000.t1
chr2.1 CDS 4971369 4971517 4971369 ID=cds.MS.gene057000.t1;Parent=MS.gene057000.t1
chr2.1 exon 4971602 4971697 4971602 ID=MS.gene057000.t1.exon5;Parent=MS.gene057000.t1
chr2.1 CDS 4971602 4971697 4971602 ID=cds.MS.gene057000.t1;Parent=MS.gene057000.t1
chr2.1 exon 4971795 4971865 4971795 ID=MS.gene057000.t1.exon6;Parent=MS.gene057000.t1
chr2.1 CDS 4971795 4971865 4971795 ID=cds.MS.gene057000.t1;Parent=MS.gene057000.t1
chr2.1 exon 4972877 4972938 4972877 ID=MS.gene057000.t1.exon7;Parent=MS.gene057000.t1
chr2.1 CDS 4972877 4972938 4972877 ID=cds.MS.gene057000.t1;Parent=MS.gene057000.t1
chr2.1 exon 4973036 4973099 4973036 ID=MS.gene057000.t1.exon8;Parent=MS.gene057000.t1
chr2.1 CDS 4973036 4973099 4973036 ID=cds.MS.gene057000.t1;Parent=MS.gene057000.t1
chr2.1 exon 4973184 4973268 4973184 ID=MS.gene057000.t1.exon9;Parent=MS.gene057000.t1
chr2.1 CDS 4973184 4973268 4973184 ID=cds.MS.gene057000.t1;Parent=MS.gene057000.t1
chr2.1 exon 4973357 4973483 4973357 ID=MS.gene057000.t1.exon10;Parent=MS.gene057000.t1
chr2.1 CDS 4973357 4973483 4973357 ID=cds.MS.gene057000.t1;Parent=MS.gene057000.t1
chr2.1 exon 4973612 4973694 4973612 ID=MS.gene057000.t1.exon11;Parent=MS.gene057000.t1
chr2.1 CDS 4973612 4973694 4973612 ID=cds.MS.gene057000.t1;Parent=MS.gene057000.t1
chr2.1 exon 4973776 4973839 4973776 ID=MS.gene057000.t1.exon12;Parent=MS.gene057000.t1
chr2.1 CDS 4973776 4973839 4973776 ID=cds.MS.gene057000.t1;Parent=MS.gene057000.t1
chr2.1 exon 4974073 4974215 4974073 ID=MS.gene057000.t1.exon13;Parent=MS.gene057000.t1
chr2.1 CDS 4974073 4974215 4974073 ID=cds.MS.gene057000.t1;Parent=MS.gene057000.t1
chr2.1 exon 4974791 4975087 4974791 ID=MS.gene057000.t1.exon14;Parent=MS.gene057000.t1
chr2.1 CDS 4974791 4975087 4974791 ID=cds.MS.gene057000.t1;Parent=MS.gene057000.t1
Gene Sequence

>MS.gene057000

ATGGAACCTCGTATTGGTAACAAGTTCCGTCTTGGTCGCAAAATTGGCAGCGGATCCTTCGGCGAGATCTATCTCGGTATCATCATTTTCCTTCAATTTTTCAATCCATCATTATTATTATTTTCAATTATTATTATTATCACTAACTTTAAATTTAATTAATTTGAAAATTCAGGTACAAATATTCAGACAAATGAAGAGGTTGCAATTAAGCTTGTGAGTATTTTTCTGTCATAATTAATTTTGAAACTTTCGATTTTCTTTTATGTTTAATTCCAAAACAAAACTTGCATGTTTGTTGGTCAAAGTTATTGATTCTAGCTCGTAAAGTTGTGATTTTTATGTGTATGTGTATGTTTGGTTTTGGGGTGACAATAATTGATTTCGAGTAAATTGATTATGTAAAGTGATTTGTGTTTGGATACATTCATGTAAAAGTGAGTTGGACAGTAAATTTGAGTGTGAAAATCAATTATTGAATCAAAAGCTACAAATCTTAGCTTCAAGTAGAATCAATTATGGAGGAAAATTCAGTTCTATTTGAAAGCAACAAAACATGTCAAAATCAATTCTACACCTCTAGAATTGATTTTGGCTTCTCCTAAAATGGAACCAAACATTCATGTAGTTTTGTTTATTGTTCAATTTTAATGAGTTATGAGTGTGCAAAATTGAAATAAAGGTGTGCTTTATGGAATGTGTGGTGGAATGTTTTTTTGTTTGAACTTTTGTAGAGGAATTGATGTATCTAAAGGTGCTGATAGGTGTGTGTGACTAAGGTTGTTTGCCTGTGTCTAATTTAATTTGTCGCTTGTGTATTGGTTCGACAACTCAAAAGGGGTGTTTGGCTGTATACTCATTGTCGTTTATCTGCTGTTTTTAATGACATTAATGATAATTAACTTATTGAACAACGACGTTGATTGTTTAGGATTATAGATGTGTTTAATTGATGTTTAACTCTTTCTCATTGCTATTGGATTCAGGAAAATATCAAAACCAAGCATCCTCAGTTGTTGTACGAATCAAAGTTGTATAAAGTACTTCAAGGCGGAAGTAATTTCCTATCTTACCGAATTTCTACCCTTACAATATCTTAGTTTACTTCATTAGACTTCATATTACTCGGATTAAATTTTTTCGGTTGGCTACTTTTATATGGCAGCTGGTATCCCGAATGTGAGATGGTTTGGCGTAGAAGGAGAGTACAATGTTCTTGTAATGGATTTACTGGGACCAAGTCTCGAGGATTTATTCAGTTTTTGTAGTCGGAAATTGTCCCTTAAAACTGTACTCATGCTGGCTGATCAGATGGTAGGATTTCCTTTATTGCTTCGTCTCTTTCCTATTTTTTATTTACCTAAATCTTAATATGGGGAAATCTCTAACTGTTTGCAGATAAATCGAGTTGAATATATTCATTCCAAATCATTTTTACATAGGGACATCAAACCAGACAACTTCCTCATGGGTCTGGGGAGGCGAGCTAATCAAGTATTAGTTAAATTCTCGCTTTTTCATTTAATTTTCTTATTCCTTTCTGTCATCTCTTGGATTGAATATATCCTTTTCAAATTTACCTCTTTTGTAGGTGTATGCCATTGACTTCGGTCTTGCTAAAAAATACAGGGACACCTCTACCCATCAGCATATACCTTACAGGTATTTTCTGCCATTTTTATTTAGTTTTTGTGAATTTATGTGTAATGGCCTAGTTGAATGTTGAAGCAAGTTTTAACTATATGAAATTAGAGGAAATTAGGACAACTATAATTTGATAATGACAAATGCATTATCTGAAACTTGAAAGTATTGTTTGTTGCATGACTTAACTATTCACTGGGAGTCGTTTATAATAAAAGTATTAGCTTTAATTCAGGTGATGACATTAGGTGGTGTTTTTTGTTTGGTTTTGTGTTTCATGCAGAGATGAATCTCTTGTTTACATTGTTGGAAGATTAAAAAATAATCTATTTCTCTCTAGAGCTTTGATGTTTAGAATACTATTGATAAATCGATTAACTACCAAATGTGGATGTGTAACAGAGAATTGCTGGAAGAATTTAATTTACCCACTATAGTAACAAGTTATATGAAAATTGGTAGTTCTGCACAGACAATCAATCAAGTCTAGATCCTTTTTGTCCCAATTGTGGGTGCTAGTTTCTATTTTTGTATTTGTGAAAATTTGTTTCTATACTTCGTGCATAACTAGCTGTTGTTAATTGTACAATAAGTAAAATCTTTTAAGTAACTTCTTTAAAGATTGTTATAATCAATAGAAAGAAAATTAAGGTATTTTTCAACAGAGAAAATGGCGAGGTCTTAGGTGGATAGTCTAATAACTACAGGGAGGTGAAAGAAAACTGTAGGACAAACCATTAGAAGAGATTTAGAGGATATTATTTTCGACCTAATATGTGATAGGACTTTGCGGTGTCAATTGATTCATGGAGCCAATCTCACCTGGTCGAAAAAGGCTTAGATGTTGGGTTGATTGTGTTATTCATCTTTATTTATTTTAGTTTACTTTATTCACTATTTTATCGAAAAACTTTATAATAAGTTTCTATTTATTGATTAAAATAGTACTTGCTTATTGTATTGTAGTCCCCAGTAATCAACTTAGTTGTGGGTTTTCGCTGAATTTTACTTGCTTATAATCCTTTTCAGAGAGAATAAGAACTTGACAGGAACTGCTAGATATGCTAGTATGAATACACATCTTGGAATTGGTACGTTCACACATCTCTTCTTCCAACTCACTTGCCTTTGTATCTATTGTTGGCGTTTGATTCTGAACTTTGGGAATGTTTGATCATTATTTATCAGAGCAAAGCCGTAGGGACGACTTAGAATCACTTGGATATGTTCTTATGTACTTTCTGAGAGGAAGGTATTTATCCTTGCCATTATGTTGTTTTATCTTCCTTATCAACTGCTTTTAAATTAATTATTTATTTACTTGGTATTTCTACAGCCTTCCATGGCAGGGATTAAAAGCAGGTACTAAAAAGCAGAAGTACGAGAAAATCAGTGAGAAGAAAGTTTCTACTTCTATTGAGGTACAACTGTATTTTAAAATATTGTTTTGGTACATACTATGTTTCAAACTCCTTTATCCTAATAAAGCGTGGCTTGCTTTTTTGTTAGTCCTTGTGTCGTGGCTACCCCTCAGAATTCGCTTCGTACTTCCATTACTGTCGGTCATTGCGGTTTGATGATAAACCAGATTATGCATATCTGAAAAGGCTGTTTCGCGACCTTTTCATTCGTGAAGGTTTAAGCCTCTTTGTTTTCTTATTTATATTTTACTTTTGAAATTATTAAGGTCTTTGATAACTAGATGGTCGGGTTTTGAATTTTAATGTTGTCTGTGTTTTGGCTTGTATTCTTTTGTTGCTGCAGGATTCCAGTTTGATTATGTCTTCGATTGGACCATTTTGAAGTATCAGCAATCTCAAATTGCCACTCCTTCTGCACGTGCCATTGTAAGTGGCGGTGTGCTATCTGGTAACGTTACTTGTTATTTTGTTTAGGTTAAATTGTCTTACTTAAGTGGCATATTGCAGGGTTCTGGTGCTGGGCCAAGTTCTGGCTTACCACCAGCTGTTGTGAGTGCTGAGAGACCATCAGGTATAATTATATTTACTTTTACGACCCTGGTCTATTATTTTAGGTGTGTGGCTTCATACTTTCTTAGCTTAACAATGTGTTGGACATTCTTTGTATATTTCTTGTTCTTCTATGTGTTTCATTTATCACAGTTTTTCCATTTCTTACTGTACTATTAGTATTTTTAATGTTTTTTTTTAATGGGGAAATTTCTTTTTTTTTTTTGAAAAATTAATGGGGAAATTTCTGTTTAGGTGGGGAAGATGGTAGACATGCTGGTTGGTCTTCATCAGATCCTGCTCGTAGAAGAAACTCTGGACCTATTGTAAATGATGGAAACTTGTCTAGACAAAAAGCACCGGTACCAAGTGACTCAAATGGATCTAAAGAAGTTATGGTGAGTATATTCATTTATGGGACCACTTATGACCAAGTTATCTCTTGTAGAAAGCTACATGATGATGTTTTTTTTTAACTATATTAAGCATACCACCTTTCTCATTACTTTCTGTTTAAGAAAATCAACGCTGTATTTCAAAATGGAAAAGAAATTATGAAGCTTCCCTTTTTTGCTTCTTTTCTTCTGTTCACAACTAGATTTATAAAGTATTGGCTGTTCCATGTGTGTCTATGTGCACAATTGAAGCATGAGCTAAGCAATTAACGCAAATATTTTTCAGAAGTCAGCTTTGTTTAGAAAAGTTATATATCATTCTTTGGACTCCGCTTCTTCAGATTTGCTACATCTAAGAGTTTTGTTCTGTGAATATACTTAGTAGTTTTTGCTTTTCAGCTGAAAGAAACTTAGTGTGTTAGTACTTTTGGGTTAGTTATGTCCTATGTGTTTGCCGAGGTTAATTCATGATTTTTGTCATGTATGACATAGCCTGCTTGTTGTCACAATACCCTGATTTTTTTTATTGCAGCTAGTTTTCATGTTATTTTTGACATTTTGGTCTATGGTTTATGCAGTTGTCTAGTTCTAATTTCTTCCGGCCTAGTGGATCTACAAGACGAGTAGGTGCTGTTTCCAACAGTCGTGATGCAGTTGTTAGCAGTGAAATTGAACCCTCTCTTCCTCTTGCCAGGGATGGTAGTCCTGGAGCACTCCTTAAAACCTCTGGTGCTCAAAGAAATTCACCTATCACATCATCGGAGCACAAAGCAACAACATCTTCTGGCAGAAACACATCAAACATGAAGAATTTTGAGTCAACTATCCGAGGTATTGAGAGCCTGAATTTCAATGACGAGAAGGTACAGTATTAG
Protein sequence

>MS.gene057000.t1

MEPRIGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENIKTKHPQLLYESKLYKVLQGGTGIPNVRWFGVEGEYNVLVMDLLGPSLEDLFSFCSRKLSLKTVLMLADQMINRVEYIHSKSFLHRDIKPDNFLMGLGRRANQVYAIDFGLAKKYRDTSTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVSTSIESLCRGYPSEFASYFHYCRSLRFDDKPDYAYLKRLFRDLFIREGFQFDYVFDWTILKYQQSQIATPSARAIGSGAGPSSGLPPAVVSAERPSGGEDGRHAGWSSSDPARRRNSGPIVNDGNLSRQKAPVPSDSNGSKEVMLSSSNFFRPSGSTRRVGAVSNSRDAVVSSEIEPSLPLARDGSPGALLKTSGAQRNSPITSSEHKATTSSGRNTSNMKNFESTIRGIESLNFNDEKVQY