Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058034.t1 | XP_003607233.2 | 96.8 | 958 | 29 | 2 | 1 | 958 | 1 | 956 | 0.00E+00 | 1667.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058034.t1 | Q9Y5Q9 | 22.9 | 817 | 517 | 11 | 172 | 958 | 153 | 886 | 3.0e-59 | 231.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058034.t1 | G7JNI9 | 96.8 | 958 | 29 | 2 | 1 | 958 | 1 | 956 | 0.0e+00 | 1667.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene058034 | MS.gene52134 | 0.820517 | 6.58E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene76728 | MS.gene058034 | PPI |
| MS.gene87743 | MS.gene058034 | PPI |
| MS.gene058034 | MS.gene42075 | PPI |
| MS.gene058034 | MS.gene82237 | PPI |
| MS.gene058034 | MS.gene77045 | PPI |
| MS.gene058034 | MS.gene48819 | PPI |
| MS.gene87064 | MS.gene058034 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058034.t1 | MTR_4g074860 | 96.455 | 959 | 30 | 3 | 1 | 958 | 1 | 956 | 0.0 | 1896 |
| MS.gene058034.t1 | MTR_4g074860 | 94.483 | 870 | 46 | 2 | 1 | 870 | 1 | 868 | 0.0 | 1600 |
| MS.gene058034.t1 | MTR_4g079390 | 81.458 | 960 | 153 | 9 | 1 | 958 | 1 | 937 | 0.0 | 1519 |
| MS.gene058034.t1 | MTR_4g074860 | 95.093 | 754 | 35 | 2 | 1 | 754 | 1 | 752 | 0.0 | 1384 |
| MS.gene058034.t1 | MTR_4g074690 | 84.682 | 346 | 39 | 1 | 1 | 346 | 1 | 332 | 0.0 | 581 |
| MS.gene058034.t1 | MTR_4g074700 | 68.317 | 101 | 11 | 2 | 278 | 357 | 1 | 101 | 5.47e-33 | 123 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058034.t1 | AT1G17680 | 43.448 | 870 | 422 | 13 | 96 | 957 | 88 | 895 | 0.0 | 644 |
| MS.gene058034.t1 | AT1G17680 | 43.448 | 870 | 422 | 13 | 96 | 957 | 88 | 895 | 0.0 | 644 |
| MS.gene058034.t1 | AT1G17680 | 43.448 | 870 | 422 | 13 | 96 | 957 | 88 | 895 | 0.0 | 644 |
Find 196 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTGGTAATCTTTAAATTTC+TGG | 0.073604 | 4.2:+33945821 | None:intergenic |
| AGCTTTAACTTTCAAATTTA+AGG | 0.080716 | 4.2:+33940583 | None:intergenic |
| GTTGAGGAATTTATAAATTT+TGG | 0.115527 | 4.2:-33945011 | MS.gene058034:CDS |
| CCAAAAGTGATCTGCTTAAA+AGG | 0.134984 | 4.2:-33935555 | MS.gene058034:CDS |
| CATCATCTTGTAGTGTTTCT+AGG | 0.181965 | 4.2:+33938091 | None:intergenic |
| CTCGGTATTCCATGGATTTC+TGG | 0.186432 | 4.2:+33945800 | None:intergenic |
| TGAGAAGGTGATTGCTATTA+AGG | 0.193370 | 4.2:-33928983 | MS.gene058034:CDS |
| TTCCAAAGCGTTGGATCTTT+TGG | 0.213096 | 4.2:+33943094 | None:intergenic |
| CGCCTTTATTTCCATCAATA+TGG | 0.230843 | 4.2:+33940661 | None:intergenic |
| ACATCAACCCACCATCTATT+TGG | 0.232616 | 4.2:+33937878 | None:intergenic |
| AGCATTCCTCTACAATAATT+TGG | 0.233608 | 4.2:-33932105 | MS.gene058034:CDS |
| GATGATCTTCCTCCTCCTTC+TGG | 0.255549 | 4.2:+33946058 | None:intergenic |
| CGAGGTCGCAGACTCATTTA+TGG | 0.263136 | 4.2:-33939817 | MS.gene058034:CDS |
| TGCAAATGGCCGTCATAAAA+TGG | 0.270751 | 4.2:-33944362 | MS.gene058034:intron |
| TGTGTACATCATACCTTTCT+TGG | 0.273055 | 4.2:+33944975 | None:intergenic |
| CGAAATACACTATCTGTTTC+CGG | 0.273678 | 4.2:+33935514 | None:intergenic |
| TGCTTTCGAAATACAATAAC+TGG | 0.275722 | 4.2:+33941334 | None:intergenic |
| TTCAAAGATTCACGTATTAA+AGG | 0.282956 | 4.2:+33937782 | None:intergenic |
| TCAAATATTACCTTTCGTTT+AGG | 0.300709 | 4.2:+33937749 | None:intergenic |
| AAGATTAACCAATGGATTCT+TGG | 0.301139 | 4.2:+33932296 | None:intergenic |
| TGATACGAGTCAGGTAAATT+TGG | 0.321774 | 4.2:+33943196 | None:intergenic |
| CTTTCCCCTCCTCAACTAGA+AGG | 0.325341 | 4.2:+33938043 | None:intergenic |
| CCATGTTCATCTTGGAAACT+TGG | 0.329180 | 4.2:-33940552 | MS.gene058034:CDS |
| TCAAAACCTTGTTTAGGATC+TGG | 0.329355 | 4.2:+33932691 | None:intergenic |
| CACAAGGGAGATTCTGTGTT+TGG | 0.332550 | 4.2:+33933194 | None:intergenic |
| ACACAATCAAAACCTTGTTT+AGG | 0.335593 | 4.2:+33932685 | None:intergenic |
| ACATGCTTGCTTGCATTCTC+TGG | 0.339129 | 4.2:+33939852 | None:intergenic |
| GGACTTGTCCATGGTGCAAT+TGG | 0.341743 | 4.2:-33943166 | MS.gene058034:CDS |
| TAGCATCCTTGCAAATGTAT+AGG | 0.352395 | 4.2:-33933042 | MS.gene058034:CDS |
| AAAGATTATTGTTCCGTTTG+AGG | 0.352442 | 4.2:-33928805 | None:intergenic |
| GACTTGTCCATGGTGCAATT+GGG | 0.352525 | 4.2:-33943165 | MS.gene058034:CDS |
| GCTTTAACTTTCAAATTTAA+GGG | 0.357085 | 4.2:+33940584 | None:intergenic |
| CAAAACCTTGTTTAGGATCT+GGG | 0.361830 | 4.2:+33932692 | None:intergenic |
| TCAAAGATTCACGTATTAAA+GGG | 0.371122 | 4.2:+33937783 | None:intergenic |
| GGCCTTGATCAACTTGGCGC+TGG | 0.372728 | 4.2:-33932171 | MS.gene058034:CDS |
| GTTCAACTTGACCACACTTT+TGG | 0.373143 | 4.2:+33940762 | None:intergenic |
| AATGAGAAGCTTCGATCTCT+TGG | 0.381601 | 4.2:-33932956 | MS.gene058034:CDS |
| GCAGACTCATTTATGGGTCT+TGG | 0.384921 | 4.2:-33939810 | MS.gene058034:CDS |
| AGATTAACCAATGGATTCTT+GGG | 0.387948 | 4.2:+33932297 | None:intergenic |
| GACTCCTAAGACTACTATCT+TGG | 0.389070 | 4.2:+33941297 | None:intergenic |
| ATAAATTCCTCAACCTCAGC+TGG | 0.392533 | 4.2:+33945020 | None:intergenic |
| TGCCATATTGATGGAAATAA+AGG | 0.393502 | 4.2:-33940663 | MS.gene058034:CDS |
| AGCATCCTTGCAAATGTATA+GGG | 0.393989 | 4.2:-33933041 | MS.gene058034:CDS |
| TGGGGATCACGAAAATGAAA+TGG | 0.398538 | 4.2:-33943146 | MS.gene058034:CDS |
| TTCGTTCGTAACAATGATTC+CGG | 0.401375 | 4.2:-33945856 | MS.gene058034:CDS |
| TATAAAGATTCCTGCGAGGC+TGG | 0.402386 | 4.2:+33929063 | None:intergenic |
| AAAGCCGAGGCAGTGGCCTC+TGG | 0.403885 | 4.2:-33933360 | MS.gene058034:CDS |
| CGGCGACGGTGTAAATCCTT+TGG | 0.404915 | 4.2:-33945881 | MS.gene058034:CDS |
| TCTACTTGGTGCCATATTGA+TGG | 0.405536 | 4.2:-33940672 | MS.gene058034:CDS |
| ACACTTGCATTTACTCCATC+TGG | 0.405571 | 4.2:+33940701 | None:intergenic |
| TCGCTGTCTTCTACCGCCCT+TGG | 0.407223 | 4.2:+33946036 | None:intergenic |
| TGCAGAGAACAAAATGATAT+TGG | 0.410117 | 4.2:-33941362 | MS.gene058034:intron |
| CTGTCTCCTCCAAAGGAATC+TGG | 0.412972 | 4.2:-33938000 | MS.gene058034:intron |
| TACTAACATCAATGATTAGC+TGG | 0.418868 | 4.2:+33933144 | None:intergenic |
| TGGAGGAGACAGCAAGGAAA+TGG | 0.419772 | 4.2:+33938011 | None:intergenic |
| GCAAAAGTTTATAAGCTTCA+AGG | 0.423524 | 4.2:+33932319 | None:intergenic |
| TCCTTGCCGCGTCTTGATGA+TGG | 0.424711 | 4.2:+33932346 | None:intergenic |
| TGACTCGGATGATGAGCTTC+AGG | 0.426120 | 4.2:-33933316 | MS.gene058034:intron |
| TCATCTTGGAAACTTGGAAA+TGG | 0.426366 | 4.2:-33940546 | MS.gene058034:CDS |
| CGAAAAGATATCACAGATGT+TGG | 0.427095 | 4.2:-33944404 | MS.gene058034:CDS |
| ACTCCTAAGACTACTATCTT+GGG | 0.427608 | 4.2:+33941298 | None:intergenic |
| AGGCAATTGAGAAGGAGAAA+AGG | 0.427635 | 4.2:-33933383 | MS.gene058034:CDS |
| CTCCAAAAGATCCAACGCTT+TGG | 0.429606 | 4.2:-33943096 | MS.gene058034:CDS |
| TATCAATCTCTCTCTGAAAT+CGG | 0.431671 | 4.2:-33933005 | MS.gene058034:CDS |
| TGCTAGATGTTATCAAGCGT+TGG | 0.439832 | 4.2:-33939203 | MS.gene058034:CDS |
| GCCTTGATCAACTTGGCGCT+GGG | 0.442089 | 4.2:-33932170 | MS.gene058034:CDS |
| TAGTTACCGGTGAGATTGTA+GGG | 0.443984 | 4.2:+33945750 | None:intergenic |
| TTACCAGTACCAGATTCCTT+TGG | 0.444295 | 4.2:+33937991 | None:intergenic |
| GTTATCAAGCGTTGGGAGAA+AGG | 0.444433 | 4.2:-33939195 | MS.gene058034:CDS |
| TTAAATTTGAAAGTTAAAGC+TGG | 0.445910 | 4.2:-33940581 | MS.gene058034:CDS |
| AAGGTCGCAGTAACCAGGTT+TGG | 0.447194 | 4.2:+33928903 | None:intergenic |
| TTAGTTACCGGTGAGATTGT+AGG | 0.449175 | 4.2:+33945749 | None:intergenic |
| GGAATCTGCCATGTTCATCT+TGG | 0.450294 | 4.2:-33940560 | MS.gene058034:CDS |
| GCAGAGCAAACTGTTGCTAC+TGG | 0.451593 | 4.2:-33935602 | MS.gene058034:intron |
| GCTAGATGTTATCAAGCGTT+GGG | 0.456876 | 4.2:-33939202 | MS.gene058034:CDS |
| GGTAGAGAAACTTGCTGCTC+CGG | 0.460694 | 4.2:-33935533 | MS.gene058034:CDS |
| TGTTGAAGCACGCATAACTT+TGG | 0.467038 | 4.2:-33938070 | MS.gene058034:CDS |
| GGGGATCACGAAAATGAAAT+GGG | 0.467202 | 4.2:-33943145 | MS.gene058034:CDS |
| CCAGTACCAGATTCCTTTGG+AGG | 0.471523 | 4.2:+33937994 | None:intergenic |
| ATTTGTCATGTCTTGTATCT+CGG | 0.471744 | 4.2:+33932448 | None:intergenic |
| CAAAAGTGATCTGCTTAAAA+GGG | 0.472363 | 4.2:-33935554 | MS.gene058034:CDS |
| GAGGTCGCAGACTCATTTAT+GGG | 0.475412 | 4.2:-33939816 | MS.gene058034:CDS |
| AAGGATCATGTAACCTCAAA+CGG | 0.483626 | 4.2:+33928792 | None:intergenic |
| AAGCATCAGTGTGTTGTACA+AGG | 0.483840 | 4.2:-33932131 | MS.gene058034:CDS |
| CATAAATGAGTCTGCGACCT+CGG | 0.485715 | 4.2:+33939818 | None:intergenic |
| AGACCTCTTCTAAGAAGGCT+AGG | 0.485774 | 4.2:-33945067 | MS.gene058034:CDS |
| GAAGATGATCAATTCATCTT+CGG | 0.486101 | 4.2:-33945901 | MS.gene058034:CDS |
| CCAAGGGTGTGATACGAGTC+AGG | 0.486679 | 4.2:+33943187 | None:intergenic |
| ACCATACCCTGTGTCTTCAT+TGG | 0.487379 | 4.2:+33946008 | None:intergenic |
| GGCTTCCCTTCTAGTTGAGG+AGG | 0.488281 | 4.2:-33938049 | MS.gene058034:CDS |
| GCCTACGTTCACTATGCAAA+TGG | 0.490448 | 4.2:-33944376 | MS.gene058034:CDS |
| TGGAAACTTGGAAATGGCTC+AGG | 0.490959 | 4.2:-33940540 | MS.gene058034:intron |
| AATTGATTGCCCAGCCTCGC+AGG | 0.491180 | 4.2:-33929073 | MS.gene058034:CDS |
| CCTGACTCGTATCACACCCT+TGG | 0.497427 | 4.2:-33943187 | MS.gene058034:CDS |
| GAAAAGGAAAGCCGAGGCAG+TGG | 0.498777 | 4.2:-33933367 | MS.gene058034:CDS |
| TTTGGCTTCCCTTCTAGTTG+AGG | 0.498866 | 4.2:-33938052 | MS.gene058034:CDS |
| TTCCTTGCTGTCTCCTCCAA+AGG | 0.507093 | 4.2:-33938007 | MS.gene058034:CDS |
| CCATTGGTTAATCTTTGTGT+TGG | 0.507574 | 4.2:-33932288 | MS.gene058034:intron |
| GCTTCCCTTCTAGTTGAGGA+GGG | 0.511143 | 4.2:-33938048 | MS.gene058034:CDS |
| CTGCGAAGGTCGCAGTAACC+AGG | 0.512482 | 4.2:+33928898 | None:intergenic |
| TGTAATCTTCACAAAGATGA+AGG | 0.514832 | 4.2:-33933173 | MS.gene058034:CDS |
| TGTAACATATTTCAGATCAG+AGG | 0.517237 | 4.2:-33937836 | MS.gene058034:CDS |
| CACACCCTTGGACTTGTCCA+TGG | 0.519632 | 4.2:-33943175 | MS.gene058034:CDS |
| ATTCTGAAAAGCCAAATAGA+TGG | 0.519704 | 4.2:-33937889 | MS.gene058034:CDS |
| TTCCCTAGCCTTCTTAGAAG+AGG | 0.524077 | 4.2:+33945064 | None:intergenic |
| AGCTTGGAATTGCTACTACA+AGG | 0.529259 | 4.2:-33932626 | MS.gene058034:CDS |
| GAAAAGATATCACAGATGTT+GGG | 0.529261 | 4.2:-33944403 | MS.gene058034:CDS |
| CAGAGCAAACTGTTGCTACT+GGG | 0.529682 | 4.2:-33935601 | MS.gene058034:CDS |
| GGTAAACCCAGCTGAGGTTG+AGG | 0.531045 | 4.2:-33945027 | MS.gene058034:CDS |
| CCAAGTTTCCAAGATGAACA+TGG | 0.532871 | 4.2:+33940552 | None:intergenic |
| ATAAAGATTCCTGCGAGGCT+GGG | 0.533831 | 4.2:+33929064 | None:intergenic |
| TGCACTAAAAGCAGCAGCTA+AGG | 0.541266 | 4.2:-33941183 | MS.gene058034:intron |
| ACCCAGCGCCAAGTTGATCA+AGG | 0.542488 | 4.2:+33932169 | None:intergenic |
| GGAGATCTGTAAGAACAGCC+AGG | 0.543215 | 4.2:-33932084 | MS.gene058034:intron |
| TAAACTGATGCGCAGAAATG+AGG | 0.544020 | 4.2:+33932379 | None:intergenic |
| ATCGAGAGCTCGGTATTCCA+TGG | 0.544191 | 4.2:+33945792 | None:intergenic |
| GAAACAGATAGTGTATTTCG+AGG | 0.546110 | 4.2:-33935511 | MS.gene058034:CDS |
| ACTAACATCAATGATTAGCT+GGG | 0.546575 | 4.2:+33933145 | None:intergenic |
| AGGAACGGCCTTGATCAACT+TGG | 0.548967 | 4.2:-33932177 | MS.gene058034:CDS |
| CAGTGGCCTCTGGAATTGAC+TGG | 0.549957 | 4.2:-33933350 | MS.gene058034:CDS |
| CTTCCCTTCTAGTTGAGGAG+GGG | 0.550556 | 4.2:-33938047 | MS.gene058034:CDS |
| GCCATCATCAAGACGCGGCA+AGG | 0.554004 | 4.2:-33932347 | MS.gene058034:CDS |
| TTTGCATGAAGTTGTCAGGC+TGG | 0.554814 | 4.2:-33943221 | MS.gene058034:CDS |
| GCCAATGAAGACACAGGGTA+TGG | 0.556221 | 4.2:-33946009 | MS.gene058034:CDS |
| ATGCACAGAGTGTTGCAGCT+TGG | 0.557784 | 4.2:-33932642 | MS.gene058034:CDS |
| ATAGAACAATCTCAAGTGGT+TGG | 0.557899 | 4.2:-33940617 | MS.gene058034:CDS |
| TTGCACCATGGACAAGTCCA+AGG | 0.558983 | 4.2:+33943170 | None:intergenic |
| TAAATTCCTCAACCTCAGCT+GGG | 0.559401 | 4.2:+33945021 | None:intergenic |
| CTGAAAAGCCAAATAGATGG+TGG | 0.560031 | 4.2:-33937886 | MS.gene058034:CDS |
| GACCTCTTCTAAGAAGGCTA+GGG | 0.560807 | 4.2:-33945066 | MS.gene058034:CDS |
| CACTCACCGATCAGCTGATG+TGG | 0.561902 | 4.2:+33935474 | None:intergenic |
| ACTTGTCCATGGTGCAATTG+GGG | 0.566458 | 4.2:-33943164 | MS.gene058034:CDS |
| TGAAGAGACCTCTTCTAAGA+AGG | 0.567023 | 4.2:-33945072 | MS.gene058034:CDS |
| GTAACATATTTCAGATCAGA+GGG | 0.567514 | 4.2:-33937835 | MS.gene058034:CDS |
| AATGGAAGAGATTAACCAGA+AGG | 0.576659 | 4.2:-33946073 | MS.gene058034:CDS |
| TTTCCCCTCCTCAACTAGAA+GGG | 0.577242 | 4.2:+33938044 | None:intergenic |
| AGATCTCCAAATTATTGTAG+AGG | 0.578673 | 4.2:+33932099 | None:intergenic |
| TGCTTCCCTATACATTTGCA+AGG | 0.578680 | 4.2:+33933036 | None:intergenic |
| CTCCTAAGACTACTATCTTG+GGG | 0.582097 | 4.2:+33941299 | None:intergenic |
| TTTGGAAGACGCTTTATGTG+TGG | 0.586815 | 4.2:-33943078 | MS.gene058034:CDS |
| GCTTTCGGTTATCGAGAGCT+CGG | 0.586940 | 4.2:+33945782 | None:intergenic |
| AGGAGGAGGAAGATCATCCA+AGG | 0.587252 | 4.2:-33946053 | MS.gene058034:CDS |
| GTCAATGAAAATTCCAAACC+TGG | 0.588858 | 4.2:-33928916 | MS.gene058034:CDS |
| TAAAGCGTCTTCCAAAGCGT+TGG | 0.591231 | 4.2:+33943085 | None:intergenic |
| AGAAGAAGAAGAAAACGATA+CGG | 0.591701 | 4.2:-33945929 | MS.gene058034:CDS |
| TGTAAGCTGCCTCTCTGCGA+AGG | 0.596269 | 4.2:+33928884 | None:intergenic |
| GGCAGCAATATATTATGAGA+AGG | 0.596270 | 4.2:-33928998 | MS.gene058034:CDS |
| AACTACCCCTACAATCTCAC+CGG | 0.596811 | 4.2:-33945756 | MS.gene058034:intron |
| AATTCCAGAGGCCACTGCCT+CGG | 0.597422 | 4.2:+33933356 | None:intergenic |
| AGAGGGCAAGAGACCAAGAA+AGG | 0.599590 | 4.2:-33944988 | MS.gene058034:intron |
| AGATTACCACCAGAAATCCA+TGG | 0.600997 | 4.2:-33945809 | MS.gene058034:CDS |
| CGTGATCCCCAATTGCACCA+TGG | 0.601775 | 4.2:+33943158 | None:intergenic |
| TTCCTTTGGAGGAGACAGCA+AGG | 0.602076 | 4.2:+33938005 | None:intergenic |
| CTGGCGAAGTGATGATGACT+CGG | 0.603010 | 4.2:-33933331 | MS.gene058034:CDS |
| TCATGTTGGTCTTGTAACAC+TGG | 0.603510 | 4.2:-33929019 | MS.gene058034:CDS |
| TGTTGCAACTCCTAAACGAA+AGG | 0.605260 | 4.2:-33937759 | MS.gene058034:intron |
| AGAGATTAACCAGAAGGAGG+AGG | 0.605787 | 4.2:-33946067 | MS.gene058034:CDS |
| ATGTAGCCACATCAGCTGAT+CGG | 0.606044 | 4.2:-33935480 | MS.gene058034:intron |
| GATCAATTCATCTTCGGCGA+CGG | 0.607021 | 4.2:-33945895 | MS.gene058034:CDS |
| TATCTGAAGAATAAACCAGA+TGG | 0.610837 | 4.2:-33940716 | MS.gene058034:CDS |
| TGAGGAAAAGGCAATTGAGA+AGG | 0.611096 | 4.2:-33933391 | MS.gene058034:CDS |
| ATCTTTGTGAAGATTACACA+AGG | 0.612893 | 4.2:+33933178 | None:intergenic |
| TGCGCAGAAATGAGGATAGG+AGG | 0.613954 | 4.2:+33932387 | None:intergenic |
| GCAAGTGTAGTTGATCTACT+TGG | 0.615929 | 4.2:-33940686 | MS.gene058034:CDS |
| GTACATAGAACAATCTCAAG+TGG | 0.616481 | 4.2:-33940621 | MS.gene058034:CDS |
| AAAACCTTGTTTAGGATCTG+GGG | 0.616944 | 4.2:+33932693 | None:intergenic |
| TGAAAAGCCAAATAGATGGT+GGG | 0.616970 | 4.2:-33937885 | MS.gene058034:CDS |
| TTGTTACGAACGAAGTCCAA+AGG | 0.617644 | 4.2:+33945865 | None:intergenic |
| GACAATGCCAATGAAGACAC+AGG | 0.618838 | 4.2:-33946015 | MS.gene058034:CDS |
| TGATGCGCAGAAATGAGGAT+AGG | 0.622178 | 4.2:+33932384 | None:intergenic |
| GTGTTACAAGACCAACATGA+TGG | 0.623553 | 4.2:+33929022 | None:intergenic |
| GGTATTCCATGGATTTCTGG+TGG | 0.631841 | 4.2:+33945803 | None:intergenic |
| GGAAGAGATTAACCAGAAGG+AGG | 0.636708 | 4.2:-33946070 | MS.gene058034:CDS |
| TGCACCATGGACAAGTCCAA+GGG | 0.636862 | 4.2:+33943171 | None:intergenic |
| TGAAGACACAGGGTATGGTA+CGG | 0.639174 | 4.2:-33946004 | MS.gene058034:CDS |
| GCTACTACAAGGTCATCTCA+AGG | 0.650177 | 4.2:-33932615 | MS.gene058034:intron |
| AGAAGAAGAAAACGATACGG+TGG | 0.651921 | 4.2:-33945926 | MS.gene058034:CDS |
| CCAACACAAAGATTAACCAA+TGG | 0.654625 | 4.2:+33932288 | None:intergenic |
| GGGTATGGTACGGAAGAGAA+CGG | 0.656026 | 4.2:-33945994 | MS.gene058034:CDS |
| TTTCTGGTACAAATTAACAC+CGG | 0.660458 | 4.2:+33945837 | None:intergenic |
| GCTCGCGCATACCATCATGT+TGG | 0.668830 | 4.2:-33929033 | MS.gene058034:CDS |
| TCCTAAGACTACTATCTTGG+GGG | 0.670783 | 4.2:+33941300 | None:intergenic |
| GGAGGAGGAAGATCATCCAA+GGG | 0.676624 | 4.2:-33946052 | MS.gene058034:CDS |
| CTAACATCAATGATTAGCTG+GGG | 0.678208 | 4.2:+33933146 | None:intergenic |
| GAAGGAGAAAAGGAAAGCCG+AGG | 0.681747 | 4.2:-33933373 | MS.gene058034:CDS |
| ACTTCGCCAGTCAATTCCAG+AGG | 0.684911 | 4.2:+33933344 | None:intergenic |
| AGTTACCGGTGAGATTGTAG+GGG | 0.692832 | 4.2:+33945751 | None:intergenic |
| GGAGGAAGATCATCCAAGGG+CGG | 0.693061 | 4.2:-33946049 | MS.gene058034:CDS |
| AGCACCCCAGATCCTAAACA+AGG | 0.697620 | 4.2:-33932697 | MS.gene058034:CDS |
| TTACTGCGACCTTCGCAGAG+AGG | 0.702009 | 4.2:-33928893 | MS.gene058034:CDS |
| ACAATGCCAATGAAGACACA+GGG | 0.704693 | 4.2:-33946014 | MS.gene058034:CDS |
| TCTTTGTGAAGATTACACAA+GGG | 0.712083 | 4.2:+33933179 | None:intergenic |
| ATGTAGCCATCATCAAGACG+CGG | 0.722082 | 4.2:-33932352 | MS.gene058034:CDS |
| GCCATTTGCATAGTGAACGT+AGG | 0.728917 | 4.2:+33944375 | None:intergenic |
| GTTATATAAAGATTCCTGCG+AGG | 0.729306 | 4.2:+33929059 | None:intergenic |
| GCATGTTGAGTCGATCACCG+AGG | 0.779874 | 4.2:-33939835 | MS.gene058034:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 33928807 | 33946094 | 33928807 | ID=MS.gene058034 |
| chr4.2 | mRNA | 33928807 | 33946094 | 33928807 | ID=MS.gene058034.t1;Parent=MS.gene058034 |
| chr4.2 | exon | 33945757 | 33946094 | 33945757 | ID=MS.gene058034.t1.exon1;Parent=MS.gene058034.t1 |
| chr4.2 | CDS | 33945757 | 33946094 | 33945757 | ID=cds.MS.gene058034.t1;Parent=MS.gene058034.t1 |
| chr4.2 | exon | 33944989 | 33945094 | 33944989 | ID=MS.gene058034.t1.exon2;Parent=MS.gene058034.t1 |
| chr4.2 | CDS | 33944989 | 33945094 | 33944989 | ID=cds.MS.gene058034.t1;Parent=MS.gene058034.t1 |
| chr4.2 | exon | 33944363 | 33944476 | 33944363 | ID=MS.gene058034.t1.exon3;Parent=MS.gene058034.t1 |
| chr4.2 | CDS | 33944363 | 33944476 | 33944363 | ID=cds.MS.gene058034.t1;Parent=MS.gene058034.t1 |
| chr4.2 | exon | 33943073 | 33943254 | 33943073 | ID=MS.gene058034.t1.exon4;Parent=MS.gene058034.t1 |
| chr4.2 | CDS | 33943073 | 33943254 | 33943073 | ID=cds.MS.gene058034.t1;Parent=MS.gene058034.t1 |
| chr4.2 | exon | 33941184 | 33941379 | 33941184 | ID=MS.gene058034.t1.exon5;Parent=MS.gene058034.t1 |
| chr4.2 | CDS | 33941184 | 33941379 | 33941184 | ID=cds.MS.gene058034.t1;Parent=MS.gene058034.t1 |
| chr4.2 | exon | 33940541 | 33940789 | 33940541 | ID=MS.gene058034.t1.exon6;Parent=MS.gene058034.t1 |
| chr4.2 | CDS | 33940541 | 33940789 | 33940541 | ID=cds.MS.gene058034.t1;Parent=MS.gene058034.t1 |
| chr4.2 | exon | 33939749 | 33939895 | 33939749 | ID=MS.gene058034.t1.exon7;Parent=MS.gene058034.t1 |
| chr4.2 | CDS | 33939749 | 33939895 | 33939749 | ID=cds.MS.gene058034.t1;Parent=MS.gene058034.t1 |
| chr4.2 | exon | 33939167 | 33939245 | 33939167 | ID=MS.gene058034.t1.exon8;Parent=MS.gene058034.t1 |
| chr4.2 | CDS | 33939167 | 33939245 | 33939167 | ID=cds.MS.gene058034.t1;Parent=MS.gene058034.t1 |
| chr4.2 | exon | 33938001 | 33938114 | 33938001 | ID=MS.gene058034.t1.exon9;Parent=MS.gene058034.t1 |
| chr4.2 | CDS | 33938001 | 33938114 | 33938001 | ID=cds.MS.gene058034.t1;Parent=MS.gene058034.t1 |
| chr4.2 | exon | 33937760 | 33937926 | 33937760 | ID=MS.gene058034.t1.exon10;Parent=MS.gene058034.t1 |
| chr4.2 | CDS | 33937760 | 33937926 | 33937760 | ID=cds.MS.gene058034.t1;Parent=MS.gene058034.t1 |
| chr4.2 | exon | 33935481 | 33935620 | 33935481 | ID=MS.gene058034.t1.exon11;Parent=MS.gene058034.t1 |
| chr4.2 | CDS | 33935481 | 33935620 | 33935481 | ID=cds.MS.gene058034.t1;Parent=MS.gene058034.t1 |
| chr4.2 | exon | 33933317 | 33933443 | 33933317 | ID=MS.gene058034.t1.exon12;Parent=MS.gene058034.t1 |
| chr4.2 | CDS | 33933317 | 33933443 | 33933317 | ID=cds.MS.gene058034.t1;Parent=MS.gene058034.t1 |
| chr4.2 | exon | 33933151 | 33933219 | 33933151 | ID=MS.gene058034.t1.exon13;Parent=MS.gene058034.t1 |
| chr4.2 | CDS | 33933151 | 33933219 | 33933151 | ID=cds.MS.gene058034.t1;Parent=MS.gene058034.t1 |
| chr4.2 | exon | 33932951 | 33933077 | 33932951 | ID=MS.gene058034.t1.exon14;Parent=MS.gene058034.t1 |
| chr4.2 | CDS | 33932951 | 33933077 | 33932951 | ID=cds.MS.gene058034.t1;Parent=MS.gene058034.t1 |
| chr4.2 | exon | 33932616 | 33932730 | 33932616 | ID=MS.gene058034.t1.exon15;Parent=MS.gene058034.t1 |
| chr4.2 | CDS | 33932616 | 33932730 | 33932616 | ID=cds.MS.gene058034.t1;Parent=MS.gene058034.t1 |
| chr4.2 | exon | 33932289 | 33932479 | 33932289 | ID=MS.gene058034.t1.exon16;Parent=MS.gene058034.t1 |
| chr4.2 | CDS | 33932289 | 33932479 | 33932289 | ID=cds.MS.gene058034.t1;Parent=MS.gene058034.t1 |
| chr4.2 | exon | 33932085 | 33932197 | 33932085 | ID=MS.gene058034.t1.exon17;Parent=MS.gene058034.t1 |
| chr4.2 | CDS | 33932085 | 33932197 | 33932085 | ID=cds.MS.gene058034.t1;Parent=MS.gene058034.t1 |
| chr4.2 | exon | 33928807 | 33929109 | 33928807 | ID=MS.gene058034.t1.exon18;Parent=MS.gene058034.t1 |
| chr4.2 | CDS | 33928807 | 33929109 | 33928807 | ID=cds.MS.gene058034.t1;Parent=MS.gene058034.t1 |
| Gene Sequence |
| Protein sequence |
