Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52134.t1 | XP_003607233.2 | 96.6 | 795 | 26 | 1 | 63 | 857 | 63 | 856 | 0.00E+00 | 1460.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52134.t1 | Q9Y5Q9 | 21.4 | 724 | 478 | 9 | 171 | 861 | 153 | 818 | 1.5e-44 | 183.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52134.t1 | A0A072ULC7 | 96.6 | 795 | 26 | 1 | 63 | 857 | 63 | 856 | 0.0e+00 | 1460.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051859 | MS.gene52134 | 0.805588 | 1.24E-49 | -1.69E-46 |
| MS.gene055875 | MS.gene52134 | 0.810641 | 1.04E-50 | -1.69E-46 |
| MS.gene056173 | MS.gene52134 | 0.828339 | 9.50E-55 | -1.69E-46 |
| MS.gene058034 | MS.gene52134 | 0.820517 | 6.58E-53 | -1.69E-46 |
| MS.gene058979 | MS.gene52134 | 0.814571 | 1.44E-51 | -1.69E-46 |
| MS.gene060167 | MS.gene52134 | 0.807272 | 5.48E-50 | -1.69E-46 |
| MS.gene060312 | MS.gene52134 | 0.805293 | 1.43E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene52134 | MS.gene82237 | PPI |
| MS.gene52134 | MS.gene48819 | PPI |
| MS.gene87743 | MS.gene52134 | PPI |
| MS.gene87064 | MS.gene52134 | PPI |
| MS.gene76728 | MS.gene52134 | PPI |
| MS.gene77045 | MS.gene52134 | PPI |
| MS.gene52134 | MS.gene42075 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52134.t1 | MTR_4g074860 | 95.799 | 857 | 35 | 1 | 1 | 857 | 1 | 856 | 0.0 | 1595 |
| MS.gene52134.t1 | MTR_4g074860 | 95.465 | 860 | 38 | 1 | 1 | 860 | 1 | 859 | 0.0 | 1595 |
| MS.gene52134.t1 | MTR_4g074860 | 95.219 | 753 | 35 | 1 | 1 | 753 | 1 | 752 | 0.0 | 1376 |
| MS.gene52134.t1 | MTR_4g079390 | 80.881 | 863 | 151 | 8 | 1 | 860 | 1 | 852 | 0.0 | 1357 |
| MS.gene52134.t1 | MTR_4g074690 | 84.928 | 345 | 39 | 1 | 1 | 345 | 1 | 332 | 0.0 | 580 |
| MS.gene52134.t1 | MTR_7g018620 | 91.554 | 296 | 24 | 1 | 887 | 1182 | 36 | 330 | 4.29e-159 | 477 |
| MS.gene52134.t1 | MTR_6g052002 | 91.837 | 196 | 16 | 0 | 913 | 1108 | 1 | 196 | 2.04e-103 | 330 |
| MS.gene52134.t1 | MTR_2g048385 | 40.299 | 268 | 113 | 5 | 913 | 1177 | 1 | 224 | 4.63e-45 | 163 |
| MS.gene52134.t1 | MTR_4g074700 | 68.317 | 101 | 11 | 2 | 277 | 356 | 1 | 101 | 7.08e-33 | 123 |
| MS.gene52134.t1 | MTR_7g451160 | 46.939 | 147 | 74 | 3 | 919 | 1064 | 8 | 151 | 1.37e-32 | 127 |
| MS.gene52134.t1 | MTR_6g021620 | 46.392 | 97 | 52 | 0 | 913 | 1009 | 1 | 97 | 2.61e-27 | 107 |
| MS.gene52134.t1 | MTR_1g036850 | 44.828 | 87 | 44 | 2 | 912 | 997 | 3 | 86 | 7.60e-16 | 75.9 |
| MS.gene52134.t1 | MTR_8g064380 | 45.614 | 57 | 31 | 0 | 913 | 969 | 1 | 57 | 8.07e-12 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52134.t1 | AT1G17680 | 41.085 | 774 | 398 | 12 | 95 | 860 | 88 | 811 | 6.12e-169 | 523 |
| MS.gene52134.t1 | AT1G17680 | 41.085 | 774 | 398 | 12 | 95 | 860 | 88 | 811 | 6.12e-169 | 523 |
| MS.gene52134.t1 | AT1G17680 | 41.085 | 774 | 398 | 12 | 95 | 860 | 88 | 811 | 6.12e-169 | 523 |
Find 278 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTGGTAATCTTTAAATTTC+TGG | 0.073604 | 4.1:+29320228 | None:intergenic |
| AGCTTTAACTTTCAAATTTA+AGG | 0.080716 | 4.1:+29315486 | None:intergenic |
| GTTGAGGAATTTATAAATTT+TGG | 0.115527 | 4.1:-29319419 | MS.gene52134:CDS |
| CCAAAAGTGATCTGCTTAAA+AGG | 0.134984 | 4.1:-29310463 | MS.gene52134:CDS |
| CATCATCTTGTAGTGTTTCT+AGG | 0.181965 | 4.1:+29313011 | None:intergenic |
| CTCGGTATTCCATGGATTTC+TGG | 0.186432 | 4.1:+29320207 | None:intergenic |
| TTCCAAAGCGTTGGATCTTT+TGG | 0.213096 | 4.1:+29317501 | None:intergenic |
| TTCCTCTTCTTCATCCGATA+TGG | 0.221810 | 4.1:+29305376 | None:intergenic |
| AGGAGGGTGTGGGTGTTTAT+TGG | 0.223443 | 4.1:-29306412 | MS.gene52134:CDS |
| CGCCTTTATTTCCATCAATA+TGG | 0.230843 | 4.1:+29315564 | None:intergenic |
| ACATCAACCCACCATCTATT+TGG | 0.232616 | 4.1:+29312798 | None:intergenic |
| AGCATTCCTCTACAATAATT+TGG | 0.233608 | 4.1:-29307012 | MS.gene52134:CDS |
| ACGGCAGCGGTGACGCTTAT+TGG | 0.254943 | 4.1:-29305598 | MS.gene52134:CDS |
| GATGATCTTCCTCCTCCTTC+TGG | 0.255549 | 4.1:+29320462 | None:intergenic |
| CGAGGTCGCAGACTCATTTA+TGG | 0.263136 | 4.1:-29314733 | MS.gene52134:CDS |
| GCAGATCTGCGCAAATTTCT+TGG | 0.264705 | 4.1:-29305161 | MS.gene52134:CDS |
| TGCAAATGGCCGTCATAAAA+TGG | 0.270751 | 4.1:-29318771 | MS.gene52134:intron |
| TGTGTACATCATACCTTTCT+TGG | 0.273055 | 4.1:+29319383 | None:intergenic |
| CGAAATACACTATCTGTTTC+CGG | 0.273678 | 4.1:+29310422 | None:intergenic |
| TGCTTTCGAAATACAATAAC+TGG | 0.275722 | 4.1:+29316236 | None:intergenic |
| ATGCATCAGACACTCTCTTT+TGG | 0.295723 | 4.1:+29304916 | None:intergenic |
| AAGATTAACCAATGGATTCT+TGG | 0.301139 | 4.1:+29307203 | None:intergenic |
| ACATCTGGATCTGGCGGCTT+TGG | 0.309085 | 4.1:+29305014 | None:intergenic |
| TGATACGAGTCAGGTAAATT+TGG | 0.321774 | 4.1:+29317603 | None:intergenic |
| CTTTCCCCTCCTCAACTAGA+AGG | 0.325341 | 4.1:+29312963 | None:intergenic |
| CCATGTTCATCTTGGAAACT+TGG | 0.329180 | 4.1:-29315455 | MS.gene52134:CDS |
| TCAAAACCTTGTTTAGGATC+TGG | 0.329355 | 4.1:+29307598 | None:intergenic |
| CACAAGGGAGATTCTGTGTT+TGG | 0.332550 | 4.1:+29308101 | None:intergenic |
| ACACAATCAAAACCTTGTTT+AGG | 0.335593 | 4.1:+29307592 | None:intergenic |
| TTCTCCATCCAAACCACCTT+TGG | 0.337671 | 4.1:+29306458 | None:intergenic |
| ACATGCTTGCTTGCATTCTC+TGG | 0.339129 | 4.1:+29314768 | None:intergenic |
| GGACTTGTCCATGGTGCAAT+TGG | 0.341743 | 4.1:-29317573 | MS.gene52134:CDS |
| GATCAGTTTCTTCTGATTGA+AGG | 0.343174 | 4.1:+29305312 | None:intergenic |
| TGAGTTGGAGGAGGAGGGTG+TGG | 0.349317 | 4.1:-29306423 | MS.gene52134:CDS |
| CGTTTCACGTTGCATTCATT+TGG | 0.351721 | 4.1:-29305430 | MS.gene52134:CDS |
| TAGCATCCTTGCAAATGTAT+AGG | 0.352395 | 4.1:-29307949 | MS.gene52134:CDS |
| GACTTGTCCATGGTGCAATT+GGG | 0.352525 | 4.1:-29317572 | MS.gene52134:CDS |
| GCTTTAACTTTCAAATTTAA+GGG | 0.357085 | 4.1:+29315487 | None:intergenic |
| CAAAACCTTGTTTAGGATCT+GGG | 0.361830 | 4.1:+29307599 | None:intergenic |
| TGAATTCACCAAAGGTGGTT+TGG | 0.362211 | 4.1:-29306466 | MS.gene52134:CDS |
| GGCCTTGATCAACTTGGCGC+TGG | 0.372728 | 4.1:-29307078 | MS.gene52134:CDS |
| GTTCAACTTGACCACACTTT+TGG | 0.373143 | 4.1:+29315665 | None:intergenic |
| GGATGGGTTTCACTCGAGTT+TGG | 0.378304 | 4.1:-29305056 | MS.gene52134:CDS |
| AAATTTGCGCAGATCTGCTT+TGG | 0.379252 | 4.1:+29305166 | None:intergenic |
| AATGAGAAGCTTCGATCTCT+TGG | 0.381601 | 4.1:-29307863 | MS.gene52134:CDS |
| GCAGACTCATTTATGGGTCT+TGG | 0.384921 | 4.1:-29314726 | MS.gene52134:CDS |
| AGATTAACCAATGGATTCTT+GGG | 0.387948 | 4.1:+29307204 | None:intergenic |
| GACTCCTAAGACTACTATCT+TGG | 0.389070 | 4.1:+29316199 | None:intergenic |
| ATAAATTCCTCAACCTCAGC+TGG | 0.392533 | 4.1:+29319428 | None:intergenic |
| TGCCATATTGATGGAAATAA+AGG | 0.393502 | 4.1:-29315566 | MS.gene52134:CDS |
| AGCATCCTTGCAAATGTATA+GGG | 0.393989 | 4.1:-29307948 | MS.gene52134:CDS |
| CTACTGTGAATTTCTTTCCC+TGG | 0.397975 | 4.1:+29305647 | None:intergenic |
| TGATATCAGTTCCTATCAAC+TGG | 0.398345 | 4.1:-29305688 | MS.gene52134:intron |
| TGGGGATCACGAAAATGAAA+TGG | 0.398538 | 4.1:-29317553 | MS.gene52134:CDS |
| TCCTCTTCTTCATCCGATAT+GGG | 0.398749 | 4.1:+29305377 | None:intergenic |
| CTCTTCACCACAAACACATC+TGG | 0.400598 | 4.1:+29304999 | None:intergenic |
| TTCGTTCGTAACAATGATTC+CGG | 0.401375 | 4.1:-29320263 | MS.gene52134:CDS |
| GCAGAGCAAACCGTTGCTAC+AGG | 0.402047 | 4.1:-29310510 | MS.gene52134:intron |
| AAAGCCGAGGCAGTGGCCTC+TGG | 0.403885 | 4.1:-29308268 | MS.gene52134:CDS |
| CGGCGACGGTGTAAATCCTT+TGG | 0.404915 | 4.1:-29320288 | MS.gene52134:CDS |
| TCTACTTGGTGCCATATTGA+TGG | 0.405536 | 4.1:-29315575 | MS.gene52134:CDS |
| ACACTTGCATTTACTCCATC+TGG | 0.405571 | 4.1:+29315604 | None:intergenic |
| TCGCTGTCTTCTACCGCCCT+TGG | 0.407223 | 4.1:+29320440 | None:intergenic |
| TGCAGAGAACAAAATGATAT+TGG | 0.410117 | 4.1:-29316264 | MS.gene52134:intron |
| CTGTCTCCTCCAAAGGAATC+TGG | 0.412972 | 4.1:-29312920 | MS.gene52134:intron |
| TACTAACATCAATGATTAGC+TGG | 0.418868 | 4.1:+29308051 | None:intergenic |
| TGGAGGAGACAGCAAGGAAA+TGG | 0.419772 | 4.1:+29312931 | None:intergenic |
| GTCACTCTACTTCAAGTTAT+GGG | 0.422238 | 4.1:-29304862 | MS.gene52134:CDS |
| CCCTCCTCCTCCAACTCAAT+GGG | 0.422285 | 4.1:+29306428 | None:intergenic |
| GCAAAAGTTTATAAGCTTCA+AGG | 0.423524 | 4.1:+29307226 | None:intergenic |
| TCCTTGCCGCGTCTTGATGA+TGG | 0.424711 | 4.1:+29307253 | None:intergenic |
| TGACTCGGATGATGAGCTTC+AGG | 0.426120 | 4.1:-29308224 | MS.gene52134:intron |
| TCATCTTGGAAACTTGGAAA+TGG | 0.426366 | 4.1:-29315449 | MS.gene52134:CDS |
| CGAAAAGATATCACAGATGT+TGG | 0.427095 | 4.1:-29318813 | MS.gene52134:CDS |
| ACTCCTAAGACTACTATCTT+GGG | 0.427608 | 4.1:+29316200 | None:intergenic |
| AGGCAATTGAGAAGGAGAAA+AGG | 0.427635 | 4.1:-29308291 | MS.gene52134:CDS |
| CTCCAAAAGATCCAACGCTT+TGG | 0.429606 | 4.1:-29317503 | MS.gene52134:CDS |
| TATCAATCTCTCTCTGAAAT+CGG | 0.431671 | 4.1:-29307912 | MS.gene52134:CDS |
| TGCTAGATGTTATCAAGCGT+TGG | 0.439832 | 4.1:-29314119 | MS.gene52134:CDS |
| AGGTAGAGAATGCAGAAGAA+AGG | 0.440758 | 4.1:-29305241 | MS.gene52134:CDS |
| TGTCACTCTACTTCAAGTTA+TGG | 0.441433 | 4.1:-29304863 | MS.gene52134:CDS |
| GCCTTGATCAACTTGGCGCT+GGG | 0.442089 | 4.1:-29307077 | MS.gene52134:CDS |
| TCGGATGAAGAAGAGGAATC+TGG | 0.442177 | 4.1:-29305371 | MS.gene52134:CDS |
| GCCCATTGAGTTGGAGGAGG+AGG | 0.442199 | 4.1:-29306429 | MS.gene52134:CDS |
| TAGTTACCGGTGAGATTGTA+GGG | 0.443984 | 4.1:+29320157 | None:intergenic |
| TTACCAGTACCAGATTCCTT+TGG | 0.444295 | 4.1:+29312911 | None:intergenic |
| GTTATCAAGCGTTGGGAGAA+AGG | 0.444433 | 4.1:-29314111 | MS.gene52134:CDS |
| GGCGGCTTTGGCAACGGTGG+AGG | 0.444655 | 4.1:+29305026 | None:intergenic |
| ATCCTCTGGTTTGATCGAAC+TGG | 0.445222 | 4.1:-29304970 | MS.gene52134:CDS |
| TTAAATTTGAAAGTTAAAGC+TGG | 0.445910 | 4.1:-29315484 | MS.gene52134:CDS |
| CTGCTCTGATACCAGTTGAT+AGG | 0.445985 | 4.1:+29305677 | None:intergenic |
| TTAGTTACCGGTGAGATTGT+AGG | 0.449175 | 4.1:+29320156 | None:intergenic |
| GGGCTGATGCAGGCAGCCCT+TGG | 0.449197 | 4.1:-29306503 | MS.gene52134:intron |
| ACCCTCCTCCTCCAACTCAA+TGG | 0.449681 | 4.1:+29306427 | None:intergenic |
| GGTAGAGAATGCAGAAGAAA+GGG | 0.450272 | 4.1:-29305240 | MS.gene52134:CDS |
| GGAATCTGCCATGTTCATCT+TGG | 0.450294 | 4.1:-29315463 | MS.gene52134:CDS |
| TTCAAAGATTCACGTACTAA+AGG | 0.452862 | 4.1:+29312702 | None:intergenic |
| GCTAGATGTTATCAAGCGTT+GGG | 0.456876 | 4.1:-29314118 | MS.gene52134:CDS |
| TCAAAGATTCACGTACTAAA+GGG | 0.458130 | 4.1:+29312703 | None:intergenic |
| GGTAGAGAAACTTGCTGCTC+CGG | 0.460694 | 4.1:-29310441 | MS.gene52134:CDS |
| CTTCATCCGATATGGGTAGA+AGG | 0.461792 | 4.1:+29305384 | None:intergenic |
| AGAGGAATCTGGATTGGAAT+GGG | 0.463955 | 4.1:-29305360 | MS.gene52134:CDS |
| TGTTGAAGCACGCATAACTT+TGG | 0.467038 | 4.1:-29312990 | MS.gene52134:CDS |
| GGGGATCACGAAAATGAAAT+GGG | 0.467202 | 4.1:-29317552 | MS.gene52134:CDS |
| CCAGTACCAGATTCCTTTGG+AGG | 0.471523 | 4.1:+29312914 | None:intergenic |
| ATTTGTCATGTCTTGTATCT+CGG | 0.471744 | 4.1:+29307355 | None:intergenic |
| CAAAAGTGATCTGCTTAAAA+GGG | 0.472363 | 4.1:-29310462 | MS.gene52134:CDS |
| TTCACCAAAGGTGGTTTGGA+TGG | 0.472721 | 4.1:-29306462 | MS.gene52134:CDS |
| TTTGGTGAATTCAATGCCTT+AGG | 0.473561 | 4.1:+29306476 | None:intergenic |
| TTCCCTTGCCTTCTTAGAAG+AGG | 0.474332 | 4.1:+29319472 | None:intergenic |
| GAGGTCGCAGACTCATTTAT+GGG | 0.475412 | 4.1:-29314732 | MS.gene52134:CDS |
| AAGCATCAGTGTGTTGTACA+AGG | 0.483840 | 4.1:-29307038 | MS.gene52134:CDS |
| CATAAATGAGTCTGCGACCT+CGG | 0.485715 | 4.1:+29314734 | None:intergenic |
| GAAGATGATCAATTCATCTT+CGG | 0.486101 | 4.1:-29320308 | MS.gene52134:CDS |
| TGAAGAAGAGGAATCTGGAT+TGG | 0.486518 | 4.1:-29305366 | MS.gene52134:CDS |
| CCAAGGGTGTGATACGAGTC+AGG | 0.486679 | 4.1:+29317594 | None:intergenic |
| GGCAGCCCTTGGTTCGCCTA+AGG | 0.486819 | 4.1:-29306492 | MS.gene52134:CDS |
| ACCATACCCTGTGTCTTCAT+TGG | 0.487379 | 4.1:+29320412 | None:intergenic |
| GGCTTCCCTTCTAGTTGAGG+AGG | 0.488281 | 4.1:-29312969 | MS.gene52134:CDS |
| GCCTACGTTCACTATGCAAA+TGG | 0.490448 | 4.1:-29318785 | MS.gene52134:CDS |
| ACCACAAACACATCTGGATC+TGG | 0.490838 | 4.1:+29305005 | None:intergenic |
| TGGAAACTTGGAAATGGCTC+AGG | 0.490959 | 4.1:-29315443 | MS.gene52134:intron |
| GAAGGAATTGCCCATTGAGT+TGG | 0.491543 | 4.1:-29306438 | MS.gene52134:CDS |
| TAGAGACCTTCTACCCATAT+CGG | 0.491623 | 4.1:-29305390 | MS.gene52134:CDS |
| GGATCTGGCGGCTTTGGCAA+CGG | 0.492872 | 4.1:+29305020 | None:intergenic |
| TGCGAAACCGTGCTCTCGTA+TGG | 0.493588 | 4.1:-29305496 | MS.gene52134:CDS |
| CCTGACTCGTATCACACCCT+TGG | 0.497427 | 4.1:-29317594 | MS.gene52134:CDS |
| GGAATTGCCCATTGAGTTGG+AGG | 0.498028 | 4.1:-29306435 | MS.gene52134:CDS |
| GAAAAGGAAAGCCGAGGCAG+TGG | 0.498777 | 4.1:-29308275 | MS.gene52134:CDS |
| TTTGGCTTCCCTTCTAGTTG+AGG | 0.498866 | 4.1:-29312972 | MS.gene52134:CDS |
| TGTTGCAACTCCTAAACAAA+AGG | 0.500960 | 4.1:-29312679 | MS.gene52134:intron |
| TATCAGAGCAGTTCTGATCC+AGG | 0.503304 | 4.1:-29305665 | MS.gene52134:CDS |
| GGCATTGAATTCACCAAAGG+TGG | 0.504007 | 4.1:-29306471 | MS.gene52134:CDS |
| TTCCACAATGATGACATTCA+CGG | 0.505935 | 4.1:+29305202 | None:intergenic |
| TGGGTTTCACTCGAGTTTGG+CGG | 0.506254 | 4.1:-29305053 | MS.gene52134:CDS |
| TTCCTTGCTGTCTCCTCCAA+AGG | 0.507093 | 4.1:-29312927 | MS.gene52134:CDS |
| GGGTGAGAAGTTGTTGGAGG+CGG | 0.507467 | 4.1:-29305528 | MS.gene52134:CDS |
| CCATTGGTTAATCTTTGTGT+TGG | 0.507574 | 4.1:-29307195 | MS.gene52134:intron |
| CTCTCGTATGGTGGCAGTGG+TGG | 0.508076 | 4.1:-29305484 | MS.gene52134:CDS |
| GCTTCCCTTCTAGTTGAGGA+GGG | 0.511143 | 4.1:-29312968 | MS.gene52134:CDS |
| AAGAGGAATCTGGATTGGAA+TGG | 0.512534 | 4.1:-29305361 | MS.gene52134:CDS |
| TGTAATCTTCACAAAGATGA+AGG | 0.514832 | 4.1:-29308080 | MS.gene52134:CDS |
| TGTAACATATTTCAGATCAG+AGG | 0.517237 | 4.1:-29312756 | MS.gene52134:CDS |
| CACACCCTTGGACTTGTCCA+TGG | 0.519632 | 4.1:-29317582 | MS.gene52134:CDS |
| ATTCTGAAAAGCCAAATAGA+TGG | 0.519704 | 4.1:-29312809 | MS.gene52134:CDS |
| GAGTTGGAGGAGGAGGGTGT+GGG | 0.521882 | 4.1:-29306422 | MS.gene52134:CDS |
| ACAGGAGGGTGAGAAGTTGT+TGG | 0.524756 | 4.1:-29305534 | MS.gene52134:CDS |
| GCTTTGGCAACGGTGGAGGT+AGG | 0.525470 | 4.1:+29305030 | None:intergenic |
| ATGGACATGCCACAATTTGA+CGG | 0.525488 | 4.1:-29305617 | MS.gene52134:CDS |
| AGCTTGGAATTGCTACTACA+AGG | 0.529259 | 4.1:-29307533 | MS.gene52134:CDS |
| GAAAAGATATCACAGATGTT+GGG | 0.529261 | 4.1:-29318812 | MS.gene52134:CDS |
| GGTAAACCCAGCTGAGGTTG+AGG | 0.531045 | 4.1:-29319435 | MS.gene52134:CDS |
| CCAAGTTTCCAAGATGAACA+TGG | 0.532871 | 4.1:+29315455 | None:intergenic |
| TTTGATTTGCCCTGTAGCAA+CGG | 0.533939 | 4.1:+29310500 | None:intergenic |
| CTCGCCAACTCGCATGTGGA+TGG | 0.534527 | 4.1:+29305453 | None:intergenic |
| TGCACTAAAAGCAGCAGCTA+AGG | 0.541266 | 4.1:-29316085 | MS.gene52134:intron |
| ACCCAGCGCCAAGTTGATCA+AGG | 0.542488 | 4.1:+29307076 | None:intergenic |
| GGAGATCTGTAAGAACAGCC+AGG | 0.543215 | 4.1:-29306991 | MS.gene52134:intron |
| TAAACTGATGCGCAGAAATG+AGG | 0.544020 | 4.1:+29307286 | None:intergenic |
| ATCGAGAGCTCGGTATTCCA+TGG | 0.544191 | 4.1:+29320199 | None:intergenic |
| CCCATTGAGTTGGAGGAGGA+GGG | 0.544646 | 4.1:-29306428 | MS.gene52134:CDS |
| GAAACAGATAGTGTATTTCG+AGG | 0.546110 | 4.1:-29310419 | MS.gene52134:CDS |
| ACTAACATCAATGATTAGCT+GGG | 0.546575 | 4.1:+29308052 | None:intergenic |
| GCCAGATCCAGATGTGTTTG+TGG | 0.548708 | 4.1:-29305006 | MS.gene52134:CDS |
| AGGAACGGCCTTGATCAACT+TGG | 0.548967 | 4.1:-29307084 | MS.gene52134:CDS |
| AGACCTCTTCTAAGAAGGCA+AGG | 0.549208 | 4.1:-29319475 | MS.gene52134:CDS |
| GTGAAGAGTGGATTATCCTC+TGG | 0.549909 | 4.1:-29304984 | MS.gene52134:CDS |
| CAGTGGCCTCTGGAATTGAC+TGG | 0.549957 | 4.1:-29308258 | MS.gene52134:CDS |
| CTTCCCTTCTAGTTGAGGAG+GGG | 0.550556 | 4.1:-29312967 | MS.gene52134:CDS |
| CAATCAGAAGAAACTGATCA+AGG | 0.552737 | 4.1:-29305308 | MS.gene52134:CDS |
| GCCATCATCAAGACGCGGCA+AGG | 0.554004 | 4.1:-29307254 | MS.gene52134:CDS |
| TTATGTTATCCTTCACCTTG+AGG | 0.554382 | 4.1:-29304825 | None:intergenic |
| TTTGCATGAAGTTGTCAGGC+TGG | 0.554814 | 4.1:-29317628 | MS.gene52134:CDS |
| GCCAATGAAGACACAGGGTA+TGG | 0.556221 | 4.1:-29320413 | MS.gene52134:CDS |
| TCACCGCTGCCGTCAAATTG+TGG | 0.556244 | 4.1:+29305608 | None:intergenic |
| TCTGGCGGCTTTGGCAACGG+TGG | 0.557558 | 4.1:+29305023 | None:intergenic |
| ATGCACAGAGTGTTGCAGCT+TGG | 0.557784 | 4.1:-29307549 | MS.gene52134:CDS |
| ATAGAACAATCTCAAGTGGT+TGG | 0.557899 | 4.1:-29315520 | MS.gene52134:CDS |
| TTGCACCATGGACAAGTCCA+AGG | 0.558983 | 4.1:+29317577 | None:intergenic |
| AGGGAAAGAAATTCACAGTA+GGG | 0.559063 | 4.1:-29305645 | MS.gene52134:CDS |
| TAAATTCCTCAACCTCAGCT+GGG | 0.559401 | 4.1:+29319429 | None:intergenic |
| CTGAAAAGCCAAATAGATGG+TGG | 0.560031 | 4.1:-29312806 | MS.gene52134:CDS |
| CACTCACCGATCAGCTGATG+TGG | 0.561902 | 4.1:+29310382 | None:intergenic |
| TGAAGTAGAGTGACAGAGCA+AGG | 0.563368 | 4.1:+29304871 | None:intergenic |
| ACTTGTCCATGGTGCAATTG+GGG | 0.566458 | 4.1:-29317571 | MS.gene52134:CDS |
| TGAGTAGTGTGTTCGAATCG+AGG | 0.566493 | 4.1:-29305109 | MS.gene52134:CDS |
| TGAAGAGACCTCTTCTAAGA+AGG | 0.567023 | 4.1:-29319480 | MS.gene52134:CDS |
| GTAACATATTTCAGATCAGA+GGG | 0.567514 | 4.1:-29312755 | MS.gene52134:CDS |
| TACGAGAGCACGGTTTCGCA+AGG | 0.568686 | 4.1:+29305499 | None:intergenic |
| CAGGGAAAGAAATTCACAGT+AGG | 0.571169 | 4.1:-29305646 | MS.gene52134:CDS |
| CAGAGCAAACCGTTGCTACA+GGG | 0.574847 | 4.1:-29310509 | MS.gene52134:CDS |
| GGGAAAGAAATTCACAGTAG+GGG | 0.575488 | 4.1:-29305644 | MS.gene52134:CDS |
| AATGGAAGAGATTAACCAGA+AGG | 0.576659 | 4.1:-29320477 | MS.gene52134:CDS |
| TTTCCCCTCCTCAACTAGAA+GGG | 0.577242 | 4.1:+29312964 | None:intergenic |
| GGTAGAAGGTCTCTATACTC+TGG | 0.578063 | 4.1:+29305398 | None:intergenic |
| AGATCTCCAAATTATTGTAG+AGG | 0.578673 | 4.1:+29307006 | None:intergenic |
| TGCTTCCCTATACATTTGCA+AGG | 0.578680 | 4.1:+29307943 | None:intergenic |
| CTCCTAAGACTACTATCTTG+GGG | 0.582097 | 4.1:+29316201 | None:intergenic |
| TACTTCAAGTTATGGGACCC+TGG | 0.585642 | 4.1:-29304855 | MS.gene52134:CDS |
| CTCCGTGAATGTCATCATTG+TGG | 0.585781 | 4.1:-29305204 | MS.gene52134:CDS |
| TTTGGAAGACGCTTTATGTG+TGG | 0.586815 | 4.1:-29317485 | MS.gene52134:CDS |
| GCTTTCGGTTATCGAGAGCT+CGG | 0.586940 | 4.1:+29320189 | None:intergenic |
| GATGTGTTTGTGGTGAAGAG+TGG | 0.587223 | 4.1:-29304996 | MS.gene52134:CDS |
| AGGAGGAGGAAGATCATCCA+AGG | 0.587252 | 4.1:-29320457 | MS.gene52134:CDS |
| ATTGCCCATTGAGTTGGAGG+AGG | 0.587711 | 4.1:-29306432 | MS.gene52134:CDS |
| GCAGCGGTGACGCTTATTGG+TGG | 0.588419 | 4.1:-29305595 | MS.gene52134:CDS |
| ACCCATATCGGATGAAGAAG+AGG | 0.588817 | 4.1:-29305378 | MS.gene52134:CDS |
| TAAAGCGTCTTCCAAAGCGT+TGG | 0.591231 | 4.1:+29317492 | None:intergenic |
| AGAAGAAGAAGAAAACGATA+CGG | 0.591701 | 4.1:-29320336 | MS.gene52134:CDS |
| GTGCTCTCGTATGGTGGCAG+TGG | 0.594027 | 4.1:-29305487 | MS.gene52134:CDS |
| AACTACCCCTACAATCTCAC+CGG | 0.596811 | 4.1:-29320163 | MS.gene52134:intron |
| AATTCCAGAGGCCACTGCCT+CGG | 0.597422 | 4.1:+29308264 | None:intergenic |
| ATCAGAGCAGTTCTGATCCA+GGG | 0.597438 | 4.1:-29305664 | MS.gene52134:CDS |
| AGAGGGCAAGAGACCAAGAA+AGG | 0.599590 | 4.1:-29319396 | MS.gene52134:intron |
| GGAGGGTGAGAAGTTGTTGG+AGG | 0.600011 | 4.1:-29305531 | MS.gene52134:CDS |
| GAGTAGTGTGTTCGAATCGA+GGG | 0.600652 | 4.1:-29305108 | MS.gene52134:CDS |
| AGATTACCACCAGAAATCCA+TGG | 0.600997 | 4.1:-29320216 | MS.gene52134:CDS |
| CGTGATCCCCAATTGCACCA+TGG | 0.601775 | 4.1:+29317565 | None:intergenic |
| TTCCTTTGGAGGAGACAGCA+AGG | 0.602076 | 4.1:+29312925 | None:intergenic |
| GGATAACATAACTGTCCACC+AGG | 0.602898 | 4.1:+29304837 | None:intergenic |
| CTGGCGAAGTGATGATGACT+CGG | 0.603010 | 4.1:-29308239 | MS.gene52134:CDS |
| AGAGATTAACCAGAAGGAGG+AGG | 0.605787 | 4.1:-29320471 | MS.gene52134:CDS |
| ATGTAGCCACATCAGCTGAT+CGG | 0.606044 | 4.1:-29310388 | MS.gene52134:intron |
| GATCAATTCATCTTCGGCGA+CGG | 0.607021 | 4.1:-29320302 | MS.gene52134:CDS |
| ATGCCACAATTTGACGGCAG+CGG | 0.607808 | 4.1:-29305611 | MS.gene52134:CDS |
| TCACCTTGTCCTCAAGGTGA+AGG | 0.608165 | 4.1:+29304816 | None:intergenic |
| AAAGGTGGTTTGGATGGAGA+AGG | 0.609370 | 4.1:-29306456 | MS.gene52134:CDS |
| TATCTGAAGAATAAACCAGA+TGG | 0.610837 | 4.1:-29315619 | MS.gene52134:CDS |
| TGAGGAAAAGGCAATTGAGA+AGG | 0.611096 | 4.1:-29308299 | MS.gene52134:CDS |
| ATCTTTGTGAAGATTACACA+AGG | 0.612893 | 4.1:+29308085 | None:intergenic |
| GATGCCATCCACATGCGAGT+TGG | 0.613742 | 4.1:-29305457 | MS.gene52134:CDS |
| TGCGCAGAAATGAGGATAGG+AGG | 0.613954 | 4.1:+29307294 | None:intergenic |
| AACGCTCGCCAACTCGCATG+TGG | 0.614660 | 4.1:+29305449 | None:intergenic |
| GACCTCTTCTAAGAAGGCAA+GGG | 0.615524 | 4.1:-29319474 | MS.gene52134:CDS |
| GCAAGTGTAGTTGATCTACT+TGG | 0.615929 | 4.1:-29315589 | MS.gene52134:CDS |
| GTACATAGAACAATCTCAAG+TGG | 0.616481 | 4.1:-29315524 | MS.gene52134:CDS |
| AAAACCTTGTTTAGGATCTG+GGG | 0.616944 | 4.1:+29307600 | None:intergenic |
| TGAAAAGCCAAATAGATGGT+GGG | 0.616970 | 4.1:-29312805 | MS.gene52134:CDS |
| TCAATGCCTTAGGCGAACCA+AGG | 0.617597 | 4.1:+29306486 | None:intergenic |
| TTGTTACGAACGAAGTCCAA+AGG | 0.617644 | 4.1:+29320272 | None:intergenic |
| GACAATGCCAATGAAGACAC+AGG | 0.618838 | 4.1:-29320419 | MS.gene52134:CDS |
| GGAAAGAAATTCACAGTAGG+GGG | 0.621732 | 4.1:-29305643 | MS.gene52134:CDS |
| TGATGCGCAGAAATGAGGAT+AGG | 0.622178 | 4.1:+29307291 | None:intergenic |
| CAATGCCTTAGGCGAACCAA+GGG | 0.624185 | 4.1:+29306487 | None:intergenic |
| GGTATTCCATGGATTTCTGG+TGG | 0.631841 | 4.1:+29320210 | None:intergenic |
| GGAAGAGATTAACCAGAAGG+AGG | 0.636708 | 4.1:-29320474 | MS.gene52134:CDS |
| TGCACCATGGACAAGTCCAA+GGG | 0.636862 | 4.1:+29317578 | None:intergenic |
| TGAAGACACAGGGTATGGTA+CGG | 0.639174 | 4.1:-29320408 | MS.gene52134:CDS |
| GAAACCGTGCTCTCGTATGG+TGG | 0.641075 | 4.1:-29305493 | MS.gene52134:CDS |
| TGATGTTGTGGGAACACAGG+AGG | 0.649865 | 4.1:-29305549 | MS.gene52134:CDS |
| GCTACTACAAGGTCATCTCA+AGG | 0.650177 | 4.1:-29307522 | MS.gene52134:intron |
| AGAAGAAGAAAACGATACGG+TGG | 0.651921 | 4.1:-29320333 | MS.gene52134:CDS |
| CCAACACAAAGATTAACCAA+TGG | 0.654625 | 4.1:+29307195 | None:intergenic |
| GGGTATGGTACGGAAGAGAA+CGG | 0.656026 | 4.1:-29320398 | MS.gene52134:CDS |
| TTTCTGGTACAAATTAACAC+CGG | 0.660458 | 4.1:+29320244 | None:intergenic |
| GATTGAAGGTTGAATGTGTG+AGG | 0.661119 | 4.1:+29305326 | None:intergenic |
| GATGTTGTGGGAACACAGGA+GGG | 0.665539 | 4.1:-29305548 | MS.gene52134:CDS |
| TAAGGCATTGAATTCACCAA+AGG | 0.665745 | 4.1:-29306474 | MS.gene52134:CDS |
| ACTGCCACCATACGAGAGCA+CGG | 0.670073 | 4.1:+29305489 | None:intergenic |
| TCCTAAGACTACTATCTTGG+GGG | 0.670783 | 4.1:+29316202 | None:intergenic |
| TTCAAGTTATGGGACCCTGG+TGG | 0.675989 | 4.1:-29304852 | MS.gene52134:CDS |
| GGAGGAGGAAGATCATCCAA+GGG | 0.676624 | 4.1:-29320456 | MS.gene52134:CDS |
| CTAACATCAATGATTAGCTG+GGG | 0.678208 | 4.1:+29308053 | None:intergenic |
| TGCCAGTTCGATCAAACCAG+AGG | 0.680110 | 4.1:+29304968 | None:intergenic |
| GAAAGAAATTCACAGTAGGG+GGG | 0.680620 | 4.1:-29305642 | MS.gene52134:CDS |
| GAAGGAGAAAAGGAAAGCCG+AGG | 0.681747 | 4.1:-29308281 | MS.gene52134:CDS |
| ACTTCGCCAGTCAATTCCAG+AGG | 0.684911 | 4.1:+29308252 | None:intergenic |
| ACAAACACATCTGGATCTGG+CGG | 0.689367 | 4.1:+29305008 | None:intergenic |
| AGTTACCGGTGAGATTGTAG+GGG | 0.692832 | 4.1:+29320158 | None:intergenic |
| GGAGGAAGATCATCCAAGGG+CGG | 0.693061 | 4.1:-29320453 | MS.gene52134:CDS |
| AGCACCCCAGATCCTAAACA+AGG | 0.697620 | 4.1:-29307604 | MS.gene52134:CDS |
| ACAATGCCAATGAAGACACA+GGG | 0.704693 | 4.1:-29320418 | MS.gene52134:CDS |
| TCTTTGTGAAGATTACACAA+GGG | 0.712083 | 4.1:+29308086 | None:intergenic |
| CACAATGATGACATTCACGG+AGG | 0.718745 | 4.1:+29305205 | None:intergenic |
| ATGTAGCCATCATCAAGACG+CGG | 0.722082 | 4.1:-29307259 | MS.gene52134:CDS |
| GCCATTTGCATAGTGAACGT+AGG | 0.728917 | 4.1:+29318784 | None:intergenic |
| GATAACATAACTGTCCACCA+GGG | 0.763454 | 4.1:+29304838 | None:intergenic |
| GCATGTTGAGTCGATCACCG+AGG | 0.779874 | 4.1:-29314751 | MS.gene52134:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 29304827 | 29320498 | 29304827 | ID=MS.gene52134 |
| chr4.1 | mRNA | 29304827 | 29320498 | 29304827 | ID=MS.gene52134.t1;Parent=MS.gene52134 |
| chr4.1 | exon | 29320164 | 29320498 | 29320164 | ID=MS.gene52134.t1.exon1;Parent=MS.gene52134.t1 |
| chr4.1 | CDS | 29320164 | 29320498 | 29320164 | ID=cds.MS.gene52134.t1;Parent=MS.gene52134.t1 |
| chr4.1 | exon | 29319397 | 29319502 | 29319397 | ID=MS.gene52134.t1.exon2;Parent=MS.gene52134.t1 |
| chr4.1 | CDS | 29319397 | 29319502 | 29319397 | ID=cds.MS.gene52134.t1;Parent=MS.gene52134.t1 |
| chr4.1 | exon | 29318772 | 29318885 | 29318772 | ID=MS.gene52134.t1.exon3;Parent=MS.gene52134.t1 |
| chr4.1 | CDS | 29318772 | 29318885 | 29318772 | ID=cds.MS.gene52134.t1;Parent=MS.gene52134.t1 |
| chr4.1 | exon | 29317480 | 29317661 | 29317480 | ID=MS.gene52134.t1.exon4;Parent=MS.gene52134.t1 |
| chr4.1 | CDS | 29317480 | 29317661 | 29317480 | ID=cds.MS.gene52134.t1;Parent=MS.gene52134.t1 |
| chr4.1 | exon | 29316086 | 29316281 | 29316086 | ID=MS.gene52134.t1.exon5;Parent=MS.gene52134.t1 |
| chr4.1 | CDS | 29316086 | 29316281 | 29316086 | ID=cds.MS.gene52134.t1;Parent=MS.gene52134.t1 |
| chr4.1 | exon | 29315444 | 29315692 | 29315444 | ID=MS.gene52134.t1.exon6;Parent=MS.gene52134.t1 |
| chr4.1 | CDS | 29315444 | 29315692 | 29315444 | ID=cds.MS.gene52134.t1;Parent=MS.gene52134.t1 |
| chr4.1 | exon | 29314665 | 29314811 | 29314665 | ID=MS.gene52134.t1.exon7;Parent=MS.gene52134.t1 |
| chr4.1 | CDS | 29314665 | 29314811 | 29314665 | ID=cds.MS.gene52134.t1;Parent=MS.gene52134.t1 |
| chr4.1 | exon | 29314083 | 29314161 | 29314083 | ID=MS.gene52134.t1.exon8;Parent=MS.gene52134.t1 |
| chr4.1 | CDS | 29314083 | 29314161 | 29314083 | ID=cds.MS.gene52134.t1;Parent=MS.gene52134.t1 |
| chr4.1 | exon | 29312921 | 29313034 | 29312921 | ID=MS.gene52134.t1.exon9;Parent=MS.gene52134.t1 |
| chr4.1 | CDS | 29312921 | 29313034 | 29312921 | ID=cds.MS.gene52134.t1;Parent=MS.gene52134.t1 |
| chr4.1 | exon | 29312680 | 29312846 | 29312680 | ID=MS.gene52134.t1.exon10;Parent=MS.gene52134.t1 |
| chr4.1 | CDS | 29312680 | 29312846 | 29312680 | ID=cds.MS.gene52134.t1;Parent=MS.gene52134.t1 |
| chr4.1 | exon | 29310389 | 29310528 | 29310389 | ID=MS.gene52134.t1.exon11;Parent=MS.gene52134.t1 |
| chr4.1 | CDS | 29310389 | 29310528 | 29310389 | ID=cds.MS.gene52134.t1;Parent=MS.gene52134.t1 |
| chr4.1 | exon | 29308225 | 29308351 | 29308225 | ID=MS.gene52134.t1.exon12;Parent=MS.gene52134.t1 |
| chr4.1 | CDS | 29308225 | 29308351 | 29308225 | ID=cds.MS.gene52134.t1;Parent=MS.gene52134.t1 |
| chr4.1 | exon | 29308058 | 29308126 | 29308058 | ID=MS.gene52134.t1.exon13;Parent=MS.gene52134.t1 |
| chr4.1 | CDS | 29308058 | 29308126 | 29308058 | ID=cds.MS.gene52134.t1;Parent=MS.gene52134.t1 |
| chr4.1 | exon | 29307858 | 29307984 | 29307858 | ID=MS.gene52134.t1.exon14;Parent=MS.gene52134.t1 |
| chr4.1 | CDS | 29307858 | 29307984 | 29307858 | ID=cds.MS.gene52134.t1;Parent=MS.gene52134.t1 |
| chr4.1 | exon | 29307523 | 29307637 | 29307523 | ID=MS.gene52134.t1.exon15;Parent=MS.gene52134.t1 |
| chr4.1 | CDS | 29307523 | 29307637 | 29307523 | ID=cds.MS.gene52134.t1;Parent=MS.gene52134.t1 |
| chr4.1 | exon | 29307196 | 29307386 | 29307196 | ID=MS.gene52134.t1.exon16;Parent=MS.gene52134.t1 |
| chr4.1 | CDS | 29307196 | 29307386 | 29307196 | ID=cds.MS.gene52134.t1;Parent=MS.gene52134.t1 |
| chr4.1 | exon | 29306992 | 29307104 | 29306992 | ID=MS.gene52134.t1.exon17;Parent=MS.gene52134.t1 |
| chr4.1 | CDS | 29306992 | 29307104 | 29306992 | ID=cds.MS.gene52134.t1;Parent=MS.gene52134.t1 |
| chr4.1 | exon | 29306411 | 29306513 | 29306411 | ID=MS.gene52134.t1.exon18;Parent=MS.gene52134.t1 |
| chr4.1 | CDS | 29306411 | 29306513 | 29306411 | ID=cds.MS.gene52134.t1;Parent=MS.gene52134.t1 |
| chr4.1 | exon | 29304827 | 29305701 | 29304827 | ID=MS.gene52134.t1.exon19;Parent=MS.gene52134.t1 |
| chr4.1 | CDS | 29304827 | 29305701 | 29304827 | ID=cds.MS.gene52134.t1;Parent=MS.gene52134.t1 |
| Gene Sequence |
| Protein sequence |
