AlfalfaGEDB | MS.gene05879

M. sativa cultivar XinJiangDaYe / MS.gene05879

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF12854.10 PF13041.9 PF20431.1

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05879.t1	XP_003630737.1	96	447	18	0	1	447	1	447	7.50E-254	885.9

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05879.t1	Q3ECB8	58.1	437	181	1	12	446	30	466	6.9e-155	548.5

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05879.t1	G7L845	96.0	447	18	0	1	447	1	447	5.4e-254	885.9

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene055808	MS.gene05879	0.817786	2.75E-52	-1.69E-46
MS.gene056091	MS.gene05879	0.827803	1.28E-54	-1.69E-46
MS.gene05879	MS.gene05953	0.90518	5.64E-80	-1.69E-46
MS.gene05879	MS.gene05954	0.822388	2.43E-53	-1.69E-46
MS.gene05879	MS.gene062435	0.80171	7.92E-49	-1.69E-46
MS.gene05879	MS.gene068159	0.80234	5.88E-49	-1.69E-46
MS.gene05879	MS.gene071568	0.907754	3.60E-81	-1.69E-46
MS.gene05879	MS.gene071570	0.822519	2.27E-53	-1.69E-46
MS.gene05879	MS.gene25207	0.80931	2.02E-50	-1.69E-46
MS.gene05879	MS.gene31468	0.808443	3.09E-50	-1.69E-46

Showing 1 to 10 of 12 entries

Previous1 2Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
MS.gene002550	MS.gene05879	PPI
MS.gene034408	MS.gene05879	PPI
MS.gene05879	MS.gene031685	PPI
MS.gene05879	MS.gene006623	PPI
MS.gene05879	MS.gene01530	PPI
MS.gene05879	MS.gene84284	PPI
MS.gene05879	MS.gene35490	PPI
MS.gene05879	MS.gene004223	PPI
MS.gene05879	MS.gene045573	PPI
MS.gene05879	MS.gene01527	PPI

Showing 1 to 10 of 14 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05879.t1	MTR_8g102760	95.973	447	18	0	1	447	1	447	0.0	899
MS.gene05879.t1	MTR_2g018870	41.667	396	227	2	47	442	92	483	1.49e-107	331
MS.gene05879.t1	MTR_1g012380	37.089	426	258	5	24	442	48	470	9.97e-100	310
MS.gene05879.t1	MTR_1g012380	25.271	277	192	6	118	383	36	308	1.19e-18	89.0
MS.gene05879.t1	MTR_7g033400	39.427	454	240	7	24	445	36	486	1.68e-99	306
MS.gene05879.t1	MTR_7g093900	37.740	416	227	2	58	442	206	620	5.98e-99	310
MS.gene05879.t1	MTR_7g093900	27.981	411	251	9	47	421	96	497	2.66e-40	153
MS.gene05879.t1	MTR_7g093900	30.041	243	151	6	54	285	332	566	2.61e-27	115
MS.gene05879.t1	MTR_7g093900	26.962	293	205	6	99	388	44	330	7.67e-23	102
MS.gene05879.t1	MTR_3g005330	36.795	443	244	6	29	436	14	455	4.55e-98	302

Showing 1 to 10 of 1,030 entries

Previous1 2 3 4 5…103Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05879.t1	AT1G77170	58.124	437	181	1	12	446	30	466	0.0	553
MS.gene05879.t1	AT4G21065	39.348	399	237	4	47	443	71	466	1.04e-102	318
MS.gene05879.t1	AT2G02980	37.182	433	267	3	10	441	43	471	1.28e-101	315
MS.gene05879.t1	AT5G66520	37.063	429	235	3	47	444	67	491	1.08e-99	311
MS.gene05879.t1	AT2G20540	39.089	417	220	4	58	442	69	483	1.33e-98	305
MS.gene05879.t1	AT2G20540	27.519	258	177	4	32	286	180	430	1.43e-19	91.7
MS.gene05879.t1	AT5G48910	36.889	450	230	5	41	442	73	516	8.42e-98	307
MS.gene05879.t1	AT1G59720	42.424	396	214	7	59	441	111	505	9.21e-98	306
MS.gene05879.t1	AT2G03880	37.150	428	257	5	15	441	83	499	4.78e-97	304
MS.gene05879.t1	AT2G33760	35.780	436	246	4	39	442	21	454	6.59e-97	303

Showing 1 to 10 of 1,208 entries

Previous1 2 3 4 5…121Next

Find 119 sgRNAs with CRISPR-Local

Find 129 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTGTGGGAGGATGGACT+TGG	0.589643	4.4:+3397263	MS.gene05879:CDS
AAATGTGGATATGGCAGAGT+GGG	0.605655	4.4:+3397674	MS.gene05879:CDS
AAGCCAAATTCAGTAGTATG+GGG	0.598193	4.4:+3397621	MS.gene05879:CDS
AAGCCTTCCTTCTTTCATAA+AGG	0.351074	4.4:-3397805	None:intergenic
AAGCGTTGGTGATTTGTACC+TGG	0.591979	4.4:+3397152	MS.gene05879:CDS
AATGCATGGACATGCAAAGG+AGG	0.639727	4.4:+3397356	MS.gene05879:CDS
AATGTAGCTATCACTGTAAC+TGG	0.253497	4.4:-3396601	None:intergenic
AATTCACTGATTGACATGTA+TGG	0.470452	4.4:+3397240	MS.gene05879:CDS
ACATAAACACCTTCATTCCA+AGG	0.552388	4.4:-3397723	None:intergenic
ACATGTATGGAAAGTGTGGG+AGG	0.677779	4.4:+3397253	MS.gene05879:CDS

Showing 1 to 10 of 119 entries

Previous1 2 3 4 5…12Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ATTAATCTGTATTGCAAAGC+TGG	+	chr4.4:3396940-3396959	MS.gene05879:CDS	30.0%
TCTTGGAATGCTTTAATAAG+TGG	+	chr4.4:3397018-3397037	MS.gene05879:CDS	30.0%
TTTGTTGATATGAAGAGACA+TGG	+	chr4.4:3397081-3397100	MS.gene05879:CDS	30.0%
AAGCCAAATTCAGTAGTATG+GGG	+	chr4.4:3397621-3397640	MS.gene05879:CDS	35.0%
AAGCCTTCCTTCTTTCATAA+AGG	-	chr4.4:3397808-3397827	None:intergenic	35.0%
AATGTAGCTATCACTGTAAC+TGG	-	chr4.4:3396604-3396623	None:intergenic	35.0%
ACATAAACACCTTCATTCCA+AGG	-	chr4.4:3397726-3397745	None:intergenic	35.0%
ATGTAGCTATCACTGTAACT+GGG	-	chr4.4:3396603-3396622	None:intergenic	35.0%
ATTGACATGTATGGAAAGTG+TGG	+	chr4.4:3397249-3397268	MS.gene05879:CDS	35.0%
GAAACATGGAAATGTGGATA+TGG	+	chr4.4:3397665-3397684	MS.gene05879:CDS	35.0%

Showing 1 to 10 of 129 entries

Previous1 2 3 4 5…13Next

Chromosome	Type	Strat	End	Strand	Name
chr4.4	gene	3396526	3397869	3396526	ID=MS.gene05879
chr4.4	mRNA	3396526	3397869	3396526	ID=MS.gene05879.t1;Parent=MS.gene05879
chr4.4	exon	3396526	3397869	3396526	ID=MS.gene05879.t1.exon1;Parent=MS.gene05879.t1
chr4.4	CDS	3396526	3397869	3396526	ID=cds.MS.gene05879.t1;Parent=MS.gene05879.t1

Gene Sequence

>MS.gene05879

ATGTCCCGCTTCTTTCTCACATGTCGTCGTTGTTTCTCTTCCGTTCCCCAACACTCCATTACAAGTGGAAACGACCCAGTTACAGTGATAGCTACATTGTTGTCTAACACTACTCGTATACGCGAGCTGAACCAAATATACGCTCACATTCTCCTAACTCGCTTTCTTGAATCCAACCCTGCTTCTTTCAACTGGAACAATATCATAAGATCTTACACTAGACTTGAATCACCTCAAAATGCGCTTCGTATCTATGTTTCCATGTTGCGTGCCGGGGTTTTACCGGACCATTACACTCTTCCCATTGTTCTCAAAGCTCTGTCACAATCTTTTGCCATTCAGCTTGGAAAACAGGTTCATTCGTCTGGTATAAAGCTTGGACTACAATCCAATGAGTATTGTGAAACTGGGTTTATTAATCTGTATTGCAAAGCTGGCGATTTTGATAGTGCACGTAAGGTGTTCGATGAAAATCCTGAACCAAAGCTTGGTTCTTGGAATGCTTTAATAAGTGGCCTTTCACAAGGTGGACTTGCTATGGATGCTATTGATGTGTTTGTTGATATGAAGAGACATGGATTTGAACCGGATGGCATTACCATGGTTAGTGTCATGTCTGCTTGTGGAAGCGTTGGTGATTTGTACCTGGCACTTCAATTGCATAAATATGTTTTTCAGGCGAAAACTAATGAAAGGACTGTCATTTTGATGTCGAATTCACTGATTGACATGTATGGAAAGTGTGGGAGGATGGACTTGGCTTACGAAGTATTTGCGACGATGGAGGATAGGAATGTGTCATCGTGGACTTCTATGATTGTGGGTTATGCAATGCATGGACATGCAAAGGAGGCACTTGATTGCTTTCAGTGTATGAGGGAGTCGGGTGTGAAGCCTAATTATGTGACTTTTATAGGAGTACTTAGTGCTTGTGTGCACGGAGGGACTGTTCAAGAAGGGAGATTTTACTTTGATATGATGAAGAATGTTTATGGCATAACTCCTCAACTGCAGCATTATGGATGCATGGTGGATTTGCTAGGTCGGGCGGGATTGTTTGACGATGCCAGGAGAATGGTGGAGGAGATGCCTATGAAGCCAAATTCAGTAGTATGGGGGTGTTTGATGGGTGCGTGTGAGAAACATGGAAATGTGGATATGGCAGAGTGGGTAGCTGAGCATTTGCAAGCATTGGAACCTTGGAATGAAGGTGTTTATGTGGTATTGTCAAATATCTATGCCAATAAAGGCTTGTGGAAGGAGGTGGAGAGAATAAGATCCTTTATGAAAGAAGGAAGGCTTGCTAAGGTTCCTGCCTATAGCATCACAACAAATTCAGATTGA

Protein sequence

>MS.gene05879.t1

MSRFFLTCRRCFSSVPQHSITSGNDPVTVIATLLSNTTRIRELNQIYAHILLTRFLESNPASFNWNNIIRSYTRLESPQNALRIYVSMLRAGVLPDHYTLPIVLKALSQSFAIQLGKQVHSSGIKLGLQSNEYCETGFINLYCKAGDFDSARKVFDENPEPKLGSWNALISGLSQGGLAMDAIDVFVDMKRHGFEPDGITMVSVMSACGSVGDLYLALQLHKYVFQAKTNERTVILMSNSLIDMYGKCGRMDLAYEVFATMEDRNVSSWTSMIVGYAMHGHAKEALDCFQCMRESGVKPNYVTFIGVLSACVHGGTVQEGRFYFDMMKNVYGITPQLQHYGCMVDLLGRAGLFDDARRMVEEMPMKPNSVVWGCLMGACEKHGNVDMAEWVAEHLQALEPWNEGVYVVLSNIYANKGLWKEVERIRSFMKEGRLAKVPAYSITTNSD