AlfalfaGEDB | MS.gene062435

M. sativa cultivar XinJiangDaYe / MS.gene062435

KEGG: -
GO: GO:0003674 GO:0005488 GO:0048037
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062435.t1	XP_003621884.1	96.4	307	11	0	1	307	1	307	2.20E-164	588.2

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062435.t1	G7KXT7	96.4	307	11	0	1	307	1	307	1.6e-164	588.2

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049824	MS.gene062435	0.820484	6.69E-53	-1.69E-46
MS.gene049825	MS.gene062435	0.855044	8.22E-62	-1.69E-46
MS.gene049873	MS.gene062435	0.818721	1.69E-52	-1.69E-46
MS.gene050303	MS.gene062435	0.814856	1.24E-51	-1.69E-46
MS.gene053294	MS.gene062435	0.809037	2.31E-50	-1.69E-46
MS.gene054967	MS.gene062435	0.803644	3.16E-49	-1.69E-46
MS.gene055555	MS.gene062435	0.81428	1.67E-51	-1.69E-46
MS.gene055778	MS.gene062435	0.802047	6.75E-49	-1.69E-46
MS.gene055808	MS.gene062435	0.858637	7.19E-63	-1.69E-46
MS.gene056091	MS.gene062435	0.886316	3.80E-72	-1.69E-46

Showing 1 to 10 of 16 entries

Previous1 2Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062435.t1	MTR_7g024560	96.417	307	11	0	1	307	1	307	0.0	615

Showing 1 to 1 of 1 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062435.t1	AT3G04020	49.026	308	150	5	1	306	2	304	2.46e-100	297
MS.gene062435.t1	AT3G04020	46.694	242	124	4	67	306	1	239	5.09e-68	212
MS.gene062435.t1	AT3G04020	46.444	239	123	4	70	306	1	236	3.28e-66	207
MS.gene062435.t1	AT3G04020	48.588	177	87	3	1	175	2	176	3.25e-55	177

Showing 1 to 4 of 4 entries

Previous1Next

Find 71 sgRNAs with CRISPR-Local

Find 290 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGGTTTCAGCCTCTAG+TGG	0.558190	7.3:-75432796	MS.gene062435:CDS
AAACAAAACATAAAAGCACA+AGG	0.660653	7.3:+75433511	None:intergenic
AACAAAACATAAAAGCACAA+GGG	0.697914	7.3:+75433512	None:intergenic
AACACAATCATTGATGAGCG+TGG	0.656484	7.3:-75435971	MS.gene062435:CDS
AACATTCGCTGAGAAATGCA+AGG	0.601558	7.3:-75438057	MS.gene062435:intron
AACTTTCTCTGTGAGCGCCT+TGG	0.466325	7.3:+75434714	None:intergenic
AAGTTTAGTTACACTGTGTC+TGG	0.387940	7.3:-75434655	MS.gene062435:CDS
AATACCAATGGACAGAGCTC+AGG	0.523287	7.3:-75432894	MS.gene062435:CDS
AATACCTTATCTTCATTGAG+AGG	0.547218	7.3:+75435542	None:intergenic
AATATGGCTCCTAGTCGGCC+TGG	0.526725	7.3:+75435923	None:intergenic

Showing 1 to 10 of 71 entries

Previous1 2 3 4 5…8Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAATAAGTAGAGGGTTTGAT+GGG	+	chr7.3:75435539-75435558	None:intergenic	30.0%
AAATATCGAAATACAGTTGG+AGG	+	chr7.3:75435781-75435800	None:intergenic	30.0%
AAATTGTAGAAGAAATGGTG+AGG	+	chr7.3:75436631-75436650	None:intergenic	30.0%
AATACCTTATCTTCATTGAG+AGG	+	chr7.3:75435330-75435349	None:intergenic	30.0%
AGAAAACATGTATATCCTAC+AGG	+	chr7.3:75434998-75435017	None:intergenic	30.0%
AGATCTTGCACATTTATTGA+TGG	-	chr7.3:75437132-75437151	MS.gene062435:intron	30.0%
AGGAGATATTCATACATCTA+AGG	-	chr7.3:75434025-75434044	MS.gene062435:intron	30.0%
AGGAGCCATATTAAAATCAT+TGG	-	chr7.3:75434957-75434976	MS.gene062435:intron	30.0%
ATATTAACATCAAACTGGCA+AGG	-	chr7.3:75432911-75432930	MS.gene062435:CDS	30.0%
ATGAATACTGATATATGGCA+GGG	-	chr7.3:75437726-75437745	MS.gene062435:intron	30.0%

Showing 1 to 10 of 290 entries

Previous1 2 3 4 5…29Next

Chromosome	Type	Strat	End	Strand	Name
chr7.3	gene	75432786	75438105	75432786	ID=MS.gene062435
chr7.3	mRNA	75432786	75438105	75432786	ID=MS.gene062435.t1;Parent=MS.gene062435
chr7.3	exon	75438058	75438105	75438058	ID=MS.gene062435.t1.exon1;Parent=MS.gene062435.t1
chr7.3	CDS	75438058	75438105	75438058	ID=cds.MS.gene062435.t1;Parent=MS.gene062435.t1
chr7.3	exon	75437922	75437983	75437922	ID=MS.gene062435.t1.exon2;Parent=MS.gene062435.t1
chr7.3	CDS	75437922	75437983	75437922	ID=cds.MS.gene062435.t1;Parent=MS.gene062435.t1
chr7.3	exon	75436779	75436869	75436779	ID=MS.gene062435.t1.exon3;Parent=MS.gene062435.t1
chr7.3	CDS	75436779	75436869	75436779	ID=cds.MS.gene062435.t1;Parent=MS.gene062435.t1
chr7.3	exon	75435907	75435993	75435907	ID=MS.gene062435.t1.exon4;Parent=MS.gene062435.t1
chr7.3	CDS	75435907	75435993	75435907	ID=cds.MS.gene062435.t1;Parent=MS.gene062435.t1
chr7.3	exon	75435547	75435600	75435547	ID=MS.gene062435.t1.exon5;Parent=MS.gene062435.t1
chr7.3	CDS	75435547	75435600	75435547	ID=cds.MS.gene062435.t1;Parent=MS.gene062435.t1
chr7.3	exon	75434556	75434737	75434556	ID=MS.gene062435.t1.exon6;Parent=MS.gene062435.t1
chr7.3	CDS	75434556	75434737	75434556	ID=cds.MS.gene062435.t1;Parent=MS.gene062435.t1
chr7.3	exon	75433675	75433757	75433675	ID=MS.gene062435.t1.exon7;Parent=MS.gene062435.t1
chr7.3	CDS	75433675	75433757	75433675	ID=cds.MS.gene062435.t1;Parent=MS.gene062435.t1
chr7.3	exon	75433491	75433591	75433491	ID=MS.gene062435.t1.exon8;Parent=MS.gene062435.t1
chr7.3	CDS	75433491	75433591	75433491	ID=cds.MS.gene062435.t1;Parent=MS.gene062435.t1
chr7.3	exon	75432786	75433001	75432786	ID=MS.gene062435.t1.exon9;Parent=MS.gene062435.t1
chr7.3	CDS	75432786	75433001	75432786	ID=cds.MS.gene062435.t1;Parent=MS.gene062435.t1

Gene Sequence

>MS.gene062435

ATGAAACGCAGCAAAACAACGGTCTTAACATTCGCTGAGAAATGCAAGGTTCTTCCTCCTTCTCTTCTCTTTCAATGAAATTATTCATTTTCTTCAATGTTACATTCATTTCATACATGCAGAATATATTAACATCAAACTGGCAAGGTTCTCTTAATACTATCAAAGCAGATGCTAAAGGAAGGTACCCGTTTTACCCTTTATTTCTTCTGCTTCATAAACCTTAGACTCCCTTATTAAGTACTCATACACACACGGACACGACACTGACACGTCCACACTGTAATTATTTGAGAAAAATGAATGATTTGAATGTAATCACATGTGTCAGTGTCAAGTCGGTGTCTGACATAGACAACGCTGAATACTCATTTGATCAAAGGTGTTGGTGCTACAGATACACTCACACCCTTACTCCCTAGCACAACTTGAAGTTTGTATTAAGTTGTTTTTCTTTTCTTTTTGTTGTTACTTATTATTGAAGTATTGGTTATATCTTGTTGTTGATTAGCTTATGACAGTTAGTTAAAGTTAACTACACTTGGGCCTTGTTTGGATAAACAACTTAAGTTGCTGCTTACAGCATAAGTGCTTGTTATGATAAGTGCTTATATTAGATATTTCTACGATGAAAGTTATAATAAAGTTAAATTGTTTTGGTATAAGCTATAAGTTATTTTCTTGAGCTATATTGGAGAGCTTATGGAAGTAAGATGAAAACAGCTAATGAACATGTTGTAAGCTGCTTTAGGGTTTATGCTTATAAACATGTCATAAGTTGTTTTCATAAATTCTCTCAAATAGTCTCACAAGTTCTTATGCTAGTAGATAAGCTCAAATAAGGAAATCTAAACATGCCCAGGGTTGGTTTTCAGTTAAAATTTGTAACACACTTCAATTTGTTCTTGAGTTGAATACGATCTCCAAACTGTTTCATACACTTTCTCTAGTTCTTTTTTCCTCTTATTTTCTATGATAGTTCAATTCCTTGATACTTATAATAATTTAGTACTCAGAGTGTGATTGTTCTGTTACTCCTTACGACATGTTTGTATTGGGAGTGAGTTTGAAGAAATCACGGTGGCAACTGGCAATATGATTTTGTTGAAGTTCTAAAATGTAGCTTTTGCTAAAATCGTGGTAGTACACTGTTATTTCACCAAACTCACTGTCAATTGACACATGCGCAAAGTATTTTGCTAATGGGTCTTTGTTACTTTTGTATGATTTCAACAGCAAAGGAGATATTCATACATCTAAGGTTAAATACATACTTAGAAGGGGGCAGCCATATCTTTGGGTGCCAGAAAATGATTTGCATAATATGGTATGTTTGTTGTCCTTCCATTTCCTCTCTCTTTTTTTTTTTTTTACAGTTGCTTCTTTTTCATGTCCAATGTGAAGATTATAAGTCTAAAGATAACTCTTAAATGCTAAGTTCAACATGAATTAATCAGTTAGGGTCTCAAGTCTGCTGTACCACTTTTCTAAGGGATTGTACACTTTGGCTCTTGTATAATCTCTCACGGTTTTGTCCTTAGATAAAAGACGTATAAGTGGGTTGAGGATAATCAGTGTTTATAAACTACCCTTAACCTCAACTCTCAATCAATGTGAGACTTTTTGGTGTTATGAAACAGTAACGTATATTGAGGTTAGTTCGTCACTTAAGTATCAGAGAGATAGCTTTTATCTAAGGGTTAGTTAAGAATCTCCTTGAAATTGAGGTTAAAAATCTAGGAGAAATTTAATAATTTGGTTTTGACTTTTTTCCTCCTTTTTGTTAATAATTTTTAGTTTTTTGTGATACTAAGTCACTTTGACTGTGATTACTGATTAGTCTGTCTTCCTCTGCTTAATCTTTTTATCACTGTTTGTGGTAAAAACTAAATGTTCATATCAAGTTTGTCACATTGTAGCACTTAATCAAAAGAGCCAGAAGAAATGTTTAGAACACTACCTTATTGAAGATGACACTTTTTTTGGAGGGTTTTGCCTATGCTAATTTTTATTTTCACTCTTAACCTTAAGAATAATACTATATGTGTTGATAAATCATTTGAGTACTTTTTCCAGTTGCAGGATGACTAGTTTGATTTTTGTTTTATGCAGAACACAATCATTGATGAGCGTGGTTCATTTGCTGTGACCTGTCCATTTCCAGGCCGACTAGGAGCCATATTAAAATCATTGGAAAAGGTTGTGTGTGCCTGTAGGATATACATGTTTTCTTTTCGAAACTAAAATAAAATCATGCAATTTATAATACCTTTGCTCGGTTCTCCACGAAATCACCAGCAACGTCGTTCCTGCGTTCACTATTGTGTTGCGATACACTATTTAGTACAAAATGTTGTCGAATAGCAGCGCTTTAGCACTTGTGTTTCCTAATATGAACAAACCAATTTTTTTTGCTGCGATCTGTGGTTGACGATGCTGTTTCAGATTCTCTTATAATTAGAAGAAATAAAGGTATAAGCTAATTGGTTTATTCACATGCTGCAGTTACCAGCTCGGGTTGCTTTATCTGGGGATGTTCTTCCTCTCAATGAAGATAAGGTATTGCTACAACATCTTTTCATATGCTTGCTTTTTATCATTTCGCTTTCGCTAATATAACTTTACTAAAATAATGTGTTAGACTCTCCATAGCAAAAGAATATGCAAAAAAGTATGTAAACTTCCTGAATATTCTGGAGATCTCAGACTCTTGGTAGTCCTGATTCAAATCCTCACCGAAAGGACTAACTCCCATCAAACCCTCTACTTATTTATATAGCTTGTTTATTTCTTTTAACTTTCTCAGCCTAACTAACAAAATCTACTAACCATCAGATTTATCACATTCCAATTTCACGAGTGTCAATTACTCCCTTTGTCTCGCAATGTAAGTCATTGTAGCAAAAAAAAATGTCCCATTTATGTCGCTTTACAATATCAATGAAGTATTAGTTTTGTTTTTCTTATTACAGCCCTAACTATTAATTACTCTCCTCCAACTGTATTTCGATATTTGAACTTTTATTTTCTGAAAGTTTCGCTGTAGATTTGAAAACTATGGACATGAATTAAATATCTTTATGTGTATGGAGGATACCAGAAAATAGAGTGTATATTATTTTGCATATTTATGTTGTTTCTTAAAACATAAATTAATAGATCTTATACTAAAATGCATAGTATTACTTTCACTTTTATGCTCCATCTTCTTTTTCTAATGTGAGCATTAGAGTCCTACTTTCACTTATACTCCAGCCAAGTTTAATTTAATATTAAGGGTTGTTCATCATAATAATTGCAAGTGACAAATAGAGTATAGTATATATAGACTTGTTCTCGAAATTGATGCTTTGTTGATCTTGGTGTAGGCCAAGGCGCTCACAGAGAAAGTTCATGAAGTCATACGATCTGAGGAAAAAGCATTCAGAAAGTTTAGTTACACTGTGTCTGGAGTACTAAGTTCTAGTGGGAGCAGTACATCGCGAAGTGATAATCTTCAGGAACTATTGGGAGCCACTGAAAAATATTCAGTATATAGATTTAAAACGAGGTAGGAACTTGTAGGTTTAAATCTTTGTTTTGAATTTTTCTGTTTCATAGGTGAATGCAAAGATCGTATCTGGTTCTAGTATCTAGGTTGGCTCTTCCCCCAATCCCGAACACTTGGTTACAGTCCTGGTACAAGTTTAACACGCAAAATTCCATATTGTTATAGAAACACTTTCTCTCTTATACTCGCTATTTTGTTTCCTTCATGTGGTTTAGGTTCGTATACTTCCTATGTTTTTGGTTCTCATTTTATCTTCAACTAATAAACATGAGGCAATATCGATCTATATTTTCCTCACCATTTCTTCTACAATTTTTAAAAACAGATCAACATTTTTCAGAAATACTGATAATGTCAAAATACTGTTTTCATTGTTTTTGAAAATGCATTCTTTTTTCCTAGCTTGACTTCCATCTTCTCTCAATAGCAAGTGTTCCCTACACAAATTTTCCATCTCCTTGTTAGCTATTTCAAATAAACACAAATTTTATTAAATGAAAACCGAAAATGTTTTTAGAAAGTGAACACGCCCTTATGGTTTTATATATTTGTTAAGTTTGTGTACCAATACTTAATTATGACACTTGAGTAATGTTAACCCCGGACCTTGTTCGGTATGCATCTGCTAGTCTGGTTTTACTGTAGTCATTATTTTGGGAGTTCTTTGTGAAATAATGAACTTAGAATTTTCTTTTTGTCCTGCATCCAATGAAGTGTGATCAGGATAACCACTAACTATTAGTAAAATTAGAAAATCTGAAGTGTTTGTTCCATCTAATGTAAGACTTTAATGCTCAGATCTTGCACATTTATTGATGGCCATGGAGGTACTTTTGATGTGGATGTTGAAGATTTAGGAACATCCAAAGCTGATCAATTAGGTGAAGACCTGGTTTTAAATGCATTAGTTCGGTATCTTTTATTTATGCAACAAAATATTGATTTCTCGTTTTTTCTTGTTTAGCTCCATTTTCTGCGAAGTTGATTGATGGGATTAACCAAAGTGAAGCTAGGCGTAGAGCCCTTGTGCTTTTATGTTTTGTTTACATGAACACCAATGCAAAGGTAACTTAATGATCTTGATTATTCTTTACACCCTGATCCTGCAATTGGTTACTTGATGTCTTCTTGATTACAAGTGTGGTTGCAAGATACATTGATCATTCTTAGATAATGGAAAGTTGCATAGCATTTTAGATGCGGGAATATGTGTTACGGATTATTTCAATTGTAGAAGAAGAAAAAAGCATAGATTGTTTATCTTCGTATGGCATGGTCAAGAGATTGTGATGTGTTGAAAATATATTATTAGAATATCATATATGTCCATCCTTCTCTAGATTATGGTAGCTTCTGTAGTATTGCTGGTTTTGTAACATGCTTCTTAGAGATGAATACTGATATATGGCAGGGTAAAGAGTTTGTGTCTCCGCAGTTGCATGCTGATACCTTGTTTTGTCTTAGGACTAACCATATATCAGTTCATTTATTTTGTTTTTCGCTCTCATAATATCTAGTCTTAACAACTAACGAAGCCTGTGGTGTTGTATTAAGGATGCTTATGTAACATCCGTTGATCGCAAGGGATTCGATGTGCTAGCAAAAGTTACTGGTCCTGTTTCAAAGGATGGCGTTGGTCAATACCAATGGACAGAGCTCAGGTTCATGTTCGAGCAAGAGGCAACCGATGTTGAAACATTCTGTCAACATCTAGTTCAAATGGAAGAGGAGGTCATCAAAAGGGTTTCAGCCTCTAGTGGACTAAACTAA

Protein sequence

>MS.gene062435.t1

MKRSKTTVLTFAEKCKNILTSNWQGSLNTIKADAKGSKGDIHTSKVKYILRRGQPYLWVPENDLHNMNTIIDERGSFAVTCPFPGRLGAILKSLEKLPARVALSGDVLPLNEDKAKALTEKVHEVIRSEEKAFRKFSYTVSGVLSSSGSSTSRSDNLQELLGATEKYSVYRFKTRSCTFIDGHGGTFDVDVEDLGTSKADQLAPFSAKLIDGINQSEARRRALVLLCFVYMNTNAKDAYVTSVDRKGFDVLAKVTGPVSKDGVGQYQWTELRFMFEQEATDVETFCQHLVQMEEEVIKRVSASSGLN