AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene05885

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05885.t1 MTR_6g087040 84.325 504 79 0 1 504 1 504 0.0 890
MS.gene05885.t1 MTR_6g088375 84.325 504 79 0 1 504 1 504 0.0 890
MS.gene05885.t1 MTR_8g102860 76.316 494 117 0 13 506 13 506 0.0 794
MS.gene05885.t1 MTR_8g102860 75.551 454 111 0 53 506 1 454 0.0 722
MS.gene05885.t1 MTR_0204s0020 58.859 491 198 3 8 497 3 490 0.0 611
MS.gene05885.t1 MTR_5g094760 57.002 507 213 4 1 505 1 504 0.0 601
MS.gene05885.t1 MTR_0204s0020 58.452 491 197 4 8 497 3 487 0.0 600
MS.gene05885.t1 MTR_7g091690 58.233 498 203 4 1 496 1 495 0.0 597
MS.gene05885.t1 MTR_0204s0040 55.888 501 214 4 2 501 8 502 0.0 593
MS.gene05885.t1 MTR_4g116770 55.888 501 214 4 2 501 204 698 0.0 592
MS.gene05885.t1 MTR_4g116790 55.010 509 222 5 3 510 6 508 0.0 576
MS.gene05885.t1 MTR_5g006070 55.847 496 213 6 18 509 14 507 0.0 570
MS.gene05885.t1 MTR_3g008160 53.909 486 221 3 18 501 15 499 0.0 534
MS.gene05885.t1 MTR_1g038630 53.488 516 227 6 1 508 1 511 0.0 532
MS.gene05885.t1 MTR_5g006070 55.098 461 201 6 53 509 1 459 0.0 524
MS.gene05885.t1 MTR_1g104780 54.455 505 221 7 1 501 1 500 0.0 520
MS.gene05885.t1 MTR_1g104750 50.000 502 244 5 1 499 1 498 1.11e-179 514
MS.gene05885.t1 MTR_5g082540 52.361 487 227 4 18 501 15 499 1.43e-179 514
MS.gene05885.t1 MTR_1g104770 49.901 503 244 6 1 499 1 499 4.05e-179 513
MS.gene05885.t1 MTR_4g091370 54.582 491 218 3 18 504 15 504 1.16e-176 507
MS.gene05885.t1 MTR_0009s0370 50.098 509 248 4 7 510 2 509 2.87e-175 503
MS.gene05885.t1 MTR_3g008170 50.101 493 242 4 21 510 18 509 1.82e-174 501
MS.gene05885.t1 MTR_3g008160 53.437 451 207 3 53 501 1 450 7.60e-172 493
MS.gene05885.t1 MTR_3g023480 50.000 510 245 5 10 512 5 511 9.05e-172 494
MS.gene05885.t1 MTR_5g041550 51.683 505 233 6 1 499 1 500 3.78e-171 493
MS.gene05885.t1 MTR_3g093010 50.484 517 246 6 1 512 1 512 5.86e-170 490
MS.gene05885.t1 MTR_1g038600 50.874 515 224 7 1 508 1 493 8.40e-170 489
MS.gene05885.t1 MTR_3g074410 47.151 509 261 8 1 505 1 505 4.66e-162 469
MS.gene05885.t1 MTR_3g074390 48.479 493 245 8 21 509 23 510 2.72e-161 468
MS.gene05885.t1 MTR_4g090600 51.195 502 235 6 9 505 10 506 1.55e-157 458
MS.gene05885.t1 MTR_3g074270 47.705 501 235 7 1 499 1 476 3.27e-157 456
MS.gene05885.t1 MTR_3g007910 47.348 509 228 7 1 505 1 473 2.69e-156 454
MS.gene05885.t1 MTR_4g116790 55.068 365 158 4 3 366 6 365 4.44e-148 429
MS.gene05885.t1 MTR_3g093060 47.788 452 229 4 53 498 1 451 1.26e-144 423
MS.gene05885.t1 MTR_3g074380 47.967 369 187 5 1 367 1 366 1.13e-110 333
MS.gene05885.t1 MTR_3g074340 45.048 313 166 6 191 499 20 330 2.35e-92 285
MS.gene05885.t1 MTR_3g074370 45.048 313 166 6 191 499 20 330 3.14e-92 285
MS.gene05885.t1 MTR_3g074320 45.048 313 166 6 191 499 20 330 3.62e-92 285
MS.gene05885.t1 MTR_3g074400 36.703 455 223 10 53 480 1 417 3.47e-82 262
MS.gene05885.t1 MTR_6g088450 28.630 489 297 13 8 478 45 499 7.06e-58 200
MS.gene05885.t1 MTR_8g103500 27.423 485 310 10 21 489 13 471 2.24e-54 191
MS.gene05885.t1 MTR_4g072030 28.150 508 313 13 28 510 26 506 4.55e-53 187
MS.gene05885.t1 MTR_3g084110 29.102 512 328 13 10 509 7 495 7.18e-52 184
MS.gene05885.t1 MTR_4g069500 26.096 502 330 9 26 507 29 509 2.89e-51 183
MS.gene05885.t1 MTR_4g069500 27.009 448 307 6 79 507 13 459 3.96e-50 179
MS.gene05885.t1 MTR_7g005910 28.340 494 321 11 25 510 32 500 2.34e-49 177
MS.gene05885.t1 MTR_1g116660 28.425 489 320 12 25 506 34 499 3.39e-49 177
MS.gene05885.t1 MTR_6g018790 31.291 457 282 10 32 485 111 538 3.64e-49 177
MS.gene05885.t1 MTR_7g082270 29.011 455 295 8 32 485 71 498 6.38e-48 173
MS.gene05885.t1 MTR_8g077890 28.600 493 301 12 26 492 18 485 8.00e-48 173
MS.gene05885.t1 MTR_1g116650 28.889 495 307 11 25 511 77 534 1.41e-47 173
MS.gene05885.t1 MTR_7g446340 27.160 486 302 13 25 492 54 505 8.57e-47 171
MS.gene05885.t1 MTR_6g007340 27.160 486 302 13 25 492 54 505 8.57e-47 171
MS.gene05885.t1 MTR_5g075300 27.823 496 310 10 21 492 14 485 8.98e-47 170
MS.gene05885.t1 MTR_3g116240 27.515 487 300 12 26 485 27 487 1.57e-45 167
MS.gene05885.t1 MTR_2g013310 25.996 477 316 12 26 491 52 502 2.79e-44 164
MS.gene05885.t1 MTR_7g082270 29.723 397 252 7 32 428 71 440 1.04e-43 161
MS.gene05885.t1 MTR_4g077740 28.298 470 293 12 34 485 53 496 2.54e-43 160
MS.gene05885.t1 MTR_4g013205 29.188 394 262 7 96 485 88 468 3.58e-43 160
MS.gene05885.t1 MTR_2g013310 27.179 390 270 8 111 491 45 429 6.46e-43 158
MS.gene05885.t1 MTR_5g096000 44.385 187 81 2 1 187 1 164 2.30e-41 150
MS.gene05885.t1 MTR_5g096000 51.938 129 62 0 377 505 176 304 1.48e-33 129
MS.gene05885.t1 MTR_2g049020 29.942 344 215 6 35 371 35 359 4.04e-40 153
MS.gene05885.t1 MTR_1g038620 46.541 159 67 2 206 364 50 190 6.08e-40 143
MS.gene05885.t1 MTR_2g026160 30.814 344 203 8 25 355 26 347 2.98e-39 150
MS.gene05885.t1 MTR_3g074330 51.235 162 68 3 1 155 1 158 3.12e-39 141
MS.gene05885.t1 MTR_3g074360 51.235 162 68 3 1 155 1 158 3.12e-39 141
MS.gene05885.t1 MTR_6g087910 27.665 394 268 7 94 485 104 482 8.09e-39 148
MS.gene05885.t1 MTR_2g048720 31.595 326 198 7 35 355 35 340 9.67e-39 149
MS.gene05885.t1 MTR_3g074310 50.617 162 69 3 1 155 1 158 1.76e-38 139
MS.gene05885.t1 MTR_5g077580 27.353 563 282 18 35 501 35 566 3.67e-38 147
MS.gene05885.t1 MTR_8g077310 25.486 463 312 8 27 485 48 481 1.58e-36 141
MS.gene05885.t1 MTR_7g113970 26.988 415 277 10 86 492 102 498 3.77e-36 140
MS.gene05885.t1 MTR_7g113960 27.340 406 271 9 86 485 67 454 5.14e-36 140
MS.gene05885.t1 MTR_1g022315 27.073 410 285 7 86 490 89 489 9.81e-36 139
MS.gene05885.t1 MTR_5g019870 28.798 441 277 12 81 492 50 482 1.25e-35 139
MS.gene05885.t1 MTR_8g077310 26.650 394 274 8 97 485 1 384 1.54e-35 137
MS.gene05885.t1 MTR_8g077300 27.340 406 278 7 86 485 79 473 2.24e-35 138
MS.gene05885.t1 MTR_1g022315 27.436 390 269 7 106 490 10 390 3.41e-35 136
MS.gene05885.t1 MTR_5g020270 25.845 414 284 8 86 490 90 489 6.87e-35 137
MS.gene05885.t1 MTR_3g080240 26.329 395 274 10 96 485 145 527 1.44e-34 137
MS.gene05885.t1 MTR_5g020270 26.478 389 263 8 111 490 15 389 1.47e-34 134
MS.gene05885.t1 MTR_7g094450 26.366 421 288 6 67 485 69 469 2.81e-34 135
MS.gene05885.t1 MTR_4g118610 29.782 413 255 12 86 485 92 482 5.20e-33 131
MS.gene05885.t1 MTR_4g064820 29.915 351 212 8 34 366 104 438 1.36e-32 130
MS.gene05885.t1 MTR_2g020710 27.027 407 272 10 87 485 1 390 6.25e-31 124
MS.gene05885.t1 MTR_2g020710 26.961 408 273 10 86 485 89 479 7.86e-31 125
MS.gene05885.t1 MTR_0064s0040 42.029 138 68 1 18 155 16 141 2.49e-30 116
MS.gene05885.t1 MTR_5g020270 25.183 409 272 9 86 490 90 468 1.21e-29 121
MS.gene05885.t1 MTR_2g026140 27.221 349 207 9 36 371 34 348 1.67e-29 122
MS.gene05885.t1 MTR_7g094110 26.353 425 283 9 67 485 71 471 1.81e-29 121
MS.gene05885.t1 MTR_4g069500 24.611 321 223 5 205 507 1 320 4.52e-29 117
MS.gene05885.t1 MTR_7g113960 29.091 275 177 6 86 355 67 328 2.02e-25 108
MS.gene05885.t1 MTR_8g077310 26.962 293 199 6 86 376 87 366 2.95e-25 108
MS.gene05885.t1 MTR_3g116060 35.057 174 111 2 91 263 50 222 5.08e-24 106
MS.gene05885.t1 MTR_7g113970 28.179 291 186 9 86 368 102 377 1.09e-23 103
MS.gene05885.t1 MTR_7g094110 24.764 424 271 9 67 485 71 451 9.82e-23 101
MS.gene05885.t1 MTR_5g024740 28.571 238 149 5 27 262 5 223 3.03e-22 100
MS.gene05885.t1 MTR_1g114280 36.364 154 77 3 350 501 21 155 3.37e-22 93.6
MS.gene05885.t1 MTR_3g118530 34.503 171 111 1 94 263 54 224 1.39e-21 99.0
MS.gene05885.t1 MTR_3g118530 34.503 171 111 1 94 263 54 224 1.82e-21 98.6
MS.gene05885.t1 MTR_8g073100 27.572 243 160 5 79 306 39 280 7.56e-21 96.7
MS.gene05885.t1 MTR_4g118610 28.779 344 210 12 86 416 92 413 1.00e-20 95.1
MS.gene05885.t1 MTR_5g044910 29.379 177 124 1 87 262 47 223 1.45e-20 95.9
MS.gene05885.t1 MTR_2g020710 25.740 338 226 10 86 415 89 409 2.59e-20 93.6
MS.gene05885.t1 MTR_2g020710 25.664 339 227 10 86 416 89 410 3.07e-20 93.6
MS.gene05885.t1 MTR_2g020710 27.018 285 187 8 86 363 89 359 1.27e-19 90.9
MS.gene05885.t1 MTR_5g082760 23.171 410 261 13 90 480 134 508 9.28e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05885.t1 AT1G77210 73.016 504 136 0 1 504 1 504 0.0 777
MS.gene05885.t1 AT1G77210 73.016 504 136 0 1 504 1 504 0.0 777
MS.gene05885.t1 AT4G02050 59.649 513 201 5 1 510 1 510 0.0 624
MS.gene05885.t1 AT4G02050 59.649 513 201 5 1 510 1 510 0.0 624
MS.gene05885.t1 AT5G26340 55.750 513 219 6 1 509 1 509 0.0 572
MS.gene05885.t1 AT3G19940 51.717 495 231 3 22 509 21 514 0.0 548
MS.gene05885.t1 AT1G50310 53.002 483 223 3 22 501 21 502 0.0 538
MS.gene05885.t1 AT1G11260 52.751 527 227 7 1 511 1 521 0.0 538
MS.gene05885.t1 AT1G77210 72.000 350 98 0 155 504 6 355 0.0 534
MS.gene05885.t1 AT3G19930 52.277 505 231 6 1 501 1 499 0.0 524
MS.gene05885.t1 AT3G19930 52.277 505 231 6 1 501 1 499 0.0 524
MS.gene05885.t1 AT5G23270 52.259 509 228 7 1 501 1 502 0.0 520
MS.gene05885.t1 AT4G21480 52.165 485 227 4 18 499 15 497 3.75e-174 500
MS.gene05885.t1 AT5G26250 49.901 503 244 5 10 510 9 505 5.84e-174 500
MS.gene05885.t1 AT3G05960 50.103 487 240 3 14 499 9 493 1.00e-170 491
MS.gene05885.t1 AT5G61520 47.791 498 251 5 21 511 19 514 6.43e-158 459
MS.gene05885.t1 AT1G34580 45.562 507 260 9 1 498 1 500 1.02e-149 438
MS.gene05885.t1 AT1G07340 46.612 487 254 6 18 501 15 498 3.96e-148 434
MS.gene05885.t1 AT5G61520 47.109 467 238 5 52 511 2 466 2.98e-143 420
MS.gene05885.t1 AT1G34580 45.275 455 235 8 53 498 1 450 1.63e-133 395
MS.gene05885.t1 AT1G50310 51.429 350 166 3 155 501 11 359 1.91e-127 376
MS.gene05885.t1 AT4G36670 30.137 511 300 13 26 512 16 493 4.69e-58 200
MS.gene05885.t1 AT2G18480 30.655 473 280 11 40 489 36 483 1.14e-57 200
MS.gene05885.t1 AT3G18830 28.429 503 317 11 26 506 35 516 1.34e-57 200
MS.gene05885.t1 AT2G16130 29.448 489 302 10 26 492 25 492 4.13e-56 196
MS.gene05885.t1 AT2G16120 28.600 507 315 11 26 510 25 506 2.04e-55 194
MS.gene05885.t1 AT5G17010 30.550 491 299 12 12 485 33 498 7.31e-48 173
MS.gene05885.t1 AT5G17010 30.550 491 299 12 12 485 33 498 7.31e-48 173
MS.gene05885.t1 AT5G17010 30.550 491 299 12 12 485 33 498 7.31e-48 173
MS.gene05885.t1 AT5G16150 30.297 472 297 9 19 487 98 540 1.10e-46 171
MS.gene05885.t1 AT5G16150 30.297 472 297 9 19 487 98 540 1.10e-46 171
MS.gene05885.t1 AT5G16150 30.297 472 297 9 19 487 98 540 1.10e-46 171
MS.gene05885.t1 AT5G59250 28.937 508 309 13 3 485 72 552 1.14e-46 171
MS.gene05885.t1 AT2G43330 28.838 482 308 11 25 498 30 484 1.35e-45 167
MS.gene05885.t1 AT3G03090 29.060 468 292 10 34 485 55 498 1.38e-43 161
MS.gene05885.t1 AT2G20780 27.168 519 320 16 11 511 40 518 1.86e-43 161
MS.gene05885.t1 AT2G20780 28.381 451 285 15 79 511 30 460 1.95e-42 157
MS.gene05885.t1 AT2G35740 26.821 563 288 16 25 490 25 560 3.46e-42 159
MS.gene05885.t1 AT4G16480 32.055 365 211 9 23 373 24 365 6.93e-42 158
MS.gene05885.t1 AT4G16480 32.055 365 211 9 23 373 24 365 6.93e-42 158
MS.gene05885.t1 AT4G16480 32.055 365 211 9 23 373 24 365 6.93e-42 158
MS.gene05885.t1 AT1G08930 28.571 427 255 11 86 492 98 494 8.85e-41 154
MS.gene05885.t1 AT1G08930 28.571 427 255 11 86 492 98 494 8.85e-41 154
MS.gene05885.t1 AT1G67300 28.852 357 236 8 96 448 103 445 6.37e-40 150
MS.gene05885.t1 AT1G67300 28.852 357 236 8 96 448 103 445 6.37e-40 150
MS.gene05885.t1 AT1G67300 28.141 398 264 8 96 485 103 486 6.88e-40 151
MS.gene05885.t1 AT1G08900 29.484 407 263 9 86 485 23 412 2.92e-39 148
MS.gene05885.t1 AT3G05400 28.434 415 269 11 86 491 66 461 3.96e-39 148
MS.gene05885.t1 AT1G08900 29.484 407 263 9 86 485 57 446 5.33e-39 148
MS.gene05885.t1 AT1G08900 29.484 407 263 9 86 485 65 454 5.45e-39 148
MS.gene05885.t1 AT1G08900 29.484 407 263 9 86 485 65 454 5.45e-39 148
MS.gene05885.t1 AT1G67300 28.392 398 262 9 96 485 103 485 1.09e-38 147
MS.gene05885.t1 AT1G67300 28.392 398 262 9 96 485 103 485 1.09e-38 147
MS.gene05885.t1 AT1G67300 28.869 336 223 7 96 427 103 426 2.15e-38 145
MS.gene05885.t1 AT1G67300 28.869 336 223 7 96 427 103 426 2.15e-38 145
MS.gene05885.t1 AT1G79820 27.250 400 280 5 87 485 97 486 2.55e-38 147
MS.gene05885.t1 AT1G79820 27.250 400 280 5 87 485 97 486 2.55e-38 147
MS.gene05885.t1 AT3G05155 27.423 423 284 10 71 485 47 454 2.79e-38 146
MS.gene05885.t1 AT1G54730 27.093 454 298 8 34 485 39 461 3.67e-38 145
MS.gene05885.t1 AT3G05400 29.847 392 237 13 119 491 69 441 8.03e-38 144
MS.gene05885.t1 AT1G30220 28.746 327 209 7 35 355 37 345 1.29e-37 146
MS.gene05885.t1 AT1G08890 29.310 406 265 9 86 485 67 456 1.35e-37 144
MS.gene05885.t1 AT5G27360 27.061 473 303 9 19 485 28 464 3.61e-37 143
MS.gene05885.t1 AT1G79820 27.507 349 243 4 87 435 97 435 4.94e-37 142
MS.gene05885.t1 AT5G27350 28.041 485 283 12 19 485 24 460 6.60e-37 142
MS.gene05885.t1 AT5G27360 27.521 476 297 10 19 485 76 512 8.64e-37 143
MS.gene05885.t1 AT1G05030 29.426 401 260 12 95 487 78 463 5.33e-36 140
MS.gene05885.t1 AT1G05030 28.475 446 296 12 50 487 85 515 5.82e-36 140
MS.gene05885.t1 AT2G48020 26.601 406 276 6 86 485 68 457 1.57e-35 138
MS.gene05885.t1 AT2G48020 26.601 406 276 6 86 485 68 457 1.57e-35 138
MS.gene05885.t1 AT1G75220 27.007 411 283 7 86 490 88 487 3.09e-35 138
MS.gene05885.t1 AT4G04760 27.966 472 303 10 26 492 31 470 7.43e-35 137
MS.gene05885.t1 AT4G04760 28.605 430 282 8 68 492 2 411 1.16e-34 135
MS.gene05885.t1 AT4G04750 28.467 411 274 8 86 492 80 474 2.90e-34 135
MS.gene05885.t1 AT4G04750 28.467 411 274 8 86 492 80 474 2.90e-34 135
MS.gene05885.t1 AT4G04750 28.467 411 274 8 86 492 124 518 2.99e-34 135
MS.gene05885.t1 AT5G27360 29.132 357 231 8 135 485 20 360 4.58e-34 132
MS.gene05885.t1 AT5G27360 29.132 357 231 8 135 485 20 360 4.58e-34 132
MS.gene05885.t1 AT5G18840 27.792 403 276 7 86 485 84 474 1.69e-33 133
MS.gene05885.t1 AT1G54730 26.585 410 268 8 34 441 39 417 2.39e-33 132
MS.gene05885.t1 AT3G05150 27.696 408 270 9 86 485 75 465 2.88e-33 132
MS.gene05885.t1 AT3G05150 27.696 408 270 9 86 485 75 465 3.03e-33 132
MS.gene05885.t1 AT3G05150 27.696 408 270 9 86 485 75 465 3.03e-33 132
MS.gene05885.t1 AT1G19450 27.251 411 282 7 86 490 89 488 3.41e-33 132
MS.gene05885.t1 AT3G05160 27.907 430 269 12 73 485 45 450 5.31e-33 131
MS.gene05885.t1 AT1G54730 26.652 454 279 9 34 485 39 440 6.23e-33 130
MS.gene05885.t1 AT3G05165 26.555 418 290 8 73 485 54 459 8.49e-33 130
MS.gene05885.t1 AT3G05165 26.555 418 290 8 73 485 54 459 8.49e-33 130
MS.gene05885.t1 AT3G05165 26.555 418 290 8 73 485 54 459 8.49e-33 130
MS.gene05885.t1 AT1G08920 26.456 412 269 10 86 485 72 461 1.10e-32 130
MS.gene05885.t1 AT3G05160 27.913 412 259 11 88 485 14 401 1.48e-32 129
MS.gene05885.t1 AT3G05160 27.913 412 259 11 88 485 14 401 1.48e-32 129
MS.gene05885.t1 AT1G08920 26.014 419 269 10 86 485 72 468 1.28e-31 127
MS.gene05885.t1 AT1G08900 28.729 362 234 9 86 440 65 409 1.49e-31 126
MS.gene05885.t1 AT4G04760 27.893 484 283 13 26 491 31 466 8.23e-30 122
MS.gene05885.t1 AT1G08920 26.087 368 238 10 86 441 72 417 4.00e-28 117
MS.gene05885.t1 AT1G54730 26.098 410 249 9 34 441 39 396 4.41e-28 116
MS.gene05885.t1 AT3G05165 26.519 362 249 8 73 429 54 403 1.75e-27 115
MS.gene05885.t1 AT1G54730 26.234 385 251 8 34 416 39 392 1.95e-27 114
MS.gene05885.t1 AT1G54730 26.234 385 251 8 34 416 39 392 1.95e-27 114
MS.gene05885.t1 AT3G05165 26.519 362 249 8 73 429 54 403 2.10e-27 115
MS.gene05885.t1 AT3G05165 26.519 362 249 8 73 429 54 403 2.10e-27 115
MS.gene05885.t1 AT3G51490 30.252 238 147 5 27 263 5 224 3.54e-26 113
MS.gene05885.t1 AT3G51490 30.252 238 147 5 27 263 5 224 3.92e-26 113
MS.gene05885.t1 AT1G54730 27.469 324 204 7 34 355 39 333 5.17e-26 109
MS.gene05885.t1 AT1G79820 25.000 400 241 6 87 485 97 438 7.08e-26 110
MS.gene05885.t1 AT3G51490 35.057 174 111 2 91 263 2 174 8.57e-26 112
MS.gene05885.t1 AT3G20460 26.634 413 267 11 86 485 93 482 9.81e-26 110
MS.gene05885.t1 AT5G17010 26.598 485 266 13 12 485 30 435 3.06e-25 108
MS.gene05885.t1 AT5G27360 25.908 413 258 10 19 422 28 401 1.14e-24 107
MS.gene05885.t1 AT3G05155 26.838 272 184 7 86 355 67 325 3.98e-24 103
MS.gene05885.t1 AT1G54730 26.101 318 204 6 32 348 38 325 1.12e-23 102
MS.gene05885.t1 AT1G54730 26.101 318 204 6 32 348 38 325 1.12e-23 102
MS.gene05885.t1 AT4G35300 35.632 174 110 2 91 263 52 224 2.28e-23 104
MS.gene05885.t1 AT4G35300 35.632 174 110 2 91 263 52 224 2.28e-23 104
MS.gene05885.t1 AT4G35300 35.632 174 110 2 91 263 52 224 2.28e-23 104
MS.gene05885.t1 AT4G35300 35.632 174 110 2 91 263 52 224 2.28e-23 104
MS.gene05885.t1 AT4G35300 35.632 174 110 2 91 263 52 224 2.28e-23 104
MS.gene05885.t1 AT4G35300 35.632 174 110 2 91 263 52 224 2.28e-23 104
MS.gene05885.t1 AT4G35300 35.632 174 110 2 91 263 52 224 2.28e-23 104
MS.gene05885.t1 AT4G35300 35.632 174 110 2 91 263 52 224 2.49e-23 104
MS.gene05885.t1 AT4G35300 35.632 174 110 2 91 263 52 224 2.49e-23 104
MS.gene05885.t1 AT4G35300 35.632 174 110 2 91 263 52 224 2.49e-23 104
MS.gene05885.t1 AT2G48020 26.552 290 192 6 86 368 68 343 1.92e-22 99.8
MS.gene05885.t1 AT1G54730 25.714 385 232 9 34 416 39 371 5.39e-22 98.6
MS.gene05885.t1 AT2G48020 26.812 276 182 5 86 355 68 329 1.62e-21 96.3
MS.gene05885.t1 AT1G79820 25.691 362 206 7 127 485 75 376 1.51e-20 94.0
MS.gene05885.t1 AT1G20840 31.609 174 117 2 91 263 50 222 1.33e-19 92.8
MS.gene05885.t1 AT1G20840 31.609 174 117 2 91 263 50 222 1.33e-19 92.8

Find 103 sgRNAs with CRISPR-Local

Find 159 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAACTTGTTTGGGAATTT+TGG 0.137414 4.4:+3323999 MS.gene05885:CDS
GGATATGATCTTGGTGTTTC+AGG 0.160402 4.4:+3323285 MS.gene05885:CDS
GTAAGAAGATTCCATATTTA+AGG 0.160996 4.4:-3325026 None:intergenic
AACATTTATATGTTGATTAT+TGG 0.183002 4.4:+3323763 MS.gene05885:CDS
ATGGGAACTTGCTTTGTTTC+CGG 0.216465 4.4:-3325099 None:intergenic
CCAGCCATTGTTATGTTTAT+TGG 0.229033 4.4:+3324099 MS.gene05885:CDS
CTTTCAACTAACAACTTGTT+TGG 0.236475 4.4:+3323990 MS.gene05885:CDS
GCTCTTGGTGGCTCTCTCTT+TGG 0.250070 4.4:+3323264 MS.gene05885:CDS
ATTATTGGTCGTATCCTTCT+TGG 0.256145 4.4:+3323778 MS.gene05885:CDS
AATAGACCACAATTTGTAAT+TGG 0.260406 4.4:+3324306 MS.gene05885:CDS
GGTAGCTGCAGCAATTGTTT+TGG 0.266994 4.4:+3324771 MS.gene05885:intron
ATCCTTCTTGGCGTTGGAAT+TGG 0.286559 4.4:+3323790 MS.gene05885:CDS
GCAGCTGATCTTATCTCTAA+TGG 0.287553 4.4:-3324928 None:intergenic
AGACATTTCTGACAGATATA+AGG 0.298674 4.4:-3323935 None:intergenic
AATATGGCAGGTGGAGGATT+TGG 0.298867 4.4:+3323162 None:intergenic
TTTCATATTCTTTCTATTGC+CGG 0.305191 4.4:+3325080 MS.gene05885:CDS
TCACTCTGCCACCTTAAATA+TGG 0.307877 4.4:+3325015 MS.gene05885:CDS
GGAAGAGGCAAGAAAGGTTT+TGG 0.315780 4.4:+3324173 MS.gene05885:CDS
TGTTGAGAGAAGCAGCATTT+AGG 0.323015 4.4:-3323744 None:intergenic
TGTTTCCTCTCATACACATT+TGG 0.323425 4.4:-3323544 None:intergenic
TCTTGCATTGTTGGTGCTCT+TGG 0.323511 4.4:+3323249 MS.gene05885:CDS
CTTTATGAATACAAGATTAC+AGG 0.324011 4.4:+3323213 MS.gene05885:CDS
TGCAGGTGGAGTTACTTCTA+TGG 0.329077 4.4:+3323498 MS.gene05885:intron
TCTTCGAGAACCATTGGTTT+TGG 0.329646 4.4:+3325139 MS.gene05885:CDS
CTTGGCGTTGGAATTGGATT+TGG 0.338067 4.4:+3323796 MS.gene05885:CDS
TTTCTGTTTGTGTTGGGATT+TGG 0.344051 4.4:+3324859 MS.gene05885:CDS
TCTCTCTTTGGATATGATCT+TGG 0.345384 4.4:+3323276 MS.gene05885:CDS
GGTTCCATTAGCTTCTTCAT+TGG 0.349974 4.4:+3323715 MS.gene05885:CDS
CTCAAAAGAAGGTTCTGAAA+TGG 0.355481 4.4:-3324279 None:intergenic
CAGATCCAAATCCAAGAGTT+TGG 0.359984 4.4:-3324401 None:intergenic
TCTTGTGGAACAAGGCAAAA+TGG 0.361228 4.4:+3324152 MS.gene05885:CDS
GTTCTGAAATGGATTCTTGA+TGG 0.368445 4.4:-3324268 None:intergenic
CCTTGTTCCACAAGACTGTT+TGG 0.378394 4.4:-3324144 None:intergenic
TTTCAACTAACAACTTGTTT+GGG 0.390416 4.4:+3323991 MS.gene05885:CDS
GAGAAGATAAATCTCTTCAA+TGG 0.392608 4.4:-3325118 None:intergenic
GTTTCCTCTCATACACATTT+GGG 0.401650 4.4:-3323543 None:intergenic
CCAGTCAGTTGTTGGAATGC+AGG 0.407633 4.4:-3324342 None:intergenic
CAGCTGATCTTATCTCTAAT+GGG 0.408524 4.4:-3324927 None:intergenic
GTCTATTCTTTCTCAAAAGA+AGG 0.410688 4.4:-3324290 None:intergenic
TGTTGGGATTTGGAAGATCA+TGG 0.417917 4.4:+3324869 MS.gene05885:CDS
ACAAGACTGTTTGGTGTCTC+AGG 0.421620 4.4:-3324135 None:intergenic
GCCATTGTTATGTTTATTGG+TGG 0.426591 4.4:+3324102 MS.gene05885:CDS
TGCATTGTTGGTGCTCTTGG+TGG 0.427952 4.4:+3323252 MS.gene05885:CDS
GGAAGATCATGGGGACCCTT+AGG 0.430859 4.4:+3324880 MS.gene05885:CDS
ACAATTTGTAATTGGTGCAT+TGG 0.443499 4.4:+3324314 MS.gene05885:CDS
GACATTTCTGACAGATATAA+GGG 0.447933 4.4:-3323934 None:intergenic
TCAAATTCAGCATCAACATT+AGG 0.452348 4.4:-3324213 None:intergenic
CCAATAAACATAACAATGGC+TGG 0.453467 4.4:-3324099 None:intergenic
AGTTGTTTCCAGTCAGTTGT+TGG 0.455532 4.4:-3324350 None:intergenic
TTGGCTCTTGGGTTTGGTGA+TGG 0.456861 4.4:+3324790 MS.gene05885:CDS
AATGGAACCAACAACAATAC+TGG 0.458027 4.4:-3323701 None:intergenic
ATCTTCTCTTCGAGAACCAT+TGG 0.465257 4.4:+3325133 MS.gene05885:CDS
ATGGGGACCCTTAGGATGGT+TGG 0.470449 4.4:+3324888 MS.gene05885:CDS
GTGATGGTGGAAATCTCAAA+AGG 0.475636 4.4:+3323184 MS.gene05885:CDS
GGTGGAGGATTTGGTGATGG+TGG 0.478295 4.4:+3323171 MS.gene05885:CDS
CAAATCCAAGAGTTTGGAAA+AGG 0.479549 4.4:-3324395 None:intergenic
AGAAGATAAATCTCTTCAAT+GGG 0.487469 4.4:-3325117 None:intergenic
GATGGCAAACAATTATCATT+TGG 0.489457 4.4:+3324808 MS.gene05885:CDS
TGGGGATGGAGATTATCTCT+TGG 0.491578 4.4:+3324063 MS.gene05885:CDS
AGGAGAGCCAGTATTGTTGT+TGG 0.495148 4.4:+3323694 MS.gene05885:CDS
CAAAATGGAAGAGGCAAGAA+AGG 0.497536 4.4:+3324167 MS.gene05885:CDS
ACTTGGAACCAACCATCCTA+AGG 0.498385 4.4:-3324896 None:intergenic
GGTCGTATCCTTCTTGGCGT+TGG 0.503190 4.4:+3323784 MS.gene05885:CDS
AGCTCCAATGAAGAAGCTAA+TGG 0.508387 4.4:-3323719 None:intergenic
TCTAATGGGAAAAGCTCACT+TGG 0.515398 4.4:-3324913 None:intergenic
CGACCGAGCAAATTCATCCA+TGG 0.518915 4.4:+3324043 MS.gene05885:CDS
AGCAAATTCATCCATGGGGA+TGG 0.524714 4.4:+3324049 MS.gene05885:CDS
GACCGAGCAAATTCATCCAT+GGG 0.526464 4.4:+3324044 MS.gene05885:CDS
TGAGAGGAAACATGCACACT+TGG 0.539485 4.4:+3323555 MS.gene05885:CDS
TGGAAGAGATATGTAACAGA+TGG 0.539887 4.4:+3325159 MS.gene05885:CDS
GCAGGTGGAGGATTTGGTGA+TGG 0.542926 4.4:+3323168 MS.gene05885:CDS
TCCCCATGGATGAATTTGCT+CGG 0.552523 4.4:-3324046 None:intergenic
CCAAGAGTTTGGAAAAGGAC+AGG 0.554540 4.4:-3324390 None:intergenic
CCTGCATTCCAACAACTGAC+TGG 0.555304 4.4:+3324342 MS.gene05885:CDS
TGCTGAAATGTTCTTGTGCA+TGG 0.555889 4.4:+3324536 MS.gene05885:CDS
GTTGGGATTTGGAAGATCAT+GGG 0.557591 4.4:+3324870 MS.gene05885:CDS
TTTATGTTGACAAGTTTGGT+AGG 0.561260 4.4:+3324490 MS.gene05885:CDS
CATATCTCTTCCAAAACCAA+TGG 0.563898 4.4:-3325149 None:intergenic
ATCCAATTCCAACGCCAAGA+AGG 0.564783 4.4:-3323792 None:intergenic
CCAAACAGTCTTGTGGAACA+AGG 0.569116 4.4:+3324144 MS.gene05885:CDS
AATGCACCAATTACAAATTG+TGG 0.579575 4.4:-3324312 None:intergenic
GGAACAAGGCAAAATGGAAG+AGG 0.584145 4.4:+3324158 MS.gene05885:CDS
AAGGAAGAATTGTGCAACAA+TGG 0.584788 4.4:-3324989 None:intergenic
TCTTCCCAAATGTGTATGAG+AGG 0.590383 4.4:+3323539 MS.gene05885:CDS
GACAGGTGCATAGAAGAGGA+TGG 0.591217 4.4:-3324373 None:intergenic
AGAAGATTCCATATTTAAGG+TGG 0.599343 4.4:-3325023 None:intergenic
TGGAATTGGATTTGGTAACC+AGG 0.602717 4.4:+3323804 MS.gene05885:CDS
GATCATGGGGACCCTTAGGA+TGG 0.603621 4.4:+3324884 MS.gene05885:CDS
AAAGGACAGGTGCATAGAAG+AGG 0.607711 4.4:-3324377 None:intergenic
TGATGGTGGAAATCTCAAAA+GGG 0.610629 4.4:+3323185 MS.gene05885:CDS
GGCAGCAAAGTATAGAGATG+AGG 0.611582 4.4:-3323626 None:intergenic
ACCACCAATAAACATAACAA+TGG 0.611653 4.4:-3324103 None:intergenic
TGAGACACCAAACAGTCTTG+TGG 0.611935 4.4:+3324137 MS.gene05885:CDS
TTGGGATTTGGAAGATCATG+GGG 0.614895 4.4:+3324871 MS.gene05885:CDS
AAGTTGTTAGTTGAAAGAGT+TGG 0.626985 4.4:-3323984 None:intergenic
CTTGGAACCAACCATCCTAA+GGG 0.630263 4.4:-3324895 None:intergenic
TTTATGAATACAAGATTACA+GGG 0.630488 4.4:+3323214 MS.gene05885:CDS
AGAGATAATCTCCATCCCCA+TGG 0.639595 4.4:-3324060 None:intergenic
ATGTCTCCTGCAAAAGTGAG+AGG 0.640100 4.4:+3323952 MS.gene05885:CDS
TAAGGTGGCAGAGTGATACA+AGG 0.640798 4.4:-3325008 None:intergenic
ATAAAACATTGAGATCAAAG+TGG 0.656717 4.4:-3324472 None:intergenic
ATCAGCTGCACAAAGTGTTG+TGG 0.674434 4.4:+3324942 MS.gene05885:CDS
ACCGAGCAAATTCATCCATG+GGG 0.697187 4.4:+3324045 MS.gene05885:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAAGAAGAAAAAAAAGA+TGG - chr4.4:3324573-3324592 None:intergenic 15.0%
!!! AACATTTATATGTTGATTAT+TGG + chr4.4:3323763-3323782 MS.gene05885:CDS 15.0%
!!! TTTTGAAACATTATTTAAGT+AGG - chr4.4:3324600-3324619 None:intergenic 15.0%
!! AGAAAATCCATATTTGTTTA+AGG - chr4.4:3323418-3323437 None:intergenic 20.0%
!! CTTAAATAATGTTTCAAAAC+TGG + chr4.4:3324601-3324620 MS.gene05885:intron 20.0%
!! TTTATGAATACAAGATTACA+GGG + chr4.4:3323214-3323233 MS.gene05885:CDS 20.0%
!!! ACTTCTTGTTGTTATTATTT+AGG + chr4.4:3323906-3323925 MS.gene05885:intron 20.0%
!!! GGTTGAAATATATTTTTTCA+AGG + chr4.4:3324695-3324714 MS.gene05885:intron 20.0%
!!! GTTATGTTTGGTAATTTATT+AGG - chr4.4:3323364-3323383 None:intergenic 20.0%
!!! TGAAATATATTTTTTCAAGG+CGG + chr4.4:3324698-3324717 MS.gene05885:intron 20.0%
! AAACATAACATACCAATGTT+TGG + chr4.4:3323375-3323394 MS.gene05885:intron 25.0%
! AAACATTGGTATGTTATGTT+TGG - chr4.4:3323376-3323395 None:intergenic 25.0%
! AATAGACCACAATTTGTAAT+TGG + chr4.4:3324306-3324325 MS.gene05885:CDS 25.0%
! AATTAATTGATTATCCTTGC+AGG + chr4.4:3323481-3323500 MS.gene05885:intron 25.0%
! AGAAGATAAATCTCTTCAAT+GGG - chr4.4:3325120-3325139 None:intergenic 25.0%
! AGGATAATCAATTAATTGTC+AGG - chr4.4:3323478-3323497 None:intergenic 25.0%
! ATAAAACATTGAGATCAAAG+TGG - chr4.4:3324475-3324494 None:intergenic 25.0%
! CTTTATGAATACAAGATTAC+AGG + chr4.4:3323213-3323232 MS.gene05885:CDS 25.0%
! GGATAATCAATTAATTGTCA+GGG - chr4.4:3323477-3323496 None:intergenic 25.0%
! GTAAGAAGATTCCATATTTA+AGG - chr4.4:3325029-3325048 None:intergenic 25.0%
! GTCTTCACTCAAATTTAATT+GGG - chr4.4:3323444-3323463 None:intergenic 25.0%
! TTTCATATTCTTTCTATTGC+CGG + chr4.4:3325080-3325099 MS.gene05885:CDS 25.0%
!! ATGTTTTATGTTGACAAGTT+TGG + chr4.4:3324486-3324505 MS.gene05885:CDS 25.0%
!! TTTCAACTAACAACTTGTTT+GGG + chr4.4:3323991-3324010 MS.gene05885:CDS 25.0%
!!! GAAATATATTTTTTCAAGGC+GGG + chr4.4:3324699-3324718 MS.gene05885:intron 25.0%
AAGTTGTTAGTTGAAAGAGT+TGG - chr4.4:3323987-3324006 None:intergenic 30.0%
AATGCACCAATTACAAATTG+TGG - chr4.4:3324315-3324334 None:intergenic 30.0%
ACAATTTGTAATTGGTGCAT+TGG + chr4.4:3324314-3324333 MS.gene05885:CDS 30.0%
ACCACCAATAAACATAACAA+TGG - chr4.4:3324106-3324125 None:intergenic 30.0%
AGAAGATTCCATATTTAAGG+TGG - chr4.4:3325026-3325045 None:intergenic 30.0%
AGACATTTCTGACAGATATA+AGG - chr4.4:3323938-3323957 None:intergenic 30.0%
CCATAACAAAAAACAAAGGT+AGG + chr4.4:3323674-3323693 MS.gene05885:CDS 30.0%
GACATTTCTGACAGATATAA+GGG - chr4.4:3323937-3323956 None:intergenic 30.0%
GAGAAGATAAATCTCTTCAA+TGG - chr4.4:3325121-3325140 None:intergenic 30.0%
GATGGCAAACAATTATCATT+TGG + chr4.4:3324808-3324827 MS.gene05885:CDS 30.0%
GGTCTTCACTCAAATTTAAT+TGG - chr4.4:3323445-3323464 None:intergenic 30.0%
GTCTATTCTTTCTCAAAAGA+AGG - chr4.4:3324293-3324312 None:intergenic 30.0%
TAATTGTCAGGGACTAATTT+AGG - chr4.4:3323466-3323485 None:intergenic 30.0%
TCAAATTCAGCATCAACATT+AGG - chr4.4:3324216-3324235 None:intergenic 30.0%
TCCTCCATAACAAAAAACAA+AGG + chr4.4:3323670-3323689 MS.gene05885:CDS 30.0%
TTTATGTTGACAAGTTTGGT+AGG + chr4.4:3324490-3324509 MS.gene05885:CDS 30.0%
! CTTTCAACTAACAACTTGTT+TGG + chr4.4:3323990-3324009 MS.gene05885:CDS 30.0%
! GTGATTTTTCTGTTTGTGTT+GGG + chr4.4:3324853-3324872 MS.gene05885:CDS 30.0%
! TGTGATTTTTCTGTTTGTGT+TGG + chr4.4:3324852-3324871 MS.gene05885:CDS 30.0%
! TTCATCTTTTCTTGCATTGT+TGG + chr4.4:3323240-3323259 MS.gene05885:CDS 30.0%
!! AACAACTTGTTTGGGAATTT+TGG + chr4.4:3323999-3324018 MS.gene05885:CDS 30.0%
!! AATGTTTGGTGTAAGAAACT+CGG + chr4.4:3323389-3323408 MS.gene05885:intron 30.0%
!!! ACCTTTGTTTTTTGTTATGG+AGG - chr4.4:3323674-3323693 None:intergenic 30.0%
!!! CCTACCTTTGTTTTTTGTTA+TGG - chr4.4:3323677-3323696 None:intergenic 30.0%
AAGGAAGAATTGTGCAACAA+TGG - chr4.4:3324992-3325011 None:intergenic 35.0%
AATGGAACCAACAACAATAC+TGG - chr4.4:3323704-3323723 None:intergenic 35.0%
ATTATTGGTCGTATCCTTCT+TGG + chr4.4:3323778-3323797 MS.gene05885:CDS 35.0%
CAAATCCAAGAGTTTGGAAA+AGG - chr4.4:3324398-3324417 None:intergenic 35.0%
CAGCTGATCTTATCTCTAAT+GGG - chr4.4:3324930-3324949 None:intergenic 35.0%
CATATCTCTTCCAAAACCAA+TGG - chr4.4:3325152-3325171 None:intergenic 35.0%
CCAATAAACATAACAATGGC+TGG - chr4.4:3324102-3324121 None:intergenic 35.0%
CCAGCCATTGTTATGTTTAT+TGG + chr4.4:3324099-3324118 MS.gene05885:CDS 35.0%
CCTAGAATCAATTAGTTCAC+CGG + chr4.4:3324643-3324662 MS.gene05885:intron 35.0%
GAGTTTCTTACACCAAACAT+TGG - chr4.4:3323390-3323409 None:intergenic 35.0%
GCCATTGTTATGTTTATTGG+TGG + chr4.4:3324102-3324121 MS.gene05885:CDS 35.0%
GTTTCCTCTCATACACATTT+GGG - chr4.4:3323546-3323565 None:intergenic 35.0%
TAATTGATTATCCTTGCAGG+TGG + chr4.4:3323484-3323503 MS.gene05885:intron 35.0%
TCGGACACCTTAAACAAATA+TGG + chr4.4:3323408-3323427 MS.gene05885:intron 35.0%
TCTCTCTTTGGATATGATCT+TGG + chr4.4:3323276-3323295 MS.gene05885:CDS 35.0%
TGGAAGAGATATGTAACAGA+TGG + chr4.4:3325159-3325178 MS.gene05885:CDS 35.0%
TGTTTCCTCTCATACACATT+TGG - chr4.4:3323547-3323566 None:intergenic 35.0%
TTTCTGTTTGTGTTGGGATT+TGG + chr4.4:3324859-3324878 MS.gene05885:CDS 35.0%
! AATTGATTCTAGGTCGAACT+TGG - chr4.4:3324636-3324655 None:intergenic 35.0%
! CTTTTCCAAACTCTTGGATT+TGG + chr4.4:3324396-3324415 MS.gene05885:CDS 35.0%
! TTTGAAGCATTCAAGTTACC+TGG - chr4.4:3323825-3323844 None:intergenic 35.0%
!! CTCAAAAGAAGGTTCTGAAA+TGG - chr4.4:3324282-3324301 None:intergenic 35.0%
!! GTTCTGAAATGGATTCTTGA+TGG - chr4.4:3324271-3324290 None:intergenic 35.0%
!! TGATGGTGGAAATCTCAAAA+GGG + chr4.4:3323185-3323204 MS.gene05885:CDS 35.0%
!!! ATGAGACCATTTTGATTTGC+AGG + chr4.4:3324750-3324769 MS.gene05885:intron 35.0%
!!! ATTTGGTGTCAGTGTCTTTT+TGG + chr4.4:3324825-3324844 MS.gene05885:CDS 35.0%
!!! GGAATCTTCTTACTTTTTGC+TGG + chr4.4:3325036-3325055 MS.gene05885:CDS 35.0%
AACCAGACTCCAATGTAATC+GGG - chr4.4:3324679-3324698 None:intergenic 40.0%
AGCTCCAATGAAGAAGCTAA+TGG - chr4.4:3323722-3323741 None:intergenic 40.0%
ATCTTCTCTTCGAGAACCAT+TGG + chr4.4:3325133-3325152 MS.gene05885:CDS 40.0%
CAAAATGGAAGAGGCAAGAA+AGG + chr4.4:3324167-3324186 MS.gene05885:CDS 40.0%
CAACCAGACTCCAATGTAAT+CGG - chr4.4:3324680-3324699 None:intergenic 40.0%
CAGATCCAAATCCAAGAGTT+TGG - chr4.4:3324404-3324423 None:intergenic 40.0%
CAGCTACCTGCAAATCAAAA+TGG - chr4.4:3324759-3324778 None:intergenic 40.0%
CGCGAAAAATGTGGAAATCA+AGG - chr4.4:3323650-3323669 None:intergenic 40.0%
GAATCAATTAGTTCACCGGT+TGG + chr4.4:3324647-3324666 MS.gene05885:intron 40.0%
GCAGCTGATCTTATCTCTAA+TGG - chr4.4:3324931-3324950 None:intergenic 40.0%
GTTGGGATTTGGAAGATCAT+GGG + chr4.4:3324870-3324889 MS.gene05885:CDS 40.0%
TCACTCTGCCACCTTAAATA+TGG + chr4.4:3325015-3325034 MS.gene05885:CDS 40.0%
TCTAATGGGAAAAGCTCACT+TGG - chr4.4:3324916-3324935 None:intergenic 40.0%
TCTTCCCAAATGTGTATGAG+AGG + chr4.4:3323539-3323558 MS.gene05885:CDS 40.0%
TCTTGTGGAACAAGGCAAAA+TGG + chr4.4:3324152-3324171 MS.gene05885:CDS 40.0%
TGCTGAAATGTTCTTGTGCA+TGG + chr4.4:3324536-3324555 MS.gene05885:CDS 40.0%
TGGTTTGATCCCGATTACAT+TGG + chr4.4:3324667-3324686 MS.gene05885:intron 40.0%
TGTTGAGAGAAGCAGCATTT+AGG - chr4.4:3323747-3323766 None:intergenic 40.0%
TGTTGGGATTTGGAAGATCA+TGG + chr4.4:3324869-3324888 MS.gene05885:CDS 40.0%
TTGGGATTTGGAAGATCATG+GGG + chr4.4:3324871-3324890 MS.gene05885:CDS 40.0%
! AGTTGTTTCCAGTCAGTTGT+TGG - chr4.4:3324353-3324372 None:intergenic 40.0%
! CCGGTGAACTAATTGATTCT+AGG - chr4.4:3324646-3324665 None:intergenic 40.0%
! GGTTCCATTAGCTTCTTCAT+TGG + chr4.4:3323715-3323734 MS.gene05885:CDS 40.0%
! TGGAATTGGATTTGGTAACC+AGG + chr4.4:3323804-3323823 MS.gene05885:CDS 40.0%
! TGGTAGGAGAGCTTTCTTTT+TGG + chr4.4:3324506-3324525 MS.gene05885:CDS 40.0%
!! AGAGCTTTCTTTTTGGAAGC+TGG + chr4.4:3324513-3324532 MS.gene05885:CDS 40.0%
!! ATGGGAACTTGCTTTGTTTC+CGG - chr4.4:3325102-3325121 None:intergenic 40.0%
!! GGATATGATCTTGGTGTTTC+AGG + chr4.4:3323285-3323304 MS.gene05885:CDS 40.0%
!! GGGAATTTTGGTAGCTAACT+TGG + chr4.4:3324011-3324030 MS.gene05885:CDS 40.0%
!! GTGATGGTGGAAATCTCAAA+AGG + chr4.4:3323184-3323203 MS.gene05885:CDS 40.0%
!!! AAGGTTTTGGAGAGAGTTAG+AGG + chr4.4:3324186-3324205 MS.gene05885:CDS 40.0%
!!! ATTGTTTTGGCTCTTGGGTT+TGG + chr4.4:3324784-3324803 MS.gene05885:CDS 40.0%
!!! CAGCAATTGTTTTGGCTCTT+GGG + chr4.4:3324779-3324798 MS.gene05885:CDS 40.0%
!!! TCTTCGAGAACCATTGGTTT+TGG + chr4.4:3325139-3325158 MS.gene05885:CDS 40.0%
AAAGGACAGGTGCATAGAAG+AGG - chr4.4:3324380-3324399 None:intergenic 45.0%
ACCGAGCAAATTCATCCATG+GGG + chr4.4:3324045-3324064 MS.gene05885:CDS 45.0%
ACTTGGAACCAACCATCCTA+AGG - chr4.4:3324899-3324918 None:intergenic 45.0%
AGAGATAATCTCCATCCCCA+TGG - chr4.4:3324063-3324082 None:intergenic 45.0%
AGCAAATTCATCCATGGGGA+TGG + chr4.4:3324049-3324068 MS.gene05885:CDS 45.0%
AGGAGAGCCAGTATTGTTGT+TGG + chr4.4:3323694-3323713 MS.gene05885:CDS 45.0%
ATCCAATTCCAACGCCAAGA+AGG - chr4.4:3323795-3323814 None:intergenic 45.0%
ATCCCGATTACATTGGAGTC+TGG + chr4.4:3324674-3324693 MS.gene05885:intron 45.0%
ATGTCTCCTGCAAAAGTGAG+AGG + chr4.4:3323952-3323971 MS.gene05885:CDS 45.0%
CCAAGAGTTTGGAAAAGGAC+AGG - chr4.4:3324393-3324412 None:intergenic 45.0%
CCTTGTTCCACAAGACTGTT+TGG - chr4.4:3324147-3324166 None:intergenic 45.0%
CTTGGAACCAACCATCCTAA+GGG - chr4.4:3324898-3324917 None:intergenic 45.0%
GACCGAGCAAATTCATCCAT+GGG + chr4.4:3324044-3324063 MS.gene05885:CDS 45.0%
GGAACAAGGCAAAATGGAAG+AGG + chr4.4:3324158-3324177 MS.gene05885:CDS 45.0%
GGCAGCAAAGTATAGAGATG+AGG - chr4.4:3323629-3323648 None:intergenic 45.0%
GTAATCGGGATCAAACCAAC+CGG - chr4.4:3324665-3324684 None:intergenic 45.0%
TAAGGTGGCAGAGTGATACA+AGG - chr4.4:3325011-3325030 None:intergenic 45.0%
TAGAAGTAACTCCACCTGCA+AGG - chr4.4:3323498-3323517 None:intergenic 45.0%
TATGGAGGACGCGAAAAATG+TGG - chr4.4:3323659-3323678 None:intergenic 45.0%
TGAGACACCAAACAGTCTTG+TGG + chr4.4:3324137-3324156 MS.gene05885:CDS 45.0%
TGAGAGGAAACATGCACACT+TGG + chr4.4:3323555-3323574 MS.gene05885:CDS 45.0%
TGCAGGTGGAGTTACTTCTA+TGG + chr4.4:3323498-3323517 MS.gene05885:intron 45.0%
TGGGGATGGAGATTATCTCT+TGG + chr4.4:3324063-3324082 MS.gene05885:CDS 45.0%
! ATCCTTCTTGGCGTTGGAAT+TGG + chr4.4:3323790-3323809 MS.gene05885:CDS 45.0%
! CCAAACAGTCTTGTGGAACA+AGG + chr4.4:3324144-3324163 MS.gene05885:CDS 45.0%
! CCTGTCCTTTTCCAAACTCT+TGG + chr4.4:3324390-3324409 MS.gene05885:CDS 45.0%
! CTAGGTCGAACTTGGTAGTT+CGG - chr4.4:3324628-3324647 None:intergenic 45.0%
! CTTGGCGTTGGAATTGGATT+TGG + chr4.4:3323796-3323815 MS.gene05885:CDS 45.0%
! GGAAGAGGCAAGAAAGGTTT+TGG + chr4.4:3324173-3324192 MS.gene05885:CDS 45.0%
! GGTAGCTGCAGCAATTGTTT+TGG + chr4.4:3324771-3324790 MS.gene05885:intron 45.0%
! TCCCCATGGATGAATTTGCT+CGG - chr4.4:3324049-3324068 None:intergenic 45.0%
! TCTTGCATTGTTGGTGCTCT+TGG + chr4.4:3323249-3323268 MS.gene05885:CDS 45.0%
!! ACAAGACTGTTTGGTGTCTC+AGG - chr4.4:3324138-3324157 None:intergenic 45.0%
!! ATCAGCTGCACAAAGTGTTG+TGG + chr4.4:3324942-3324961 MS.gene05885:CDS 45.0%
!!! GCAGCAATTGTTTTGGCTCT+TGG + chr4.4:3324778-3324797 MS.gene05885:CDS 45.0%
CCAGTCAGTTGTTGGAATGC+AGG - chr4.4:3324345-3324364 None:intergenic 50.0%
CCTGCATTCCAACAACTGAC+TGG + chr4.4:3324342-3324361 MS.gene05885:CDS 50.0%
CGACCGAGCAAATTCATCCA+TGG + chr4.4:3324043-3324062 MS.gene05885:CDS 50.0%
GACAGGTGCATAGAAGAGGA+TGG - chr4.4:3324376-3324395 None:intergenic 50.0%
! TGCATTGTTGGTGCTCTTGG+TGG + chr4.4:3323252-3323271 MS.gene05885:CDS 50.0%
!! ACTGCTCCTCTCACTTTTGC+AGG - chr4.4:3323961-3323980 None:intergenic 50.0%
!! TTGGCTCTTGGGTTTGGTGA+TGG + chr4.4:3324790-3324809 MS.gene05885:CDS 50.0%
ATGGGGACCCTTAGGATGGT+TGG + chr4.4:3324888-3324907 MS.gene05885:CDS 55.0%
GATCATGGGGACCCTTAGGA+TGG + chr4.4:3324884-3324903 MS.gene05885:CDS 55.0%
GGAAGATCATGGGGACCCTT+AGG + chr4.4:3324880-3324899 MS.gene05885:CDS 55.0%
GGTCGTATCCTTCTTGGCGT+TGG + chr4.4:3323784-3323803 MS.gene05885:CDS 55.0%
! GCTCTTGGTGGCTCTCTCTT+TGG + chr4.4:3323264-3323283 MS.gene05885:CDS 55.0%
!! GCAGGTGGAGGATTTGGTGA+TGG + chr4.4:3323168-3323187 MS.gene05885:CDS 55.0%
!! GGTGGAGGATTTGGTGATGG+TGG + chr4.4:3323171-3323190 MS.gene05885:CDS 55.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 3323165 3325215 3323165 ID=MS.gene05885
chr4.4 mRNA 3323165 3325215 3323165 ID=MS.gene05885.t1;Parent=MS.gene05885
chr4.4 exon 3323165 3323306 3323165 ID=MS.gene05885.t1.exon1;Parent=MS.gene05885.t1
chr4.4 CDS 3323165 3323306 3323165 ID=cds.MS.gene05885.t1;Parent=MS.gene05885.t1
chr4.4 exon 3323503 3323825 3323503 ID=MS.gene05885.t1.exon2;Parent=MS.gene05885.t1
chr4.4 CDS 3323503 3323825 3323503 ID=cds.MS.gene05885.t1;Parent=MS.gene05885.t1
chr4.4 exon 3323928 3324557 3323928 ID=MS.gene05885.t1.exon3;Parent=MS.gene05885.t1
chr4.4 CDS 3323928 3324557 3323928 ID=cds.MS.gene05885.t1;Parent=MS.gene05885.t1
chr4.4 exon 3324772 3325215 3324772 ID=MS.gene05885.t1.exon4;Parent=MS.gene05885.t1
chr4.4 CDS 3324772 3325215 3324772 ID=cds.MS.gene05885.t1;Parent=MS.gene05885.t1
Gene Sequence

>MS.gene05885

ATGGCAGGTGGAGGATTTGGTGATGGTGGAAATCTCAAAAGGGCTCATCTTTATGAATACAAGATTACAGGGTACTTCATCTTTTCTTGCATTGTTGGTGCTCTTGGTGGCTCTCTCTTTGGATATGATCTTGGTGTTTCAGGTGAGAGTGAATGTTTTATCAATTGTCAATTCTCACATTGTCATATAAATATTACCTAATAAATTACCAAACATAACATACCAATGTTTGGTGTAAGAAACTCGGACACCTTAAACAAATATGGATTTTCTCGTCCCAATTAAATTTGAGTGAAGACCTAAATTAGTCCCTGACAATTAATTGATTATCCTTGCAGGTGGAGTTACTTCTATGGATGATTTCTTGAAAGAATTCTTCCCAAATGTGTATGAGAGGAAACATGCACACTTGGCAGAAACAGATTATTGTAAATATGATGATCAAATGTTGACACTTTTCACCTCATCTCTATACTTTGCTGCCTTGATTTCCACATTTTTCGCGTCCTCCATAACAAAAAACAAAGGTAGGAGAGCCAGTATTGTTGTTGGTTCCATTAGCTTCTTCATTGGAGCTGTCCTAAATGCTGCTTCTCTCAACATTTATATGTTGATTATTGGTCGTATCCTTCTTGGCGTTGGAATTGGATTTGGTAACCAGGTAACTTGAATGCTTCAAAATGATAAATAATGAGTTTATGTCAATACACACACACACACACACGTGTGTGTTATAAACTAACTTCTTGTTGTTATTATTTAGGCTGTTCCCTTATATCTGTCAGAAATGTCTCCTGCAAAAGTGAGAGGAGCAGTGAACCAACTCTTTCAACTAACAACTTGTTTGGGAATTTTGGTAGCTAACTTGGTAAATTATGCGACCGAGCAAATTCATCCATGGGGATGGAGATTATCTCTTGGTTTAGCAGTAGTTCCAGCCATTGTTATGTTTATTGGTGGTTTGTTGTGTCCTGAGACACCAAACAGTCTTGTGGAACAAGGCAAAATGGAAGAGGCAAGAAAGGTTTTGGAGAGAGTTAGAGGTACGCCTAATGTTGATGCTGAATTTGAAGATCTTGTTGAAGCAAGCAGAGAAGCACAAGCCATCAAGAATCCATTTCAGAACCTTCTTTTGAGAAAGAATAGACCACAATTTGTAATTGGTGCATTGGCTATTCCTGCATTCCAACAACTGACTGGAAACAACTCCATCCTCTTCTATGCACCTGTCCTTTTCCAAACTCTTGGATTTGGATCTGCTGCATCTCTTTATTCTTCTGTCATCACTAGTATTGCACTTGTTCTTGCCACTTTGATCTCAATGTTTTATGTTGACAAGTTTGGTAGGAGAGCTTTCTTTTTGGAAGCTGGTGCTGAAATGTTCTTGTGCATGGTAAGTACTACACCATCTTTTTTTTCTTCTTAATTTTCACCTACTTAAATAATGTTTCAAAACTGGACCGAACTACCAAGTTCGACCTAGAATCAATTAGTTCACCGGTTGGTTTGATCCCGATTACATTGGAGTCTGGTTGAAATATATTTTTTCAAGGCGGGTCGATTTAACTGATTTTAATGCTAATATATGAGACCATTTTGATTTGCAGGTAGCTGCAGCAATTGTTTTGGCTCTTGGGTTTGGTGATGGCAAACAATTATCATTTGGTGTCAGTGTCTTTTTGGTTATTGTGATTTTTCTGTTTGTGTTGGGATTTGGAAGATCATGGGGACCCTTAGGATGGTTGGTTCCAAGTGAGCTTTTCCCATTAGAGATAAGATCAGCTGCACAAAGTGTTGTGGTGTGTGTTAACATGATCTTCACTGCCATTGTTGCACAATTCTTCCTTGTATCACTCTGCCACCTTAAATATGGAATCTTCTTACTTTTTGCTGGCTTGATTCTCGTCATGAGTCTTTTCATATTCTTTCTATTGCCGGAAACAAAGCAAGTTCCCATTGAAGAGATTTATCTTCTCTTCGAGAACCATTGGTTTTGGAAGAGATATGTAACAGATGGAAATCAAGAGAGAGCATCAAATGAACATGCATAA
Protein sequence

>MS.gene05885.t1

MAGGGFGDGGNLKRAHLYEYKITGYFIFSCIVGALGGSLFGYDLGVSGGVTSMDDFLKEFFPNVYERKHAHLAETDYCKYDDQMLTLFTSSLYFAALISTFFASSITKNKGRRASIVVGSISFFIGAVLNAASLNIYMLIIGRILLGVGIGFGNQAVPLYLSEMSPAKVRGAVNQLFQLTTCLGILVANLVNYATEQIHPWGWRLSLGLAVVPAIVMFIGGLLCPETPNSLVEQGKMEEARKVLERVRGTPNVDAEFEDLVEASREAQAIKNPFQNLLLRKNRPQFVIGALAIPAFQQLTGNNSILFYAPVLFQTLGFGSAASLYSSVITSIALVLATLISMFYVDKFGRRAFFLEAGAEMFLCMVAAAIVLALGFGDGKQLSFGVSVFLVIVIFLFVLGFGRSWGPLGWLVPSELFPLEIRSAAQSVVVCVNMIFTAIVAQFFLVSLCHLKYGIFLLFAGLILVMSLFIFFLLPETKQVPIEEIYLLFENHWFWKRYVTDGNQERASNEHA