AlfalfaGEDB | MS.gene059437

M. sativa cultivar XinJiangDaYe / MS.gene059437

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene059437.t1	XP_013464339.1	98.6	143	2	0	1	143	969	1111	4.00E-71	277.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene059437.t1	Q9SHI2	74.3	140	36	0	1	140	959	1098	7.2e-53	208.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene059437.t1	A0A072V8Q5	98.6	143	2	0	1	143	969	1111	2.9e-71	277.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene059437	MS.gene059440	0.861854	7.65E-64	-1.69E-46
MS.gene059437	MS.gene074358	0.816336	5.83E-52	-1.69E-46
MS.gene059437	MS.gene38111	-0.800135	1.66E-48	-1.69E-46
MS.gene059437	MS.gene50571	0.804141	2.49E-49	-1.69E-46
MS.gene059437	MS.gene54717	0.803951	2.73E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene059437.t1	MTR_2g070020	98.601	143	2	0	1	143	969	1111	2.68e-93	292
MS.gene059437.t1	MTR_2g060730	82.400	125	5	2	19	143	1	108	3.45e-65	194
MS.gene059437.t1	MTR_1g047670	66.116	121	39	1	1	119	971	1091	2.73e-49	169
MS.gene059437.t1	MTR_1g079520	56.391	133	56	2	1	131	928	1060	6.80e-42	148
MS.gene059437.t1	MTR_1g069470	51.261	119	55	2	1	118	864	980	6.74e-33	122
MS.gene059437.t1	MTR_7g098610	47.328	131	67	2	1	130	873	1002	5.47e-32	119
MS.gene059437.t1	MTR_4g036575	48.739	119	60	1	1	118	881	999	7.84e-32	119
MS.gene059437.t1	MTR_2g090710	53.509	114	49	3	1	114	854	963	6.20e-31	117
MS.gene059437.t1	MTR_4g088320	53.509	114	49	2	1	114	857	966	1.57e-30	115
MS.gene059437.t1	MTR_5g014700	49.573	117	55	2	1	116	852	965	1.61e-30	115

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene059437.t1	AT1G17230	74.286	140	36	0	1	140	959	1098	8.49e-64	210
MS.gene059437.t1	AT1G17230	74.286	140	36	0	1	140	959	1098	1.83e-63	209
MS.gene059437.t1	AT5G63930	63.248	117	43	0	1	117	901	1017	9.94e-47	162
MS.gene059437.t1	AT5G63930	63.248	117	43	0	1	117	965	1081	9.96e-47	162
MS.gene059437.t1	AT2G33170	65.000	120	41	1	1	119	985	1104	3.55e-46	160
MS.gene059437.t1	AT2G33170	65.000	120	41	1	1	119	985	1104	3.55e-46	160
MS.gene059437.t1	AT4G28650	50.704	142	66	3	1	140	863	1002	3.11e-36	132
MS.gene059437.t1	AT1G08590	51.261	119	57	1	1	118	886	1004	9.98e-35	127
MS.gene059437.t1	AT5G61480	50.420	119	58	1	1	118	883	1001	1.46e-34	127
MS.gene059437.t1	AT1G34110	48.739	119	60	1	1	118	935	1053	1.60e-33	124

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Find 26 sgRNAs with CRISPR-Local

Find 56 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCACCACCTTGCTCCAA+TGG	0.513354	2.3:+25579124	None:intergenic
AAATCTATGTCTGCTGTTGC+TGG	0.360990	2.3:-25579766	None:intergenic
AAATGTGACATCTATAGTTT+TGG	0.249876	2.3:-25579190	MS.gene059437:CDS
AAGGTGGTGATTTAGTGAGC+TGG	0.548290	2.3:-25579114	MS.gene059437:CDS
ACACTTGAGCAATCTAACCT+TGG	0.561834	2.3:+25578835	None:intergenic
AGAATATGCTTACACAATGA+AGG	0.478520	2.3:-25579221	MS.gene059437:CDS
AGGTGGTGATTTAGTGAGCT+GGG	0.610738	2.3:-25579113	MS.gene059437:CDS
ATATAAAAGCTCTTCTTCCA+AGG	0.535497	2.3:-25578852	MS.gene059437:CDS
ATGTAGGAGAGTTTGGTGAT+TGG	0.486037	2.3:+25578894	None:intergenic
CAAGTTCATCTCCACTTAAT+AGG	0.341851	2.3:-25578970	MS.gene059437:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACACATGACCTCAATATAT+AGG	-	chr2.3:25579240-25579259	MS.gene059437:intron	30.0%
AGAATATGCTTACACAATGA+AGG	-	chr2.3:25579378-25579397	MS.gene059437:intron	30.0%
ATATAAAAGCTCTTCTTCCA+AGG	-	chr2.3:25579747-25579766	MS.gene059437:CDS	30.0%
TAACTGCAACCTATATATTG+AGG	+	chr2.3:25579252-25579271	None:intergenic	30.0%
TATTGAACTTATTCGTACCT+GGG	+	chr2.3:25578877-25578896	None:intergenic	30.0%
TTGTGCTAAACATTAAGGAA+TGG	+	chr2.3:25579018-25579037	None:intergenic	30.0%
ATGATATCGTGGAATAATGC+AGG	+	chr2.3:25579111-25579130	None:intergenic	35.0%
ATTGAACTTATTCGTACCTG+GGG	+	chr2.3:25578876-25578895	None:intergenic	35.0%
CAAGTTCATCTCCACTTAAT+AGG	-	chr2.3:25579629-25579648	MS.gene059437:intron	35.0%
GTATTGAACTTATTCGTACC+TGG	+	chr2.3:25578878-25578897	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.3	gene	25578839	25579782	25578839	ID=MS.gene059437
chr2.3	mRNA	25578839	25579782	25578839	ID=MS.gene059437.t1;Parent=MS.gene059437
chr2.3	exon	25579743	25579782	25579743	ID=MS.gene059437.t1.exon1;Parent=MS.gene059437.t1
chr2.3	CDS	25579743	25579782	25579743	ID=cds.MS.gene059437.t1;Parent=MS.gene059437.t1
chr2.3	exon	25578839	25579241	25578839	ID=MS.gene059437.t1.exon2;Parent=MS.gene059437.t1
chr2.3	CDS	25578839	25579241	25578839	ID=cds.MS.gene059437.t1;Parent=MS.gene059437.t1

Gene Sequence

>MS.gene059437

ATGTCTGCTGTTGCTGGATCATATGGCTACATTGCCCCAGGTACGAATAAGTTCAATACAAAGGCACTACATCAATTATAGTTTACTTTCCTTTGTTCACTTTTATAAAATGAGTTGAAAAAAGAATAGCTTATACTTAAGAAAACATATCAAGGGATAGTACCAGCAGAAAATTTCCATTCCTTAATGTTTAGCACAATATTATACCAAGTTGATTTTTCACAATTTTTATTCTGAAACTACAATTTCAGCTGCATTGACCACAGTAGCCTGCATTATTCCACGATATCATGGTTCTAACAATTTTAAATTACGGTCCATAACTGCAATGGTGTCCCGCAATATAAAAGGTTTTGATGTCGTCTTAATGGCATCGCAACCACAATTTCGACTGTATAGACAACACATGACCTCAATATATAGGTTGCAGTTACATGATTGTAATGTAAGACAATTGCGACTGCGACCACAATTTAGAATCATGATTAAGTCATTGTACCTGCTGCATTCTAATTGTTGCTTGATTTATATTTATTTTCAGAATATGCTTACACAATGAAGGTGACTGAAAAATGTGACATCTATAGTTTTGGGGTAGTTTTGCTGGAACTAGTAACTGGTAGGTCACCAGTGCAACCATTGGAGCAAGGTGGTGATTTAGTGAGCTGGGTGAGGAGATCAATTCAAGCATCAATACCTACATCTGAATTATTTGACAAGAGATTGAATTTGAGTGAACAAAAAACTGTTGAAGAAATGTCTCTTATTCTAAAAATTGCACTGTTTTGCACAAGTTCATCTCCACTTAATAGGCCTACAATGAGAGAGGTCATTGCAATGTTGATTGATGCTAGGGAATATGTCAACCAATCACCAAACTCTCCTACATCTGAATGTCCACTTGAAGAATATAAAAGCTCTTCTTCCAAGGTTAGATTGCTCAA

Protein sequence

>MS.gene059437.t1

MSAVAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELVTGRSPVQPLEQGGDLVSWVRRSIQASIPTSELFDKRLNLSEQKTVEEMSLILKIALFCTSSSPLNRPTMREVIAMLIDAREYVNQSPNSPTSECPLEEYKSSSSKVRLL