Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50571.t1 | AES60790.2 | 97.6 | 207 | 5 | 0 | 1 | 207 | 1 | 207 | 9.20E-102 | 379.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50571.t1 | A0A072VL99 | 97.6 | 207 | 5 | 0 | 1 | 207 | 1 | 207 | 6.6e-102 | 379.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene50571 | 0.83307 | 6.59E-56 | -1.69E-46 |
| MS.gene049272 | MS.gene50571 | 0.81324 | 2.83E-51 | -1.69E-46 |
| MS.gene049343 | MS.gene50571 | 0.809672 | 1.69E-50 | -1.69E-46 |
| MS.gene049404 | MS.gene50571 | 0.803285 | 3.75E-49 | -1.69E-46 |
| MS.gene049435 | MS.gene50571 | 0.820685 | 6.02E-53 | -1.69E-46 |
| MS.gene049452 | MS.gene50571 | 0.814326 | 1.63E-51 | -1.69E-46 |
| MS.gene049669 | MS.gene50571 | 0.817259 | 3.62E-52 | -1.69E-46 |
| MS.gene050026 | MS.gene50571 | 0.824432 | 8.10E-54 | -1.69E-46 |
| MS.gene050043 | MS.gene50571 | 0.800444 | 1.44E-48 | -1.69E-46 |
| MS.gene050156 | MS.gene50571 | 0.807279 | 5.46E-50 | -1.69E-46 |
| MS.gene050442 | MS.gene50571 | 0.820976 | 5.16E-53 | -1.69E-46 |
| MS.gene050559 | MS.gene50571 | 0.81026 | 1.26E-50 | -1.69E-46 |
| MS.gene050561 | MS.gene50571 | 0.813767 | 2.17E-51 | -1.69E-46 |
| MS.gene050750 | MS.gene50571 | 0.821184 | 4.62E-53 | -1.69E-46 |
| MS.gene050826 | MS.gene50571 | 0.802178 | 6.35E-49 | -1.69E-46 |
| MS.gene050844 | MS.gene50571 | 0.80658 | 7.68E-50 | -1.69E-46 |
| MS.gene050953 | MS.gene50571 | 0.819294 | 1.25E-52 | -1.69E-46 |
| MS.gene051181 | MS.gene50571 | 0.805884 | 1.08E-49 | -1.69E-46 |
| MS.gene051198 | MS.gene50571 | 0.80385 | 2.86E-49 | -1.69E-46 |
| MS.gene051279 | MS.gene50571 | 0.810453 | 1.14E-50 | -1.69E-46 |
| MS.gene051332 | MS.gene50571 | 0.814711 | 1.34E-51 | -1.69E-46 |
| MS.gene051594 | MS.gene50571 | 0.844182 | 8.86E-59 | -1.69E-46 |
| MS.gene051744 | MS.gene50571 | 0.812059 | 5.13E-51 | -1.69E-46 |
| MS.gene051800 | MS.gene50571 | 0.806912 | 6.53E-50 | -1.69E-46 |
| MS.gene051924 | MS.gene50571 | -0.806459 | 8.14E-50 | -1.69E-46 |
| MS.gene051926 | MS.gene50571 | -0.817356 | 3.44E-52 | -1.69E-46 |
| MS.gene052190 | MS.gene50571 | 0.823386 | 1.42E-53 | -1.69E-46 |
| MS.gene052333 | MS.gene50571 | 0.840042 | 1.10E-57 | -1.69E-46 |
| MS.gene052447 | MS.gene50571 | 0.801168 | 1.02E-48 | -1.69E-46 |
| MS.gene052519 | MS.gene50571 | 0.860738 | 1.68E-63 | -1.69E-46 |
| MS.gene052534 | MS.gene50571 | 0.812987 | 3.21E-51 | -1.69E-46 |
| MS.gene052582 | MS.gene50571 | 0.814394 | 1.58E-51 | -1.69E-46 |
| MS.gene052584 | MS.gene50571 | 0.81627 | 6.03E-52 | -1.69E-46 |
| MS.gene052586 | MS.gene50571 | 0.817969 | 2.50E-52 | -1.69E-46 |
| MS.gene052677 | MS.gene50571 | 0.800925 | 1.15E-48 | -1.69E-46 |
| MS.gene052773 | MS.gene50571 | 0.84178 | 3.86E-58 | -1.69E-46 |
| MS.gene052863 | MS.gene50571 | 0.80701 | 6.23E-50 | -1.69E-46 |
| MS.gene053006 | MS.gene50571 | 0.81421 | 1.73E-51 | -1.69E-46 |
| MS.gene053166 | MS.gene50571 | 0.826125 | 3.22E-54 | -1.69E-46 |
| MS.gene053202 | MS.gene50571 | 0.801175 | 1.02E-48 | -1.69E-46 |
| MS.gene053226 | MS.gene50571 | 0.814995 | 1.16E-51 | -1.69E-46 |
| MS.gene05350 | MS.gene50571 | 0.818403 | 2.00E-52 | -1.69E-46 |
| MS.gene05414 | MS.gene50571 | 0.814134 | 1.80E-51 | -1.69E-46 |
| MS.gene05415 | MS.gene50571 | 0.859127 | 5.13E-63 | -1.69E-46 |
| MS.gene05423 | MS.gene50571 | 0.821903 | 3.15E-53 | -1.69E-46 |
| MS.gene054291 | MS.gene50571 | -0.8632 | 2.95E-64 | -1.69E-46 |
| MS.gene054405 | MS.gene50571 | 0.813138 | 2.98E-51 | -1.69E-46 |
| MS.gene054467 | MS.gene50571 | 0.818736 | 1.68E-52 | -1.69E-46 |
| MS.gene054468 | MS.gene50571 | 0.83231 | 1.02E-55 | -1.69E-46 |
| MS.gene054479 | MS.gene50571 | 0.817992 | 2.47E-52 | -1.69E-46 |
| MS.gene054559 | MS.gene50571 | 0.802757 | 4.82E-49 | -1.69E-46 |
| MS.gene054651 | MS.gene50571 | 0.825062 | 5.75E-54 | -1.69E-46 |
| MS.gene054775 | MS.gene50571 | 0.819751 | 9.85E-53 | -1.69E-46 |
| MS.gene054991 | MS.gene50571 | 0.806087 | 9.75E-50 | -1.69E-46 |
| MS.gene055227 | MS.gene50571 | 0.811429 | 7.03E-51 | -1.69E-46 |
| MS.gene055228 | MS.gene50571 | 0.821717 | 3.48E-53 | -1.69E-46 |
| MS.gene055701 | MS.gene50571 | 0.818949 | 1.50E-52 | -1.69E-46 |
| MS.gene055818 | MS.gene50571 | 0.862533 | 4.74E-64 | -1.69E-46 |
| MS.gene055841 | MS.gene50571 | 0.813386 | 2.63E-51 | -1.69E-46 |
| MS.gene055926 | MS.gene50571 | 0.814058 | 1.87E-51 | -1.69E-46 |
| MS.gene056050 | MS.gene50571 | 0.806551 | 7.79E-50 | -1.69E-46 |
| MS.gene056162 | MS.gene50571 | 0.82126 | 4.44E-53 | -1.69E-46 |
| MS.gene056174 | MS.gene50571 | 0.860668 | 1.76E-63 | -1.69E-46 |
| MS.gene056252 | MS.gene50571 | 0.800032 | 1.74E-48 | -1.69E-46 |
| MS.gene056272 | MS.gene50571 | 0.804797 | 1.82E-49 | -1.69E-46 |
| MS.gene056366 | MS.gene50571 | 0.801517 | 8.67E-49 | -1.69E-46 |
| MS.gene056373 | MS.gene50571 | 0.812578 | 3.95E-51 | -1.69E-46 |
| MS.gene056506 | MS.gene50571 | 0.831318 | 1.79E-55 | -1.69E-46 |
| MS.gene056776 | MS.gene50571 | 0.803133 | 4.03E-49 | -1.69E-46 |
| MS.gene056779 | MS.gene50571 | 0.81605 | 6.75E-52 | -1.69E-46 |
| MS.gene05686 | MS.gene50571 | 0.803176 | 3.95E-49 | -1.69E-46 |
| MS.gene056873 | MS.gene50571 | 0.801644 | 8.17E-49 | -1.69E-46 |
| MS.gene05690 | MS.gene50571 | 0.8063 | 8.79E-50 | -1.69E-46 |
| MS.gene057012 | MS.gene50571 | 0.818708 | 1.70E-52 | -1.69E-46 |
| MS.gene057026 | MS.gene50571 | 0.83736 | 5.44E-57 | -1.69E-46 |
| MS.gene057156 | MS.gene50571 | -0.802813 | 4.69E-49 | -1.69E-46 |
| MS.gene057208 | MS.gene50571 | 0.83686 | 7.31E-57 | -1.69E-46 |
| MS.gene057444 | MS.gene50571 | 0.800757 | 1.24E-48 | -1.69E-46 |
| MS.gene057598 | MS.gene50571 | 0.829245 | 5.73E-55 | -1.69E-46 |
| MS.gene058010 | MS.gene50571 | 0.801483 | 8.82E-49 | -1.69E-46 |
| MS.gene058037 | MS.gene50571 | 0.801658 | 8.11E-49 | -1.69E-46 |
| MS.gene058625 | MS.gene50571 | 0.829097 | 6.23E-55 | -1.69E-46 |
| MS.gene058979 | MS.gene50571 | 0.818791 | 1.63E-52 | -1.69E-46 |
| MS.gene059272 | MS.gene50571 | 0.824074 | 9.83E-54 | -1.69E-46 |
| MS.gene059437 | MS.gene50571 | 0.804141 | 2.49E-49 | -1.69E-46 |
| MS.gene059438 | MS.gene50571 | 0.824505 | 7.78E-54 | -1.69E-46 |
| MS.gene059439 | MS.gene50571 | 0.819576 | 1.08E-52 | -1.69E-46 |
| MS.gene059440 | MS.gene50571 | 0.806306 | 8.77E-50 | -1.69E-46 |
| MS.gene059584 | MS.gene50571 | 0.825956 | 3.53E-54 | -1.69E-46 |
| MS.gene059625 | MS.gene50571 | 0.806238 | 9.07E-50 | -1.69E-46 |
| MS.gene059842 | MS.gene50571 | 0.805783 | 1.13E-49 | -1.69E-46 |
| MS.gene060322 | MS.gene50571 | 0.819118 | 1.37E-52 | -1.69E-46 |
| MS.gene060373 | MS.gene50571 | 0.815968 | 7.04E-52 | -1.69E-46 |
| MS.gene060521 | MS.gene50571 | 0.814548 | 1.46E-51 | -1.69E-46 |
| MS.gene06052 | MS.gene50571 | 0.808409 | 3.14E-50 | -1.69E-46 |
| MS.gene060634 | MS.gene50571 | -0.808898 | 2.47E-50 | -1.69E-46 |
| MS.gene060879 | MS.gene50571 | 0.803128 | 4.04E-49 | -1.69E-46 |
| MS.gene061040 | MS.gene50571 | -0.80526 | 1.45E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50571.t1 | MTR_1g070900 | 97.585 | 207 | 5 | 0 | 1 | 207 | 1 | 207 | 9.18e-149 | 413 |
| MS.gene50571.t1 | MTR_1g070900 | 97.585 | 207 | 5 | 0 | 1 | 207 | 1 | 207 | 1.57e-148 | 413 |
| MS.gene50571.t1 | MTR_1g070900 | 98.413 | 189 | 3 | 0 | 1 | 189 | 1 | 189 | 4.89e-137 | 383 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50571.t1 | AT5G43680 | 39.720 | 214 | 109 | 5 | 1 | 207 | 1 | 201 | 9.15e-41 | 139 |
| MS.gene50571.t1 | AT5G43680 | 39.720 | 214 | 109 | 5 | 1 | 207 | 1 | 201 | 9.15e-41 | 139 |
Find 60 sgRNAs with CRISPR-Local
Find 135 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCCGATGAACCATTCTTTA+TGG | 0.158677 | 1.2:+54230873 | None:intergenic |
| CATAGTTCAAGAAGCAATTT+TGG | 0.174077 | 1.2:-54230011 | MS.gene50571:CDS |
| ACTTTGCATATTTAATGATT+TGG | 0.278446 | 1.2:+54230933 | None:intergenic |
| TTATTCACCCCAGCATATTC+AGG | 0.302866 | 1.2:+54231084 | None:intergenic |
| TTAGGTTCATAAGGAACTTC+AGG | 0.325877 | 1.2:-54231350 | MS.gene50571:intron |
| AGCAACTGCTTATGCAAGTT+TGG | 0.332765 | 1.2:-54230908 | MS.gene50571:CDS |
| GAGGCCATTCGTCATGAAAT+TGG | 0.333625 | 1.2:-54231310 | MS.gene50571:CDS |
| AGCTAGCCTCCCTGCTGTTC+TGG | 0.335117 | 1.2:+54231877 | None:intergenic |
| TGGAGAAATATTTCTGTTGC+TGG | 0.344609 | 1.2:-54232037 | MS.gene50571:CDS |
| GGAGCTACTGCTGCTGTGAT+TGG | 0.363534 | 1.2:-54232015 | MS.gene50571:intron |
| GATATCATTGGCAAATCCTT+TGG | 0.363620 | 1.2:+54231899 | None:intergenic |
| CCAGTTTCTGCTGAAAATAC+TGG | 0.392588 | 1.2:-54230799 | MS.gene50571:CDS |
| AGCAGGGAGGCTAGCTGGAC+GGG | 0.426637 | 1.2:-54231870 | MS.gene50571:CDS |
| GATGAACCATTCTTTATGGC+AGG | 0.436847 | 1.2:+54230877 | None:intergenic |
| AGGCTAGCTGGACGGGCAGT+TGG | 0.440898 | 1.2:-54231863 | MS.gene50571:CDS |
| TTATCATGCCTCCGAGTTGA+TGG | 0.457366 | 1.2:+54231262 | None:intergenic |
| GGCAGTTGGATATGTACAAT+TGG | 0.468263 | 1.2:-54231849 | MS.gene50571:CDS |
| AGAACAGCAGGGAGGCTAGC+TGG | 0.471150 | 1.2:-54231875 | MS.gene50571:CDS |
| TGCATATTTAATGATTTGGA+TGG | 0.478378 | 1.2:+54230937 | None:intergenic |
| CCTGCTGTTCTGGATATCAT+TGG | 0.485428 | 1.2:+54231887 | None:intergenic |
| AGCATATCATTCATAAATCC+TGG | 0.488462 | 1.2:-54231286 | MS.gene50571:CDS |
| GAAGTTGAGGATGTTAAAGT+TGG | 0.493213 | 1.2:-54230841 | MS.gene50571:CDS |
| GGAGAAATATTTCTGTTGCT+GGG | 0.498165 | 1.2:-54232036 | MS.gene50571:CDS |
| CCAATGATATCCAGAACAGC+AGG | 0.503283 | 1.2:-54231887 | MS.gene50571:CDS |
| TGCTTATGCAAGTTTGGCAC+AGG | 0.516642 | 1.2:-54230902 | MS.gene50571:CDS |
| GACAGAAAACCTGAATATGC+TGG | 0.517261 | 1.2:-54231093 | MS.gene50571:CDS |
| GGCAAATAGCACTGAAGTTG+AGG | 0.519368 | 1.2:-54230854 | MS.gene50571:CDS |
| CTGGACTCTTACCAAATCGC+GGG | 0.532450 | 1.2:-54230780 | MS.gene50571:CDS |
| CAAGAACACTGAACAATGCT+GGG | 0.533552 | 1.2:-54232069 | None:intergenic |
| TGCCTCCGAGTTGATGGGCC+AGG | 0.534429 | 1.2:+54231268 | None:intergenic |
| CTCAATATCCTCTCATACCA+AGG | 0.536160 | 1.2:-54231061 | MS.gene50571:intron |
| ATGAACCATTCTTTATGGCA+GGG | 0.539656 | 1.2:+54230878 | None:intergenic |
| CAGGCCCCTGCCATAAAGAA+TGG | 0.540758 | 1.2:-54230883 | MS.gene50571:CDS |
| ACAGAAAACCTGAATATGCT+GGG | 0.542451 | 1.2:-54231092 | MS.gene50571:CDS |
| TGAACCATTCTTTATGGCAG+GGG | 0.543010 | 1.2:+54230879 | None:intergenic |
| CAGCAGGGAGGCTAGCTGGA+CGG | 0.554377 | 1.2:-54231871 | MS.gene50571:CDS |
| TATCATGCCTCCGAGTTGAT+GGG | 0.558095 | 1.2:+54231263 | None:intergenic |
| GTATTAGAAGCTGATTTGAA+AGG | 0.559557 | 1.2:-54230040 | MS.gene50571:intron |
| GGAAACAATGGCACAGCTAG+AGG | 0.560838 | 1.2:-54231329 | MS.gene50571:CDS |
| GCTTCCAATTTCATGACGAA+TGG | 0.565267 | 1.2:+54231306 | None:intergenic |
| TGCCATAAAGAATGGTTCAT+CGG | 0.576466 | 1.2:-54230875 | MS.gene50571:CDS |
| TAACAGAATCAAACTGTCCA+CGG | 0.582925 | 1.2:+54231825 | None:intergenic |
| GACCAGGCATCTATCTCAGA+TGG | 0.583124 | 1.2:-54231235 | MS.gene50571:intron |
| TGAATGTGCAATAGGTCCAA+AGG | 0.583719 | 1.2:-54231915 | MS.gene50571:intron |
| TACCATCTGAGATAGATGCC+TGG | 0.593353 | 1.2:+54231233 | None:intergenic |
| TAAATCCTGGCCCATCAACT+CGG | 0.600125 | 1.2:-54231273 | MS.gene50571:CDS |
| TCAATAAACCTTGGTATGAG+AGG | 0.600322 | 1.2:+54231053 | None:intergenic |
| CTTCAGGACAGAAAATCTCA+AGG | 0.613401 | 1.2:-54229752 | MS.gene50571:intron |
| AACAGAATCAAACTGTCCAC+GGG | 0.614960 | 1.2:+54231826 | None:intergenic |
| TAAGGAACTTCAGGAAACAA+TGG | 0.628004 | 1.2:-54231341 | MS.gene50571:CDS |
| ACTGGACTCTTACCAAATCG+CGG | 0.630502 | 1.2:-54230781 | MS.gene50571:CDS |
| GCAGCGATCTCAAGTTAACC+AGG | 0.643061 | 1.2:-54231801 | MS.gene50571:intron |
| GAGGCATGATAATCTTGACC+AGG | 0.644493 | 1.2:-54231251 | MS.gene50571:CDS |
| TGGACTCTTACCAAATCGCG+GGG | 0.678679 | 1.2:-54230779 | MS.gene50571:CDS |
| CAATGATATCCAGAACAGCA+GGG | 0.689974 | 1.2:-54231886 | MS.gene50571:CDS |
| CAGAAAACCTGAATATGCTG+GGG | 0.698864 | 1.2:-54231091 | MS.gene50571:CDS |
| ATCCTGGCCCATCAACTCGG+AGG | 0.708372 | 1.2:-54231270 | MS.gene50571:CDS |
| GGATATGTACAATTGGCCCG+TGG | 0.725712 | 1.2:-54231842 | MS.gene50571:CDS |
| TGATATCCAGAACAGCAGGG+AGG | 0.762499 | 1.2:-54231883 | MS.gene50571:CDS |
| GGACTCTTACCAAATCGCGG+GGG | 0.774422 | 1.2:-54230778 | MS.gene50571:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTAAAAAAAAAA+TGG | + | chr1.2:54230357-54230338 | None:intergenic | 0.0% |
| !!! | AAAAAAGATTATGATTTTTT+TGG | - | chr1.2:54230181-54230200 | MS.gene50571:intron | 10.0% |
| !!! | TTTTTTAAAAAAAAAATGGA+AGG | + | chr1.2:54230334-54230353 | None:intergenic | 10.0% |
| !! | ACTAATAAATAATGAAAAGA+AGG | + | chr1.2:54231560-54231579 | None:intergenic | 15.0% |
| !! | AGTCATTAACAATTAATATT+AGG | + | chr1.2:54230040-54230059 | None:intergenic | 15.0% |
| !! | ATTATTTATTAGTAAATGCA+TGG | - | chr1.2:54231567-54231586 | MS.gene50571:intron | 15.0% |
| !!! | AAACAATTTTTATAATCTTC+TGG | + | chr1.2:54231511-54231530 | None:intergenic | 15.0% |
| !!! | ACTATATTTTGTTATTCAAA+AGG | - | chr1.2:54231412-54231431 | MS.gene50571:intron | 15.0% |
| !!! | GAAAAATTAAGGTATTATTT+AGG | + | chr1.2:54231826-54231845 | None:intergenic | 15.0% |
| !!! | TTTAAAATGAATTTTTTCCA+TGG | + | chr1.2:54230109-54230128 | None:intergenic | 15.0% |
| !! | AAAATCAAATATGAGTGATA+GGG | - | chr1.2:54231796-54231815 | MS.gene50571:intron | 20.0% |
| !! | ACTTTGCATATTTAATGATT+TGG | + | chr1.2:54230809-54230828 | None:intergenic | 20.0% |
| !! | CTGTAATCTAAATTATTGAT+GGG | - | chr1.2:54231630-54231649 | MS.gene50571:intron | 20.0% |
| !! | GTACATACTATAAAATTATC+AGG | + | chr1.2:54230722-54230741 | None:intergenic | 20.0% |
| !! | TTTCTTCATTTAGAAATTTC+AGG | + | chr1.2:54230139-54230158 | None:intergenic | 20.0% |
| !!! | ACGTGTATATATTTATTTCT+AGG | - | chr1.2:54230765-54230784 | MS.gene50571:intron | 20.0% |
| !!! | CAAGTAAGATTTTAAAAGTT+AGG | - | chr1.2:54230259-54230278 | MS.gene50571:intron | 20.0% |
| !!! | TATCACTCATATTTGATTTT+GGG | + | chr1.2:54231796-54231815 | None:intergenic | 20.0% |
| !!! | TTATGATTTTTTTGGCATTT+TGG | - | chr1.2:54230189-54230208 | MS.gene50571:intron | 20.0% |
| ! | AAATTGGCAAAATATAACCA+TGG | - | chr1.2:54230089-54230108 | MS.gene50571:intron | 25.0% |
| ! | AACATGGTTATACAAAATCT+CGG | + | chr1.2:54230601-54230620 | None:intergenic | 25.0% |
| ! | ACCTAAAATACAACATATGT+TGG | + | chr1.2:54230375-54230394 | None:intergenic | 25.0% |
| ! | ATGACTTAATGTGTTACATT+TGG | - | chr1.2:54230054-54230073 | MS.gene50571:intron | 25.0% |
| ! | CAAAATCAAATATGAGTGAT+AGG | - | chr1.2:54231795-54231814 | MS.gene50571:intron | 25.0% |
| ! | CAATAATTTAGATTACAGCT+AGG | + | chr1.2:54231628-54231647 | None:intergenic | 25.0% |
| ! | GATATCAGACAATCATATTA+AGG | + | chr1.2:54231018-54231037 | None:intergenic | 25.0% |
| ! | GCTAACATCTAGAAAAATTA+AGG | + | chr1.2:54231837-54231856 | None:intergenic | 25.0% |
| ! | GCTGTAATCTAAATTATTGA+TGG | - | chr1.2:54231629-54231648 | MS.gene50571:intron | 25.0% |
| ! | TCTTACTTCTGTTTATCATA+AGG | - | chr1.2:54229761-54229780 | MS.gene50571:intron | 25.0% |
| ! | TGCAACAATAAACAATAACA+TGG | + | chr1.2:54230617-54230636 | None:intergenic | 25.0% |
| ! | TTCGTTCATTGTTTATACTT+TGG | - | chr1.2:54231462-54231481 | MS.gene50571:intron | 25.0% |
| ! | TTGGTTTCTTGCTAAAAAAT+TGG | - | chr1.2:54230073-54230092 | MS.gene50571:intron | 25.0% |
| !! | AATGCTTTAAATTGCTTATC+CGG | - | chr1.2:54229797-54229816 | MS.gene50571:intron | 25.0% |
| !! | ACCAACATATGTTGTATTTT+AGG | - | chr1.2:54230371-54230390 | MS.gene50571:intron | 25.0% |
| !! | TAAAATTATCAGGTTGTATC+TGG | + | chr1.2:54230712-54230731 | None:intergenic | 25.0% |
| !! | TGCATATTTAATGATTTGGA+TGG | + | chr1.2:54230805-54230824 | None:intergenic | 25.0% |
| !!! | AATAATTTTTGCTGTGTAGT+TGG | - | chr1.2:54230988-54231007 | MS.gene50571:intron | 25.0% |
| !!! | ATATTTTAGCTTGAAGGTAT+TGG | - | chr1.2:54231890-54231909 | MS.gene50571:CDS | 25.0% |
| !!! | ATCACTCATATTTGATTTTG+GGG | + | chr1.2:54231795-54231814 | None:intergenic | 25.0% |
| !!! | ATTATAAGTTGATCGTAGAA+AGG | + | chr1.2:54229970-54229989 | None:intergenic | 25.0% |
| !!! | ATTTTGTTATTCAAAAGGTC+CGG | - | chr1.2:54231417-54231436 | MS.gene50571:intron | 25.0% |
| !!! | CTATCACTCATATTTGATTT+TGG | + | chr1.2:54231797-54231816 | None:intergenic | 25.0% |
| !!! | TAGTGTATATTTTAGCTTGA+AGG | - | chr1.2:54231884-54231903 | MS.gene50571:CDS | 25.0% |
| !!! | TGTTGTATTTTAGGTTCATA+AGG | - | chr1.2:54230380-54230399 | MS.gene50571:intron | 25.0% |
| !!! | TTATAAGTTGATCGTAGAAA+GGG | + | chr1.2:54229969-54229988 | None:intergenic | 25.0% |
| AGCATATCATTCATAAATCC+TGG | - | chr1.2:54230453-54230472 | MS.gene50571:intron | 30.0% | |
| CAAAATCTCGGTAATTGTAT+CGG | + | chr1.2:54230589-54230608 | None:intergenic | 30.0% | |
| CGATCAACTTATAATTCACA+TGG | - | chr1.2:54229975-54229994 | MS.gene50571:intron | 30.0% | |
| GTTGAGAAAAAATCTATCAC+AGG | + | chr1.2:54231113-54231132 | None:intergenic | 30.0% | |
| TTAGGAACATCATAACATCA+AGG | - | chr1.2:54230277-54230296 | MS.gene50571:intron | 30.0% | |
| TTCAATACATGCATATGTAC+AGG | - | chr1.2:54231200-54231219 | MS.gene50571:intron | 30.0% | |
| TTTATAGTATGTACTGCTCT+AGG | - | chr1.2:54230728-54230747 | MS.gene50571:intron | 30.0% | |
| ! | ATCGCTACGTATATCATTTT+TGG | + | chr1.2:54232054-54232073 | None:intergenic | 30.0% |
| ! | ATCTGATTTGAAACAAGCTT+TGG | - | chr1.2:54231674-54231693 | MS.gene50571:intron | 30.0% |
| ! | CATAGTTCAAGAAGCAATTT+TGG | - | chr1.2:54231728-54231747 | MS.gene50571:intron | 30.0% |
| ! | TCACATGGATTTGTTTCATT+AGG | - | chr1.2:54229990-54230009 | MS.gene50571:intron | 30.0% |
| ! | TGTTTATACTTTGGCTCATT+TGG | - | chr1.2:54231471-54231490 | MS.gene50571:intron | 30.0% |
| !! | GAATGCTTGTGTTTTTAACT+AGG | - | chr1.2:54232009-54232028 | MS.gene50571:intron | 30.0% |
| !! | GTATTAGAAGCTGATTTGAA+AGG | - | chr1.2:54231699-54231718 | MS.gene50571:intron | 30.0% |
| AAAGTGAATCGCATGTAGTT+GGG | + | chr1.2:54230218-54230237 | None:intergenic | 35.0% | |
| AAGAAAGCCATAAACATCAC+AGG | + | chr1.2:54231171-54231190 | None:intergenic | 35.0% | |
| ACAGAAAACCTGAATATGCT+GGG | - | chr1.2:54230647-54230666 | MS.gene50571:intron | 35.0% | |
| ATGAACCATTCTTTATGGCA+GGG | + | chr1.2:54230864-54230883 | None:intergenic | 35.0% | |
| CAAGCAAAAACCTTAACTTC+CGG | + | chr1.2:54231439-54231458 | None:intergenic | 35.0% | |
| GAAGTTGAGGATGTTAAAGT+TGG | - | chr1.2:54230898-54230917 | MS.gene50571:CDS | 35.0% | |
| GATATCATTGGCAAATCCTT+TGG | + | chr1.2:54229843-54229862 | None:intergenic | 35.0% | |
| TAACAGAATCAAACTGTCCA+CGG | + | chr1.2:54229917-54229936 | None:intergenic | 35.0% | |
| TAAGGAACTTCAGGAAACAA+TGG | - | chr1.2:54230398-54230417 | MS.gene50571:intron | 35.0% | |
| TCAATAAACCTTGGTATGAG+AGG | + | chr1.2:54230689-54230708 | None:intergenic | 35.0% | |
| TGCCATAAAGAATGGTTCAT+CGG | - | chr1.2:54230864-54230883 | MS.gene50571:CDS | 35.0% | |
| TGTATCTGGTCAATAAACCT+TGG | + | chr1.2:54230698-54230717 | None:intergenic | 35.0% | |
| TTAGGTTCATAAGGAACTTC+AGG | - | chr1.2:54230389-54230408 | MS.gene50571:intron | 35.0% | |
| TTGTGATCCTGTGATGTTTA+TGG | - | chr1.2:54231161-54231180 | MS.gene50571:intron | 35.0% | |
| ! | AGTTCAAGAAGCAATTTTGG+AGG | - | chr1.2:54231731-54231750 | MS.gene50571:intron | 35.0% |
| ! | CCTATTGCACATTCATTTTC+CGG | + | chr1.2:54229819-54229838 | None:intergenic | 35.0% |
| ! | GGAGAAATATTTCTGTTGCT+GGG | - | chr1.2:54229703-54229722 | MS.gene50571:CDS | 35.0% |
| ! | TGGAGAAATATTTCTGTTGC+TGG | - | chr1.2:54229702-54229721 | MS.gene50571:CDS | 35.0% |
| !! | GACTTTACCACGTTTTAGTA+TGG | + | chr1.2:54230312-54230331 | None:intergenic | 35.0% |
| AACAGAATCAAACTGTCCAC+GGG | + | chr1.2:54229916-54229935 | None:intergenic | 40.0% | |
| AGAGGTAGCTCATAATGCAA+AGG | - | chr1.2:54231755-54231774 | MS.gene50571:intron | 40.0% | |
| AGCAACTGCTTATGCAAGTT+TGG | - | chr1.2:54230831-54230850 | MS.gene50571:CDS | 40.0% | |
| CAAAGTGAATCGCATGTAGT+TGG | + | chr1.2:54230219-54230238 | None:intergenic | 40.0% | |
| CAATGATATCCAGAACAGCA+GGG | - | chr1.2:54229853-54229872 | MS.gene50571:intron | 40.0% | |
| CAGAAAACCTGAATATGCTG+GGG | - | chr1.2:54230648-54230667 | MS.gene50571:intron | 40.0% | |
| CCAGTTTCTGCTGAAAATAC+TGG | - | chr1.2:54230940-54230959 | MS.gene50571:CDS | 40.0% | |
| CCGGAAAATGAATGTGCAAT+AGG | - | chr1.2:54229816-54229835 | MS.gene50571:intron | 40.0% | |
| CTCAATATCCTCTCATACCA+AGG | - | chr1.2:54230678-54230697 | MS.gene50571:intron | 40.0% | |
| CTTCAGGACAGAAAATCTCA+AGG | - | chr1.2:54231987-54232006 | MS.gene50571:intron | 40.0% | |
| GACAGAAAACCTGAATATGC+TGG | - | chr1.2:54230646-54230665 | MS.gene50571:intron | 40.0% | |
| GATGAACCATTCTTTATGGC+AGG | + | chr1.2:54230865-54230884 | None:intergenic | 40.0% | |
| GCTTCCAATTTCATGACGAA+TGG | + | chr1.2:54230436-54230455 | None:intergenic | 40.0% | |
| GGCAGTTGGATATGTACAAT+TGG | - | chr1.2:54229890-54229909 | MS.gene50571:intron | 40.0% | |
| GTTACCAGTTCTTGTTCTTC+AGG | - | chr1.2:54231971-54231990 | MS.gene50571:intron | 40.0% | |
| TGAACCATTCTTTATGGCAG+GGG | + | chr1.2:54230863-54230882 | None:intergenic | 40.0% | |
| TGAATGTGCAATAGGTCCAA+AGG | - | chr1.2:54229824-54229843 | MS.gene50571:intron | 40.0% | |
| TGCCGATGAACCATTCTTTA+TGG | + | chr1.2:54230869-54230888 | None:intergenic | 40.0% | |
| TTATTATTACCCCCGCGATT+TGG | + | chr1.2:54230973-54230992 | None:intergenic | 40.0% | |
| TTATTCACCCCAGCATATTC+AGG | + | chr1.2:54230658-54230677 | None:intergenic | 40.0% | |
| TTCAAAAGGTCCGGAAGTTA+AGG | - | chr1.2:54231426-54231445 | MS.gene50571:intron | 40.0% | |
| ! | CCAGTATTTTCAGCAGAAAC+TGG | + | chr1.2:54230943-54230962 | None:intergenic | 40.0% |
| !! | TAAGTTGATCGTAGAAAGGG+AGG | + | chr1.2:54229966-54229985 | None:intergenic | 40.0% |
| !! | TACCACGTTTTAGTATGGAC+AGG | + | chr1.2:54230307-54230326 | None:intergenic | 40.0% |
| ACTGGACTCTTACCAAATCG+CGG | - | chr1.2:54230958-54230977 | MS.gene50571:intron | 45.0% | |
| CCAATGATATCCAGAACAGC+AGG | - | chr1.2:54229852-54229871 | MS.gene50571:intron | 45.0% | |
| CTGTCCTGAAGAACAAGAAC+TGG | + | chr1.2:54231978-54231997 | None:intergenic | 45.0% | |
| GAGGCATGATAATCTTGACC+AGG | - | chr1.2:54230488-54230507 | MS.gene50571:intron | 45.0% | |
| GAGGCCATTCGTCATGAAAT+TGG | - | chr1.2:54230429-54230448 | MS.gene50571:intron | 45.0% | |
| TAAATCCTGGCCCATCAACT+CGG | - | chr1.2:54230466-54230485 | MS.gene50571:intron | 45.0% | |
| TGCCTGTCCATACTAAAACG+TGG | - | chr1.2:54230302-54230321 | MS.gene50571:intron | 45.0% | |
| TGCTTATGCAAGTTTGGCAC+AGG | - | chr1.2:54230837-54230856 | MS.gene50571:CDS | 45.0% | |
| ! | CCTGCTGTTCTGGATATCAT+TGG | + | chr1.2:54229855-54229874 | None:intergenic | 45.0% |
| ! | GGCAAATAGCACTGAAGTTG+AGG | - | chr1.2:54230885-54230904 | MS.gene50571:CDS | 45.0% |
| ! | TACCATCTGAGATAGATGCC+TGG | + | chr1.2:54230509-54230528 | None:intergenic | 45.0% |
| ! | TTATCATGCCTCCGAGTTGA+TGG | + | chr1.2:54230480-54230499 | None:intergenic | 45.0% |
| !! | AGAAGCAATTTTGGAGGCAG+AGG | - | chr1.2:54231737-54231756 | MS.gene50571:intron | 45.0% |
| !! | TATCATGCCTCCGAGTTGAT+GGG | + | chr1.2:54230479-54230498 | None:intergenic | 45.0% |
| CTACTGCTGCTGTGATTGGT+TGG | - | chr1.2:54229728-54229747 | MS.gene50571:CDS | 50.0% | |
| CTGGACTCTTACCAAATCGC+GGG | - | chr1.2:54230959-54230978 | MS.gene50571:intron | 50.0% | |
| GACCAGGCATCTATCTCAGA+TGG | - | chr1.2:54230504-54230523 | MS.gene50571:intron | 50.0% | |
| GCAGCGATCTCAAGTTAACC+AGG | - | chr1.2:54229938-54229957 | MS.gene50571:intron | 50.0% | |
| GGAAACAATGGCACAGCTAG+AGG | - | chr1.2:54230410-54230429 | MS.gene50571:intron | 50.0% | |
| GGATATGTACAATTGGCCCG+TGG | - | chr1.2:54229897-54229916 | MS.gene50571:intron | 50.0% | |
| TGATATCCAGAACAGCAGGG+AGG | - | chr1.2:54229856-54229875 | MS.gene50571:intron | 50.0% | |
| TGGACTCTTACCAAATCGCG+GGG | - | chr1.2:54230960-54230979 | MS.gene50571:intron | 50.0% | |
| !! | ATCGTAGAAAGGGAGGTACC+TGG | + | chr1.2:54229959-54229978 | None:intergenic | 50.0% |
| CAGGCCCCTGCCATAAAGAA+TGG | - | chr1.2:54230856-54230875 | MS.gene50571:CDS | 55.0% | |
| GGACTCTTACCAAATCGCGG+GGG | - | chr1.2:54230961-54230980 | MS.gene50571:intron | 55.0% | |
| GGAGCTACTGCTGCTGTGAT+TGG | - | chr1.2:54229724-54229743 | MS.gene50571:CDS | 55.0% | |
| AGAACAGCAGGGAGGCTAGC+TGG | - | chr1.2:54229864-54229883 | MS.gene50571:intron | 60.0% | |
| ATCCTGGCCCATCAACTCGG+AGG | - | chr1.2:54230469-54230488 | MS.gene50571:intron | 60.0% | |
| ! | AGCTAGCCTCCCTGCTGTTC+TGG | + | chr1.2:54229865-54229884 | None:intergenic | 60.0% |
| ! | AGCAGGGAGGCTAGCTGGAC+GGG | - | chr1.2:54229869-54229888 | MS.gene50571:intron | 65.0% |
| ! | AGGCTAGCTGGACGGGCAGT+TGG | - | chr1.2:54229876-54229895 | MS.gene50571:intron | 65.0% |
| ! | CAGCAGGGAGGCTAGCTGGA+CGG | - | chr1.2:54229868-54229887 | MS.gene50571:intron | 65.0% |
| !! | TGCCTCCGAGTTGATGGGCC+AGG | + | chr1.2:54230474-54230493 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 54229685 | 54232076 | 54229685 | ID=MS.gene50571 |
| chr1.2 | mRNA | 54229685 | 54232076 | 54229685 | ID=MS.gene50571.t1;Parent=MS.gene50571 |
| chr1.2 | exon | 54232016 | 54232076 | 54232016 | ID=MS.gene50571.t1.exon1;Parent=MS.gene50571.t1 |
| chr1.2 | CDS | 54232016 | 54232076 | 54232016 | ID=cds.MS.gene50571.t1;Parent=MS.gene50571.t1 |
| chr1.2 | exon | 54231802 | 54231923 | 54231802 | ID=MS.gene50571.t1.exon2;Parent=MS.gene50571.t1 |
| chr1.2 | CDS | 54231802 | 54231923 | 54231802 | ID=cds.MS.gene50571.t1;Parent=MS.gene50571.t1 |
| chr1.2 | exon | 54231236 | 54231368 | 54231236 | ID=MS.gene50571.t1.exon3;Parent=MS.gene50571.t1 |
| chr1.2 | CDS | 54231236 | 54231368 | 54231236 | ID=cds.MS.gene50571.t1;Parent=MS.gene50571.t1 |
| chr1.2 | exon | 54231062 | 54231117 | 54231062 | ID=MS.gene50571.t1.exon4;Parent=MS.gene50571.t1 |
| chr1.2 | CDS | 54231062 | 54231117 | 54231062 | ID=cds.MS.gene50571.t1;Parent=MS.gene50571.t1 |
| chr1.2 | exon | 54230779 | 54230974 | 54230779 | ID=MS.gene50571.t1.exon5;Parent=MS.gene50571.t1 |
| chr1.2 | CDS | 54230779 | 54230974 | 54230779 | ID=cds.MS.gene50571.t1;Parent=MS.gene50571.t1 |
| chr1.2 | exon | 54230003 | 54230055 | 54230003 | ID=MS.gene50571.t1.exon6;Parent=MS.gene50571.t1 |
| chr1.2 | CDS | 54230003 | 54230055 | 54230003 | ID=cds.MS.gene50571.t1;Parent=MS.gene50571.t1 |
| chr1.2 | exon | 54229685 | 54229768 | 54229685 | ID=MS.gene50571.t1.exon7;Parent=MS.gene50571.t1 |
| chr1.2 | CDS | 54229685 | 54229768 | 54229685 | ID=cds.MS.gene50571.t1;Parent=MS.gene50571.t1 |
| Gene Sequence |
| Protein sequence |
