Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059440.t1 | XP_013464339.1 | 97.5 | 480 | 12 | 0 | 493 | 972 | 632 | 1111 | 2.60E-235 | 825.5 |
| MS.gene059440.t1 | XP_013464339.1 | 54.2 | 72 | 27 | 2 | 1 | 72 | 49 | 114 | 7.60E-09 | 73.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059440.t1 | Q9SHI2 | 68.7 | 399 | 121 | 3 | 572 | 969 | 703 | 1098 | 1.3e-153 | 545.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059440.t1 | A0A072V8Q5 | 97.5 | 480 | 12 | 0 | 493 | 972 | 632 | 1111 | 1.9e-235 | 825.5 |
| MS.gene059440.t1 | A0A072V8Q5 | 54.2 | 72 | 27 | 2 | 1 | 72 | 49 | 114 | 5.5e-09 | 73.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049264 | MS.gene059440 | 0.808715 | 2.70E-50 | -1.69E-46 |
| MS.gene050826 | MS.gene059440 | 0.814495 | 1.50E-51 | -1.69E-46 |
| MS.gene051332 | MS.gene059440 | 0.801738 | 7.81E-49 | -1.69E-46 |
| MS.gene05216 | MS.gene059440 | 0.800801 | 1.22E-48 | -1.69E-46 |
| MS.gene052674 | MS.gene059440 | 0.818174 | 2.25E-52 | -1.69E-46 |
| MS.gene052675 | MS.gene059440 | 0.821416 | 4.08E-53 | -1.69E-46 |
| MS.gene052677 | MS.gene059440 | 0.825556 | 4.39E-54 | -1.69E-46 |
| MS.gene055926 | MS.gene059440 | 0.82902 | 6.50E-55 | -1.69E-46 |
| MS.gene057156 | MS.gene059440 | -0.801751 | 7.77E-49 | -1.69E-46 |
| MS.gene058081 | MS.gene059440 | 0.816839 | 4.50E-52 | -1.69E-46 |
| MS.gene059437 | MS.gene059440 | 0.861854 | 7.65E-64 | -1.69E-46 |
| MS.gene059438 | MS.gene059440 | 0.878331 | 3.06E-69 | -1.69E-46 |
| MS.gene059439 | MS.gene059440 | 0.871075 | 9.01E-67 | -1.69E-46 |
| MS.gene059440 | MS.gene059952 | 0.823643 | 1.24E-53 | -1.69E-46 |
| MS.gene059440 | MS.gene06052 | 0.813899 | 2.03E-51 | -1.69E-46 |
| MS.gene059440 | MS.gene062854 | 0.880644 | 4.63E-70 | -1.69E-46 |
| MS.gene059440 | MS.gene063425 | 0.855065 | 8.10E-62 | -1.69E-46 |
| MS.gene059440 | MS.gene070478 | 0.811671 | 6.23E-51 | -1.69E-46 |
| MS.gene059440 | MS.gene071667 | -0.820266 | 7.51E-53 | -1.69E-46 |
| MS.gene059440 | MS.gene071669 | -0.819641 | 1.04E-52 | -1.69E-46 |
| MS.gene059440 | MS.gene071670 | -0.827525 | 1.49E-54 | -1.69E-46 |
| MS.gene059440 | MS.gene071700 | 0.81315 | 2.96E-51 | -1.69E-46 |
| MS.gene059440 | MS.gene072300 | 0.810318 | 1.22E-50 | -1.69E-46 |
| MS.gene059440 | MS.gene072397 | -0.819499 | 1.12E-52 | -1.69E-46 |
| MS.gene059440 | MS.gene07294 | 0.8057 | 1.18E-49 | -1.69E-46 |
| MS.gene059440 | MS.gene073015 | -0.808137 | 3.59E-50 | -1.69E-46 |
| MS.gene059440 | MS.gene073016 | -0.820964 | 5.19E-53 | -1.69E-46 |
| MS.gene059440 | MS.gene073163 | 0.804709 | 1.90E-49 | -1.69E-46 |
| MS.gene059440 | MS.gene074040 | 0.805499 | 1.30E-49 | -1.69E-46 |
| MS.gene059440 | MS.gene074358 | 0.815766 | 7.81E-52 | -1.69E-46 |
| MS.gene059440 | MS.gene09348 | 0.807755 | 4.33E-50 | -1.69E-46 |
| MS.gene059440 | MS.gene20809 | 0.818128 | 2.30E-52 | -1.69E-46 |
| MS.gene059440 | MS.gene20859 | 0.803134 | 4.03E-49 | -1.69E-46 |
| MS.gene059440 | MS.gene22677 | 0.803602 | 3.22E-49 | -1.69E-46 |
| MS.gene059440 | MS.gene23103 | 0.818612 | 1.79E-52 | -1.69E-46 |
| MS.gene059440 | MS.gene25151 | 0.814744 | 1.32E-51 | -1.69E-46 |
| MS.gene059440 | MS.gene25967 | 0.80202 | 6.84E-49 | -1.69E-46 |
| MS.gene059440 | MS.gene29361 | 0.809664 | 1.69E-50 | -1.69E-46 |
| MS.gene059440 | MS.gene30368 | 0.812258 | 4.64E-51 | -1.69E-46 |
| MS.gene059440 | MS.gene31949 | 0.800832 | 1.20E-48 | -1.69E-46 |
| MS.gene059440 | MS.gene32071 | 0.831847 | 1.32E-55 | -1.69E-46 |
| MS.gene059440 | MS.gene32231 | 0.813021 | 3.16E-51 | -1.69E-46 |
| MS.gene059440 | MS.gene32874 | 0.808766 | 2.64E-50 | -1.69E-46 |
| MS.gene059440 | MS.gene34065 | 0.823463 | 1.37E-53 | -1.69E-46 |
| MS.gene059440 | MS.gene35044 | 0.807181 | 5.73E-50 | -1.69E-46 |
| MS.gene059440 | MS.gene35822 | 0.836156 | 1.10E-56 | -1.69E-46 |
| MS.gene059440 | MS.gene35823 | 0.839126 | 1.91E-57 | -1.69E-46 |
| MS.gene059440 | MS.gene35824 | 0.837092 | 6.37E-57 | -1.69E-46 |
| MS.gene059440 | MS.gene35864 | 0.838949 | 2.12E-57 | -1.69E-46 |
| MS.gene059440 | MS.gene35867 | 0.829195 | 5.90E-55 | -1.69E-46 |
| MS.gene059440 | MS.gene36154 | 0.831367 | 1.74E-55 | -1.69E-46 |
| MS.gene059440 | MS.gene36293 | 0.801508 | 8.71E-49 | -1.69E-46 |
| MS.gene059440 | MS.gene37086 | 0.819627 | 1.05E-52 | -1.69E-46 |
| MS.gene059440 | MS.gene38111 | -0.802315 | 5.95E-49 | -1.69E-46 |
| MS.gene059440 | MS.gene38378 | 0.81486 | 1.24E-51 | -1.69E-46 |
| MS.gene059440 | MS.gene39376 | -0.801852 | 7.40E-49 | -1.69E-46 |
| MS.gene059440 | MS.gene40006 | 0.857316 | 1.77E-62 | -1.69E-46 |
| MS.gene059440 | MS.gene40068 | 0.813405 | 2.60E-51 | -1.69E-46 |
| MS.gene059440 | MS.gene40079 | 0.808519 | 2.98E-50 | -1.69E-46 |
| MS.gene059440 | MS.gene40381 | -0.811551 | 6.62E-51 | -1.69E-46 |
| MS.gene059440 | MS.gene40510 | 0.815744 | 7.90E-52 | -1.69E-46 |
| MS.gene059440 | MS.gene41729 | 0.804781 | 1.83E-49 | -1.69E-46 |
| MS.gene059440 | MS.gene44131 | 0.822184 | 2.71E-53 | -1.69E-46 |
| MS.gene059440 | MS.gene44407 | -0.818843 | 1.59E-52 | -1.69E-46 |
| MS.gene059440 | MS.gene44907 | 0.809073 | 2.27E-50 | -1.69E-46 |
| MS.gene059440 | MS.gene47070 | 0.814048 | 1.88E-51 | -1.69E-46 |
| MS.gene059440 | MS.gene48306 | 0.860568 | 1.89E-63 | -1.69E-46 |
| MS.gene059440 | MS.gene49354 | 0.802321 | 5.93E-49 | -1.69E-46 |
| MS.gene059440 | MS.gene49553 | 0.812021 | 5.23E-51 | -1.69E-46 |
| MS.gene059440 | MS.gene49613 | 0.810374 | 1.19E-50 | -1.69E-46 |
| MS.gene059440 | MS.gene50571 | 0.806306 | 8.77E-50 | -1.69E-46 |
| MS.gene059440 | MS.gene50745 | 0.838668 | 2.51E-57 | -1.69E-46 |
| MS.gene059440 | MS.gene51361 | 0.806834 | 6.79E-50 | -1.69E-46 |
| MS.gene059440 | MS.gene56441 | 0.813824 | 2.10E-51 | -1.69E-46 |
| MS.gene059440 | MS.gene58547 | 0.806064 | 9.86E-50 | -1.69E-46 |
| MS.gene059440 | MS.gene58802 | 0.801544 | 8.57E-49 | -1.69E-46 |
| MS.gene059440 | MS.gene61202 | 0.816145 | 6.43E-52 | -1.69E-46 |
| MS.gene059440 | MS.gene62892 | 0.807021 | 6.19E-50 | -1.69E-46 |
| MS.gene059440 | MS.gene65127 | 0.803441 | 3.48E-49 | -1.69E-46 |
| MS.gene059440 | MS.gene66049 | 0.817637 | 2.97E-52 | -1.69E-46 |
| MS.gene059440 | MS.gene70825 | 0.805226 | 1.48E-49 | -1.69E-46 |
| MS.gene059440 | MS.gene73038 | 0.82743 | 1.57E-54 | -1.69E-46 |
| MS.gene059440 | MS.gene77208 | 0.820771 | 5.75E-53 | -1.69E-46 |
| MS.gene059440 | MS.gene77415 | 0.827827 | 1.26E-54 | -1.69E-46 |
| MS.gene059440 | MS.gene78230 | 0.832106 | 1.14E-55 | -1.69E-46 |
| MS.gene059440 | MS.gene82325 | 0.852871 | 3.47E-61 | -1.69E-46 |
| MS.gene059440 | MS.gene89108 | 0.806818 | 6.84E-50 | -1.69E-46 |
| MS.gene059440 | MS.gene93172 | 0.821394 | 4.13E-53 | -1.69E-46 |
| MS.gene059440 | MS.gene97534 | 0.806366 | 8.52E-50 | -1.69E-46 |
| MS.gene059440 | MS.gene99859 | 0.814155 | 1.78E-51 | -1.69E-46 |
| MS.gene059440 | MS.gene99986 | 0.812894 | 3.37E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 177 sgRNAs with CRISPR-Local
Find 249 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTGGAAATCTTGTGAATT+TGG | 0.113859 | 2.3:+25561478 | MS.gene059440:CDS |
| GTTTCTGATAACATGCTTTC+TGG | 0.124009 | 2.3:+25561512 | MS.gene059440:CDS |
| ACAAGATTTCCAATTGAATT+TGG | 0.181215 | 2.3:-25561470 | None:intergenic |
| GCAGGTTTGAATGGTCTTTC+AGG | 0.210529 | 2.3:+25560360 | MS.gene059440:CDS |
| TTGAGTCACAACAATCTTTC+TGG | 0.212321 | 2.3:+25561659 | MS.gene059440:CDS |
| TTTGCTTGACCATATGTTTC+AGG | 0.216890 | 2.3:+25562582 | MS.gene059440:CDS |
| TTCCGAAGTTGACCAATTTC+AGG | 0.220262 | 2.3:-25561257 | None:intergenic |
| GAGATTTGACCTAACTCTTT+AGG | 0.243095 | 2.3:-25560750 | None:intergenic |
| AAATGTGACATCTATAGTTT+TGG | 0.249876 | 2.3:+25563231 | MS.gene059440:CDS |
| TTGTATCAATACATGGAAAA+TGG | 0.263800 | 2.3:+25562403 | MS.gene059440:CDS |
| CCTTATTCGGCTAACTGATT+TGG | 0.275337 | 2.3:+25561559 | MS.gene059440:CDS |
| AATCACTGTCATCCATCTTT+AGG | 0.287128 | 2.3:+25561908 | MS.gene059440:CDS |
| GATAGCCTTCCGATATCTTT+CGG | 0.293306 | 2.3:-25560606 | None:intergenic |
| ATTAGATATAAAATAGCTTT+AGG | 0.300832 | 2.3:+25562481 | MS.gene059440:CDS |
| GTGAAAGTTTAGAGACATTA+GGG | 0.300992 | 2.3:+25560409 | MS.gene059440:CDS |
| TTCAACTTACTGATTGATTT+CGG | 0.301958 | 2.3:-25560318 | None:intergenic |
| ATAGCCTTCCGATATCTTTC+GGG | 0.309741 | 2.3:-25560605 | None:intergenic |
| GGAAGTATTCCGGACGAATT+AGG | 0.311012 | 2.3:+25561389 | MS.gene059440:CDS |
| CCAAATCAGTTAGCCGAATA+AGG | 0.312951 | 2.3:-25561559 | None:intergenic |
| CAGATAACAATCTTGTTAAC+TGG | 0.317415 | 2.3:+25559902 | MS.gene059440:CDS |
| CTTGGATCAAATAGGCTCTT+TGG | 0.317542 | 2.3:+25561080 | MS.gene059440:CDS |
| GCACTTTGGGAGACCTTATT+CGG | 0.321909 | 2.3:+25561546 | MS.gene059440:CDS |
| CTCAAATTTCCAAGCTCCTT+TGG | 0.322206 | 2.3:-25560822 | None:intergenic |
| GGTTATCTCCCTTCTGAGAT+TGG | 0.330798 | 2.3:+25561317 | MS.gene059440:CDS |
| CATTCAGATGTAGGAGAGTT+TGG | 0.337261 | 2.3:-25563534 | None:intergenic |
| GGTATCATTCCTAAAGAGTT+AGG | 0.337364 | 2.3:+25560741 | MS.gene059440:CDS |
| CCTATTTGAAAACCATTTGC+AGG | 0.340280 | 2.3:+25560791 | MS.gene059440:CDS |
| CAAGTTCATCTCCACTTAAT+AGG | 0.341851 | 2.3:+25563451 | MS.gene059440:CDS |
| CTTAGACGGAATAAGTTTAC+TGG | 0.348971 | 2.3:+25561440 | MS.gene059440:CDS |
| CAGTTTAGGTGGAAGTATTC+CGG | 0.349251 | 2.3:+25561379 | MS.gene059440:CDS |
| TTGTAAGTGAAGCCTTCTTT+TGG | 0.352398 | 2.3:-25562130 | None:intergenic |
| TGCAAGCTCCCTAAGCTATC+AGG | 0.353827 | 2.3:-25561689 | None:intergenic |
| GATTGATTTCGGAATGATTC+CGG | 0.356406 | 2.3:-25560307 | None:intergenic |
| AAATCTATGTCTGCTGTTGC+TGG | 0.360990 | 2.3:+25562655 | MS.gene059440:CDS |
| TGTGAAAGTTTAGAGACATT+AGG | 0.362670 | 2.3:+25560408 | MS.gene059440:CDS |
| GGAGAAATACCAGGCACTTT+GGG | 0.369186 | 2.3:+25561533 | MS.gene059440:CDS |
| CTTCATCAGAACCGATTCTC+AGG | 0.372778 | 2.3:+25561224 | MS.gene059440:CDS |
| AAGATAGTGAGCATTGTATC+TGG | 0.375154 | 2.3:+25561977 | MS.gene059440:CDS |
| GGGTTTATTAGCCCTGAAAT+TGG | 0.375937 | 2.3:+25561245 | MS.gene059440:CDS |
| CGGCTAACTGATTTGGAGCT+TGG | 0.376153 | 2.3:+25561566 | MS.gene059440:CDS |
| GGTGAGCTTCCTCCTGAGAT+TGG | 0.377990 | 2.3:+25560525 | MS.gene059440:CDS |
| AACTATTACTTTCCAAAAGA+AGG | 0.385970 | 2.3:+25562118 | MS.gene059440:CDS |
| CTTTCAGAAAACCATTTGAT+TGG | 0.387490 | 2.3:+25560720 | MS.gene059440:CDS |
| GCAATGACCTCTCTCATTGT+AGG | 0.392083 | 2.3:-25563474 | None:intergenic |
| GTCAACTTCGGAATTTAGTT+AGG | 0.395183 | 2.3:+25561267 | MS.gene059440:CDS |
| GGTATGCTTCCAAATTCAAT+TGG | 0.395921 | 2.3:+25561461 | MS.gene059440:CDS |
| TTGCATCAAAATTCATTGAT+TGG | 0.396275 | 2.3:+25560576 | MS.gene059440:CDS |
| ATTTATAGCAATAACTTAAC+CGG | 0.396748 | 2.3:+25560288 | MS.gene059440:CDS |
| CAAAGGAGCTTGGAAATTTG+AGG | 0.396841 | 2.3:+25560823 | MS.gene059440:CDS |
| CTGATTCAACTCCATGCAAT+TGG | 0.400059 | 2.3:+25559932 | MS.gene059440:CDS |
| AGGCGGAGAAGGAACGAGTA+TGG | 0.400716 | 2.3:+25562279 | MS.gene059440:CDS |
| GGAACAATTCCACCTGAGTT+AGG | 0.401869 | 2.3:+25560669 | MS.gene059440:CDS |
| AATGTCTCGTCTAACAGTTT+AGG | 0.403467 | 2.3:+25561365 | MS.gene059440:CDS |
| TCCTTAGCCTTGGATCAAAT+AGG | 0.406428 | 2.3:+25561072 | MS.gene059440:CDS |
| CTACTAATGTTTCCAATCTC+AGG | 0.407052 | 2.3:-25560537 | None:intergenic |
| GGTGAAATTCCTTCATCAAT+TGG | 0.408023 | 2.3:+25561752 | MS.gene059440:CDS |
| ATATCTCGATGAATGATTTG+AGG | 0.408184 | 2.3:-25562544 | None:intergenic |
| GATGCAAAGCAAGTAATTCA+AGG | 0.412372 | 2.3:-25560560 | None:intergenic |
| GGTACGATTCCTGATAGCTT+AGG | 0.417774 | 2.3:+25561680 | MS.gene059440:CDS |
| TGAAGTTCATACAGTTCAAC+AGG | 0.418213 | 2.3:-25561182 | None:intergenic |
| CTTCACTTACAATGATCTCT+TGG | 0.418722 | 2.3:+25562141 | MS.gene059440:CDS |
| TCTGCTGTTGCTGGATCATA+TGG | 0.419425 | 2.3:+25562664 | MS.gene059440:CDS |
| TGTGTCTTGCACTGATTCAT+TGG | 0.423366 | 2.3:+25559960 | MS.gene059440:CDS |
| CAGCTTCAATTCCTTAGCCT+TGG | 0.423732 | 2.3:+25561062 | MS.gene059440:CDS |
| CAAAAGAATGTGTATTGGAT+TGG | 0.424028 | 2.3:+25562455 | MS.gene059440:CDS |
| CGGATATGTCAAGAATAGTA+AGG | 0.424227 | 2.3:-25560992 | None:intergenic |
| TTGTCATTGAATAACCTAAC+TGG | 0.424332 | 2.3:+25560864 | MS.gene059440:CDS |
| GTTATAAGAGCAGGTTTGAA+TGG | 0.426502 | 2.3:+25560351 | MS.gene059440:CDS |
| TGGAGAAATACCAGGCACTT+TGG | 0.427534 | 2.3:+25561532 | MS.gene059440:CDS |
| TTATTTGATAATCAACTTGA+AGG | 0.430382 | 2.3:+25560936 | MS.gene059440:CDS |
| TACATGGAAAATGGAAGCCT+TGG | 0.433885 | 2.3:+25562412 | MS.gene059440:CDS |
| TTGAATGATAATCAACTTGT+CGG | 0.434654 | 2.3:+25561731 | MS.gene059440:CDS |
| ATTTGGAGCTTGGTGGCAAT+CGG | 0.440093 | 2.3:+25561576 | MS.gene059440:CDS |
| GTCACTTGTGCAGTTAATGT+TGG | 0.441688 | 2.3:+25561133 | MS.gene059440:CDS |
| CAGGCTCATGTTGGAGACTT+CGG | 0.442161 | 2.3:+25562601 | MS.gene059440:CDS |
| TAGGAATGATACCAATCAAA+TGG | 0.442970 | 2.3:-25560731 | None:intergenic |
| AATGATCTCTTGGAAGCTAC+TGG | 0.445635 | 2.3:+25562151 | MS.gene059440:CDS |
| CCAATGGAATTCTACCAGTT+AGG | 0.445652 | 2.3:-25560878 | None:intergenic |
| GTATCTAACAATAAGCTGAT+AGG | 0.449403 | 2.3:+25561803 | MS.gene059440:CDS |
| TTTCTGAATGTAGTTGTGTC+AGG | 0.451364 | 2.3:-25561833 | None:intergenic |
| TCCGAAGTTGACCAATTTCA+GGG | 0.452774 | 2.3:-25561256 | None:intergenic |
| GGTGATGTCCCGAAAGATAT+CGG | 0.455528 | 2.3:+25560597 | MS.gene059440:CDS |
| CTTGATAAACCGTCTTTCAC+TGG | 0.455694 | 2.3:-25561950 | None:intergenic |
| TTAGCACAGAATCAGTTAGT+AGG | 0.456826 | 2.3:+25560432 | MS.gene059440:CDS |
| AGCATTGTATCTGGAGTGAT+TGG | 0.460774 | 2.3:+25561986 | MS.gene059440:CDS |
| CTGAATGCACGAGGCGGAGA+AGG | 0.462055 | 2.3:+25562268 | MS.gene059440:CDS |
| AAGTTCAAAAGAATGTGTAT+TGG | 0.462237 | 2.3:+25562450 | MS.gene059440:CDS |
| TTGGAATATGACCCTGCAAA+TGG | 0.468564 | 2.3:-25560803 | None:intergenic |
| ATGTATACTAATCAGTTGAA+TGG | 0.471288 | 2.3:+25560648 | MS.gene059440:CDS |
| CACAACTACATTCAGAAAGA+TGG | 0.472057 | 2.3:+25561838 | MS.gene059440:CDS |
| CAACATGAGCCTGAAACATA+TGG | 0.472776 | 2.3:-25562591 | None:intergenic |
| GTTTCAAAATCTTGAACTCA+TGG | 0.474605 | 2.3:+25560902 | MS.gene059440:CDS |
| TCAAGTGGACATTCAGATGT+AGG | 0.474900 | 2.3:-25563543 | None:intergenic |
| GGCTAATAAACCCTGAGAAT+CGG | 0.477592 | 2.3:-25561235 | None:intergenic |
| AGAATATGCTTACACAATGA+AGG | 0.478520 | 2.3:+25563200 | MS.gene059440:intron |
| TCACTTGTGCAGTTAATGTT+GGG | 0.480385 | 2.3:+25561134 | MS.gene059440:CDS |
| AAGCTTAGAGTTATAAGAGC+AGG | 0.482503 | 2.3:+25560342 | MS.gene059440:CDS |
| GAAGGTGAAGTTATAGGAAG+AGG | 0.485081 | 2.3:+25562184 | MS.gene059440:CDS |
| ATGTAGGAGAGTTTGGTGAT+TGG | 0.486037 | 2.3:-25563527 | None:intergenic |
| GCTGCTGATATTCACAAAGA+TGG | 0.486773 | 2.3:-25561043 | None:intergenic |
| GTACGATTCCTGATAGCTTA+GGG | 0.486892 | 2.3:+25561681 | MS.gene059440:CDS |
| AAATCTCCGCAAGGAAGCTT+CGG | 0.487687 | 2.3:-25562303 | None:intergenic |
| TTTCAACACTCGGAAAGATC+AGG | 0.488075 | 2.3:+25562323 | MS.gene059440:CDS |
| CAGTGAAAGACGGTTTATCA+AGG | 0.494515 | 2.3:+25561951 | MS.gene059440:CDS |
| ACACAGTTTCCTAATTCGTC+CGG | 0.497272 | 2.3:-25561398 | None:intergenic |
| CAAAGAGCCTATTTGATCCA+AGG | 0.500692 | 2.3:-25561079 | None:intergenic |
| CTAACTGATTTGGAGCTTGG+TGG | 0.501299 | 2.3:+25561569 | MS.gene059440:CDS |
| ATATCCGAAAATAATCTTGT+CGG | 0.505038 | 2.3:+25561008 | MS.gene059440:CDS |
| CCTTGCTCCAATGGTTGCAC+TGG | 0.513009 | 2.3:-25563288 | None:intergenic |
| AAATCACCACCTTGCTCCAA+TGG | 0.513354 | 2.3:-25563297 | None:intergenic |
| GATAAATTTCCAATCTCAGA+AGG | 0.514153 | 2.3:-25561326 | None:intergenic |
| TTGTCAAATAATTCAGATGT+AGG | 0.514337 | 2.3:-25563357 | None:intergenic |
| TCTTCTCTTGTATCAATACA+TGG | 0.514383 | 2.3:+25562396 | MS.gene059440:CDS |
| TGCAATGTTGATTGATGCTA+GGG | 0.514808 | 2.3:+25563494 | MS.gene059440:CDS |
| TGATATTCACAAAGATGGAT+TGG | 0.516721 | 2.3:-25561038 | None:intergenic |
| CTTGCGGAGATTTCAACACT+CGG | 0.519327 | 2.3:+25562313 | MS.gene059440:CDS |
| GGTGTGATTCCACCTCATCT+TGG | 0.523727 | 2.3:+25560957 | MS.gene059440:CDS |
| CCTAACTGGTAGAATTCCAT+TGG | 0.527199 | 2.3:+25560878 | MS.gene059440:CDS |
| GCCTATTTGATCCAAGGCTA+AGG | 0.532851 | 2.3:-25561073 | None:intergenic |
| CTCATTGTAGGCCTATTAAG+TGG | 0.533622 | 2.3:-25563462 | None:intergenic |
| GAAGGCTATCGCGGTTGAAG+AGG | 0.534774 | 2.3:+25560619 | MS.gene059440:CDS |
| GTGATTTAGTGAGCTGGGTG+AGG | 0.538786 | 2.3:+25563313 | MS.gene059440:CDS |
| GGTCATATTCCAAAGGAGCT+TGG | 0.539645 | 2.3:+25560813 | MS.gene059440:CDS |
| ATAAGGTCTCCCAAAGTGCC+TGG | 0.542535 | 2.3:-25561542 | None:intergenic |
| TTGCAATGTTGATTGATGCT+AGG | 0.544448 | 2.3:+25563493 | MS.gene059440:CDS |
| TTAGTACAGTTTCCTAACTC+AGG | 0.546213 | 2.3:-25560681 | None:intergenic |
| TATAAAAGCTCTTCTTCCAA+AGG | 0.546356 | 2.3:+25563570 | MS.gene059440:CDS |
| AAGGTGGTGATTTAGTGAGC+TGG | 0.548290 | 2.3:+25563307 | MS.gene059440:CDS |
| CATATGTTTCAGGCTCATGT+TGG | 0.549460 | 2.3:+25562592 | MS.gene059440:CDS |
| GCCCTGAAATTGGTCAACTT+CGG | 0.549969 | 2.3:+25561255 | MS.gene059440:CDS |
| GGCAACTCACCAATTGATGA+AGG | 0.551293 | 2.3:-25561761 | None:intergenic |
| GACACACCAGTCCAATTGCA+TGG | 0.558122 | 2.3:-25559943 | None:intergenic |
| TCACACTCACTAATTTCTGA+AGG | 0.563210 | 2.3:-25560390 | None:intergenic |
| TAGGTCACCAGTGCAACCAT+TGG | 0.564892 | 2.3:+25563281 | MS.gene059440:CDS |
| GTCTCGTCTAACAGTTTAGG+TGG | 0.568980 | 2.3:+25561368 | MS.gene059440:CDS |
| CTATTTGAAAACCATTTGCA+GGG | 0.577655 | 2.3:+25560792 | MS.gene059440:CDS |
| TGCAGAGGCTTGATCTTAGA+CGG | 0.580332 | 2.3:+25561426 | MS.gene059440:CDS |
| TGATGAGATGAACCTAAAGA+TGG | 0.584435 | 2.3:-25561920 | None:intergenic |
| TTGCATGGAGTTGAATCAGA+AGG | 0.585213 | 2.3:-25559928 | None:intergenic |
| TCATATGGCTACATTGCCCC+AGG | 0.586589 | 2.3:+25562679 | MS.gene059440:CDS |
| TTCATCAGAACCGATTCTCA+GGG | 0.592336 | 2.3:+25561225 | MS.gene059440:CDS |
| AAACAAAAGAATCGCTGCGG+TGG | 0.595262 | 2.3:-25562060 | None:intergenic |
| GTACAGTTTCCTAACTCAGG+TGG | 0.599486 | 2.3:-25560678 | None:intergenic |
| AGGTGGTGATTTAGTGAGCT+GGG | 0.610738 | 2.3:+25563308 | MS.gene059440:CDS |
| TTCTTAACAGCTCCAAGATG+AGG | 0.613706 | 2.3:-25560969 | None:intergenic |
| TTAACAGCTCCAAGATGAGG+TGG | 0.614260 | 2.3:-25560966 | None:intergenic |
| GAAACTGTGTGATGCTGCAG+AGG | 0.617289 | 2.3:+25561411 | MS.gene059440:CDS |
| ACATTGCATGTTAAAAGACT+AGG | 0.618324 | 2.3:-25561782 | None:intergenic |
| CACTCGGAAAGATCAGGCAC+AGG | 0.620669 | 2.3:+25562329 | MS.gene059440:CDS |
| AGGAACATAGTGAAGCTGCA+TGG | 0.623893 | 2.3:+25562349 | MS.gene059440:CDS |
| AAGATATCGGAAGGCTATCG+CGG | 0.624637 | 2.3:+25560610 | MS.gene059440:CDS |
| AGTGAAAGACGGTTTATCAA+GGG | 0.626159 | 2.3:+25561952 | MS.gene059440:CDS |
| CATGCAAAGCCAGTGAAAGA+CGG | 0.627493 | 2.3:+25561941 | MS.gene059440:CDS |
| ATGTCCCGAAAGATATCGGA+AGG | 0.629291 | 2.3:+25560601 | MS.gene059440:CDS |
| TGCTGGAACTAGTAACTGGT+AGG | 0.630847 | 2.3:+25563262 | MS.gene059440:CDS |
| AACAATGGTTTGTGCCGTGT+AGG | 0.632540 | 2.3:+25561881 | MS.gene059440:CDS |
| TGGAGAACTAACATCACTTG+AGG | 0.633179 | 2.3:+25560257 | MS.gene059440:CDS |
| ATAAATTTCCAATCTCAGAA+GGG | 0.634945 | 2.3:-25561325 | None:intergenic |
| CCAGTGCAACCATTGGAGCA+AGG | 0.635357 | 2.3:+25563288 | MS.gene059440:CDS |
| TCAACTCCATGCAATTGGAC+TGG | 0.636613 | 2.3:+25559937 | MS.gene059440:CDS |
| ATAGCTTTAGGAGCAGCAGA+AGG | 0.637187 | 2.3:+25562493 | MS.gene059440:CDS |
| TTTGCAGGGTCATATTCCAA+AGG | 0.639130 | 2.3:+25560806 | MS.gene059440:CDS |
| GTATATGTTGGACTATGATG+AGG | 0.640233 | 2.3:+25562035 | MS.gene059440:CDS |
| TCAAAATCTTGAACTCATGG+AGG | 0.641661 | 2.3:+25560905 | MS.gene059440:CDS |
| GTCAAGAAGCTGAATGCACG+AGG | 0.642537 | 2.3:+25562259 | MS.gene059440:CDS |
| CTAATGTTTCCAATCTCAGG+AGG | 0.648464 | 2.3:-25560534 | None:intergenic |
| GTTATAGGAAGAGGAGCTTG+TGG | 0.650312 | 2.3:+25562193 | MS.gene059440:CDS |
| TAATAGGCCTACAATGAGAG+AGG | 0.656864 | 2.3:+25563467 | MS.gene059440:CDS |
| ATGCTTTCTGGAGAAATACC+AGG | 0.659425 | 2.3:+25561524 | MS.gene059440:CDS |
| CGAGTGTTGAAATCTCCGCA+AGG | 0.666973 | 2.3:-25562312 | None:intergenic |
| GACAGTGATTAGTACCTACA+CGG | 0.668585 | 2.3:-25561895 | None:intergenic |
| TATAAAGCTGTTATGAACGA+TGG | 0.669174 | 2.3:+25562223 | MS.gene059440:CDS |
| AAGAAGCTGAATGCACGAGG+CGG | 0.690932 | 2.3:+25562262 | MS.gene059440:CDS |
| TATGGACCGAAGCTTCCTTG+CGG | 0.705158 | 2.3:+25562297 | MS.gene059440:CDS |
| GTGCAACCATTGGAGCAAGG+TGG | 0.722058 | 2.3:+25563291 | MS.gene059440:CDS |
| GTTCTGATGAAGCTCGAGCG+CGG | 0.727335 | 2.3:-25561213 | None:intergenic |
| TTGAAACAAAAGAATCGCTG+CGG | 0.730871 | 2.3:-25562063 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAGATATAAAATAGCTTT+AGG | + | chr2.3:25562481-25562500 | MS.gene059440:CDS | 15.0% |
| !! | TTATTACAGTTATCAAAAAA+AGG | - | chr2.3:25560108-25560127 | None:intergenic | 15.0% |
| !!! | AACTTACTAATTTGATTTTA+TGG | + | chr2.3:25560487-25560506 | MS.gene059440:CDS | 15.0% |
| !!! | GTTCTAACAATTTTAAATTA+CGG | + | chr2.3:25562955-25562974 | MS.gene059440:intron | 15.0% |
| !! | AAAATTGTGAAAAATCAACT+TGG | - | chr2.3:25562871-25562890 | None:intergenic | 20.0% |
| !! | ATACTTAAGAAAACATATCA+AGG | + | chr2.3:25562793-25562812 | MS.gene059440:intron | 20.0% |
| !! | ATTTATAGCAATAACTTAAC+CGG | + | chr2.3:25560288-25560307 | MS.gene059440:CDS | 20.0% |
| !! | TAATATTGTGCTAAACATTA+AGG | - | chr2.3:25562846-25562865 | None:intergenic | 20.0% |
| !! | TACTTAAGAAAACATATCAA+GGG | + | chr2.3:25562794-25562813 | MS.gene059440:intron | 20.0% |
| !! | TTAATCATGATTCTAAATTG+TGG | - | chr2.3:25563130-25563149 | None:intergenic | 20.0% |
| !!! | CATTTTATAAAAGTGAACAA+AGG | - | chr2.3:25562753-25562772 | None:intergenic | 20.0% |
| !!! | TTATTTGATAATCAACTTGA+AGG | + | chr2.3:25560936-25560955 | MS.gene059440:CDS | 20.0% |
| !!! | TTTTCATAGTTTGTATATGT+TGG | + | chr2.3:25562023-25562042 | MS.gene059440:CDS | 20.0% |
| ! | AACTATTACTTTCCAAAAGA+AGG | + | chr2.3:25562118-25562137 | MS.gene059440:CDS | 25.0% |
| ! | AAGTTCAAAAGAATGTGTAT+TGG | + | chr2.3:25562450-25562469 | MS.gene059440:CDS | 25.0% |
| ! | AATTGGAAATCTTGTGAATT+TGG | + | chr2.3:25561478-25561497 | MS.gene059440:CDS | 25.0% |
| ! | ACAAGATTTCCAATTGAATT+TGG | - | chr2.3:25561473-25561492 | None:intergenic | 25.0% |
| ! | AGATTCAACTCAACTAAATA+TGG | - | chr2.3:25560051-25560070 | None:intergenic | 25.0% |
| ! | ATAAATTTCCAATCTCAGAA+GGG | - | chr2.3:25561328-25561347 | None:intergenic | 25.0% |
| ! | ATATCCGAAAATAATCTTGT+CGG | + | chr2.3:25561008-25561027 | MS.gene059440:CDS | 25.0% |
| ! | ATGTATACTAATCAGTTGAA+TGG | + | chr2.3:25560648-25560667 | MS.gene059440:CDS | 25.0% |
| ! | CTTTGTGAAAATTACATGTA+TGG | + | chr2.3:25560216-25560235 | MS.gene059440:intron | 25.0% |
| ! | TACGAATAAGTTCAATACAA+AGG | + | chr2.3:25562702-25562721 | MS.gene059440:intron | 25.0% |
| ! | TCAAAAAAAGGTTCAGAAAT+TGG | - | chr2.3:25560096-25560115 | None:intergenic | 25.0% |
| ! | TGATAACTGTAATAAACTTG+AGG | + | chr2.3:25560113-25560132 | MS.gene059440:intron | 25.0% |
| ! | TTCCAAATAAGAGATAGAAA+TGG | - | chr2.3:25560171-25560190 | None:intergenic | 25.0% |
| ! | TTGAATGATAATCAACTTGT+CGG | + | chr2.3:25561731-25561750 | MS.gene059440:CDS | 25.0% |
| ! | TTGCATCAAAATTCATTGAT+TGG | + | chr2.3:25560576-25560595 | MS.gene059440:CDS | 25.0% |
| ! | TTGTATCAATACATGGAAAA+TGG | + | chr2.3:25562403-25562422 | MS.gene059440:CDS | 25.0% |
| ! | TTGTCAAATAATTCAGATGT+AGG | - | chr2.3:25563360-25563379 | None:intergenic | 25.0% |
| !! | AAATGTGACATCTATAGTTT+TGG | + | chr2.3:25563231-25563250 | MS.gene059440:CDS | 25.0% |
| !! | AATGTGACATCTATAGTTTT+GGG | + | chr2.3:25563232-25563251 | MS.gene059440:CDS | 25.0% |
| !! | CATACATGTAATTTTCACAA+AGG | - | chr2.3:25560218-25560237 | None:intergenic | 25.0% |
| !! | CATCAAAACCTTTTATATTG+CGG | - | chr2.3:25563000-25563019 | None:intergenic | 25.0% |
| !! | TTCAACTTACTGATTGATTT+CGG | - | chr2.3:25560321-25560340 | None:intergenic | 25.0% |
| !! | TTTTAGACCTTTGTACTAAT+AGG | + | chr2.3:25560136-25560155 | MS.gene059440:intron | 25.0% |
| !!! | TTGTCAGATAATCATTTTTC+TGG | + | chr2.3:25561296-25561315 | MS.gene059440:CDS | 25.0% |
| AACACATGACCTCAATATAT+AGG | + | chr2.3:25563062-25563081 | MS.gene059440:intron | 30.0% | |
| ACATTGCATGTTAAAAGACT+AGG | - | chr2.3:25561785-25561804 | None:intergenic | 30.0% | |
| AGAATATGCTTACACAATGA+AGG | + | chr2.3:25563200-25563219 | MS.gene059440:intron | 30.0% | |
| ATATCTCGATGAATGATTTG+AGG | - | chr2.3:25562547-25562566 | None:intergenic | 30.0% | |
| CAAAAGAATGTGTATTGGAT+TGG | + | chr2.3:25562455-25562474 | MS.gene059440:CDS | 30.0% | |
| CAGATAACAATCTTGTTAAC+TGG | + | chr2.3:25559902-25559921 | MS.gene059440:CDS | 30.0% | |
| CTATTTGAAAACCATTTGCA+GGG | + | chr2.3:25560792-25560811 | MS.gene059440:CDS | 30.0% | |
| CTTTCAGAAAACCATTTGAT+TGG | + | chr2.3:25560720-25560739 | MS.gene059440:CDS | 30.0% | |
| CTTTCCAAAAATTTCATCTC+TGG | + | chr2.3:25560069-25560088 | MS.gene059440:intron | 30.0% | |
| GACCATTTCTATCTCTTATT+TGG | + | chr2.3:25560166-25560185 | MS.gene059440:intron | 30.0% | |
| GATAAATTTCCAATCTCAGA+AGG | - | chr2.3:25561329-25561348 | None:intergenic | 30.0% | |
| GTATCTAACAATAAGCTGAT+AGG | + | chr2.3:25561803-25561822 | MS.gene059440:CDS | 30.0% | |
| GTGAAAGTTTAGAGACATTA+GGG | + | chr2.3:25560409-25560428 | MS.gene059440:CDS | 30.0% | |
| GTTTCAAAATCTTGAACTCA+TGG | + | chr2.3:25560902-25560921 | MS.gene059440:CDS | 30.0% | |
| TAACTGCAACCTATATATTG+AGG | - | chr2.3:25563074-25563093 | None:intergenic | 30.0% | |
| TAGGAATGATACCAATCAAA+TGG | - | chr2.3:25560734-25560753 | None:intergenic | 30.0% | |
| TATAAAGCTGTTATGAACGA+TGG | + | chr2.3:25562223-25562242 | MS.gene059440:CDS | 30.0% | |
| TATGGAAGGTTACATATAGT+AGG | - | chr2.3:25560033-25560052 | None:intergenic | 30.0% | |
| TATTGAACTTATTCGTACCT+GGG | - | chr2.3:25562699-25562718 | None:intergenic | 30.0% | |
| TCAACTCAACTAAATATGGA+AGG | - | chr2.3:25560047-25560066 | None:intergenic | 30.0% | |
| TCTTCTCTTGTATCAATACA+TGG | + | chr2.3:25562396-25562415 | MS.gene059440:CDS | 30.0% | |
| TGATATTCACAAAGATGGAT+TGG | - | chr2.3:25561041-25561060 | None:intergenic | 30.0% | |
| TGTGAAAGTTTAGAGACATT+AGG | + | chr2.3:25560408-25560427 | MS.gene059440:CDS | 30.0% | |
| TGTGCTAAACATTAAGGTAA+TGG | - | chr2.3:25562840-25562859 | None:intergenic | 30.0% | |
| TTGTCATTGAATAACCTAAC+TGG | + | chr2.3:25560864-25560883 | MS.gene059440:CDS | 30.0% | |
| ! | CATACCGACAAGATTATTTT+CGG | - | chr2.3:25561015-25561034 | None:intergenic | 30.0% |
| ! | GAGCTTTTATATTCTTCAAG+TGG | - | chr2.3:25563561-25563580 | None:intergenic | 30.0% |
| ! | TTATGGCAAAACTCTTTTTC+TGG | + | chr2.3:25560504-25560523 | MS.gene059440:CDS | 30.0% |
| ! | TTGAATGAAGTTTTTCTCCA+AGG | - | chr2.3:25562432-25562451 | None:intergenic | 30.0% |
| ! | TTTTCAGAAGGTGAAGTTAT+AGG | + | chr2.3:25562178-25562197 | MS.gene059440:CDS | 30.0% |
| !! | ATGTGACATCTATAGTTTTG+GGG | + | chr2.3:25563233-25563252 | MS.gene059440:CDS | 30.0% |
| !! | TTGCAAGTTTTCAAGCTATA+AGG | - | chr2.3:25561113-25561132 | None:intergenic | 30.0% |
| !!! | ATGGACTTGACGAATTTTTT+GGG | + | chr2.3:25561857-25561876 | MS.gene059440:CDS | 30.0% |
| !!! | TCAAGATTTTGAAACTCCAA+TGG | - | chr2.3:25560897-25560916 | None:intergenic | 30.0% |
| AACTACCAGAGAGATTAAAG+TGG | - | chr2.3:25560005-25560024 | None:intergenic | 35.0% | |
| AAGCTTAGAGTTATAAGAGC+AGG | + | chr2.3:25560342-25560361 | MS.gene059440:CDS | 35.0% | |
| AATCACTGTCATCCATCTTT+AGG | + | chr2.3:25561908-25561927 | MS.gene059440:CDS | 35.0% | |
| AATGGTGTCCGCAATATAAA+AGG | + | chr2.3:25562989-25563008 | MS.gene059440:intron | 35.0% | |
| AATGTCTCGTCTAACAGTTT+AGG | + | chr2.3:25561365-25561384 | MS.gene059440:CDS | 35.0% | |
| AGTGAAAGACGGTTTATCAA+GGG | + | chr2.3:25561952-25561971 | MS.gene059440:CDS | 35.0% | |
| ATGATATCGTGGAATAATGC+AGG | - | chr2.3:25562934-25562953 | None:intergenic | 35.0% | |
| ATTGAACTTATTCGTACCTG+GGG | - | chr2.3:25562698-25562717 | None:intergenic | 35.0% | |
| CAAGTTCATCTCCACTTAAT+AGG | + | chr2.3:25563451-25563470 | MS.gene059440:CDS | 35.0% | |
| CACAACTACATTCAGAAAGA+TGG | + | chr2.3:25561838-25561857 | MS.gene059440:CDS | 35.0% | |
| CATGAAGCCTATTAGTACAA+AGG | - | chr2.3:25560146-25560165 | None:intergenic | 35.0% | |
| CCTATTTGAAAACCATTTGC+AGG | + | chr2.3:25560791-25560810 | MS.gene059440:CDS | 35.0% | |
| CGGATATGTCAAGAATAGTA+AGG | - | chr2.3:25560995-25561014 | None:intergenic | 35.0% | |
| CTACTAATGTTTCCAATCTC+AGG | - | chr2.3:25560540-25560559 | None:intergenic | 35.0% | |
| CTTAGACGGAATAAGTTTAC+TGG | + | chr2.3:25561440-25561459 | MS.gene059440:CDS | 35.0% | |
| CTTCACTTACAATGATCTCT+TGG | + | chr2.3:25562141-25562160 | MS.gene059440:CDS | 35.0% | |
| CTTTACCACTTTAATCTCTC+TGG | + | chr2.3:25559997-25560016 | MS.gene059440:intron | 35.0% | |
| CTTTGTACTAATAGGCTTCA+TGG | + | chr2.3:25560144-25560163 | MS.gene059440:intron | 35.0% | |
| GAGATTTGACCTAACTCTTT+AGG | - | chr2.3:25560753-25560772 | None:intergenic | 35.0% | |
| GATGCAAAGCAAGTAATTCA+AGG | - | chr2.3:25560563-25560582 | None:intergenic | 35.0% | |
| GGTATCATTCCTAAAGAGTT+AGG | + | chr2.3:25560741-25560760 | MS.gene059440:CDS | 35.0% | |
| GGTATGCTTCCAAATTCAAT+TGG | + | chr2.3:25561461-25561480 | MS.gene059440:CDS | 35.0% | |
| GGTGAAATTCCAAATGAGAT+TGG | + | chr2.3:25560237-25560256 | MS.gene059440:intron | 35.0% | |
| GGTGAAATTCCTTCATCAAT+TGG | + | chr2.3:25561752-25561771 | MS.gene059440:CDS | 35.0% | |
| GTATATGTTGGACTATGATG+AGG | + | chr2.3:25562035-25562054 | MS.gene059440:CDS | 35.0% | |
| GTATTGAACTTATTCGTACC+TGG | - | chr2.3:25562700-25562719 | None:intergenic | 35.0% | |
| GTCAACTTCGGAATTTAGTT+AGG | + | chr2.3:25561267-25561286 | MS.gene059440:CDS | 35.0% | |
| GTTATAAGAGCAGGTTTGAA+TGG | + | chr2.3:25560351-25560370 | MS.gene059440:CDS | 35.0% | |
| GTTTCTGATAACATGCTTTC+TGG | + | chr2.3:25561512-25561531 | MS.gene059440:CDS | 35.0% | |
| TCAAAATCTTGAACTCATGG+AGG | + | chr2.3:25560905-25560924 | MS.gene059440:CDS | 35.0% | |
| TCACACTCACTAATTTCTGA+AGG | - | chr2.3:25560393-25560412 | None:intergenic | 35.0% | |
| TCACTTGTGCAGTTAATGTT+GGG | + | chr2.3:25561134-25561153 | MS.gene059440:CDS | 35.0% | |
| TGAAGTTCATACAGTTCAAC+AGG | - | chr2.3:25561185-25561204 | None:intergenic | 35.0% | |
| TGATGAGATGAACCTAAAGA+TGG | - | chr2.3:25561923-25561942 | None:intergenic | 35.0% | |
| TGCATTATTCCACGATATCA+TGG | + | chr2.3:25562933-25562952 | MS.gene059440:intron | 35.0% | |
| TGTCTATACAGTCGAAATTG+TGG | - | chr2.3:25563043-25563062 | None:intergenic | 35.0% | |
| TTAGCACAGAATCAGTTAGT+AGG | + | chr2.3:25560432-25560451 | MS.gene059440:CDS | 35.0% | |
| TTAGTACAGTTTCCTAACTC+AGG | - | chr2.3:25560684-25560703 | None:intergenic | 35.0% | |
| TTGAAACAAAAGAATCGCTG+CGG | - | chr2.3:25562066-25562085 | None:intergenic | 35.0% | |
| TTGAGTCACAACAATCTTTC+TGG | + | chr2.3:25561659-25561678 | MS.gene059440:CDS | 35.0% | |
| TTGTTAGAACCATGATATCG+TGG | - | chr2.3:25562945-25562964 | None:intergenic | 35.0% | |
| TTTCTGAATGTAGTTGTGTC+AGG | - | chr2.3:25561836-25561855 | None:intergenic | 35.0% | |
| TTTGCTTGACCATATGTTTC+AGG | + | chr2.3:25562582-25562601 | MS.gene059440:CDS | 35.0% | |
| ! | AAGATAGTGAGCATTGTATC+TGG | + | chr2.3:25561977-25561996 | MS.gene059440:CDS | 35.0% |
| ! | AGGACGAATCTCTTTTCATT+TGG | + | chr2.3:25561604-25561623 | MS.gene059440:CDS | 35.0% |
| ! | CCTGCAAATGGTTTTCAAAT+AGG | - | chr2.3:25560794-25560813 | None:intergenic | 35.0% |
| ! | GACGAATCTCTTTTCATTTG+GGG | + | chr2.3:25561606-25561625 | MS.gene059440:CDS | 35.0% |
| ! | GATTGATTTCGGAATGATTC+CGG | - | chr2.3:25560310-25560329 | None:intergenic | 35.0% |
| ! | GGACGAATCTCTTTTCATTT+GGG | + | chr2.3:25561605-25561624 | MS.gene059440:CDS | 35.0% |
| ! | GTTAGTTCTCCAATCTCATT+TGG | - | chr2.3:25560249-25560268 | None:intergenic | 35.0% |
| ! | GTTTTCAAATAGGTGAAGCA+AGG | - | chr2.3:25560784-25560803 | None:intergenic | 35.0% |
| ! | TGCAATGTTGATTGATGCTA+GGG | + | chr2.3:25563494-25563513 | MS.gene059440:CDS | 35.0% |
| ! | TGGACCAGAGATGAAATTTT+TGG | - | chr2.3:25560076-25560095 | None:intergenic | 35.0% |
| ! | TTGCAATGTTGATTGATGCT+AGG | + | chr2.3:25563493-25563512 | MS.gene059440:CDS | 35.0% |
| ! | TTGTAAGTGAAGCCTTCTTT+TGG | - | chr2.3:25562133-25562152 | None:intergenic | 35.0% |
| !! | AGGTTTTGATGTCGTCTTAA+TGG | + | chr2.3:25563009-25563028 | MS.gene059440:intron | 35.0% |
| !! | GCTACTGGAAATTTTTCAGA+AGG | + | chr2.3:25562166-25562185 | MS.gene059440:CDS | 35.0% |
| !!! | ACGAATTTTTTGGGGAACAA+TGG | + | chr2.3:25561866-25561885 | MS.gene059440:CDS | 35.0% |
| !!! | AGGTAATGGAAATTTTCTGC+TGG | - | chr2.3:25562826-25562845 | None:intergenic | 35.0% |
| !!! | GATGGACTTGACGAATTTTT+TGG | + | chr2.3:25561856-25561875 | MS.gene059440:CDS | 35.0% |
| !!! | GCATGGATTTTGTTTTCATG+AGG | + | chr2.3:25562366-25562385 | MS.gene059440:CDS | 35.0% |
| !!! | TGAAGCTTTTGAAGCTCTTT+CGG | - | chr2.3:25560465-25560484 | None:intergenic | 35.0% |
| !!! | TGGACTTGACGAATTTTTTG+GGG | + | chr2.3:25561858-25561877 | MS.gene059440:CDS | 35.0% |
| AAATCTATGTCTGCTGTTGC+TGG | + | chr2.3:25562655-25562674 | MS.gene059440:CDS | 40.0% | |
| AATGATCTCTTGGAAGCTAC+TGG | + | chr2.3:25562151-25562170 | MS.gene059440:CDS | 40.0% | |
| ACACAGTTTCCTAATTCGTC+CGG | - | chr2.3:25561401-25561420 | None:intergenic | 40.0% | |
| AGCAACAATTAGAATGCAGC+AGG | - | chr2.3:25563162-25563181 | None:intergenic | 40.0% | |
| ATAGCCTTCCGATATCTTTC+GGG | - | chr2.3:25560608-25560627 | None:intergenic | 40.0% | |
| ATTACGGTCCATAACTGCAA+TGG | + | chr2.3:25562971-25562990 | MS.gene059440:intron | 40.0% | |
| CAAAGAGCCTATTTGATCCA+AGG | - | chr2.3:25561082-25561101 | None:intergenic | 40.0% | |
| CAAAGGAGCTTGGAAATTTG+AGG | + | chr2.3:25560823-25560842 | MS.gene059440:CDS | 40.0% | |
| CAACATGAGCCTGAAACATA+TGG | - | chr2.3:25562594-25562613 | None:intergenic | 40.0% | |
| CAGTGAAAGACGGTTTATCA+AGG | + | chr2.3:25561951-25561970 | MS.gene059440:CDS | 40.0% | |
| CATATGTTTCAGGCTCATGT+TGG | + | chr2.3:25562592-25562611 | MS.gene059440:CDS | 40.0% | |
| CATTCAGATGTAGGAGAGTT+TGG | - | chr2.3:25563537-25563556 | None:intergenic | 40.0% | |
| CCAAATCAGTTAGCCGAATA+AGG | - | chr2.3:25561562-25561581 | None:intergenic | 40.0% | |
| CCAATGGAATTCTACCAGTT+AGG | - | chr2.3:25560881-25560900 | None:intergenic | 40.0% | |
| CCTAACTGGTAGAATTCCAT+TGG | + | chr2.3:25560878-25560897 | MS.gene059440:CDS | 40.0% | |
| CCTTATTCGGCTAACTGATT+TGG | + | chr2.3:25561559-25561578 | MS.gene059440:CDS | 40.0% | |
| CTAATGTTTCCAATCTCAGG+AGG | - | chr2.3:25560537-25560556 | None:intergenic | 40.0% | |
| CTCAAATTTCCAAGCTCCTT+TGG | - | chr2.3:25560825-25560844 | None:intergenic | 40.0% | |
| CTCATTGTAGGCCTATTAAG+TGG | - | chr2.3:25563465-25563484 | None:intergenic | 40.0% | |
| CTGATTCAACTCCATGCAAT+TGG | + | chr2.3:25559932-25559951 | MS.gene059440:CDS | 40.0% | |
| CTTGATAAACCGTCTTTCAC+TGG | - | chr2.3:25561953-25561972 | None:intergenic | 40.0% | |
| CTTGGATCAAATAGGCTCTT+TGG | + | chr2.3:25561080-25561099 | MS.gene059440:CDS | 40.0% | |
| GAAGGTGAAGTTATAGGAAG+AGG | + | chr2.3:25562184-25562203 | MS.gene059440:CDS | 40.0% | |
| GACAGTGATTAGTACCTACA+CGG | - | chr2.3:25561898-25561917 | None:intergenic | 40.0% | |
| GATAGCCTTCCGATATCTTT+CGG | - | chr2.3:25560609-25560628 | None:intergenic | 40.0% | |
| GCTGCTGATATTCACAAAGA+TGG | - | chr2.3:25561046-25561065 | None:intergenic | 40.0% | |
| GGCTAATAAACCCTGAGAAT+CGG | - | chr2.3:25561238-25561257 | None:intergenic | 40.0% | |
| GGGTTTATTAGCCCTGAAAT+TGG | + | chr2.3:25561245-25561264 | MS.gene059440:CDS | 40.0% | |
| GTACGATTCCTGATAGCTTA+GGG | + | chr2.3:25561681-25561700 | MS.gene059440:CDS | 40.0% | |
| GTCACTTGTGCAGTTAATGT+TGG | + | chr2.3:25561133-25561152 | MS.gene059440:CDS | 40.0% | |
| TAATAGGCCTACAATGAGAG+AGG | + | chr2.3:25563467-25563486 | MS.gene059440:CDS | 40.0% | |
| TACATGGAAAATGGAAGCCT+TGG | + | chr2.3:25562412-25562431 | MS.gene059440:CDS | 40.0% | |
| TCAAGTGGACATTCAGATGT+AGG | - | chr2.3:25563546-25563565 | None:intergenic | 40.0% | |
| TCCGAAGTTGACCAATTTCA+GGG | - | chr2.3:25561259-25561278 | None:intergenic | 40.0% | |
| TGGAGAACTAACATCACTTG+AGG | + | chr2.3:25560257-25560276 | MS.gene059440:CDS | 40.0% | |
| TTCCGAAGTTGACCAATTTC+AGG | - | chr2.3:25561260-25561279 | None:intergenic | 40.0% | |
| TTCTTAACAGCTCCAAGATG+AGG | - | chr2.3:25560972-25560991 | None:intergenic | 40.0% | |
| TTGCATGGAGTTGAATCAGA+AGG | - | chr2.3:25559931-25559950 | None:intergenic | 40.0% | |
| TTGGAATATGACCCTGCAAA+TGG | - | chr2.3:25560806-25560825 | None:intergenic | 40.0% | |
| TTTCAACACTCGGAAAGATC+AGG | + | chr2.3:25562323-25562342 | MS.gene059440:CDS | 40.0% | |
| TTTGCAGGGTCATATTCCAA+AGG | + | chr2.3:25560806-25560825 | MS.gene059440:CDS | 40.0% | |
| ! | AGCATTGTATCTGGAGTGAT+TGG | + | chr2.3:25561986-25562005 | MS.gene059440:CDS | 40.0% |
| ! | ATGCTTTCTGGAGAAATACC+AGG | + | chr2.3:25561524-25561543 | MS.gene059440:CDS | 40.0% |
| ! | ATGTAGGAGAGTTTGGTGAT+TGG | - | chr2.3:25563530-25563549 | None:intergenic | 40.0% |
| ! | GTTTTGCTGGAACTAGTAAC+TGG | + | chr2.3:25563258-25563277 | MS.gene059440:CDS | 40.0% |
| ! | TTCATCAGAACCGATTCTCA+GGG | + | chr2.3:25561225-25561244 | MS.gene059440:CDS | 40.0% |
| ! | TTGGGAGACAATCTTTTGAC+AGG | + | chr2.3:25561152-25561171 | MS.gene059440:CDS | 40.0% |
| !! | CAGTTTAGGTGGAAGTATTC+CGG | + | chr2.3:25561379-25561398 | MS.gene059440:CDS | 40.0% |
| !! | TCCTTAGCCTTGGATCAAAT+AGG | + | chr2.3:25561072-25561091 | MS.gene059440:CDS | 40.0% |
| !! | TGTGTCTTGCACTGATTCAT+TGG | + | chr2.3:25559960-25559979 | MS.gene059440:CDS | 40.0% |
| !!! | TAGTTTTGGGGTAGTTTTGC+TGG | + | chr2.3:25563245-25563264 | MS.gene059440:CDS | 40.0% |
| AAACAAAAGAATCGCTGCGG+TGG | - | chr2.3:25562063-25562082 | None:intergenic | 45.0% | |
| AAATCACCACCTTGCTCCAA+TGG | - | chr2.3:25563300-25563319 | None:intergenic | 45.0% | |
| AAATCTCCGCAAGGAAGCTT+CGG | - | chr2.3:25562306-25562325 | None:intergenic | 45.0% | |
| AAGATATCGGAAGGCTATCG+CGG | + | chr2.3:25560610-25560629 | MS.gene059440:CDS | 45.0% | |
| AAGGTGGTGATTTAGTGAGC+TGG | + | chr2.3:25563307-25563326 | MS.gene059440:CDS | 45.0% | |
| AGGAACATAGTGAAGCTGCA+TGG | + | chr2.3:25562349-25562368 | MS.gene059440:CDS | 45.0% | |
| AGGTGGTGATTTAGTGAGCT+GGG | + | chr2.3:25563308-25563327 | MS.gene059440:CDS | 45.0% | |
| ATGTCCCGAAAGATATCGGA+AGG | + | chr2.3:25560601-25560620 | MS.gene059440:CDS | 45.0% | |
| CAGCTTCAATTCCTTAGCCT+TGG | + | chr2.3:25561062-25561081 | MS.gene059440:CDS | 45.0% | |
| CATGCAAAGCCAGTGAAAGA+CGG | + | chr2.3:25561941-25561960 | MS.gene059440:CDS | 45.0% | |
| CTTGCGGAGATTTCAACACT+CGG | + | chr2.3:25562313-25562332 | MS.gene059440:CDS | 45.0% | |
| GCAATGACCTCTCTCATTGT+AGG | - | chr2.3:25563477-25563496 | None:intergenic | 45.0% | |
| GCAGGTTTGAATGGTCTTTC+AGG | + | chr2.3:25560360-25560379 | MS.gene059440:CDS | 45.0% | |
| GCCCTGAAATTGGTCAACTT+CGG | + | chr2.3:25561255-25561274 | MS.gene059440:CDS | 45.0% | |
| GCCTATTTGATCCAAGGCTA+AGG | - | chr2.3:25561076-25561095 | None:intergenic | 45.0% | |
| GGAACAATTCCACCTGAGTT+AGG | + | chr2.3:25560669-25560688 | MS.gene059440:CDS | 45.0% | |
| GGAGAAATACCAGGCACTTT+GGG | + | chr2.3:25561533-25561552 | MS.gene059440:CDS | 45.0% | |
| GGCAACTCACCAATTGATGA+AGG | - | chr2.3:25561764-25561783 | None:intergenic | 45.0% | |
| GGTACGATTCCTGATAGCTT+AGG | + | chr2.3:25561680-25561699 | MS.gene059440:CDS | 45.0% | |
| GGTCATATTCCAAAGGAGCT+TGG | + | chr2.3:25560813-25560832 | MS.gene059440:CDS | 45.0% | |
| GGTGATGTCCCGAAAGATAT+CGG | + | chr2.3:25560597-25560616 | MS.gene059440:CDS | 45.0% | |
| GTACAGTTTCCTAACTCAGG+TGG | - | chr2.3:25560681-25560700 | None:intergenic | 45.0% | |
| GTCTCGTCTAACAGTTTAGG+TGG | + | chr2.3:25561368-25561387 | MS.gene059440:CDS | 45.0% | |
| GTTATAGGAAGAGGAGCTTG+TGG | + | chr2.3:25562193-25562212 | MS.gene059440:CDS | 45.0% | |
| TCAACTCCATGCAATTGGAC+TGG | + | chr2.3:25559937-25559956 | MS.gene059440:CDS | 45.0% | |
| TCTGCTGTTGCTGGATCATA+TGG | + | chr2.3:25562664-25562683 | MS.gene059440:CDS | 45.0% | |
| TGCAGAGGCTTGATCTTAGA+CGG | + | chr2.3:25561426-25561445 | MS.gene059440:CDS | 45.0% | |
| TGCTGGAACTAGTAACTGGT+AGG | + | chr2.3:25563262-25563281 | MS.gene059440:CDS | 45.0% | |
| TGGAATAATGCAGGCTACTG+TGG | - | chr2.3:25562925-25562944 | None:intergenic | 45.0% | |
| TGGAGAAATACCAGGCACTT+TGG | + | chr2.3:25561532-25561551 | MS.gene059440:CDS | 45.0% | |
| TTAACAGCTCCAAGATGAGG+TGG | - | chr2.3:25560969-25560988 | None:intergenic | 45.0% | |
| ! | AACAATGGTTTGTGCCGTGT+AGG | + | chr2.3:25561881-25561900 | MS.gene059440:CDS | 45.0% |
| ! | ATTTGGAGCTTGGTGGCAAT+CGG | + | chr2.3:25561576-25561595 | MS.gene059440:CDS | 45.0% |
| ! | CTTCATCAGAACCGATTCTC+AGG | + | chr2.3:25561224-25561243 | MS.gene059440:CDS | 45.0% |
| ! | GCACTTTGGGAGACCTTATT+CGG | + | chr2.3:25561546-25561565 | MS.gene059440:CDS | 45.0% |
| !! | ATAGCTTTAGGAGCAGCAGA+AGG | + | chr2.3:25562493-25562512 | MS.gene059440:CDS | 45.0% |
| !! | CTAACTGATTTGGAGCTTGG+TGG | + | chr2.3:25561569-25561588 | MS.gene059440:CDS | 45.0% |
| !! | GGAAGTATTCCGGACGAATT+AGG | + | chr2.3:25561389-25561408 | MS.gene059440:CDS | 45.0% |
| !! | GGTTATCTCCCTTCTGAGAT+TGG | + | chr2.3:25561317-25561336 | MS.gene059440:CDS | 45.0% |
| AAGAAGCTGAATGCACGAGG+CGG | + | chr2.3:25562262-25562281 | MS.gene059440:CDS | 50.0% | |
| CAGGCTCATGTTGGAGACTT+CGG | + | chr2.3:25562601-25562620 | MS.gene059440:CDS | 50.0% | |
| GAAACTGTGTGATGCTGCAG+AGG | + | chr2.3:25561411-25561430 | MS.gene059440:CDS | 50.0% | |
| GACACACCAGTCCAATTGCA+TGG | - | chr2.3:25559946-25559965 | None:intergenic | 50.0% | |
| GGTGTGATTCCACCTCATCT+TGG | + | chr2.3:25560957-25560976 | MS.gene059440:CDS | 50.0% | |
| GTCAAGAAGCTGAATGCACG+AGG | + | chr2.3:25562259-25562278 | MS.gene059440:CDS | 50.0% | |
| GTGATTTAGTGAGCTGGGTG+AGG | + | chr2.3:25563313-25563332 | MS.gene059440:CDS | 50.0% | |
| TAGGTCACCAGTGCAACCAT+TGG | + | chr2.3:25563281-25563300 | MS.gene059440:CDS | 50.0% | |
| TATGGACCGAAGCTTCCTTG+CGG | + | chr2.3:25562297-25562316 | MS.gene059440:CDS | 50.0% | |
| TCATATGGCTACATTGCCCC+AGG | + | chr2.3:25562679-25562698 | MS.gene059440:CDS | 50.0% | |
| TGCAAGCTCCCTAAGCTATC+AGG | - | chr2.3:25561692-25561711 | None:intergenic | 50.0% | |
| TGCGGACACCATTGCAGTTA+TGG | - | chr2.3:25562982-25563001 | None:intergenic | 50.0% | |
| ! | ATAAGGTCTCCCAAAGTGCC+TGG | - | chr2.3:25561545-25561564 | None:intergenic | 50.0% |
| !! | CGAGTGTTGAAATCTCCGCA+AGG | - | chr2.3:25562315-25562334 | None:intergenic | 50.0% |
| !! | CGGCTAACTGATTTGGAGCT+TGG | + | chr2.3:25561566-25561585 | MS.gene059440:CDS | 50.0% |
| !! | CTTGGTGGCAATCGGTTTTC+AGG | + | chr2.3:25561584-25561603 | MS.gene059440:CDS | 50.0% |
| AGGCGGAGAAGGAACGAGTA+TGG | + | chr2.3:25562279-25562298 | MS.gene059440:CDS | 55.0% | |
| CACTCGGAAAGATCAGGCAC+AGG | + | chr2.3:25562329-25562348 | MS.gene059440:CDS | 55.0% | |
| CCAGTGCAACCATTGGAGCA+AGG | + | chr2.3:25563288-25563307 | MS.gene059440:CDS | 55.0% | |
| CCTTGCTCCAATGGTTGCAC+TGG | - | chr2.3:25563291-25563310 | None:intergenic | 55.0% | |
| GAAGGCTATCGCGGTTGAAG+AGG | + | chr2.3:25560619-25560638 | MS.gene059440:CDS | 55.0% | |
| GGTGAGCTTCCTCCTGAGAT+TGG | + | chr2.3:25560525-25560544 | MS.gene059440:CDS | 55.0% | |
| GTGCAACCATTGGAGCAAGG+TGG | + | chr2.3:25563291-25563310 | MS.gene059440:CDS | 55.0% | |
| GTTCTGATGAAGCTCGAGCG+CGG | - | chr2.3:25561216-25561235 | None:intergenic | 55.0% | |
| CTGAATGCACGAGGCGGAGA+AGG | + | chr2.3:25562268-25562287 | MS.gene059440:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 25559899 | 25563591 | 25559899 | ID=MS.gene059440 |
| chr2.3 | mRNA | 25559899 | 25563591 | 25559899 | ID=MS.gene059440.t1;Parent=MS.gene059440 |
| chr2.3 | exon | 25559899 | 25559981 | 25559899 | ID=MS.gene059440.t1.exon1;Parent=MS.gene059440.t1 |
| chr2.3 | CDS | 25559899 | 25559981 | 25559899 | ID=cds.MS.gene059440.t1;Parent=MS.gene059440.t1 |
| chr2.3 | exon | 25560255 | 25562700 | 25560255 | ID=MS.gene059440.t1.exon2;Parent=MS.gene059440.t1 |
| chr2.3 | CDS | 25560255 | 25562700 | 25560255 | ID=cds.MS.gene059440.t1;Parent=MS.gene059440.t1 |
| chr2.3 | exon | 25563202 | 25563591 | 25563202 | ID=MS.gene059440.t1.exon3;Parent=MS.gene059440.t1 |
| chr2.3 | CDS | 25563202 | 25563591 | 25563202 | ID=cds.MS.gene059440.t1;Parent=MS.gene059440.t1 |
| Gene Sequence |
| Protein sequence |
