Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38111.t1 | XP_003618084.1 | 98.8 | 164 | 2 | 0 | 1 | 164 | 1 | 164 | 7.60E-87 | 329.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38111.t1 | Q0IIJ0 | 53.3 | 150 | 68 | 2 | 9 | 157 | 6 | 154 | 1.0e-39 | 164.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38111.t1 | G7K0Q8 | 98.8 | 164 | 2 | 0 | 1 | 164 | 1 | 164 | 5.5e-87 | 329.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene38111.t1 | TR | GNAT |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene38111 | -0.801705 | 7.94E-49 | -1.69E-46 |
| MS.gene050759 | MS.gene38111 | -0.802463 | 5.54E-49 | -1.69E-46 |
| MS.gene051190 | MS.gene38111 | -0.829395 | 5.27E-55 | -1.69E-46 |
| MS.gene051279 | MS.gene38111 | -0.800954 | 1.13E-48 | -1.69E-46 |
| MS.gene051594 | MS.gene38111 | -0.810553 | 1.09E-50 | -1.69E-46 |
| MS.gene052463 | MS.gene38111 | -0.806294 | 8.82E-50 | -1.69E-46 |
| MS.gene052534 | MS.gene38111 | -0.812163 | 4.87E-51 | -1.69E-46 |
| MS.gene052674 | MS.gene38111 | -0.82243 | 2.38E-53 | -1.69E-46 |
| MS.gene052675 | MS.gene38111 | -0.829742 | 4.34E-55 | -1.69E-46 |
| MS.gene052677 | MS.gene38111 | -0.827262 | 1.72E-54 | -1.69E-46 |
| MS.gene05423 | MS.gene38111 | -0.801821 | 7.52E-49 | -1.69E-46 |
| MS.gene054291 | MS.gene38111 | 0.81493 | 1.20E-51 | -1.69E-46 |
| MS.gene055453 | MS.gene38111 | 0.818105 | 2.33E-52 | -1.69E-46 |
| MS.gene055455 | MS.gene38111 | 0.806727 | 7.15E-50 | -1.69E-46 |
| MS.gene056174 | MS.gene38111 | -0.810911 | 9.11E-51 | -1.69E-46 |
| MS.gene056779 | MS.gene38111 | -0.809166 | 2.16E-50 | -1.69E-46 |
| MS.gene059437 | MS.gene38111 | -0.800135 | 1.66E-48 | -1.69E-46 |
| MS.gene059440 | MS.gene38111 | -0.802315 | 5.95E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene95934 | MS.gene38111 | PPI |
| MS.gene51687 | MS.gene38111 | PPI |
| MS.gene009509 | MS.gene38111 | PPI |
| MS.gene51964 | MS.gene38111 | PPI |
| MS.gene92650 | MS.gene38111 | PPI |
| MS.gene51967 | MS.gene38111 | PPI |
| MS.gene38111 | MS.gene019081 | PPI |
| MS.gene63427 | MS.gene38111 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38111.t1 | MTR_5g098790 | 98.780 | 164 | 2 | 0 | 1 | 164 | 1 | 164 | 1.27e-120 | 337 |
| MS.gene38111.t1 | MTR_5g007400 | 27.632 | 152 | 87 | 3 | 14 | 142 | 17 | 168 | 6.38e-15 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38111.t1 | AT5G11340 | 78.049 | 164 | 36 | 0 | 1 | 164 | 1 | 164 | 2.43e-97 | 278 |
| MS.gene38111.t1 | AT5G16800 | 23.926 | 163 | 101 | 3 | 4 | 143 | 20 | 182 | 2.10e-12 | 63.2 |
| MS.gene38111.t1 | AT5G16800 | 23.926 | 163 | 101 | 3 | 4 | 143 | 20 | 182 | 3.91e-12 | 62.8 |
| MS.gene38111.t1 | AT5G16800 | 23.926 | 163 | 101 | 3 | 4 | 143 | 20 | 182 | 5.72e-12 | 62.4 |
Find 31 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATTTCTTATAAAAGTTAA+TGG | 0.199299 | 5.1:+79979428 | None:intergenic |
| TGATGTTTACGTAATAGTTC+TGG | 0.333615 | 5.1:+79979382 | None:intergenic |
| CTGAAATGTTATTTCTTTGT+TGG | 0.338231 | 5.1:+79979315 | None:intergenic |
| CGGGTTTACATCATGACTTT+AGG | 0.340929 | 5.1:-79979831 | MS.gene38111:CDS |
| AGAAGGAAGGCGGGCAAGTT+CGG | 0.365269 | 5.1:-79979851 | MS.gene38111:CDS |
| GAAGGAAGGCGGGCAAGTTC+GGG | 0.367625 | 5.1:-79979850 | MS.gene38111:CDS |
| TGAAATGTTATTTCTTTGTT+GGG | 0.378604 | 5.1:+79979316 | None:intergenic |
| TATTTGTCGTTGTAACGAAC+AGG | 0.385879 | 5.1:+79981780 | None:intergenic |
| CCTTACCGTGGACTTGGTAT+TGG | 0.408366 | 5.1:-79979798 | MS.gene38111:intron |
| TGTTATTTCTTTGTTGGGCT+AGG | 0.418834 | 5.1:+79979321 | None:intergenic |
| TTAGCGCCTTACCGTGGACT+TGG | 0.429752 | 5.1:-79979804 | MS.gene38111:CDS |
| TGATAGAAAAGAACCTAGTT+TGG | 0.435318 | 5.1:+79981725 | None:intergenic |
| GAAGTATCAATATCATTAGA+TGG | 0.453181 | 5.1:-79981855 | MS.gene38111:CDS |
| CGCCTTCCTTCTTCTCAAGC+CGG | 0.465600 | 5.1:+79979862 | None:intergenic |
| TGCATGCCGGCTTGAGAAGA+AGG | 0.476399 | 5.1:-79979868 | MS.gene38111:CDS |
| TCCGCTGATTTCACCAAACT+AGG | 0.503020 | 5.1:-79981738 | MS.gene38111:intron |
| TACTACAGTGACATTTGTGT+TGG | 0.528723 | 5.1:-79979897 | MS.gene38111:CDS |
| CGCGAAGCAAAACATTTCTG+AGG | 0.547039 | 5.1:-79979484 | MS.gene38111:CDS |
| GGCTTGAGAAGAAGGAAGGC+GGG | 0.549023 | 5.1:-79979860 | MS.gene38111:CDS |
| GAAGTAGAATCAATGGGAGC+TGG | 0.565209 | 5.1:-79981882 | None:intergenic |
| TTTGGGTTTATGCAGGAACA+AGG | 0.566199 | 5.1:-79979533 | MS.gene38111:intron |
| GTGTTGGCGCAATTGCATGC+CGG | 0.568057 | 5.1:-79979881 | MS.gene38111:CDS |
| TGCCGGCTTGAGAAGAAGGA+AGG | 0.583442 | 5.1:-79979864 | MS.gene38111:CDS |
| CTTGTGACAACATAACAGTC+TGG | 0.600627 | 5.1:+79979354 | None:intergenic |
| CCAATACCAAGTCCACGGTA+AGG | 0.611714 | 5.1:+79979798 | None:intergenic |
| CGGCTTGAGAAGAAGGAAGG+CGG | 0.620221 | 5.1:-79979861 | MS.gene38111:CDS |
| ATTTGTCGTTGTAACGAACA+GGG | 0.627678 | 5.1:+79981781 | None:intergenic |
| TCTTACCAATACCAAGTCCA+CGG | 0.630487 | 5.1:+79979793 | None:intergenic |
| ACCTAGTTTGGTGAAATCAG+CGG | 0.645414 | 5.1:+79981737 | None:intergenic |
| CAGACTGTTATGTTGTCACA+AGG | 0.649227 | 5.1:-79979353 | MS.gene38111:CDS |
| GTGACAACATAACAGTCTGG+TGG | 0.757743 | 5.1:+79979357 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTTCTTATAAAAGTTAA+TGG | + | chr5.1:79981768-79981787 | None:intergenic | 10.0% |
| !! | TAAATTAAAACACTTAAAAA+GGG | + | chr5.1:79980812-79980831 | None:intergenic | 10.0% |
| !! | TTAAATTAAAACACTTAAAA+AGG | + | chr5.1:79980813-79980832 | None:intergenic | 10.0% |
| !!! | ATTTTCATATATATAAGTTA+GGG | + | chr5.1:79980789-79980808 | None:intergenic | 10.0% |
| !! | AAGTATAATAATCAATCTTA+AGG | + | chr5.1:79981266-79981285 | None:intergenic | 15.0% |
| !! | ATTATTATAACAACAGAAAT+TGG | - | chr5.1:79980382-79980401 | MS.gene38111:intron | 15.0% |
| !! | TAAAAAAAAATCCTAAACAA+AGG | + | chr5.1:79979791-79979810 | None:intergenic | 15.0% |
| !!! | AGTTTTTTTAGTGAAATTTT+AGG | - | chr5.1:79979762-79979781 | MS.gene38111:intron | 15.0% |
| !!! | GATTTTCATATATATAAGTT+AGG | + | chr5.1:79980790-79980809 | None:intergenic | 15.0% |
| !!! | GTTTTTTTAGTGAAATTTTA+GGG | - | chr5.1:79979763-79979782 | MS.gene38111:intron | 15.0% |
| !!! | TTTTAAAATGAAAAGTTGTT+AGG | - | chr5.1:79979826-79979845 | MS.gene38111:CDS | 15.0% |
| !!! | TTTTCATATATATAAGTTAG+GGG | + | chr5.1:79980788-79980807 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTTTTCTTTCAG+AGG | - | chr5.1:79979875-79979894 | MS.gene38111:CDS | 15.0% |
| !! | ACATACAACAACATTAATAA+AGG | + | chr5.1:79981226-79981245 | None:intergenic | 20.0% |
| !! | AGAAAGATTTCAAAACAAAA+AGG | + | chr5.1:79980964-79980983 | None:intergenic | 20.0% |
| !! | AGAAATTTGATATGAATCTT+TGG | - | chr5.1:79981642-79981661 | MS.gene38111:intron | 20.0% |
| !! | ATAATAATCAATCTTAAGGT+TGG | + | chr5.1:79981262-79981281 | None:intergenic | 20.0% |
| !! | CAAATTGAAACAAATCATTA+TGG | + | chr5.1:79979739-79979758 | None:intergenic | 20.0% |
| !! | GAAATTTGATATGAATCTTT+GGG | - | chr5.1:79981643-79981662 | MS.gene38111:intron | 20.0% |
| !! | GAGTTTCTATCTAATTATTT+AGG | - | chr5.1:79980741-79980760 | MS.gene38111:intron | 20.0% |
| !! | TTAAAACATAGTGTATTCAT+TGG | - | chr5.1:79980031-79980050 | MS.gene38111:intron | 20.0% |
| !! | TTTCATATATATAAGTTAGG+GGG | + | chr5.1:79980787-79980806 | None:intergenic | 20.0% |
| !!! | AGAATATTAACCTTCTAAAA+TGG | + | chr5.1:79979677-79979696 | None:intergenic | 20.0% |
| !!! | CATGTATTTTATTTCATACT+AGG | - | chr5.1:79980161-79980180 | MS.gene38111:intron | 20.0% |
| !!! | TTTAAGTTTTAACAAGAACA+TGG | - | chr5.1:79980828-79980847 | MS.gene38111:intron | 20.0% |
| ! | AAAAATAAGCCAATCCAAAT+CGG | - | chr5.1:79979637-79979656 | MS.gene38111:intron | 25.0% |
| ! | TAGATAGCAAACTTAAAGAA+CGG | + | chr5.1:79981613-79981632 | None:intergenic | 25.0% |
| !! | GAAGTATCAATATCATTAGA+TGG | - | chr5.1:79979338-79979357 | MS.gene38111:CDS | 25.0% |
| !! | TTCAGTTTTTCATGATAACA+TGG | - | chr5.1:79981178-79981197 | MS.gene38111:intron | 25.0% |
| !! | TTCTGAAAAGACAGAAAAAA+GGG | + | chr5.1:79979996-79980015 | None:intergenic | 25.0% |
| !! | TTTTATGAGATGTGGATAAA+GGG | + | chr5.1:79981002-79981021 | None:intergenic | 25.0% |
| !! | TTTTTATGAGATGTGGATAA+AGG | + | chr5.1:79981003-79981022 | None:intergenic | 25.0% |
| !!! | CTGAAAGTTTTTAACTTAGT+TGG | - | chr5.1:79981099-79981118 | MS.gene38111:intron | 25.0% |
| !!! | TTTTTAACTTAGTTGGAACT+TGG | - | chr5.1:79981106-79981125 | MS.gene38111:intron | 25.0% |
| AAAGCACACATATATCAAAC+AGG | + | chr5.1:79981160-79981179 | None:intergenic | 30.0% | |
| AAAGCATGGAGTAAAATCTA+AGG | + | chr5.1:79980572-79980591 | None:intergenic | 30.0% | |
| AACAGAAATCGAATGCAAAA+AGG | + | chr5.1:79980691-79980710 | None:intergenic | 30.0% | |
| AAGAACATGGAATACATAGA+GGG | - | chr5.1:79980841-79980860 | MS.gene38111:intron | 30.0% | |
| AATATGTGTTTGTGGTACAA+GGG | + | chr5.1:79981516-79981535 | None:intergenic | 30.0% | |
| AGATAGCAAACTTAAAGAAC+GGG | + | chr5.1:79981612-79981631 | None:intergenic | 30.0% | |
| ATGAAGAAAAACAAACCCTT+GGG | - | chr5.1:79980482-79980501 | MS.gene38111:intron | 30.0% | |
| CATGATAACATGGATGATTT+AGG | - | chr5.1:79981188-79981207 | MS.gene38111:intron | 30.0% | |
| GATAAAGGGACATTAATCAT+AGG | + | chr5.1:79980988-79981007 | None:intergenic | 30.0% | |
| GATTCCAATAAAGATGACAA+CGG | + | chr5.1:79981030-79981049 | None:intergenic | 30.0% | |
| GTAGTGAAACTATATAGTCT+TGG | + | chr5.1:79981052-79981071 | None:intergenic | 30.0% | |
| TAGCTTAGAGTGTGAAATAA+TGG | + | chr5.1:79979494-79979513 | None:intergenic | 30.0% | |
| TGATAGAAAAGAACCTAGTT+TGG | + | chr5.1:79979471-79979490 | None:intergenic | 30.0% | |
| TGATGTTTACGTAATAGTTC+TGG | + | chr5.1:79981814-79981833 | None:intergenic | 30.0% | |
| TTTCATACTAGGATTAACGT+CGG | - | chr5.1:79980172-79980191 | MS.gene38111:intron | 30.0% | |
| ! | ACATATTGGAGACTTTTGTT+AGG | - | chr5.1:79981529-79981548 | MS.gene38111:intron | 30.0% |
| ! | ATAGTGTATTCATTGGCTAA+AGG | - | chr5.1:79980038-79980057 | MS.gene38111:intron | 30.0% |
| ! | CTTCTGAAAAGACAGAAAAA+AGG | + | chr5.1:79979997-79980016 | None:intergenic | 30.0% |
| ! | GAAAAATTGAAGGAGGATTT+TGG | + | chr5.1:79980432-79980451 | None:intergenic | 30.0% |
| ! | TTTTGCATTCGATTTCTGTT+GGG | - | chr5.1:79980691-79980710 | MS.gene38111:intron | 30.0% |
| ! | TTTTTGCATTCGATTTCTGT+TGG | - | chr5.1:79980690-79980709 | MS.gene38111:intron | 30.0% |
| !! | ACTCTAAGCTATTGCTTTTA+CGG | - | chr5.1:79979503-79979522 | MS.gene38111:CDS | 30.0% |
| !! | ATTAACCTTCTAAAATGGAC+AGG | + | chr5.1:79979672-79979691 | None:intergenic | 30.0% |
| !! | TTCTTTTGCTGCTTGATTTA+AGG | - | chr5.1:79980925-79980944 | MS.gene38111:intron | 30.0% |
| AAATACATGAGAGAGAAAGC+AGG | + | chr5.1:79980150-79980169 | None:intergenic | 35.0% | |
| AAGTCTCCAATATGTGTTTG+TGG | + | chr5.1:79981524-79981543 | None:intergenic | 35.0% | |
| ATACAAAATCCCCCCAATAT+GGG | + | chr5.1:79980461-79980480 | None:intergenic | 35.0% | |
| ATTTGTCGTTGTAACGAACA+GGG | + | chr5.1:79979415-79979434 | None:intergenic | 35.0% | |
| CAAGAACATGGAATACATAG+AGG | - | chr5.1:79980840-79980859 | MS.gene38111:intron | 35.0% | |
| CAATATGTGTTTGTGGTACA+AGG | + | chr5.1:79981517-79981536 | None:intergenic | 35.0% | |
| CAGTCATAGCAAATCCTTTA+AGG | - | chr5.1:79980270-79980289 | MS.gene38111:intron | 35.0% | |
| CATATATATAAGTTAGGGGG+AGG | + | chr5.1:79980784-79980803 | None:intergenic | 35.0% | |
| CATGAAGAAAAACAAACCCT+TGG | - | chr5.1:79980481-79980500 | MS.gene38111:intron | 35.0% | |
| CTAAAATGGACAGGAACTAA+GGG | + | chr5.1:79979663-79979682 | None:intergenic | 35.0% | |
| CTTGTACCACAAACACATAT+TGG | - | chr5.1:79981515-79981534 | MS.gene38111:intron | 35.0% | |
| GGAGTAGATGGAAAAAAAGA+GGG | - | chr5.1:79980320-79980339 | MS.gene38111:intron | 35.0% | |
| GTAGATGTGTTGAATGCTAA+TGG | - | chr5.1:79980883-79980902 | MS.gene38111:intron | 35.0% | |
| TACTACAGTGACATTTGTGT+TGG | - | chr5.1:79981296-79981315 | MS.gene38111:intron | 35.0% | |
| TATTTGTCGTTGTAACGAAC+AGG | + | chr5.1:79979416-79979435 | None:intergenic | 35.0% | |
| TGAAGAAAAACAAACCCTTG+GGG | - | chr5.1:79980483-79980502 | MS.gene38111:intron | 35.0% | |
| TGCTTATGCAAATACAGCTT+AGG | - | chr5.1:79979533-79979552 | MS.gene38111:intron | 35.0% | |
| TGTATAGAGGTTTCATTGGA+TGG | + | chr5.1:79980120-79980139 | None:intergenic | 35.0% | |
| TTAGGTGCAAGCATCAAATT+AGG | - | chr5.1:79981547-79981566 | MS.gene38111:intron | 35.0% | |
| TTTGCATTCGATTTCTGTTG+GGG | - | chr5.1:79980692-79980711 | MS.gene38111:intron | 35.0% | |
| ! | ATGAATCTTTGGGTTTATGC+AGG | - | chr5.1:79981653-79981672 | MS.gene38111:intron | 35.0% |
| ! | CTGCTATTTGATATCTTCCA+TGG | - | chr5.1:79980662-79980681 | MS.gene38111:intron | 35.0% |
| ! | TAGTTCCTGTCCATTTTAGA+AGG | - | chr5.1:79979664-79979683 | MS.gene38111:intron | 35.0% |
| ! | TCTAAAATGGACAGGAACTA+AGG | + | chr5.1:79979664-79979683 | None:intergenic | 35.0% |
| !! | ATTTTTCAGTTCCCCCATAT+TGG | - | chr5.1:79980445-79980464 | MS.gene38111:intron | 35.0% |
| !! | TTACTTTTAGCCAAGAGTAG+TGG | + | chr5.1:79980230-79980249 | None:intergenic | 35.0% |
| !! | TTTTGCTGCTTGATTTAAGG+AGG | - | chr5.1:79980928-79980947 | MS.gene38111:intron | 35.0% |
| !! | TTTTTCAGTTCCCCCATATT+GGG | - | chr5.1:79980446-79980465 | MS.gene38111:intron | 35.0% |
| !!! | ATTTTAGGGTGCCTTTGTTT+AGG | - | chr5.1:79979777-79979796 | MS.gene38111:intron | 35.0% |
| ATATATAAGTTAGGGGGAGG+CGG | + | chr5.1:79980781-79980800 | None:intergenic | 40.0% | |
| CAGACTGTTATGTTGTCACA+AGG | - | chr5.1:79981840-79981859 | MS.gene38111:CDS | 40.0% | |
| CAGAGGTAACACATGAACTT+TGG | - | chr5.1:79979892-79979911 | MS.gene38111:CDS | 40.0% | |
| CAGTCCGTTGTCATCTTTAT+TGG | - | chr5.1:79981023-79981042 | MS.gene38111:intron | 40.0% | |
| CGAATGCAAAAAGGATACCA+TGG | + | chr5.1:79980682-79980701 | None:intergenic | 40.0% | |
| CGGGTTTACATCATGACTTT+AGG | - | chr5.1:79981362-79981381 | MS.gene38111:intron | 40.0% | |
| CTTGTGACAACATAACAGTC+TGG | + | chr5.1:79981842-79981861 | None:intergenic | 40.0% | |
| GAAGAAAAACAAACCCTTGG+GGG | - | chr5.1:79980484-79980503 | MS.gene38111:intron | 40.0% | |
| GATACAAAATCCCCCCAATA+TGG | + | chr5.1:79980462-79980481 | None:intergenic | 40.0% | |
| GGCTAAAGGAAAATGCTTGT+TGG | - | chr5.1:79980052-79980071 | MS.gene38111:intron | 40.0% | |
| GGGAACTGAAAAATTGAAGG+AGG | + | chr5.1:79980439-79980458 | None:intergenic | 40.0% | |
| GGGAGTAGATGGAAAAAAAG+AGG | - | chr5.1:79980319-79980338 | MS.gene38111:intron | 40.0% | |
| GTGCTATATACCACTACTCT+TGG | - | chr5.1:79980217-79980236 | MS.gene38111:intron | 40.0% | |
| TAAGGCTATGTTTGCGAGTT+TGG | + | chr5.1:79980554-79980573 | None:intergenic | 40.0% | |
| TACAAAATCCCCCCAATATG+GGG | + | chr5.1:79980460-79980479 | None:intergenic | 40.0% | |
| TCGGTGTATAGAGGTTTCAT+TGG | + | chr5.1:79980124-79980143 | None:intergenic | 40.0% | |
| TCTTACCAATACCAAGTCCA+CGG | + | chr5.1:79981403-79981422 | None:intergenic | 40.0% | |
| TGAGAGAGAAAGCAGGAAAT+CGG | + | chr5.1:79980143-79980162 | None:intergenic | 40.0% | |
| TGGGGGAACTGAAAAATTGA+AGG | + | chr5.1:79980442-79980461 | None:intergenic | 40.0% | |
| ! | ACCTAGTTTGGTGAAATCAG+CGG | + | chr5.1:79979459-79979478 | None:intergenic | 40.0% |
| ! | CATGCTTTCGTTGCACTTTT+CGG | - | chr5.1:79980584-79980603 | MS.gene38111:intron | 40.0% |
| ! | CTGTGTTTTGCGAGTTTAGA+GGG | - | chr5.1:79980293-79980312 | MS.gene38111:intron | 40.0% |
| ! | GGGAAGTTCTCTCTTTTCTT+TGG | - | chr5.1:79980861-79980880 | MS.gene38111:intron | 40.0% |
| ! | TGTGTTTTGCGAGTTTAGAG+GGG | - | chr5.1:79980294-79980313 | MS.gene38111:intron | 40.0% |
| ! | TTTGGGTTTATGCAGGAACA+AGG | - | chr5.1:79981660-79981679 | MS.gene38111:intron | 40.0% |
| ! | TTTTCAGTTCCCCCATATTG+GGG | - | chr5.1:79980447-79980466 | MS.gene38111:intron | 40.0% |
| !! | ATAGCAGTTCTGAATTGCAC+AGG | + | chr5.1:79980649-79980668 | None:intergenic | 40.0% |
| !! | ATTTGCTATGACTGACTCCA+GGG | + | chr5.1:79980264-79980283 | None:intergenic | 40.0% |
| !! | TAGCAGTTCTGAATTGCACA+GGG | + | chr5.1:79980648-79980667 | None:intergenic | 40.0% |
| !!! | CGGACTGTTTTTATGAGATG+TGG | + | chr5.1:79981010-79981029 | None:intergenic | 40.0% |
| !!! | GAGGGTTTTGGGTAAAATGA+AGG | + | chr5.1:79980522-79980541 | None:intergenic | 40.0% |
| !!! | GGTTTTGGGTAAAATGAAGG+AGG | + | chr5.1:79980519-79980538 | None:intergenic | 40.0% |
| AAGTAAACCTGCTGAAACCC+TGG | - | chr5.1:79980244-79980263 | MS.gene38111:intron | 45.0% | |
| ACAAAATCCCCCCAATATGG+GGG | + | chr5.1:79980459-79980478 | None:intergenic | 45.0% | |
| AGCAGGAAATCGGTGTATAG+AGG | + | chr5.1:79980133-79980152 | None:intergenic | 45.0% | |
| CGCGAAGCAAAACATTTCTG+AGG | - | chr5.1:79981709-79981728 | MS.gene38111:intron | 45.0% | |
| CTATGTTTGCGAGTTTGGAG+GGG | + | chr5.1:79980549-79980568 | None:intergenic | 45.0% | |
| CTCGCAAAACACAGCCTTAA+AGG | + | chr5.1:79980287-79980306 | None:intergenic | 45.0% | |
| GCTATGTTTGCGAGTTTGGA+GGG | + | chr5.1:79980550-79980569 | None:intergenic | 45.0% | |
| GTGACAACATAACAGTCTGG+TGG | + | chr5.1:79981839-79981858 | None:intergenic | 45.0% | |
| TCGTTTACGTTCGCGTTTGT+CGG | + | chr5.1:79980086-79980105 | None:intergenic | 45.0% | |
| TGGGTAAAATGAAGGAGGCA+AGG | + | chr5.1:79980514-79980533 | None:intergenic | 45.0% | |
| TTTCAGTTCCCCCATATTGG+GGG | - | chr5.1:79980448-79980467 | MS.gene38111:intron | 45.0% | |
| ! | CGAAAAGTGCAACGAAAGCA+TGG | + | chr5.1:79980586-79980605 | None:intergenic | 45.0% |
| ! | GCTGTGTTTTGCGAGTTTAG+AGG | - | chr5.1:79980292-79980311 | MS.gene38111:intron | 45.0% |
| ! | TTTTGCGAGTTTAGAGGGGA+GGG | - | chr5.1:79980298-79980317 | MS.gene38111:intron | 45.0% |
| !! | AACTAAGGGCCGATTTGGAT+TGG | + | chr5.1:79979649-79979668 | None:intergenic | 45.0% |
| !! | GATTTGCTATGACTGACTCC+AGG | + | chr5.1:79980265-79980284 | None:intergenic | 45.0% |
| !! | TCCGCTGATTTCACCAAACT+AGG | - | chr5.1:79979455-79979474 | MS.gene38111:CDS | 45.0% |
| ACAGGAACTAAGGGCCGATT+TGG | + | chr5.1:79979654-79979673 | None:intergenic | 50.0% | |
| CCAATACCAAGTCCACGGTA+AGG | + | chr5.1:79981398-79981417 | None:intergenic | 50.0% | |
| GGCTATGTTTGCGAGTTTGG+AGG | + | chr5.1:79980551-79980570 | None:intergenic | 50.0% | |
| TTCAGTTCCCCCATATTGGG+GGG | - | chr5.1:79980449-79980468 | MS.gene38111:intron | 50.0% | |
| TTTGCGAGTTTAGAGGGGAG+GGG | - | chr5.1:79980299-79980318 | MS.gene38111:intron | 50.0% | |
| ! | CCTTACCGTGGACTTGGTAT+TGG | - | chr5.1:79981395-79981414 | MS.gene38111:intron | 50.0% |
| ! | GTTTTGCGAGTTTAGAGGGG+AGG | - | chr5.1:79980297-79980316 | MS.gene38111:intron | 50.0% |
| AGAAGGAAGGCGGGCAAGTT+CGG | - | chr5.1:79981342-79981361 | MS.gene38111:intron | 55.0% | |
| CGCCTTCCTTCTTCTCAAGC+CGG | + | chr5.1:79981334-79981353 | None:intergenic | 55.0% | |
| CGGCTTGAGAAGAAGGAAGG+CGG | - | chr5.1:79981332-79981351 | MS.gene38111:intron | 55.0% | |
| GGCTTGAGAAGAAGGAAGGC+GGG | - | chr5.1:79981333-79981352 | MS.gene38111:intron | 55.0% | |
| GTTTGCGAGTTTGGAGGGGA+CGG | + | chr5.1:79980545-79980564 | None:intergenic | 55.0% | |
| TTAGAGGGGAGGGGAGTAGA+TGG | - | chr5.1:79980308-79980327 | MS.gene38111:intron | 55.0% | |
| TTAGCGCCTTACCGTGGACT+TGG | - | chr5.1:79981389-79981408 | MS.gene38111:intron | 55.0% | |
| TTTGCGAGTTTGGAGGGGAC+GGG | + | chr5.1:79980544-79980563 | None:intergenic | 55.0% | |
| ! | ACTGACTCCAGGGTTTCAGC+AGG | + | chr5.1:79980254-79980273 | None:intergenic | 55.0% |
| ! | GTGTTGGCGCAATTGCATGC+CGG | - | chr5.1:79981312-79981331 | MS.gene38111:intron | 55.0% |
| !! | TGCATGCCGGCTTGAGAAGA+AGG | - | chr5.1:79981325-79981344 | MS.gene38111:intron | 55.0% |
| !! | TGCCGGCTTGAGAAGAAGGA+AGG | - | chr5.1:79981329-79981348 | MS.gene38111:intron | 55.0% |
| !!! | GGTGTTTTAGCGCCTTACCG+TGG | - | chr5.1:79981383-79981402 | MS.gene38111:intron | 55.0% |
| GAAGGAAGGCGGGCAAGTTC+GGG | - | chr5.1:79981343-79981362 | MS.gene38111:intron | 60.0% | |
| GAGGCAAGGTAGTCCCCCAA+GGG | + | chr5.1:79980500-79980519 | None:intergenic | 60.0% | |
| CGAGTTTGGAGGGGACGGGA+GGG | + | chr5.1:79980540-79980559 | None:intergenic | 65.0% | |
| GGAGGCAAGGTAGTCCCCCA+AGG | + | chr5.1:79980501-79980520 | None:intergenic | 65.0% | |
| ! | GGAGGGGACGGGAGGGTTTT+GGG | + | chr5.1:79980533-79980552 | None:intergenic | 65.0% |
| ! | TGGAGGGGACGGGAGGGTTT+TGG | + | chr5.1:79980534-79980553 | None:intergenic | 65.0% |
| GCGAGTTTGGAGGGGACGGG+AGG | + | chr5.1:79980541-79980560 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 79979323 | 79981892 | 79979323 | ID=MS.gene38111 |
| chr5.1 | mRNA | 79979323 | 79981892 | 79979323 | ID=MS.gene38111.t1;Parent=MS.gene38111 |
| chr5.1 | exon | 79981739 | 79981892 | 79981739 | ID=MS.gene38111.t1.exon1;Parent=MS.gene38111.t1 |
| chr5.1 | CDS | 79981739 | 79981892 | 79981739 | ID=cds.MS.gene38111.t1;Parent=MS.gene38111.t1 |
| chr5.1 | exon | 79979799 | 79979921 | 79979799 | ID=MS.gene38111.t1.exon2;Parent=MS.gene38111.t1 |
| chr5.1 | CDS | 79979799 | 79979921 | 79979799 | ID=cds.MS.gene38111.t1;Parent=MS.gene38111.t1 |
| chr5.1 | exon | 79979323 | 79979540 | 79979323 | ID=MS.gene38111.t1.exon3;Parent=MS.gene38111.t1 |
| chr5.1 | CDS | 79979323 | 79979540 | 79979323 | ID=cds.MS.gene38111.t1;Parent=MS.gene38111.t1 |
| Gene Sequence |
| Protein sequence |
