AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene059844

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene059844.t1 MTR_2g079490 97.588 539 13 0 1 539 150 688 0.0 1070
MS.gene059844.t1 MTR_8g059125 81.750 537 97 1 1 536 162 698 0.0 915
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene059844.t1 AT3G15380 73.704 540 138 3 1 536 161 700 0.0 813

Find 126 sgRNAs with CRISPR-Local

Find 318 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTCTACATGTTATGGATTT+TGG 0.116753 2.2:-15735781 MS.gene059844:CDS
TTCACCTGTTTGGTTGTTAT+TGG 0.137699 2.2:-15735605 MS.gene059844:CDS
GTCATATTTCCTAGTGTTAA+TGG 0.160201 2.2:-15738556 MS.gene059844:intron
TTCTCACTCAGCTGTCTTAA+AGG 0.173733 2.2:-15738132 MS.gene059844:intron
ATCTGTCGCCTCTTATTATT+GGG 0.194594 2.2:-15735538 MS.gene059844:CDS
GATCTGTCGCCTCTTATTAT+TGG 0.203692 2.2:-15735539 MS.gene059844:CDS
ATCGAACGAAAAGGAATTTC+AGG 0.255259 2.2:+15735263 None:intergenic
GCCATCCTCTTTCACCTGTT+TGG 0.266801 2.2:-15735615 MS.gene059844:CDS
TCACCTGTTTGGTTGTTATT+GGG 0.270892 2.2:-15735604 MS.gene059844:CDS
CCCGGCCGGAGCTGAATAAA+TGG 0.271388 2.2:+15735751 None:intergenic
ACAATGTTCTACTACCTAAA+AGG 0.276175 2.2:-15737632 MS.gene059844:intron
TTGCAGTGTTCTACATGTTA+TGG 0.282895 2.2:-15735788 MS.gene059844:CDS
TAAGTCTTTGCATATCATTT+TGG 0.285338 2.2:+15733814 None:intergenic
CTTTGTTTCTCTCTGTGATT+TGG 0.295140 2.2:-15737733 MS.gene059844:CDS
GATCCTTACATTCACATATA+TGG 0.329782 2.2:-15736775 MS.gene059844:CDS
ATCAGCTATTGCAACAGATT+TGG 0.332889 2.2:-15734739 MS.gene059844:CDS
ATGCAGGTTTGTTGGGCTCT+TGG 0.341214 2.2:-15733972 MS.gene059844:intron
TTTCTGCAGATTGCTATAAC+TGG 0.353625 2.2:-15734780 MS.gene059844:intron
TATTGTTCGGCGCATCCTTA+TGG 0.353828 2.2:-15736565 MS.gene059844:CDS
ATTCCGGTTCACTGATTTGA+TGG 0.357743 2.2:+15735037 None:intergenic
CTTCATGTCTTTCAGTTGGA+TGG 0.371868 2.2:-15736837 MS.gene059844:intron
CAAATGTGTCTTTAAGCCTT+TGG 0.373843 2.2:-15738223 MS.gene059844:CDS
TTGAAGCTCTAGCAATGAAT+TGG 0.374024 2.2:+15738243 None:intergenic
TATGGCAACTTCTGTCCTTA+AGG 0.379154 2.2:-15736547 MS.gene059844:intron
AGGATACCATATGGTATGAT+TGG 0.381943 2.2:+15735810 None:intergenic
AGTATTGGTTCTCTAGCTCT+TGG 0.387761 2.2:-15735209 MS.gene059844:CDS
CCAGTCATGTGCCTGACAAC+TGG 0.392677 2.2:-15735115 MS.gene059844:CDS
GTAACACATAAGTCTCTTCA+TGG 0.400123 2.2:+15735232 None:intergenic
AACTCCTCTCTTCAACTTCA+AGG 0.407170 2.2:-15738592 MS.gene059844:CDS
GTCCGTTACACACCGCATAT+TGG 0.408374 2.2:-15735642 MS.gene059844:CDS
TTTAAGCCTTTGGCAGCAGA+TGG 0.410816 2.2:-15738213 MS.gene059844:CDS
TTACCATGATATAAGCATTC+CGG 0.413773 2.2:+15735021 None:intergenic
TCCATTTATTCAGCTCCGGC+CGG 0.414225 2.2:-15735752 MS.gene059844:CDS
TTACATCAATTGCTATTGTT+CGG 0.423458 2.2:-15736578 MS.gene059844:CDS
GGCTCATCAACAGTGATTGC+TGG 0.426887 2.2:-15735561 MS.gene059844:CDS
GTGTAAAATGCAGGTTTGTT+GGG 0.429531 2.2:-15733979 MS.gene059844:intron
CTTCCATATATGTGAATGTA+AGG 0.429797 2.2:+15736772 None:intergenic
TATAGAAAACATACCACAAC+AGG 0.431860 2.2:+15734552 None:intergenic
AGACTTATGTGTTACAGTAT+TGG 0.440425 2.2:-15735224 MS.gene059844:CDS
TAACATGGGAATATTTCATC+GGG 0.444302 2.2:+15733782 None:intergenic
ATTTCGTTGCTGCAATGCCT+TGG 0.449324 2.2:-15737694 MS.gene059844:CDS
GCCTTCCCGATCCAGTTGTC+AGG 0.450311 2.2:+15735104 None:intergenic
TGTGTAAAATGCAGGTTTGT+TGG 0.452116 2.2:-15733980 MS.gene059844:intron
CCATTTATTCAGCTCCGGCC+GGG 0.453264 2.2:-15735751 MS.gene059844:CDS
GGAGATGTTATATTGTTCCT+TGG 0.458625 2.2:-15734675 MS.gene059844:CDS
TGTCTTTCAGTTGGATGGAT+AGG 0.459269 2.2:-15736832 MS.gene059844:intron
ATGTGCCTGACAACTGGATC+GGG 0.459928 2.2:-15735109 MS.gene059844:CDS
CCAGTTGTCAGGCACATGAC+TGG 0.460652 2.2:+15735115 None:intergenic
GACTGGAGACTTTCAGTTTG+CGG 0.460819 2.2:+15735132 None:intergenic
AAGAATAACATCCTACGGAT+TGG 0.462361 2.2:-15734714 MS.gene059844:CDS
ATCTCCACTCTTGCCTGTTG+TGG 0.469830 2.2:-15734565 MS.gene059844:intron
GTTACACAATTTCTCATAGC+AGG 0.473826 2.2:-15735582 MS.gene059844:CDS
TGGCCTGTGTTGATCGTTTG+TGG 0.475648 2.2:-15737767 MS.gene059844:CDS
AATAGCAATTGATGTAAGAA+TGG 0.476234 2.2:+15736584 None:intergenic
AAGGCATTGCAGCAACGAAA+TGG 0.477500 2.2:+15737696 None:intergenic
CAACCATGATAAAAGTCATA+AGG 0.481385 2.2:+15736610 None:intergenic
AGAATAACATCCTACGGATT+GGG 0.481832 2.2:-15734713 MS.gene059844:CDS
TTTCTCCATTTATTCAGCTC+CGG 0.482821 2.2:-15735756 MS.gene059844:CDS
ATCATGACCCCAATAATAAG+AGG 0.483599 2.2:+15735530 None:intergenic
GGATACCATATGGTATGATT+GGG 0.485559 2.2:+15735811 None:intergenic
ATTGGGCATGTCAATGTGAT+TGG 0.488268 2.2:-15734696 MS.gene059844:CDS
CATATAACCTCATGGAAAAG+AGG 0.493772 2.2:-15735695 MS.gene059844:CDS
TAACCCAATAACAACCAAAC+AGG 0.495118 2.2:+15735601 None:intergenic
GGACCATCAAATCAGTGAAC+CGG 0.495664 2.2:-15735040 MS.gene059844:CDS
AACAACCAAACAGGTGAAAG+AGG 0.496513 2.2:+15735610 None:intergenic
TGAATGGACTTATCAATGAC+AGG 0.497226 2.2:+15738167 None:intergenic
AGGATCATGCTCACCAATGA+TGG 0.503621 2.2:+15736792 None:intergenic
CTGTGTTGATCGTTTGTGGT+GGG 0.508004 2.2:-15737763 MS.gene059844:CDS
GATGCTATAACACCCATCAT+TGG 0.509677 2.2:-15736805 MS.gene059844:CDS
ATTGAGAGTTTCAATGAGAA+GGG 0.509758 2.2:+15733839 None:intergenic
CTGCTGCTCATATAACCTCA+TGG 0.512269 2.2:-15735703 MS.gene059844:CDS
CTCCAATATGCGGTGTGTAA+CGG 0.517980 2.2:+15735640 None:intergenic
CATTGAGAGTTTCAATGAGA+AGG 0.518594 2.2:+15733838 None:intergenic
TGGTTAAGAATAACATCCTA+CGG 0.524720 2.2:-15734719 MS.gene059844:CDS
GAGGAAAAGATCGAACGAAA+AGG 0.525477 2.2:+15735254 None:intergenic
TAGGTTGCTGCAAAAGTGAT+AGG 0.528922 2.2:-15735858 MS.gene059844:CDS
GTGATCTGTGATCATTGTTG+TGG 0.533821 2.2:-15735672 MS.gene059844:CDS
CATCATTCTCTCATACTGTC+AGG 0.534176 2.2:-15733898 MS.gene059844:CDS
CAGAGATACATGGCTGACAT+AGG 0.535311 2.2:-15737797 MS.gene059844:CDS
TGCTGCAATGCCTTGGATAA+CGG 0.535787 2.2:-15737687 MS.gene059844:CDS
GAACCGGAATGCTTATATCA+TGG 0.540249 2.2:-15735024 MS.gene059844:intron
AACACTGCAAGGATACCATA+TGG 0.542211 2.2:+15735801 None:intergenic
TAAGGACAGAAGTTGCCATA+AGG 0.544009 2.2:+15736550 None:intergenic
GTCATTCTGAACAACCCGGC+CGG 0.546462 2.2:+15735737 None:intergenic
TTAAGCCTTTGGCAGCAGAT+GGG 0.546941 2.2:-15738212 MS.gene059844:CDS
AGAATTGATATACTTGTGAA+TGG 0.547515 2.2:+15738151 None:intergenic
CATACCACAACAGGCAAGAG+TGG 0.553297 2.2:+15734561 None:intergenic
AGCCTTTGGCAGCAGATGGG+TGG 0.556537 2.2:-15738209 MS.gene059844:CDS
AATCTATTTACAGAGATACA+TGG 0.560146 2.2:-15737807 MS.gene059844:intron
TGATCTGTGATCATTGTTGT+GGG 0.560312 2.2:-15735671 MS.gene059844:CDS
AGAGTTTCAATGAGAAGGGG+AGG 0.562319 2.2:+15733843 None:intergenic
CTCCACCCATCTGCTGCCAA+AGG 0.570395 2.2:+15738207 None:intergenic
TGTCAGGATTCTGACGAGCA+TGG 0.570944 2.2:-15733882 MS.gene059844:CDS
TATATGAGCAGCAGTTAGAG+TGG 0.582084 2.2:+15735712 None:intergenic
AATAAAACCACCGTTATCCA+AGG 0.582647 2.2:+15737677 None:intergenic
CTTACATTCACATATATGGA+AGG 0.582819 2.2:-15736771 MS.gene059844:CDS
GGATCATGCTCACCAATGAT+GGG 0.585240 2.2:+15736793 None:intergenic
GTCAGGATTCTGACGAGCAT+GGG 0.587543 2.2:-15733881 MS.gene059844:CDS
ATATAACCTCATGGAAAAGA+GGG 0.587592 2.2:-15735694 MS.gene059844:CDS
CATGTGCCTGACAACTGGAT+CGG 0.591232 2.2:-15735110 MS.gene059844:CDS
ACCAAACAGGTGAAAGAGGA+TGG 0.592919 2.2:+15735614 None:intergenic
TTGGGGTCATGATGAAGCAT+CGG 0.601645 2.2:-15735520 MS.gene059844:intron
CAAATCACAGAGAGAAACAA+AGG 0.607234 2.2:+15737734 None:intergenic
CCTGTGTTGATCGTTTGTGG+TGG 0.608362 2.2:-15737764 MS.gene059844:CDS
CATTGACATGCCCAATCCGT+AGG 0.613058 2.2:+15734703 None:intergenic
TTGAGAGTTTCAATGAGAAG+GGG 0.621535 2.2:+15733840 None:intergenic
TTACATTCACATATATGGAA+GGG 0.631269 2.2:-15736770 MS.gene059844:intron
ATTATCTCACCATTAACACT+AGG 0.639078 2.2:+15738547 None:intergenic
GGAAATATGACAGGATAACA+AGG 0.643638 2.2:+15738568 None:intergenic
TTAACACTAGGAAATATGAC+AGG 0.644351 2.2:+15738559 None:intergenic
ATACATGGCTGACATAGGAA+AGG 0.648575 2.2:-15737792 MS.gene059844:CDS
CTGACAGTATGAGAGAATGA+TGG 0.648779 2.2:+15733899 None:intergenic
TGCAATGCCTTGGATAACGG+TGG 0.651035 2.2:-15737684 MS.gene059844:CDS
ATAACATGTAGAACACTGCA+AGG 0.651424 2.2:+15735790 None:intergenic
AGGTCCTTGAAGTTGAAGAG+AGG 0.651499 2.2:+15738588 None:intergenic
TCTGTCGCCTCTTATTATTG+GGG 0.654026 2.2:-15735537 MS.gene059844:CDS
GGCAGTCATTCTGAACAACC+CGG 0.660821 2.2:+15735733 None:intergenic
GCATTGCAGCAACGAAATGG+CGG 0.662646 2.2:+15737699 None:intergenic
GCCTGACAACTGGATCGGGA+AGG 0.663993 2.2:-15735105 MS.gene059844:CDS
CCACCACAAACGATCAACAC+AGG 0.667874 2.2:+15737764 None:intergenic
GAATGGACTTATCAATGACA+GGG 0.677790 2.2:+15738168 None:intergenic
TGGCTGACATAGGAAAGGCA+TGG 0.696862 2.2:-15737787 MS.gene059844:CDS
AGGATGGCAACTCCAATATG+CGG 0.707650 2.2:+15735630 None:intergenic
ACACATAAGTCTCTTCATGG+AGG 0.723284 2.2:+15735235 None:intergenic
AACATGGGAATATTTCATCG+GGG 0.736434 2.2:+15733783 None:intergenic
ACTTGTGAGTGTCTAACATG+AGG 0.749930 2.2:+15734613 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAGTAAATTTAAATAAATAA+AGG - chr2.2:15735090-15735109 MS.gene059844:CDS 10.0%
!!! AATTGATATTTTTCAATTTA+AGG + chr2.2:15736056-15736075 None:intergenic 10.0%
!!! ATTGATATTCTTTAATTTAA+AGG - chr2.2:15736207-15736226 MS.gene059844:intron 10.0%
!!! ATTGATATTTTTCAATTTAA+GGG + chr2.2:15736055-15736074 None:intergenic 10.0%
!!! CTAATATTTAATATTTTTCT+AGG + chr2.2:15735392-15735411 None:intergenic 10.0%
!! TAAACTATACAATAATTACA+AGG - chr2.2:15735154-15735173 MS.gene059844:CDS 15.0%
!! TTTGAAAAAAATATTTGTCT+GGG - chr2.2:15736308-15736327 MS.gene059844:intron 15.0%
!!! AATGTTCATAAATTTTCTAA+TGG + chr2.2:15735249-15735268 None:intergenic 15.0%
!!! ATAATATGTATGTCTTTTAT+TGG - chr2.2:15736135-15736154 MS.gene059844:intron 15.0%
!!! TTACTAAAGACATTTTTTTA+TGG - chr2.2:15736171-15736190 MS.gene059844:intron 15.0%
!!! TTTTAATACTCATAGATAAT+TGG + chr2.2:15737035-15737054 None:intergenic 15.0%
!!! TTTTTTTTTTAACATTCAAC+TGG - chr2.2:15734300-15734319 MS.gene059844:intron 15.0%
!! AACAACATATAATACACATA+AGG + chr2.2:15734543-15734562 None:intergenic 20.0%
!! AACAATTTATAAACCAACAT+TGG + chr2.2:15736992-15737011 None:intergenic 20.0%
!! AGATAAATTTGTAACTATCA+TGG + chr2.2:15737071-15737090 None:intergenic 20.0%
!! ATATATATTGTGTAAAATGC+AGG - chr2.2:15738407-15738426 MS.gene059844:intron 20.0%
!! ATGGTGATATAAAAATAAGT+AGG + chr2.2:15734925-15734944 None:intergenic 20.0%
!! GCATATCTTATAATGTAAAT+AGG + chr2.2:15735126-15735145 None:intergenic 20.0%
!! GGTTTATAAATTGTTGAAAA+AGG - chr2.2:15736997-15737016 MS.gene059844:intron 20.0%
!! TAAATCTTACAAACAGATTT+CGG - chr2.2:15735727-15735746 MS.gene059844:CDS 20.0%
!! TATCCAAAAAAATTATCGAA+AGG + chr2.2:15734026-15734045 None:intergenic 20.0%
!! TATTGTATAGTTTACTTCAT+AGG + chr2.2:15735148-15735167 None:intergenic 20.0%
!! TGATAATTGTTTGCAATAAA+GGG + chr2.2:15738373-15738392 None:intergenic 20.0%
!! TTCCTTAAGAAACAAATATT+TGG + chr2.2:15734818-15734837 None:intergenic 20.0%
!! TTCTAACATAATACTTCTTT+AGG + chr2.2:15737510-15737529 None:intergenic 20.0%
!! TTGAAAAAAATATTTGTCTG+GGG - chr2.2:15736309-15736328 MS.gene059844:intron 20.0%
!! TTTAACCATATCATAAAACA+TGG - chr2.2:15737906-15737925 MS.gene059844:intron 20.0%
!!! AATTACCATGTTTTATGATA+TGG + chr2.2:15737914-15737933 None:intergenic 20.0%
!!! ACACAAAAAGTATTTATTTC+TGG - chr2.2:15735360-15735379 MS.gene059844:intron 20.0%
!!! ATATTTTTACGATAATTCCA+AGG - chr2.2:15736949-15736968 MS.gene059844:intron 20.0%
!!! ATTGTTATTTCGAAAATATG+AGG + chr2.2:15736027-15736046 None:intergenic 20.0%
!!! CTTTGAAAAAAATATTTGTC+TGG - chr2.2:15736307-15736326 MS.gene059844:intron 20.0%
!!! GTTTAAAACTTTGCTTAAAT+AGG + chr2.2:15738294-15738313 None:intergenic 20.0%
!!! TACCAAATATTTGTTTCTTA+AGG - chr2.2:15734813-15734832 MS.gene059844:intron 20.0%
!!! TATATATGTGCTTATTGTTT+TGG - chr2.2:15737450-15737469 MS.gene059844:intron 20.0%
!!! TATCCTTTCGATAATTTTTT+TGG - chr2.2:15734020-15734039 MS.gene059844:intron 20.0%
!!! TTATTTTTATATCACCATGT+TGG - chr2.2:15734927-15734946 MS.gene059844:intron 20.0%
!!! TTTTATTATATGAAATCCAG+AGG - chr2.2:15737978-15737997 MS.gene059844:intron 20.0%
! AATAGCAATTGATGTAAGAA+TGG + chr2.2:15735814-15735833 None:intergenic 25.0%
! AATCAATCAGATTGATTGAA+TGG + chr2.2:15736498-15736517 None:intergenic 25.0%
! AATCTATTTACAGAGATACA+TGG - chr2.2:15734588-15734607 MS.gene059844:CDS 25.0%
! AATTTCAATTATCATCTAGC+TGG - chr2.2:15737930-15737949 MS.gene059844:intron 25.0%
! AGAATGAGTATATACTAACT+TGG + chr2.2:15735666-15735685 None:intergenic 25.0%
! AGAATTGATATACTTGTGAA+TGG + chr2.2:15734247-15734266 None:intergenic 25.0%
! ATAATACACATAAGGCTTAA+TGG + chr2.2:15734535-15734554 None:intergenic 25.0%
! ATACTAGTTACTATAACTGA+TGG - chr2.2:15736451-15736470 MS.gene059844:intron 25.0%
! ATGCACACATAAATGATAAA+TGG + chr2.2:15737422-15737441 None:intergenic 25.0%
! CAAAATGCATAGAAGAATAA+GGG + chr2.2:15735330-15735349 None:intergenic 25.0%
! CATCTATGAATGCATTAAAA+TGG + chr2.2:15733878-15733897 None:intergenic 25.0%
! CTGATAATTGTTTGCAATAA+AGG + chr2.2:15738374-15738393 None:intergenic 25.0%
! GAATGAGTATATACTAACTT+GGG + chr2.2:15735665-15735684 None:intergenic 25.0%
! GTTACAAAAAAATGTGAACT+TGG + chr2.2:15734479-15734498 None:intergenic 25.0%
! TAATCTAATTGAAAGAGTAG+TGG - chr2.2:15737866-15737885 MS.gene059844:intron 25.0%
! TATATTCGTCATAAACATTC+AGG + chr2.2:15735418-15735437 None:intergenic 25.0%
! TATTATGAGTACTAAGTGTT+GGG + chr2.2:15738218-15738237 None:intergenic 25.0%
! TGAATTAGAGAAAAAGAGAA+AGG - chr2.2:15735000-15735019 MS.gene059844:intron 25.0%
! TGCATTATGCATTTCATATA+CGG + chr2.2:15736920-15736939 None:intergenic 25.0%
! TTAAATTAGTGTATTCTTCG+TGG - chr2.2:15734331-15734350 MS.gene059844:intron 25.0%
! TTACATTCACATATATGGAA+GGG - chr2.2:15735625-15735644 MS.gene059844:CDS 25.0%
! TTAGAAAAAAATGAGACGAT+TGG + chr2.2:15737323-15737342 None:intergenic 25.0%
! TTATTATGAGTACTAAGTGT+TGG + chr2.2:15738219-15738238 None:intergenic 25.0%
!! AGGTTTTTATTCCAAACAAA+TGG - chr2.2:15737998-15738017 MS.gene059844:intron 25.0%
!! ATTACTTTGATTTCTGATTC+TGG - chr2.2:15733943-15733962 MS.gene059844:CDS 25.0%
!! ATTGTTGTAACTCTTTTCTT+TGG - chr2.2:15738450-15738469 MS.gene059844:intron 25.0%
!! CTTATTCTTCTATGCATTTT+GGG - chr2.2:15735329-15735348 MS.gene059844:intron 25.0%
!! TAAGTCTTTGCATATCATTT+TGG + chr2.2:15738584-15738603 None:intergenic 25.0%
!! TATCCTTATGACTTTTATCA+TGG - chr2.2:15735782-15735801 MS.gene059844:CDS 25.0%
!! TTACATCAATTGCTATTGTT+CGG - chr2.2:15735817-15735836 MS.gene059844:CDS 25.0%
!!! AATCGTCTCATTTTTTTCTA+AGG - chr2.2:15737322-15737341 MS.gene059844:intron 25.0%
!!! ATGTCTTTTATTGGTTTTGA+TGG - chr2.2:15736144-15736163 MS.gene059844:intron 25.0%
!!! CTAAAGACATTTTTTTATGG+AGG - chr2.2:15736174-15736193 MS.gene059844:intron 25.0%
!!! TAAGTTTGCTGATTGATATT+TGG - chr2.2:15735922-15735941 MS.gene059844:intron 25.0%
!!! TTGCTATTTCGTAAATTTGA+GGG - chr2.2:15736236-15736255 MS.gene059844:intron 25.0%
!!! TTTGCTATTTCGTAAATTTG+AGG - chr2.2:15736235-15736254 MS.gene059844:intron 25.0%
!!! TTTTTTGGATATGCATATGT+CGG - chr2.2:15734035-15734054 MS.gene059844:intron 25.0%
AAAACCTTCAAAACTATGGT+TGG + chr2.2:15736094-15736113 None:intergenic 30.0%
AAACGTTGGATATATAAGAG+AGG - chr2.2:15738081-15738100 MS.gene059844:intron 30.0%
AACGTTGGATATATAAGAGA+GGG - chr2.2:15738082-15738101 MS.gene059844:intron 30.0%
AATGCATTCTACATTTCACT+AGG - chr2.2:15737550-15737569 MS.gene059844:intron 30.0%
ACAATGTTCTACTACCTAAA+AGG - chr2.2:15734763-15734782 MS.gene059844:CDS 30.0%
AGACTTATGTGTTACAGTAT+TGG - chr2.2:15737171-15737190 MS.gene059844:intron 30.0%
AGATTGATTGAATGGTACAA+TGG + chr2.2:15736490-15736509 None:intergenic 30.0%
ATATAACCTCATGGAAAAGA+GGG - chr2.2:15736701-15736720 MS.gene059844:intron 30.0%
ATTATCTCACCATTAACACT+AGG + chr2.2:15733851-15733870 None:intergenic 30.0%
ATTGAGAGTTTCAATGAGAA+GGG + chr2.2:15738559-15738578 None:intergenic 30.0%
CAACCATGATAAAAGTCATA+AGG + chr2.2:15735788-15735807 None:intergenic 30.0%
CAATTATCAGAATCTCACAT+TGG - chr2.2:15738384-15738403 MS.gene059844:intron 30.0%
CATGGTAAACTTTGTTAGTA+TGG - chr2.2:15737389-15737408 MS.gene059844:intron 30.0%
CCAAAATGCATAGAAGAATA+AGG + chr2.2:15735331-15735350 None:intergenic 30.0%
CTTACATTCACATATATGGA+AGG - chr2.2:15735624-15735643 MS.gene059844:CDS 30.0%
CTTCCATATATGTGAATGTA+AGG + chr2.2:15735626-15735645 None:intergenic 30.0%
GATCCTTACATTCACATATA+TGG - chr2.2:15735620-15735639 MS.gene059844:CDS 30.0%
GCATAAAACCTTCAAAACTA+TGG + chr2.2:15736098-15736117 None:intergenic 30.0%
GTCATATTTCCTAGTGTTAA+TGG - chr2.2:15733839-15733858 MS.gene059844:CDS 30.0%
GTGCAATCATTCATCAAATA+AGG - chr2.2:15737472-15737491 MS.gene059844:intron 30.0%
GTTATATACGCAAGTACAAT+AGG + chr2.2:15735455-15735474 None:intergenic 30.0%
TAAGAGTGAAAATGCTAGAA+AGG + chr2.2:15734456-15734475 None:intergenic 30.0%
TAGAAAGGATGAGTAAAAAC+AGG + chr2.2:15734441-15734460 None:intergenic 30.0%
TATAGAAAACATACCACAAC+AGG + chr2.2:15737846-15737865 None:intergenic 30.0%
TCAAAACTATGGTTGGAAAA+AGG + chr2.2:15736087-15736106 None:intergenic 30.0%
TGGTTAAGAATAACATCCTA+CGG - chr2.2:15737676-15737695 MS.gene059844:CDS 30.0%
TGTATTTCAAACCATAGTGA+AGG + chr2.2:15734089-15734108 None:intergenic 30.0%
TTAACACTAGGAAATATGAC+AGG + chr2.2:15733839-15733858 None:intergenic 30.0%
TTACCATGATATAAGCATTC+CGG + chr2.2:15737377-15737396 None:intergenic 30.0%
TTCAACAGTATATATCAGAG+AGG + chr2.2:15734984-15735003 None:intergenic 30.0%
TTCACTAGGTATATGATTTC+TGG - chr2.2:15737564-15737583 MS.gene059844:intron 30.0%
TTTACGATAATTCCAAGGAT+TGG - chr2.2:15736954-15736973 MS.gene059844:intron 30.0%
! ATTATGAGTACTAAGTGTTG+GGG + chr2.2:15738217-15738236 None:intergenic 30.0%
! CAACGGAGTTCATTTTATAT+AGG - chr2.2:15735053-15735072 MS.gene059844:CDS 30.0%
! CAATCTGATTGATTCTAATG+CGG - chr2.2:15736504-15736523 MS.gene059844:intron 30.0%
! CCTTATTCTTCTATGCATTT+TGG - chr2.2:15735328-15735347 MS.gene059844:intron 30.0%
! GTTCTACATGTTATGGATTT+TGG - chr2.2:15736614-15736633 MS.gene059844:CDS 30.0%
! TTGTTTGGAATAAAAACCTC+TGG + chr2.2:15737997-15738016 None:intergenic 30.0%
!!! ACTTTTTTTGTGTAGTTCAC+TGG - chr2.2:15734124-15734143 MS.gene059844:intron 30.0%
!!! TGATGCCTTAAGGTTTTTTT+AGG - chr2.2:15738116-15738135 MS.gene059844:intron 30.0%
!!! TTTTCCAACCATAGTTTTGA+AGG - chr2.2:15736087-15736106 MS.gene059844:intron 30.0%
!!! TTTTTCTAAGGTGTATTGAG+TGG - chr2.2:15737334-15737353 MS.gene059844:intron 30.0%
AACAAATGGTTCCTTAGTGT+TGG - chr2.2:15738012-15738031 MS.gene059844:intron 35.0%
AACCGCATGTTACAATTTCA+AGG + chr2.2:15735995-15736014 None:intergenic 35.0%
AAGAATAACATCCTACGGAT+TGG - chr2.2:15737681-15737700 MS.gene059844:CDS 35.0%
AAGACAAATTTGACCCTGAA+TGG + chr2.2:15736343-15736362 None:intergenic 35.0%
AATAAAACCACCGTTATCCA+AGG + chr2.2:15734721-15734740 None:intergenic 35.0%
AATTAGTGTATTCTTCGTGG+TGG - chr2.2:15734334-15734353 MS.gene059844:intron 35.0%
ACAAATGGTTCCTTAGTGTT+GGG - chr2.2:15738013-15738032 MS.gene059844:intron 35.0%
ACACTAAGGAACCATTTGTT+TGG + chr2.2:15738012-15738031 None:intergenic 35.0%
AGAATAACATCCTACGGATT+GGG - chr2.2:15737682-15737701 MS.gene059844:CDS 35.0%
AGACAAATTTGACCCTGAAT+GGG + chr2.2:15736342-15736361 None:intergenic 35.0%
AGGATACCATATGGTATGAT+TGG + chr2.2:15736588-15736607 None:intergenic 35.0%
ATAACATGTAGAACACTGCA+AGG + chr2.2:15736608-15736627 None:intergenic 35.0%
ATCAGCTATTGCAACAGATT+TGG - chr2.2:15737656-15737675 MS.gene059844:CDS 35.0%
ATCATGACCCCAATAATAAG+AGG + chr2.2:15736868-15736887 None:intergenic 35.0%
ATCCAACTGAAAGACATGAA+GGG + chr2.2:15735559-15735578 None:intergenic 35.0%
ATCGAACGAAAAGGAATTTC+AGG + chr2.2:15737135-15737154 None:intergenic 35.0%
ATCTGTCGCCTCTTATTATT+GGG - chr2.2:15736857-15736876 MS.gene059844:intron 35.0%
ATGCAGCTGAGAATTAAGAA+AGG + chr2.2:15734900-15734919 None:intergenic 35.0%
ATGCTTATGATTGTGTCGTA+TGG - chr2.2:15733916-15733935 MS.gene059844:CDS 35.0%
CAAATCACAGAGAGAAACAA+AGG + chr2.2:15734664-15734683 None:intergenic 35.0%
CAAATGTGTCTTTAAGCCTT+TGG - chr2.2:15734172-15734191 MS.gene059844:intron 35.0%
CATATAACCTCATGGAAAAG+AGG - chr2.2:15736700-15736719 MS.gene059844:intron 35.0%
CATTGAGAGTTTCAATGAGA+AGG + chr2.2:15738560-15738579 None:intergenic 35.0%
CTAATTGAAAGAGTAGTGGT+TGG - chr2.2:15737870-15737889 MS.gene059844:intron 35.0%
CTCCACCTAAAAAAACCTTA+AGG + chr2.2:15738124-15738143 None:intergenic 35.0%
GAAGAATAAGGGATAAGATC+TGG + chr2.2:15735319-15735338 None:intergenic 35.0%
GAGATAGTTGTCTTACCTTA+AGG + chr2.2:15735866-15735885 None:intergenic 35.0%
GATAAATTCGTCAATGCAGA+GGG + chr2.2:15735704-15735723 None:intergenic 35.0%
GATGCTTGCAAATGTACATT+TGG - chr2.2:15734396-15734415 MS.gene059844:intron 35.0%
GGAAATATGACAGGATAACA+AGG + chr2.2:15733830-15733849 None:intergenic 35.0%
GGAAGTTTCAATTTCAGAAG+AGG - chr2.2:15734834-15734853 MS.gene059844:intron 35.0%
GGAGATGTTATATTGTTCCT+TGG - chr2.2:15737720-15737739 MS.gene059844:CDS 35.0%
GGATACCATATGGTATGATT+GGG + chr2.2:15736587-15736606 None:intergenic 35.0%
GGTTCTGTGAATTACTTAAG+AGG + chr2.2:15736379-15736398 None:intergenic 35.0%
GTAACACATAAGTCTCTTCA+TGG + chr2.2:15737166-15737185 None:intergenic 35.0%
GTACCACATAATGTGCATAA+GGG + chr2.2:15736422-15736441 None:intergenic 35.0%
GTCCTTGAAATTGTAACATG+CGG - chr2.2:15735990-15736009 MS.gene059844:intron 35.0%
GTTACACAATTTCTCATAGC+AGG - chr2.2:15736813-15736832 MS.gene059844:CDS 35.0%
GTTATAGCAATCTGCAGAAA+AGG + chr2.2:15737615-15737634 None:intergenic 35.0%
TAACCCAATAACAACCAAAC+AGG + chr2.2:15736797-15736816 None:intergenic 35.0%
TAACCCTTATGCACATTATG+TGG - chr2.2:15736416-15736435 MS.gene059844:intron 35.0%
TACAAACAGATTTCGGTTTC+AGG - chr2.2:15735734-15735753 MS.gene059844:CDS 35.0%
TACCTAAAAGGTTAGAATCC+TGG - chr2.2:15734775-15734794 MS.gene059844:intron 35.0%
TGATAAATTCGTCAATGCAG+AGG + chr2.2:15735705-15735724 None:intergenic 35.0%
TGATCTGTGATCATTGTTGT+GGG - chr2.2:15736724-15736743 MS.gene059844:intron 35.0%
TGTACCACATAATGTGCATA+AGG + chr2.2:15736423-15736442 None:intergenic 35.0%
TGTGTAAAATGCAGGTTTGT+TGG - chr2.2:15738415-15738434 MS.gene059844:intron 35.0%
TTCACCTGTTTGGTTGTTAT+TGG - chr2.2:15736790-15736809 MS.gene059844:CDS 35.0%
TTGAGAGTTTCAATGAGAAG+GGG + chr2.2:15738558-15738577 None:intergenic 35.0%
TTGCAGTGTTCTACATGTTA+TGG - chr2.2:15736607-15736626 MS.gene059844:CDS 35.0%
TTTCTCCATTTATTCAGCTC+CGG - chr2.2:15736639-15736658 MS.gene059844:CDS 35.0%
TTTCTGCAGATTGCTATAAC+TGG - chr2.2:15737615-15737634 MS.gene059844:intron 35.0%
TTTCTTAATTCTCAGCTGCA+TGG - chr2.2:15734899-15734918 MS.gene059844:intron 35.0%
! ACCTTAAGGCATCATGTATA+TGG + chr2.2:15738110-15738129 None:intergenic 35.0%
! CCTTAAGGCATCATGTATAT+GGG + chr2.2:15738109-15738128 None:intergenic 35.0%
! CTTTGTTTCTCTCTGTGATT+TGG - chr2.2:15734662-15734681 MS.gene059844:CDS 35.0%
! GAATGGACTTATCAATGACA+GGG + chr2.2:15734230-15734249 None:intergenic 35.0%
! GTGTAAAATGCAGGTTTGTT+GGG - chr2.2:15738416-15738435 MS.gene059844:intron 35.0%
! GTTTTCCCAATCATACCATA+TGG - chr2.2:15736579-15736598 MS.gene059844:CDS 35.0%
! TCACCTGTTTGGTTGTTATT+GGG - chr2.2:15736791-15736810 MS.gene059844:CDS 35.0%
! TGAATGGACTTATCAATGAC+AGG + chr2.2:15734231-15734250 None:intergenic 35.0%
! TGGTATTTTCTCCTTCACTA+TGG - chr2.2:15734075-15734094 MS.gene059844:intron 35.0%
! TTGAAGCTCTAGCAATGAAT+TGG + chr2.2:15734155-15734174 None:intergenic 35.0%
!! TTTTAGTCCGTGAAAGTGTA+AGG + chr2.2:15736277-15736296 None:intergenic 35.0%
!!! TGCCTTAAGGTTTTTTTAGG+TGG - chr2.2:15738119-15738138 MS.gene059844:intron 35.0%
AACAACCAAACAGGTGAAAG+AGG + chr2.2:15736788-15736807 None:intergenic 40.0%
AACACTGCAAGGATACCATA+TGG + chr2.2:15736597-15736616 None:intergenic 40.0%
AACTCCTCTCTTCAACTTCA+AGG - chr2.2:15733803-15733822 MS.gene059844:CDS 40.0%
AACTGAAAGACATGAAGGGA+AGG + chr2.2:15735555-15735574 None:intergenic 40.0%
AAGAAGAGGAGAGGATGTTA+GGG - chr2.2:15733988-15734007 MS.gene059844:intron 40.0%
AAGGGAAGGCAACATTAACT+CGG + chr2.2:15735541-15735560 None:intergenic 40.0%
ACAAATTTGACCCTGAATGG+GGG + chr2.2:15736340-15736359 None:intergenic 40.0%
ACACATAAGTCTCTTCATGG+AGG + chr2.2:15737163-15737182 None:intergenic 40.0%
ACACTTGAAACCCAACACTA+AGG + chr2.2:15738026-15738045 None:intergenic 40.0%
ATACATGGCTGACATAGGAA+AGG - chr2.2:15734603-15734622 MS.gene059844:CDS 40.0%
ATGCAGGGTAATTACCAACA+TGG + chr2.2:15734944-15734963 None:intergenic 40.0%
ATTGGGCATGTCAATGTGAT+TGG - chr2.2:15737699-15737718 MS.gene059844:CDS 40.0%
CATCATTCTCTCATACTGTC+AGG - chr2.2:15738497-15738516 MS.gene059844:intron 40.0%
CATCCAACTGAAAGACATGA+AGG + chr2.2:15735560-15735579 None:intergenic 40.0%
CATTTCCAAGTCCAGATGAA+CGG + chr2.2:15735294-15735313 None:intergenic 40.0%
CCCATATACATGATGCCTTA+AGG - chr2.2:15738106-15738125 MS.gene059844:intron 40.0%
CGGCATATTAGTTGTTATGC+TGG - chr2.2:15734055-15734074 MS.gene059844:intron 40.0%
CGTGTGTTTGAACTACACAA+CGG - chr2.2:15735036-15735055 MS.gene059844:CDS 40.0%
CGTTGTGTAGTTCAAACACA+CGG + chr2.2:15735038-15735057 None:intergenic 40.0%
CTAATGCGGATATTGCTGAT+AGG - chr2.2:15736518-15736537 MS.gene059844:intron 40.0%
CTGACAGTATGAGAGAATGA+TGG + chr2.2:15738499-15738518 None:intergenic 40.0%
CTTCATGTCTTTCAGTTGGA+TGG - chr2.2:15735558-15735577 MS.gene059844:CDS 40.0%
GAACCGGAATGCTTATATCA+TGG - chr2.2:15737371-15737390 MS.gene059844:intron 40.0%
GACAAATTTGACCCTGAATG+GGG + chr2.2:15736341-15736360 None:intergenic 40.0%
GAGGAAAAGATCGAACGAAA+AGG + chr2.2:15737144-15737163 None:intergenic 40.0%
GATCTGTCGCCTCTTATTAT+TGG - chr2.2:15736856-15736875 MS.gene059844:intron 40.0%
GATGCTATAACACCCATCAT+TGG - chr2.2:15735590-15735609 MS.gene059844:CDS 40.0%
GTAAACAAAATAGCTCAGCC+AGG + chr2.2:15734796-15734815 None:intergenic 40.0%
GTGATCTGTGATCATTGTTG+TGG - chr2.2:15736723-15736742 MS.gene059844:intron 40.0%
GTTAGATACGTGTAACATGC+TGG + chr2.2:15736400-15736419 None:intergenic 40.0%
TAAGGACAGAAGTTGCCATA+AGG + chr2.2:15735848-15735867 None:intergenic 40.0%
TAGGTTGCTGCAAAAGTGAT+AGG - chr2.2:15736537-15736556 MS.gene059844:intron 40.0%
TAGTGGTTGGAGATCACTTA+CGG - chr2.2:15737883-15737902 MS.gene059844:intron 40.0%
TATATGAGCAGCAGTTAGAG+TGG + chr2.2:15736686-15736705 None:intergenic 40.0%
TATGGCAACTTCTGTCCTTA+AGG - chr2.2:15735848-15735867 MS.gene059844:CDS 40.0%
TCTGTCGCCTCTTATTATTG+GGG - chr2.2:15736858-15736877 MS.gene059844:intron 40.0%
TGATAGCAAAACCGTTCATC+TGG - chr2.2:15735280-15735299 MS.gene059844:intron 40.0%
TGTCTTTCAGTTGGATGGAT+AGG - chr2.2:15735563-15735582 MS.gene059844:CDS 40.0%
TTCCCTTCATGTCTTTCAGT+TGG - chr2.2:15735554-15735573 MS.gene059844:CDS 40.0%
TTCTCACTCAGCTGTCTTAA+AGG - chr2.2:15734263-15734282 MS.gene059844:intron 40.0%
TTGCTCGACTCAATCTATAC+CGG - chr2.2:15738339-15738358 MS.gene059844:intron 40.0%
! ACAAAACGATGGTTGATGCA+GGG + chr2.2:15734959-15734978 None:intergenic 40.0%
! AGCCAGGATTCTAACCTTTT+AGG + chr2.2:15734780-15734799 None:intergenic 40.0%
! GACTGACACATAGTTTTCCA+AGG + chr2.2:15737740-15737759 None:intergenic 40.0%
!! AGTATTGGTTCTCTAGCTCT+TGG - chr2.2:15737186-15737205 MS.gene059844:intron 40.0%
!! ATTCCGGTTCACTGATTTGA+TGG + chr2.2:15737361-15737380 None:intergenic 40.0%
!!! GGTTTTTTTAGGTGGAGATG+TGG - chr2.2:15738127-15738146 MS.gene059844:intron 40.0%
ACACTTCTCCGGTTGTATGT+AGG - chr2.2:15735217-15735236 MS.gene059844:CDS 45.0%
ACCAAACAGGTGAAAGAGGA+TGG + chr2.2:15736784-15736803 None:intergenic 45.0%
ACTAGGAATGGAGGAAACGT+TGG - chr2.2:15738067-15738086 MS.gene059844:intron 45.0%
AGAGTTTCAATGAGAAGGGG+AGG + chr2.2:15738555-15738574 None:intergenic 45.0%
AGGATCATGCTCACCAATGA+TGG + chr2.2:15735606-15735625 None:intergenic 45.0%
AGGATGGCAACTCCAATATG+CGG + chr2.2:15736768-15736787 None:intergenic 45.0%
AGGTCCTTGAAGTTGAAGAG+AGG + chr2.2:15733810-15733829 None:intergenic 45.0%
ATTTCGTTGCTGCAATGCCT+TGG - chr2.2:15734701-15734720 MS.gene059844:CDS 45.0%
CAAAACCGTTCATCTGGACT+TGG - chr2.2:15735286-15735305 MS.gene059844:intron 45.0%
CAGAGATACATGGCTGACAT+AGG - chr2.2:15734598-15734617 MS.gene059844:CDS 45.0%
CTCCAATATGCGGTGTGTAA+CGG + chr2.2:15736758-15736777 None:intergenic 45.0%
CTGCTGCTCATATAACCTCA+TGG - chr2.2:15736692-15736711 MS.gene059844:intron 45.0%
GAAGAAGAGGAGAGGATGTT+AGG - chr2.2:15733987-15734006 MS.gene059844:intron 45.0%
GAATCGCACAAACACTTCTC+CGG - chr2.2:15735206-15735225 MS.gene059844:CDS 45.0%
GACCGATCCTTACACTTTCA+CGG - chr2.2:15736267-15736286 MS.gene059844:intron 45.0%
GACTGGAGACTTTCAGTTTG+CGG + chr2.2:15737266-15737285 None:intergenic 45.0%
GCAATAAAGGGTTGCATGAC+CGG + chr2.2:15738361-15738380 None:intergenic 45.0%
GGACCATCAAATCAGTGAAC+CGG - chr2.2:15737355-15737374 MS.gene059844:intron 45.0%
GGATCATGCTCACCAATGAT+GGG + chr2.2:15735605-15735624 None:intergenic 45.0%
GTGGTGTCCAAGTCTCTTTA+GGG - chr2.2:15738146-15738165 MS.gene059844:CDS 45.0%
TATTGTTCGGCGCATCCTTA+TGG - chr2.2:15735830-15735849 MS.gene059844:CDS 45.0%
TCAGAGAGGACACAAAACGA+TGG + chr2.2:15734970-15734989 None:intergenic 45.0%
TGCTGCAATGCCTTGGATAA+CGG - chr2.2:15734708-15734727 MS.gene059844:CDS 45.0%
TGGTGTCCAAGTCTCTTTAG+GGG - chr2.2:15738147-15738166 MS.gene059844:CDS 45.0%
TGTGGTGTCCAAGTCTCTTT+AGG - chr2.2:15738145-15738164 MS.gene059844:CDS 45.0%
TTAAGCCTTTGGCAGCAGAT+GGG - chr2.2:15734183-15734202 MS.gene059844:intron 45.0%
TTGGGGTCATGATGAAGCAT+CGG - chr2.2:15736875-15736894 MS.gene059844:intron 45.0%
TTTAAGCCTTTGGCAGCAGA+TGG - chr2.2:15734182-15734201 MS.gene059844:intron 45.0%
! AGATCACCCTCTTTTCCATG+AGG + chr2.2:15736710-15736729 None:intergenic 45.0%
! CACAAAACGATGGTTGATGC+AGG + chr2.2:15734960-15734979 None:intergenic 45.0%
! CTGTGTTGATCGTTTGTGGT+GGG - chr2.2:15734632-15734651 MS.gene059844:CDS 45.0%
! GATTATGTCCCACATCGACT+AGG - chr2.2:15738050-15738069 MS.gene059844:intron 45.0%
! GTCCGTGAAAGTGTAAGGAT+CGG + chr2.2:15736272-15736291 None:intergenic 45.0%
!! AAGGCATTGCAGCAACGAAA+TGG + chr2.2:15734702-15734721 None:intergenic 45.0%
!! AATTCCAAGGATTGGCTCTG+AGG - chr2.2:15736962-15736981 MS.gene059844:intron 45.0%
ATCTCCACTCTTGCCTGTTG+TGG - chr2.2:15737830-15737849 MS.gene059844:intron 50.0%
ATGTGCCTGACAACTGGATC+GGG - chr2.2:15737286-15737305 MS.gene059844:intron 50.0%
CATACCACAACAGGCAAGAG+TGG + chr2.2:15737837-15737856 None:intergenic 50.0%
CATGTGCCTGACAACTGGAT+CGG - chr2.2:15737285-15737304 MS.gene059844:intron 50.0%
CATTGACATGCCCAATCCGT+AGG + chr2.2:15737695-15737714 None:intergenic 50.0%
CCACCACAAACGATCAACAC+AGG + chr2.2:15734634-15734653 None:intergenic 50.0%
CCTCCATTCCTAGTCGATGT+GGG + chr2.2:15738061-15738080 None:intergenic 50.0%
GCATTGCAGCAACGAAATGG+CGG + chr2.2:15734699-15734718 None:intergenic 50.0%
GCCATCCTCTTTCACCTGTT+TGG - chr2.2:15736780-15736799 MS.gene059844:CDS 50.0%
GGCAGTCATTCTGAACAACC+CGG + chr2.2:15736665-15736684 None:intergenic 50.0%
GGCTCATCAACAGTGATTGC+TGG - chr2.2:15736834-15736853 MS.gene059844:intron 50.0%
GTCAGGATTCTGACGAGCAT+GGG - chr2.2:15738514-15738533 MS.gene059844:intron 50.0%
GTCCGTTACACACCGCATAT+TGG - chr2.2:15736753-15736772 MS.gene059844:intron 50.0%
TACACCTCAGAGCCAATCCT+TGG + chr2.2:15736969-15736988 None:intergenic 50.0%
TCCATTTATTCAGCTCCGGC+CGG - chr2.2:15736643-15736662 MS.gene059844:intron 50.0%
TCCTCCATTCCTAGTCGATG+TGG + chr2.2:15738062-15738081 None:intergenic 50.0%
TCTCCGGTTGTATGTAGGCA+GGG - chr2.2:15735222-15735241 MS.gene059844:CDS 50.0%
TGGCTGACATAGGAAAGGCA+TGG - chr2.2:15734608-15734627 MS.gene059844:CDS 50.0%
TGTCAGGATTCTGACGAGCA+TGG - chr2.2:15738513-15738532 MS.gene059844:intron 50.0%
TTCTCCGGTTGTATGTAGGC+AGG - chr2.2:15735221-15735240 MS.gene059844:CDS 50.0%
TTGCTCCTCGCAAGAAGAAG+AGG - chr2.2:15733974-15733993 MS.gene059844:intron 50.0%
! CCTGTGTTGATCGTTTGTGG+TGG - chr2.2:15734631-15734650 MS.gene059844:CDS 50.0%
! TGCAATGCCTTGGATAACGG+TGG - chr2.2:15734711-15734730 MS.gene059844:CDS 50.0%
! TGGCCTGTGTTGATCGTTTG+TGG - chr2.2:15734628-15734647 MS.gene059844:CDS 50.0%
! TGTCCCACATCGACTAGGAA+TGG - chr2.2:15738055-15738074 MS.gene059844:intron 50.0%
!! ACTAAGTGTTGGGGAGTCCA+GGG + chr2.2:15738208-15738227 None:intergenic 50.0%
!! ATGCAGGTTTGTTGGGCTCT+TGG - chr2.2:15738423-15738442 MS.gene059844:intron 50.0%
!! GCTCTGAGGTGTACCAATGT+TGG - chr2.2:15736976-15736995 MS.gene059844:intron 50.0%
!! TACTAAGTGTTGGGGAGTCC+AGG + chr2.2:15738209-15738228 None:intergenic 50.0%
CCAGGACCCCTAAAGAGACT+TGG + chr2.2:15738156-15738175 None:intergenic 55.0%
CCAGTCATGTGCCTGACAAC+TGG - chr2.2:15737280-15737299 MS.gene059844:intron 55.0%
CCAGTTGTCAGGCACATGAC+TGG + chr2.2:15737283-15737302 None:intergenic 55.0%
CCATTTATTCAGCTCCGGCC+GGG - chr2.2:15736644-15736663 MS.gene059844:intron 55.0%
CCTCGCAAGAAGAAGAGGAG+AGG - chr2.2:15733979-15733998 MS.gene059844:intron 55.0%
CCTCTCCTCTTCTTCTTGCG+AGG + chr2.2:15733982-15734001 None:intergenic 55.0%
CTCCGGTTGTATGTAGGCAG+GGG - chr2.2:15735223-15735242 MS.gene059844:CDS 55.0%
GTCATTCTGAACAACCCGGC+CGG + chr2.2:15736661-15736680 None:intergenic 55.0%
! CCAAGTCTCTTTAGGGGTCC+TGG - chr2.2:15738153-15738172 MS.gene059844:CDS 55.0%
! CCCACATCGACTAGGAATGG+AGG - chr2.2:15738058-15738077 MS.gene059844:intron 55.0%
!! CGGAAATGGGCTAAACGTCC+AGG + chr2.2:15738174-15738193 None:intergenic 55.0%
AGCCTTTGGCAGCAGATGGG+TGG - chr2.2:15734186-15734205 MS.gene059844:intron 60.0%
CCCGGCCGGAGCTGAATAAA+TGG + chr2.2:15736647-15736666 None:intergenic 60.0%
CTCCACCCATCTGCTGCCAA+AGG + chr2.2:15734191-15734210 None:intergenic 60.0%
GCCTGACAACTGGATCGGGA+AGG - chr2.2:15737290-15737309 MS.gene059844:intron 60.0%
GCCTTCCCGATCCAGTTGTC+AGG + chr2.2:15737294-15737313 None:intergenic 60.0%
GGCCCCTGCCTACATACAAC+CGG + chr2.2:15735228-15735247 None:intergenic 60.0%
TGGGGTTGAGCCCCCATTCA+GGG - chr2.2:15736327-15736346 MS.gene059844:intron 60.0%
CTGGGGTTGAGCCCCCATTC+AGG - chr2.2:15736326-15736345 MS.gene059844:intron 65.0%
! TTGGGGAGTCCAGGGAGCGT+CGG + chr2.2:15738200-15738219 None:intergenic 65.0%
!! GGAGCGTCGGGAGCGGAAAT+GGG + chr2.2:15738187-15738206 None:intergenic 65.0%
TTTCCGCTCCCGACGCTCCC+TGG - chr2.2:15738188-15738207 MS.gene059844:CDS 70.0%
!! AGTCCAGGGAGCGTCGGGAG+CGG + chr2.2:15738194-15738213 None:intergenic 70.0%
!! GGGAGCGTCGGGAGCGGAAA+TGG + chr2.2:15738188-15738207 None:intergenic 70.0%
!! TGGGGAGTCCAGGGAGCGTC+GGG + chr2.2:15738199-15738218 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 15733797 15738620 15733797 ID=MS.gene059844
chr2.2 mRNA 15733797 15738620 15733797 ID=MS.gene059844.t1;Parent=MS.gene059844
chr2.2 exon 15738557 15738620 15738557 ID=MS.gene059844.t1.exon1;Parent=MS.gene059844.t1
chr2.2 CDS 15738557 15738620 15738557 ID=cds.MS.gene059844.t1;Parent=MS.gene059844.t1
chr2.2 exon 15738133 15738278 15738133 ID=MS.gene059844.t1.exon2;Parent=MS.gene059844.t1
chr2.2 CDS 15738133 15738278 15738133 ID=cds.MS.gene059844.t1;Parent=MS.gene059844.t1
chr2.2 exon 15737633 15737816 15737633 ID=MS.gene059844.t1.exon3;Parent=MS.gene059844.t1
chr2.2 CDS 15737633 15737816 15737633 ID=cds.MS.gene059844.t1;Parent=MS.gene059844.t1
chr2.2 exon 15736771 15736844 15736771 ID=MS.gene059844.t1.exon4;Parent=MS.gene059844.t1
chr2.2 CDS 15736771 15736844 15736771 ID=cds.MS.gene059844.t1;Parent=MS.gene059844.t1
chr2.2 exon 15736548 15736661 15736548 ID=MS.gene059844.t1.exon5;Parent=MS.gene059844.t1
chr2.2 CDS 15736548 15736661 15736548 ID=cds.MS.gene059844.t1;Parent=MS.gene059844.t1
chr2.2 exon 15735521 15735877 15735521 ID=MS.gene059844.t1.exon6;Parent=MS.gene059844.t1
chr2.2 CDS 15735521 15735877 15735521 ID=cds.MS.gene059844.t1;Parent=MS.gene059844.t1
chr2.2 exon 15735025 15735285 15735025 ID=MS.gene059844.t1.exon7;Parent=MS.gene059844.t1
chr2.2 CDS 15735025 15735285 15735025 ID=cds.MS.gene059844.t1;Parent=MS.gene059844.t1
chr2.2 exon 15734566 15734793 15734566 ID=MS.gene059844.t1.exon8;Parent=MS.gene059844.t1
chr2.2 CDS 15734566 15734793 15734566 ID=cds.MS.gene059844.t1;Parent=MS.gene059844.t1
chr2.2 exon 15733797 15733988 15733797 ID=MS.gene059844.t1.exon9;Parent=MS.gene059844.t1
chr2.2 CDS 15733797 15733988 15733797 ID=cds.MS.gene059844.t1;Parent=MS.gene059844.t1
Gene Sequence

>MS.gene059844

ATGAGAAACTCCTCTCTTCAACTTCAAGGACCTTGTTATCCTGTCATATTTCCTAGTGTTAATGGTGAGATAATTTTTCCATTTTAATGCATTCATAGATGTCATGTTTTGTTGTATGCATGCTTATGATTGTGTCGTATGGATGTATTACTTTGATTTCTGATTCTGGTTGCATTATTGCTCCTCGCAAGAAGAAGAGGAGAGGATGTTAGGGAACTGCAAATATCCTTTCGATAATTTTTTTGGATATGCATATGTCGGCATATTAGTTGTTATGCTGGTATTTTCTCCTTCACTATGGTTTGAAATACATGATTCTTAAAGCATACTTTTTTTGTGTAGTTCACTGGAGTTGCCAATTCATTGCTAGAGCTTCAAATGTGTCTTTAAGCCTTTGGCAGCAGATGGGTGGAGTTAGCATAAACGAAGACCCTGTCATTGATAAGTCCATTCACAAGTATATCAATTCTCACTCAGCTGTCTTAAAGGTTAGCTTTTTTTTTTTTTTTTTTTAACATTCAACTGGTTGATTCTTTAAATTAGTGTATTCTTCGTGGTGGTAAAAATGCAATCAACACAAGTATCAAGTAAAAATTATAGATGCTTGCAAATGTACATTTGGTTTAGAGTCATGATTCTTACCTGTTTTTACTCATCCTTTCTAGCATTTTCACTCTTACCAAGTTCACATTTTTTTGTAACTTTGTATTGCACTGTTTCATTTCATCTGTGTTGCCATTAAGCCTTATGTGTATTATATGTTGTTGAAATTAGAATTTTTACAATTTTTTAATCTATTTACAGAGATACATGGCTGACATAGGAAAGGCATGGCCTGTGTTGATCGTTTGTGGTGGGATTTTACCTTTGTTTCTCTCTGTGATTTGGCTGCTGATGATCCGCCATTTCGTTGCTGCAATGCCTTGGATAACGGTGGTTTTATTTGATGTTCTAATAGTATCAGTTACAATGTTCTACTACCTAAAAGGTTAGAATCCTGGCTGAGCTATTTTGTTTACCAAATATTTGTTTCTTAAGGAAGTTTCAATTTCAGAAGAGGACGAAAATATGAATATTGCTTTTGTGTTATATTCATTTTTCCTTTCTTAATTCTCAGCTGCATGGCCTACTTATTTTTATATCACCATGTTGGTAATTACCCTGCATCAACCATCGTTTTGTGTCCTCTCTGATATATACTGTTGAATTAGAGAAAAAGAGAAAGGCATATAGTGAAACCGTGTGTTTGAACTACACAACGGAGTTCATTTTATATAGGATTAAACTTTAAAGCAGTAAATTTAAATAAATAAAGGAGATACTGTTCCTATTTACATTATAAGATATGCCTATGAAGTAAACTATACAATAATTACAAGGATCATAATCATATTCTCAACATATACAACGAATCGCACAAACACTTCTCCGGTTGTATGTAGGCAGGGGCCATTAGAAAATTTATGAACATTTGATTGTAATTTGATAGCAAAACCGTTCATCTGGACTTGGAAATGATCCAGATCTTATCCCTTATTCTTCTATGCATTTTGGGCATTAGAAACACAAAAAGTATTTATTTCTGGTAGACACCTAGAAAAATATTAAATATTAGATGCCTGAATGTTTATGACGAATATATGTTCTAGTTGAAACCTATTGTACTTGCGTATATAACTTTTGAATTATTATCTTCTCAAATCTTTTTATTTATCTTTGTGAACATCAATCAAATGAAATGCCGAGTTAATGTTGCCTTCCCTTCATGTCTTTCAGTTGGATGGATAGGAAATGATGCTATAACACCCATCATTGGTGAGCATGATCCTTACATTCACATATATGGAAGGGTAAGAATCATTGTGCCCAAGTTAGTATATACTCATTCTATGATTTCTCTCTCTCCCTCTGCATTGACGAATTTATCATGTAAATCTTACAAACAGATTTCGGTTTCAGGAGCTGACTCATCTACGTATTGTCACTATCCTTATGACTTTTATCATGGTTGTTGCCATTCTTACATCAATTGCTATTGTTCGGCGCATCCTTATGGCAACTTCTGTCCTTAAGGTAAGACAACTATCTCTCATGCAATTATGCAACTATGATCAAGTTTTTTGTTTAAGTTTGCTGATTGATATTTGGTAGCAATTATGTTTTATGCTGAAGAAAAGAGTAAATCGACATTTAGTCCTTGAAATTGTAACATGCGGTTAATTTAGTTCCTCATATTTTCGAAATAACAATTCAGTCCCTTAAATTGAAAAATATCAATTAATTTAGTCCTTTTTCCAACCATAGTTTTGAAGGTTTTATGCTTGTTTCGATGCTGAACATAATATGTATGTCTTTTATTGGTTTTGATGGATGTTTACTAAAGACATTTTTTTATGGAGGAACTAAATTGATTGATATTCTTTAATTTAAAGGACTAATTTGCTATTTCGTAAATTTGAGGGACTAAGTTGACCGATCCTTACACTTTCACGGACTAAAATGTCTGTTTACTTTGAAAAAAATATTTGTCTGGGGTTGAGCCCCCATTCAGGGTCAAATTTGTCTTGTATTTTCAATAACCTCTTAAGTAATTCACAGAACCAGCATGTTACACGTATCTAACCCTTATGCACATTATGTGGTACAACATAGCAATACTAGTTACTATAACTGATGGTACTGCATTCTTTCCATTGTACCATTCAATCAATCTGATTGATTCTAATGCGGATATTGCTGATAGGTTGCTGCAAAAGTGATAGGAGAAGTTCAAGAACTTATTGTTTTCCCAATCATACCATATGGTATCCTTGCAGTGTTCTACATGTTATGGATTTTGGCTTTTCTCCATTTATTCAGCTCCGGCCGGGTTGTTCAGAATGACTGCCACTCTAACTGCTGCTCATATAACCTCATGGAAAAGAGGGTGATCTGTGATCATTGTTGTGGGTATAGCGTCCGTTACACACCGCATATTGGAGTTGCCATCCTCTTTCACCTGTTTGGTTGTTATTGGGTTACACAATTTCTCATAGCAGGCTCATCAACAGTGATTGCTGGATCTGTCGCCTCTTATTATTGGGGTCATGATGAAGCATCGGTAAGTCAAAAAAAAATTGTCCGTATATGAAATGCATAATGCAAATCGCAGAATATTTTTACGATAATTCCAAGGATTGGCTCTGAGGTGTACCAATGTTGGTTTATAAATTGTTGAAAAAGGACTATCATTTTACCAATTATCTATGAGTATTAAAATTTAAACAATTTTCCATGATAGTTACAAATTTATCTTTTATATGTCATTAAAATTCTATTTGTCTTTGTGAATGCAGCCTGAAATTCCTTTTCGTTCGATCTTTTCCTCCATGAAGAGACTTATGTGTTACAGTATTGGTTCTCTAGCTCTTGGCTCTCTGACTGTATCATTTGTAGAAGCAATTCGCTTTCTGCTAGAATCTATTCGCCGCAAACTGAAAGTCTCCAGTCATGTGCCTGACAACTGGATCGGGAAGGCTGCATACCAATCGTCTCATTTTTTTCTAAGGTGTATTGAGTGGACCATCAAATCAGTGAACCGGAATGCTTATATCATGGTAAACTTTGTTAGTATGGTGATAAACCATTTATCATTTATGTGTGCATCATGTTGATATATATGTGCTTATTGTTTTGGTGCAATCATTCATCAAATAAGGATATCTTAATGACCTAAAGAAGTATTATGTTAGAAATATGTTGCTTATTTTTATTAATGCATTCTACATTTCACTAGGTATATGATTTCTGGTTTCATTATTTATTCGATTAGTCATCCTTTTCTGCAGATTGCTATAACTGGTAAAAGTTTCTTTAGAGCATCAGCTATTGCAACAGATTTGGTTAAGAATAACATCCTACGGATTGGGCATGTCAATGTGATTGGAGATGTTATATTGTTCCTTGGAAAACTATGTGTCAGTCTCTCAAGTGCTGTTTTTGCTTTCCTCATGTTAGACACTCACAAGTACAAATCTGCGCATAACAAGCTCTCATCTCCACTCTTGCCTGTTGTGGTATGTTTTCTATATAATCTAATTGAAAGAGTAGTGGTTGGAGATCACTTACGGTTTAACCATATCATAAAACATGGTAATTTCAATTATCATCTAGCTGGTAGTTAATCGAAATGTTTTAATGTGTTTTATTATATGAAATCCAGAGGTTTTTATTCCAAACAAATGGTTCCTTAGTGTTGGGTTTCAAGTGTAAGTGATTATGTCCCACATCGACTAGGAATGGAGGAAACGTTGGATATATAAGAGAGGGACCCATATACATGATGCCTTAAGGTTTTTTTAGGTGGAGATGTGGTGTCCAAGTCTCTTTAGGGGTCCTGGACGTTTAGCCCATTTCCGCTCCCGACGCTCCCTGGACTCCCCAACACTTAGTACTCATAATAACAAATTAGAATTACAAATTAGAATTGTACATGAGTTTATTAAACAATTCAGACCTATTTAAGCAAAGTTTTAAACAATTCAGACTTATTTAAGCAAAGTTTTGCTCGACTCAATCTATACCGGTCATGCAACCCTTTATTGCAAACAATTATCAGAATCTCACATTGGATATATATTGTGTAAAATGCAGGTTTGTTGGGCTCTTGGATACATTGTTGTAACTCTTTTCTTTGGAGTTATAGAGATGTCAATTGACACCATCATTCTCTCATACTGTCAGGATTCTGACGAGCATGGGACAGCACGATATGCTCCTCCCCTTCTCATTGAAACTCTCAATGACCAAAATGATATGCAAAGACTTACACAAGAACCCCGATGA
Protein sequence

>MS.gene059844.t1

MRNSSLQLQGPCYPVIFPSVNVHWSCQFIARASNVSLSLWQQMGGVSINEDPVIDKSIHKYINSHSAVLKRYMADIGKAWPVLIVCGGILPLFLSVIWLLMIRHFVAAMPWITVVLFDVLIVSVTMFYYLKVGWIGNDAITPIIGEHDPYIHIYGRELTHLRIVTILMTFIMVVAILTSIAIVRRILMATSVLKVAAKVIGEVQELIVFPIIPYGILAVFYMLWILAFLHLFSSGRVVQNDCHSNCCSYNLMEKRVICDHCCGYSVRYTPHIGVAILFHLFGCYWVTQFLIAGSSTVIAGSVASYYWGHDEASPEIPFRSIFSSMKRLMCYSIGSLALGSLTVSFVEAIRFLLESIRRKLKVSSHVPDNWIGKAAYQSSHFFLRCIEWTIKSVNRNAYIMIAITGKSFFRASAIATDLVKNNILRIGHVNVIGDVILFLGKLCVSLSSAVFAFLMLDTHKYKSAHNKLSSPLLPVVVCWALGYIVVTLFFGVIEMSIDTIILSYCQDSDEHGTARYAPPLLIETLNDQNDMQRLTQEPR