Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060303.t1 | KEH44063.1 | 90.6 | 524 | 9 | 2 | 1 | 484 | 1 | 524 | 3.80E-275 | 956.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060303.t1 | A0A072VRJ7 | 90.6 | 524 | 9 | 2 | 1 | 484 | 1 | 524 | 2.7e-275 | 956.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050675 | MS.gene060303 | 0.821318 | 4.30E-53 | -1.69E-46 |
| MS.gene060303 | MS.gene23352 | 0.804405 | 2.19E-49 | -1.69E-46 |
| MS.gene060303 | MS.gene50709 | 0.802471 | 5.52E-49 | -1.69E-46 |
| MS.gene060303 | MS.gene54468 | 0.800577 | 1.35E-48 | -1.69E-46 |
| MS.gene060303 | MS.gene63310 | 0.801346 | 9.41E-49 | -1.69E-46 |
| MS.gene060303 | MS.gene65534 | 0.818804 | 1.62E-52 | -1.69E-46 |
| MS.gene060303 | MS.gene80234 | 0.800043 | 1.73E-48 | -1.69E-46 |
| MS.gene060303 | MS.gene82916 | 0.812052 | 5.15E-51 | -1.69E-46 |
| MS.gene060303 | MS.gene86206 | 0.801133 | 1.04E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060303.t1 | MTR_1g107165 | 90.649 | 524 | 9 | 2 | 1 | 484 | 1 | 524 | 0.0 | 961 |
| MS.gene060303.t1 | MTR_5g083500 | 24.953 | 533 | 297 | 18 | 1 | 476 | 7 | 493 | 4.83e-35 | 137 |
| MS.gene060303.t1 | MTR_3g071950 | 24.858 | 527 | 303 | 15 | 2 | 476 | 7 | 492 | 3.58e-33 | 132 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060303.t1 | AT2G15020 | 47.736 | 530 | 219 | 12 | 1 | 479 | 1 | 523 | 4.36e-174 | 500 |
| MS.gene060303.t1 | AT5G64190 | 22.201 | 536 | 317 | 14 | 2 | 478 | 7 | 501 | 8.39e-34 | 134 |
| MS.gene060303.t1 | AT5G64190 | 22.201 | 536 | 317 | 14 | 2 | 478 | 8 | 502 | 9.92e-34 | 133 |
| MS.gene060303.t1 | AT2G40390 | 24.380 | 484 | 281 | 16 | 46 | 478 | 46 | 495 | 1.05e-26 | 113 |
Find 126 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAGGAGTGGGAGGAAATT+AGG | 0.150832 | 1.2:+79773946 | None:intergenic |
| TCCTTCCCGGGCTCGGGTTT+GGG | 0.154770 | 1.2:-79773206 | MS.gene060303:CDS |
| GGAGGATAGGTGGAGAATTT+TGG | 0.158495 | 1.2:-79772780 | MS.gene060303:CDS |
| GTTTGGGTGGGCCCGGAAAT+TGG | 0.177853 | 1.2:-79773190 | MS.gene060303:CDS |
| TTCCTTCCCGGGCTCGGGTT+TGG | 0.231232 | 1.2:-79773207 | MS.gene060303:CDS |
| CTCAAAGCAGAGCGAACTTC+TGG | 0.233120 | 1.2:-79774081 | MS.gene060303:CDS |
| ATGAAACTGGCGCGAAACTA+TGG | 0.249589 | 1.2:-79773448 | MS.gene060303:CDS |
| GTTGATTTGCCTCTAATTCA+TGG | 0.263186 | 1.2:-79772688 | MS.gene060303:CDS |
| GAAGGAGTGGGAGGAAATTA+GGG | 0.275301 | 1.2:+79773947 | None:intergenic |
| ACAATATCAATATGGATATT+TGG | 0.280660 | 1.2:-79774212 | None:intergenic |
| ATGATCCATGCTATGGGTTC+TGG | 0.281523 | 1.2:+79773841 | None:intergenic |
| ACATAACTAGCTCCAATTTC+CGG | 0.286974 | 1.2:+79773178 | None:intergenic |
| GAAAACAAGGTTGAAGAAAA+TGG | 0.312483 | 1.2:+79773792 | None:intergenic |
| ATGGTGCATTATAAGAGAAT+TGG | 0.320496 | 1.2:-79773572 | MS.gene060303:CDS |
| AAGAAAATGGAGAGGGATTC+CGG | 0.322655 | 1.2:+79773805 | None:intergenic |
| CTCTGTTTCATGCGCACCCT+TGG | 0.328639 | 1.2:-79773610 | MS.gene060303:CDS |
| GTAATAGCAGGGGATGAATA+TGG | 0.339074 | 1.2:-79772856 | MS.gene060303:intron |
| CATAACTAGCTCCAATTTCC+GGG | 0.345763 | 1.2:+79773179 | None:intergenic |
| GTGAGTTGGATATGATTTCT+TGG | 0.353682 | 1.2:+79773914 | None:intergenic |
| TTCTCTTATAATGCACCATT+TGG | 0.359036 | 1.2:+79773576 | None:intergenic |
| TTATGTGGCAGGATTGAGTT+TGG | 0.369615 | 1.2:-79773161 | MS.gene060303:CDS |
| GTTACTAATGCTTCTGAGTC+TGG | 0.377587 | 1.2:+79774057 | None:intergenic |
| CGTCTCCATGTGGCGAGGTT+AGG | 0.381632 | 1.2:-79773274 | MS.gene060303:CDS |
| TGCGATGCGCCTAGCGAAGC+AGG | 0.387728 | 1.2:-79773742 | MS.gene060303:CDS |
| GCGCGAAACTATGGGCAAAA+TGG | 0.389815 | 1.2:-79773439 | MS.gene060303:CDS |
| GGCTCGGGTTTGGGTGGGCC+CGG | 0.397924 | 1.2:-79773197 | MS.gene060303:CDS |
| ATATGATTTCTTGGAGGAGT+TGG | 0.413022 | 1.2:+79773923 | None:intergenic |
| GCCAGTTTCATCGTCATAAC+CGG | 0.420930 | 1.2:+79773460 | None:intergenic |
| TCATTCCACTCTACTGAGTT+GGG | 0.426246 | 1.2:+79774171 | None:intergenic |
| GGCCCACCCAAACCCGAGCC+CGG | 0.433858 | 1.2:+79773200 | None:intergenic |
| TGGTGCATTATAAGAGAATT+GGG | 0.447103 | 1.2:-79773571 | MS.gene060303:CDS |
| GCCGGTTATGACGATGAAAC+TGG | 0.450773 | 1.2:-79773461 | MS.gene060303:CDS |
| GATGAATATGGAGAAGAAGT+AGG | 0.452069 | 1.2:-79772844 | MS.gene060303:CDS |
| GGGCAAAATGGTAAATTTCA+AGG | 0.461892 | 1.2:-79773427 | MS.gene060303:CDS |
| GACAACGCAGTTTCGAGAAC+CGG | 0.463504 | 1.2:+79773691 | None:intergenic |
| TACTTGCCTGACCAAGCAAA+AGG | 0.464231 | 1.2:-79772751 | MS.gene060303:CDS |
| TCTGTTTCATGCGCACCCTT+GGG | 0.465524 | 1.2:-79773609 | MS.gene060303:CDS |
| TGGAGGAGTTGGAGAAGGAG+TGG | 0.467245 | 1.2:+79773934 | None:intergenic |
| TATGTGGCAGGATTGAGTTT+GGG | 0.467367 | 1.2:-79773160 | MS.gene060303:CDS |
| GTACCTGATTATTGACTCCT+TGG | 0.467874 | 1.2:+79773396 | None:intergenic |
| GGAGGAGTTGGAGAAGGAGT+GGG | 0.470083 | 1.2:+79773935 | None:intergenic |
| ATTATAAGAGAATTGGGTGT+AGG | 0.472547 | 1.2:-79773565 | MS.gene060303:CDS |
| TCCCGGGCTCGGGTTTGGGT+GGG | 0.474749 | 1.2:-79773202 | MS.gene060303:CDS |
| AGAAGCATTAGTAACCTTCA+TGG | 0.477116 | 1.2:-79774049 | MS.gene060303:CDS |
| ACCTTCATGGTATTCTTACA+AGG | 0.479621 | 1.2:-79774036 | MS.gene060303:CDS |
| ATGCCAAGGAGTCAATAATC+AGG | 0.479874 | 1.2:-79773399 | MS.gene060303:CDS |
| CGGTCTAGCTCACCACCAAT+TGG | 0.481424 | 1.2:-79773374 | MS.gene060303:CDS |
| CTCATTCCACTCTACTGAGT+TGG | 0.484353 | 1.2:+79774170 | None:intergenic |
| GAGAACAAAGAGTTGGAGAA+TGG | 0.487193 | 1.2:-79773023 | MS.gene060303:CDS |
| TTCCCGGGCTCGGGTTTGGG+TGG | 0.488666 | 1.2:-79773203 | MS.gene060303:CDS |
| TCAAAGCAGAGCGAACTTCT+GGG | 0.491139 | 1.2:-79774080 | MS.gene060303:CDS |
| TTTCTTGGAGGAGTTGGAGA+AGG | 0.494592 | 1.2:+79773929 | None:intergenic |
| AAGCTTCAGCGAAGTCTTCG+AGG | 0.497840 | 1.2:-79773051 | MS.gene060303:CDS |
| GTGGAGGTTAAGTAAAGAGA+TGG | 0.497916 | 1.2:-79772821 | MS.gene060303:CDS |
| TCTGTCGCGTAAGAGAATTT+CGG | 0.501746 | 1.2:+79773517 | None:intergenic |
| TTTCCACTCGTTACTTGCTC+CGG | 0.502153 | 1.2:-79773710 | MS.gene060303:CDS |
| CGATTCGATGATCCATGCTA+TGG | 0.504253 | 1.2:+79773834 | None:intergenic |
| ACCCAAACCCGAGCCCGGGA+AGG | 0.505885 | 1.2:+79773205 | None:intergenic |
| ATGAATATGGAGAAGAAGTA+GGG | 0.506264 | 1.2:-79772843 | MS.gene060303:CDS |
| ACTGCACGTGTGCTTCCAAT+TGG | 0.511898 | 1.2:+79773359 | None:intergenic |
| TTATAAGAGAATTGGGTGTA+GGG | 0.512306 | 1.2:-79773564 | MS.gene060303:CDS |
| TGGAAGGGAGTGTGTTGAAG+TGG | 0.512738 | 1.2:-79772801 | MS.gene060303:CDS |
| GGAGTTGGAGAAGGAGTGGG+AGG | 0.515060 | 1.2:+79773938 | None:intergenic |
| GCCCACCCAAACCCGAGCCC+GGG | 0.519196 | 1.2:+79773201 | None:intergenic |
| GGAGAATGAGAACAAAGAGT+TGG | 0.522842 | 1.2:-79773030 | MS.gene060303:CDS |
| CGAGAAATCAGATATTTCAA+AGG | 0.531598 | 1.2:-79773077 | MS.gene060303:CDS |
| ATTGGAGCTAGTTATGTGGC+AGG | 0.532438 | 1.2:-79773172 | MS.gene060303:CDS |
| GGTTAAGTAAAGAGATGGAA+GGG | 0.532562 | 1.2:-79772816 | MS.gene060303:CDS |
| GAAATTGAGAAGGTTGTCAA+TGG | 0.533296 | 1.2:-79773106 | MS.gene060303:CDS |
| TGAAACTGGCGCGAAACTAT+GGG | 0.537081 | 1.2:-79773447 | MS.gene060303:CDS |
| ATTTCAAGGTATTGATGCCA+AGG | 0.539586 | 1.2:-79773413 | MS.gene060303:CDS |
| ATGGAGAAGAAGTAGGGTGG+AGG | 0.540386 | 1.2:-79772837 | MS.gene060303:CDS |
| GTGTTGAAGTGGAGGATAGG+TGG | 0.541096 | 1.2:-79772790 | MS.gene060303:CDS |
| TTCTCTTTCATTATTCTCCG+TGG | 0.541554 | 1.2:+79773132 | None:intergenic |
| AGTGTGTTGAAGTGGAGGAT+AGG | 0.543439 | 1.2:-79772793 | MS.gene060303:CDS |
| CATTTCTCAGAGATCCAAAG+AGG | 0.544595 | 1.2:+79773988 | None:intergenic |
| CACACCTACGGTAATAAAGA+AGG | 0.549675 | 1.2:+79773642 | None:intergenic |
| ATTGGAAGCACACGTGCAGT+TGG | 0.551697 | 1.2:-79773356 | MS.gene060303:CDS |
| CTTCTTTATTACCGTAGGTG+TGG | 0.553037 | 1.2:-79773641 | MS.gene060303:CDS |
| ATCGTGCGCTGTGGGTGAGT+TGG | 0.557028 | 1.2:+79773900 | None:intergenic |
| AATATGGAGAAGAAGTAGGG+TGG | 0.557252 | 1.2:-79772840 | MS.gene060303:CDS |
| AAGTTCGAACTTGCTAGAGA+TGG | 0.561591 | 1.2:-79774132 | MS.gene060303:CDS |
| TTGGGTACATAATAGCCAAA+TGG | 0.563454 | 1.2:-79773591 | MS.gene060303:CDS |
| ATTGAGTTTGGGTAGGTCCA+CGG | 0.563566 | 1.2:-79773149 | MS.gene060303:CDS |
| TAGAGTGAACCTGCTTCGCT+AGG | 0.565264 | 1.2:+79773733 | None:intergenic |
| GGAGAATAATGAAAGAGAAG+TGG | 0.566557 | 1.2:-79773128 | MS.gene060303:CDS |
| TGGCAGGATTGAGTTTGGGT+AGG | 0.569578 | 1.2:-79773156 | MS.gene060303:CDS |
| ATTTGGCTATTATGTACCCA+AGG | 0.572803 | 1.2:+79773593 | None:intergenic |
| GTGCAGTTGGAATATACAGT+TGG | 0.573238 | 1.2:-79773343 | MS.gene060303:CDS |
| AGTTGGATATGATTTCTTGG+AGG | 0.577043 | 1.2:+79773917 | None:intergenic |
| AGGTTAAGTAAAGAGATGGA+AGG | 0.577773 | 1.2:-79772817 | MS.gene060303:CDS |
| TCAATATGGATATTTGGTCA+TGG | 0.577891 | 1.2:-79774206 | None:intergenic |
| AAGAGAAGTGGAAATTGAGA+AGG | 0.580891 | 1.2:-79773116 | MS.gene060303:CDS |
| TAAGAGAATTTCGGATTCGA+AGG | 0.581926 | 1.2:+79773526 | None:intergenic |
| ACTTGCCTGACCAAGCAAAA+GGG | 0.583888 | 1.2:-79772750 | MS.gene060303:CDS |
| CAAGTGCTATCGTGCGCTGT+GGG | 0.584719 | 1.2:+79773892 | None:intergenic |
| GCACGTGTGCTTCCAATTGG+TGG | 0.586502 | 1.2:+79773362 | None:intergenic |
| GAGTTCAGTGTCCACACCTA+CGG | 0.589061 | 1.2:+79773630 | None:intergenic |
| AGAACCTTCTTTATTACCGT+AGG | 0.595571 | 1.2:-79773646 | MS.gene060303:CDS |
| GAATGGATCAAGACGCGGAG+GGG | 0.597718 | 1.2:-79773006 | MS.gene060303:CDS |
| GCAAGTGCTATCGTGCGCTG+TGG | 0.604725 | 1.2:+79773891 | None:intergenic |
| GATTCGATGATCCATGCTAT+GGG | 0.607078 | 1.2:+79773835 | None:intergenic |
| AACTCCCCAACTCAGTAGAG+TGG | 0.608177 | 1.2:-79774176 | MS.gene060303:CDS |
| AAGGTTGAAGAAAATGGAGA+GGG | 0.609805 | 1.2:+79773798 | None:intergenic |
| GATTCTGAAAGGCTATGCGC+CGG | 0.613203 | 1.2:-79773479 | MS.gene060303:CDS |
| TCTTACGCGACAGAGTCTCA+TGG | 0.613762 | 1.2:-79773508 | MS.gene060303:CDS |
| AAGGAGTCAATAATCAGGTA+CGG | 0.620490 | 1.2:-79773394 | MS.gene060303:CDS |
| GATCATCGAATCGCACACAC+CGG | 0.623850 | 1.2:-79773824 | MS.gene060303:CDS |
| CAAGGTTGAAGAAAATGGAG+AGG | 0.624633 | 1.2:+79773797 | None:intergenic |
| TCAAACCAGAACCCATAGCA+TGG | 0.627175 | 1.2:-79773846 | MS.gene060303:CDS |
| TAAAACCTAACCTCGCCACA+TGG | 0.634156 | 1.2:+79773269 | None:intergenic |
| GTTGTCGAAGAAACTAGCTT+CGG | 0.635873 | 1.2:-79773674 | MS.gene060303:CDS |
| CATTCCACTCTACTGAGTTG+GGG | 0.640217 | 1.2:+79774172 | None:intergenic |
| GCCTTGTAAGAATACCATGA+AGG | 0.642996 | 1.2:+79774035 | None:intergenic |
| TTTGGCTATTATGTACCCAA+GGG | 0.643631 | 1.2:+79773594 | None:intergenic |
| AAGGGAGTGTGTTGAAGTGG+AGG | 0.645267 | 1.2:-79772798 | MS.gene060303:CDS |
| GGAAATTGGAGCTAGTTATG+TGG | 0.646603 | 1.2:-79773176 | MS.gene060303:CDS |
| GAACCGGAGCAAGTAACGAG+TGG | 0.649394 | 1.2:+79773707 | None:intergenic |
| GAGAATGGATCAAGACGCGG+AGG | 0.650927 | 1.2:-79773008 | MS.gene060303:CDS |
| AGAGACGAATGGTGAAAACA+AGG | 0.653167 | 1.2:+79773779 | None:intergenic |
| GCATAGCCAAAAGAGACGAA+TGG | 0.663700 | 1.2:+79773768 | None:intergenic |
| AGAATGGATCAAGACGCGGA+GGG | 0.664709 | 1.2:-79773007 | MS.gene060303:CDS |
| TGATAATATACGTCTCCATG+TGG | 0.695983 | 1.2:-79773284 | MS.gene060303:CDS |
| ATATACGTCTCCATGTGGCG+AGG | 0.705067 | 1.2:-79773279 | MS.gene060303:CDS |
| TTGGAGAATGGATCAAGACG+CGG | 0.707631 | 1.2:-79773011 | MS.gene060303:CDS |
| TTGAAACTAGGTGTATTGAG+TGG | 0.714414 | 1.2:-79772720 | MS.gene060303:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATACAGTTGGATTTTATGA+TGG | - | chr1.2:79773545-79773564 | MS.gene060303:CDS | 25.0% |
| !!! | ATTTTATGATGGATTCATTC+AGG | - | chr1.2:79773556-79773575 | MS.gene060303:CDS | 25.0% |
| ATGAATATGGAGAAGAAGTA+GGG | - | chr1.2:79774033-79774052 | MS.gene060303:CDS | 30.0% | |
| ATGGTGCATTATAAGAGAAT+TGG | - | chr1.2:79773304-79773323 | MS.gene060303:CDS | 30.0% | |
| ATTATAAGAGAATTGGGTGT+AGG | - | chr1.2:79773311-79773330 | MS.gene060303:CDS | 30.0% | |
| CGAGAAATCAGATATTTCAA+AGG | - | chr1.2:79773799-79773818 | MS.gene060303:CDS | 30.0% | |
| GAAAACAAGGTTGAAGAAAA+TGG | + | chr1.2:79773087-79773106 | None:intergenic | 30.0% | |
| TGGTGCATTATAAGAGAATT+GGG | - | chr1.2:79773305-79773324 | MS.gene060303:CDS | 30.0% | |
| TTATAAGAGAATTGGGTGTA+GGG | - | chr1.2:79773312-79773331 | MS.gene060303:CDS | 30.0% | |
| TTCTCTTATAATGCACCATT+TGG | + | chr1.2:79773303-79773322 | None:intergenic | 30.0% | |
| ! | GGTAATTTTCCATGAATTAG+AGG | + | chr1.2:79774200-79774219 | None:intergenic | 30.0% |
| ! | GTTTTGCATGATAATATGAC+AGG | - | chr1.2:79773914-79773933 | MS.gene060303:CDS | 30.0% |
| !! | TTTTAAACATGGTGATGATG+TGG | - | chr1.2:79773625-79773644 | MS.gene060303:CDS | 30.0% |
| AAGAGAAGTGGAAATTGAGA+AGG | - | chr1.2:79773760-79773779 | MS.gene060303:CDS | 35.0% | |
| AAGGAGTCAATAATCAGGTA+CGG | - | chr1.2:79773482-79773501 | MS.gene060303:CDS | 35.0% | |
| AAGGTTGAAGAAAATGGAGA+GGG | + | chr1.2:79773081-79773100 | None:intergenic | 35.0% | |
| AATAGACCGTTTAGTAAGAG+CGG | - | chr1.2:79773990-79774009 | MS.gene060303:CDS | 35.0% | |
| ACATAACTAGCTCCAATTTC+CGG | + | chr1.2:79773701-79773720 | None:intergenic | 35.0% | |
| ACCTTCATGGTATTCTTACA+AGG | - | chr1.2:79772840-79772859 | MS.gene060303:CDS | 35.0% | |
| AGAACCTTCTTTATTACCGT+AGG | - | chr1.2:79773230-79773249 | MS.gene060303:CDS | 35.0% | |
| AGGTTAAGTAAAGAGATGGA+AGG | - | chr1.2:79774059-79774078 | MS.gene060303:CDS | 35.0% | |
| AGTTGGATATGATTTCTTGG+AGG | + | chr1.2:79772962-79772981 | None:intergenic | 35.0% | |
| ATATGATTTCTTGGAGGAGT+TGG | + | chr1.2:79772956-79772975 | None:intergenic | 35.0% | |
| ATTTGGCTATTATGTACCCA+AGG | + | chr1.2:79773286-79773305 | None:intergenic | 35.0% | |
| GAAATTGAGAAGGTTGTCAA+TGG | - | chr1.2:79773770-79773789 | MS.gene060303:CDS | 35.0% | |
| GATGAATATGGAGAAGAAGT+AGG | - | chr1.2:79774032-79774051 | MS.gene060303:CDS | 35.0% | |
| GGAGAATAATGAAAGAGAAG+TGG | - | chr1.2:79773748-79773767 | MS.gene060303:CDS | 35.0% | |
| GGGCAAAATGGTAAATTTCA+AGG | - | chr1.2:79773449-79773468 | MS.gene060303:CDS | 35.0% | |
| GGTTAAGTAAAGAGATGGAA+GGG | - | chr1.2:79774060-79774079 | MS.gene060303:CDS | 35.0% | |
| TAAGAGAATTTCGGATTCGA+AGG | + | chr1.2:79773353-79773372 | None:intergenic | 35.0% | |
| TAATATGACAGGTCAAGAAG+TGG | - | chr1.2:79773925-79773944 | MS.gene060303:CDS | 35.0% | |
| TCAACACTCAAAAACCTCTT+TGG | - | chr1.2:79772874-79772893 | MS.gene060303:intron | 35.0% | |
| TGATAATATACGTCTCCATG+TGG | - | chr1.2:79773592-79773611 | MS.gene060303:CDS | 35.0% | |
| TTCTCTTTCATTATTCTCCG+TGG | + | chr1.2:79773747-79773766 | None:intergenic | 35.0% | |
| TTGAAACTAGGTGTATTGAG+TGG | - | chr1.2:79774156-79774175 | MS.gene060303:CDS | 35.0% | |
| TTGGGTACATAATAGCCAAA+TGG | - | chr1.2:79773285-79773304 | MS.gene060303:CDS | 35.0% | |
| TTTGGCTATTATGTACCCAA+GGG | + | chr1.2:79773285-79773304 | None:intergenic | 35.0% | |
| ! | GTGAGTTGGATATGATTTCT+TGG | + | chr1.2:79772965-79772984 | None:intergenic | 35.0% |
| ! | TTTTCACCATTCGTCTCTTT+TGG | - | chr1.2:79773102-79773121 | MS.gene060303:CDS | 35.0% |
| !! | AGAAGCATTAGTAACCTTCA+TGG | - | chr1.2:79772827-79772846 | MS.gene060303:CDS | 35.0% |
| !! | ATTTCAAGGTATTGATGCCA+AGG | - | chr1.2:79773463-79773482 | MS.gene060303:CDS | 35.0% |
| !! | CATGGTTTTTGGATTCTGAA+AGG | - | chr1.2:79773386-79773405 | MS.gene060303:CDS | 35.0% |
| !! | GTTGATTTGCCTCTAATTCA+TGG | - | chr1.2:79774188-79774207 | MS.gene060303:CDS | 35.0% |
| !!! | AAGGGAGTCATTTTGAAACT+AGG | - | chr1.2:79774144-79774163 | MS.gene060303:CDS | 35.0% |
| !!! | AGAGGTTTTTGAGTGTTGAA+TGG | + | chr1.2:79772873-79772892 | None:intergenic | 35.0% |
| !!! | GTTTTTGAGTGTTGAATGGA+TGG | + | chr1.2:79772869-79772888 | None:intergenic | 35.0% |
| !!! | TGGTTTGAGTTTTTGAAGCT+GGG | + | chr1.2:79773018-79773037 | None:intergenic | 35.0% |
| AAGAAAATGGAGAGGGATTC+CGG | + | chr1.2:79773074-79773093 | None:intergenic | 40.0% | |
| AATATGGAGAAGAAGTAGGG+TGG | - | chr1.2:79774036-79774055 | MS.gene060303:CDS | 40.0% | |
| AGAGACGAATGGTGAAAACA+AGG | + | chr1.2:79773100-79773119 | None:intergenic | 40.0% | |
| ATGCCAAGGAGTCAATAATC+AGG | - | chr1.2:79773477-79773496 | MS.gene060303:CDS | 40.0% | |
| CAAGGTTGAAGAAAATGGAG+AGG | + | chr1.2:79773082-79773101 | None:intergenic | 40.0% | |
| CACACCTACGGTAATAAAGA+AGG | + | chr1.2:79773237-79773256 | None:intergenic | 40.0% | |
| CATAACTAGCTCCAATTTCC+GGG | + | chr1.2:79773700-79773719 | None:intergenic | 40.0% | |
| CATTTCTCAGAGATCCAAAG+AGG | + | chr1.2:79772891-79772910 | None:intergenic | 40.0% | |
| CTTCTTTATTACCGTAGGTG+TGG | - | chr1.2:79773235-79773254 | MS.gene060303:CDS | 40.0% | |
| GAGAACAAAGAGTTGGAGAA+TGG | - | chr1.2:79773853-79773872 | MS.gene060303:CDS | 40.0% | |
| GATTCGATGATCCATGCTAT+GGG | + | chr1.2:79773044-79773063 | None:intergenic | 40.0% | |
| GCCTTGTAAGAATACCATGA+AGG | + | chr1.2:79772844-79772863 | None:intergenic | 40.0% | |
| GGAAATTGGAGCTAGTTATG+TGG | - | chr1.2:79773700-79773719 | MS.gene060303:CDS | 40.0% | |
| GGAGAATGAGAACAAAGAGT+TGG | - | chr1.2:79773846-79773865 | MS.gene060303:CDS | 40.0% | |
| GTAATAGCAGGGGATGAATA+TGG | - | chr1.2:79774020-79774039 | MS.gene060303:CDS | 40.0% | |
| GTGCAGTTGGAATATACAGT+TGG | - | chr1.2:79773533-79773552 | MS.gene060303:CDS | 40.0% | |
| GTGGAGGTTAAGTAAAGAGA+TGG | - | chr1.2:79774055-79774074 | MS.gene060303:CDS | 40.0% | |
| GTTACTAATGCTTCTGAGTC+TGG | + | chr1.2:79772822-79772841 | None:intergenic | 40.0% | |
| TATGTGGCAGGATTGAGTTT+GGG | - | chr1.2:79773716-79773735 | MS.gene060303:CDS | 40.0% | |
| TCATTCCACTCTACTGAGTT+GGG | + | chr1.2:79772708-79772727 | None:intergenic | 40.0% | |
| TCTGTCGCGTAAGAGAATTT+CGG | + | chr1.2:79773362-79773381 | None:intergenic | 40.0% | |
| TTATGTGGCAGGATTGAGTT+TGG | - | chr1.2:79773715-79773734 | MS.gene060303:CDS | 40.0% | |
| ! | ACGAGAAACATTTTCCTTCC+CGG | - | chr1.2:79773657-79773676 | MS.gene060303:CDS | 40.0% |
| ! | CAAAATGACTCCCTTTTGCT+TGG | + | chr1.2:79774139-79774158 | None:intergenic | 40.0% |
| ! | CTAGCAAGTTCGAACTTTTG+TGG | + | chr1.2:79772741-79772760 | None:intergenic | 40.0% |
| ! | GAGGATAGGTGGAGAATTTT+GGG | - | chr1.2:79774097-79774116 | MS.gene060303:CDS | 40.0% |
| ! | GTTGTCGAAGAAACTAGCTT+CGG | - | chr1.2:79773202-79773221 | MS.gene060303:CDS | 40.0% |
| !! | AAGTTCGAACTTGCTAGAGA+TGG | - | chr1.2:79772744-79772763 | MS.gene060303:CDS | 40.0% |
| !! | GTACCTGATTATTGACTCCT+TGG | + | chr1.2:79773483-79773502 | None:intergenic | 40.0% |
| !!! | AGTTTTTGAAGCTGGGATCT+AGG | + | chr1.2:79773011-79773030 | None:intergenic | 40.0% |
| !!! | CTGGTTTGAGTTTTTGAAGC+TGG | + | chr1.2:79773019-79773038 | None:intergenic | 40.0% |
| !!! | GCGAGGTTAGGTTTTAAACA+TGG | - | chr1.2:79773614-79773633 | MS.gene060303:CDS | 40.0% |
| !!! | GTTTTTGAAGCTGGGATCTA+GGG | + | chr1.2:79773010-79773029 | None:intergenic | 40.0% |
| ACCGATCCGCTCTTACTAAA+CGG | + | chr1.2:79773999-79774018 | None:intergenic | 45.0% | |
| ACCGTTTAGTAAGAGCGGAT+CGG | - | chr1.2:79773995-79774014 | MS.gene060303:CDS | 45.0% | |
| ACTTGCCTGACCAAGCAAAA+GGG | - | chr1.2:79774126-79774145 | MS.gene060303:CDS | 45.0% | |
| AGAAGGAGTGGGAGGAAATT+AGG | + | chr1.2:79772933-79772952 | None:intergenic | 45.0% | |
| AGTGTGTTGAAGTGGAGGAT+AGG | - | chr1.2:79774083-79774102 | MS.gene060303:CDS | 45.0% | |
| ATGAAACTGGCGCGAAACTA+TGG | - | chr1.2:79773428-79773447 | MS.gene060303:CDS | 45.0% | |
| ATGATCCATGCTATGGGTTC+TGG | + | chr1.2:79773038-79773057 | None:intergenic | 45.0% | |
| ATTGAGTTTGGGTAGGTCCA+CGG | - | chr1.2:79773727-79773746 | MS.gene060303:CDS | 45.0% | |
| ATTGGAGCTAGTTATGTGGC+AGG | - | chr1.2:79773704-79773723 | MS.gene060303:CDS | 45.0% | |
| CATTCCACTCTACTGAGTTG+GGG | + | chr1.2:79772707-79772726 | None:intergenic | 45.0% | |
| CGATTCGATGATCCATGCTA+TGG | + | chr1.2:79773045-79773064 | None:intergenic | 45.0% | |
| CTCATTCCACTCTACTGAGT+TGG | + | chr1.2:79772709-79772728 | None:intergenic | 45.0% | |
| GAAGGAGTGGGAGGAAATTA+GGG | + | chr1.2:79772932-79772951 | None:intergenic | 45.0% | |
| GCATAGCCAAAAGAGACGAA+TGG | + | chr1.2:79773111-79773130 | None:intergenic | 45.0% | |
| GCCAGTTTCATCGTCATAAC+CGG | + | chr1.2:79773419-79773438 | None:intergenic | 45.0% | |
| TAAAACCTAACCTCGCCACA+TGG | + | chr1.2:79773610-79773629 | None:intergenic | 45.0% | |
| TACTTGCCTGACCAAGCAAA+AGG | - | chr1.2:79774125-79774144 | MS.gene060303:CDS | 45.0% | |
| TCAAACCAGAACCCATAGCA+TGG | - | chr1.2:79773030-79773049 | MS.gene060303:CDS | 45.0% | |
| TCAAAGCAGAGCGAACTTCT+GGG | - | chr1.2:79772796-79772815 | MS.gene060303:CDS | 45.0% | |
| TGAAACTGGCGCGAAACTAT+GGG | - | chr1.2:79773429-79773448 | MS.gene060303:CDS | 45.0% | |
| TTGGAGAATGGATCAAGACG+CGG | - | chr1.2:79773865-79773884 | MS.gene060303:CDS | 45.0% | |
| TTTCCACTCGTTACTTGCTC+CGG | - | chr1.2:79773166-79773185 | MS.gene060303:CDS | 45.0% | |
| TTTCTTGGAGGAGTTGGAGA+AGG | + | chr1.2:79772950-79772969 | None:intergenic | 45.0% | |
| ! | CGACAGAGTCTCATGGTTTT+TGG | - | chr1.2:79773375-79773394 | MS.gene060303:CDS | 45.0% |
| ! | CGAGAAACATTTTCCTTCCC+GGG | - | chr1.2:79773658-79773677 | MS.gene060303:CDS | 45.0% |
| ! | GGAGGATAGGTGGAGAATTT+TGG | - | chr1.2:79774096-79774115 | MS.gene060303:CDS | 45.0% |
| AACTCCCCAACTCAGTAGAG+TGG | - | chr1.2:79772700-79772719 | MS.gene060303:CDS | 50.0% | |
| AAGCTTCAGCGAAGTCTTCG+AGG | - | chr1.2:79773825-79773844 | MS.gene060303:CDS | 50.0% | |
| ACTGCACGTGTGCTTCCAAT+TGG | + | chr1.2:79773520-79773539 | None:intergenic | 50.0% | |
| AGAATGGATCAAGACGCGGA+GGG | - | chr1.2:79773869-79773888 | MS.gene060303:CDS | 50.0% | |
| AGCGGATCGGTTGTAATAGC+AGG | - | chr1.2:79774008-79774027 | MS.gene060303:CDS | 50.0% | |
| ATATACGTCTCCATGTGGCG+AGG | - | chr1.2:79773597-79773616 | MS.gene060303:CDS | 50.0% | |
| ATGGAGAAGAAGTAGGGTGG+AGG | - | chr1.2:79774039-79774058 | MS.gene060303:CDS | 50.0% | |
| CAGGTCAAGAAGTGGCATCA+TGG | - | chr1.2:79773933-79773952 | MS.gene060303:CDS | 50.0% | |
| CGGATCGGTTGTAATAGCAG+GGG | - | chr1.2:79774010-79774029 | MS.gene060303:CDS | 50.0% | |
| CTCAAAGCAGAGCGAACTTC+TGG | - | chr1.2:79772795-79772814 | MS.gene060303:CDS | 50.0% | |
| GACAACGCAGTTTCGAGAAC+CGG | + | chr1.2:79773188-79773207 | None:intergenic | 50.0% | |
| GAGTTCAGTGTCCACACCTA+CGG | + | chr1.2:79773249-79773268 | None:intergenic | 50.0% | |
| GATCATCGAATCGCACACAC+CGG | - | chr1.2:79773052-79773071 | MS.gene060303:CDS | 50.0% | |
| GCCGGTTATGACGATGAAAC+TGG | - | chr1.2:79773415-79773434 | MS.gene060303:CDS | 50.0% | |
| GCGCGAAACTATGGGCAAAA+TGG | - | chr1.2:79773437-79773456 | MS.gene060303:CDS | 50.0% | |
| GCGGATCGGTTGTAATAGCA+GGG | - | chr1.2:79774009-79774028 | MS.gene060303:CDS | 50.0% | |
| GTGTTGAAGTGGAGGATAGG+TGG | - | chr1.2:79774086-79774105 | MS.gene060303:CDS | 50.0% | |
| TAGAGTGAACCTGCTTCGCT+AGG | + | chr1.2:79773146-79773165 | None:intergenic | 50.0% | |
| TCTGTTTCATGCGCACCCTT+GGG | - | chr1.2:79773267-79773286 | MS.gene060303:CDS | 50.0% | |
| TCTTACGCGACAGAGTCTCA+TGG | - | chr1.2:79773368-79773387 | MS.gene060303:CDS | 50.0% | |
| TGGCAGGATTGAGTTTGGGT+AGG | - | chr1.2:79773720-79773739 | MS.gene060303:CDS | 50.0% | |
| ! | AACATTTTCCTTCCCGGGCT+CGG | - | chr1.2:79773663-79773682 | MS.gene060303:CDS | 50.0% |
| ! | AAGGGAGTGTGTTGAAGTGG+AGG | - | chr1.2:79774078-79774097 | MS.gene060303:CDS | 50.0% |
| ! | ATTGGAAGCACACGTGCAGT+TGG | - | chr1.2:79773520-79773539 | MS.gene060303:CDS | 50.0% |
| ! | GATTCTGAAAGGCTATGCGC+CGG | - | chr1.2:79773397-79773416 | MS.gene060303:CDS | 50.0% |
| ! | TGACTCCCTTTTGCTTGGTC+AGG | + | chr1.2:79774134-79774153 | None:intergenic | 50.0% |
| ! | TGGAAGGGAGTGTGTTGAAG+TGG | - | chr1.2:79774075-79774094 | MS.gene060303:CDS | 50.0% |
| AGTGGCATCATGGAAGCCCA+CGG | - | chr1.2:79773943-79773962 | MS.gene060303:CDS | 55.0% | |
| ATCATGGAAGCCCACGGTTG+AGG | - | chr1.2:79773949-79773968 | MS.gene060303:CDS | 55.0% | |
| CAAGTGCTATCGTGCGCTGT+GGG | + | chr1.2:79772987-79773006 | None:intergenic | 55.0% | |
| CTCTGTTTCATGCGCACCCT+TGG | - | chr1.2:79773266-79773285 | MS.gene060303:CDS | 55.0% | |
| GAACCGGAGCAAGTAACGAG+TGG | + | chr1.2:79773172-79773191 | None:intergenic | 55.0% | |
| GAATGGATCAAGACGCGGAG+GGG | - | chr1.2:79773870-79773889 | MS.gene060303:CDS | 55.0% | |
| GAGAATGGATCAAGACGCGG+AGG | - | chr1.2:79773868-79773887 | MS.gene060303:CDS | 55.0% | |
| GCACGTGTGCTTCCAATTGG+TGG | + | chr1.2:79773517-79773536 | None:intergenic | 55.0% | |
| GGAGGAGTTGGAGAAGGAGT+GGG | + | chr1.2:79772944-79772963 | None:intergenic | 55.0% | |
| TCATGGAAGCCCACGGTTGA+GGG | - | chr1.2:79773950-79773969 | MS.gene060303:CDS | 55.0% | |
| TGGAGGAGTTGGAGAAGGAG+TGG | + | chr1.2:79772945-79772964 | None:intergenic | 55.0% | |
| ! | ACATTTTCCTTCCCGGGCTC+GGG | - | chr1.2:79773664-79773683 | MS.gene060303:CDS | 55.0% |
| ! | CGGTCTAGCTCACCACCAAT+TGG | - | chr1.2:79773502-79773521 | MS.gene060303:CDS | 55.0% |
| ACATATCGCCCCCTCAACCG+TGG | + | chr1.2:79773963-79773982 | None:intergenic | 60.0% | |
| ATCGTGCGCTGTGGGTGAGT+TGG | + | chr1.2:79772979-79772998 | None:intergenic | 60.0% | |
| ATGGAAGCCCACGGTTGAGG+GGG | - | chr1.2:79773952-79773971 | MS.gene060303:CDS | 60.0% | |
| CATATCGCCCCCTCAACCGT+GGG | + | chr1.2:79773962-79773981 | None:intergenic | 60.0% | |
| CATGGAAGCCCACGGTTGAG+GGG | - | chr1.2:79773951-79773970 | MS.gene060303:CDS | 60.0% | |
| CGGTTGAGGGGGCGATATGT+CGG | - | chr1.2:79773963-79773982 | MS.gene060303:CDS | 60.0% | |
| CGTCTCCATGTGGCGAGGTT+AGG | - | chr1.2:79773602-79773621 | MS.gene060303:CDS | 60.0% | |
| GCAAGTGCTATCGTGCGCTG+TGG | + | chr1.2:79772988-79773007 | None:intergenic | 60.0% | |
| GGAGTTGGAGAAGGAGTGGG+AGG | + | chr1.2:79772941-79772960 | None:intergenic | 60.0% | |
| GGTTGAGGGGGCGATATGTC+GGG | - | chr1.2:79773964-79773983 | MS.gene060303:CDS | 60.0% | |
| GTTGAGGGGGCGATATGTCG+GGG | - | chr1.2:79773965-79773984 | MS.gene060303:CDS | 60.0% | |
| GTTTGGGTGGGCCCGGAAAT+TGG | - | chr1.2:79773686-79773705 | MS.gene060303:CDS | 60.0% | |
| TCCTTCCCGGGCTCGGGTTT+GGG | - | chr1.2:79773670-79773689 | MS.gene060303:CDS | 65.0% | |
| TGCGATGCGCCTAGCGAAGC+AGG | - | chr1.2:79773134-79773153 | MS.gene060303:CDS | 65.0% | |
| TTCCTTCCCGGGCTCGGGTT+TGG | - | chr1.2:79773669-79773688 | MS.gene060303:CDS | 65.0% | |
| ACCCAAACCCGAGCCCGGGA+AGG | + | chr1.2:79773674-79773693 | None:intergenic | 70.0% | |
| TCCCGGGCTCGGGTTTGGGT+GGG | - | chr1.2:79773674-79773693 | MS.gene060303:CDS | 70.0% | |
| TTCCCGGGCTCGGGTTTGGG+TGG | - | chr1.2:79773673-79773692 | MS.gene060303:CDS | 70.0% | |
| GCCCACCCAAACCCGAGCCC+GGG | + | chr1.2:79773678-79773697 | None:intergenic | 75.0% | |
| GGCCCACCCAAACCCGAGCC+CGG | + | chr1.2:79773679-79773698 | None:intergenic | 75.0% | |
| GGCTCGGGTTTGGGTGGGCC+CGG | - | chr1.2:79773679-79773698 | MS.gene060303:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 79772675 | 79774223 | 79772675 | ID=MS.gene060303 |
| chr1.2 | mRNA | 79772675 | 79774223 | 79772675 | ID=MS.gene060303.t1;Parent=MS.gene060303 |
| chr1.2 | exon | 79772963 | 79774223 | 79772963 | ID=MS.gene060303.t1.exon1;Parent=MS.gene060303.t1 |
| chr1.2 | CDS | 79772963 | 79774223 | 79772963 | ID=cds.MS.gene060303.t1;Parent=MS.gene060303.t1 |
| chr1.2 | exon | 79772675 | 79772868 | 79772675 | ID=MS.gene060303.t1.exon2;Parent=MS.gene060303.t1 |
| chr1.2 | CDS | 79772675 | 79772868 | 79772675 | ID=cds.MS.gene060303.t1;Parent=MS.gene060303.t1 |
| Gene Sequence |
| Protein sequence |
