AlfalfaGEDB | MS.gene63310

M. sativa cultivar XinJiangDaYe / MS.gene63310

KEGG: -
GO: GO:0000166 GO:0003674 GO:0005488 GO:0005524 GO:0008144 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0097159 GO:0097367 GO:1901265 GO:1901363
PFAM: PF00004.32

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene63310.t1	XP_013460697.1	97.9	437	8	1	1	437	1	436	3.70E-245	857.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene63310.t1	Q7X999	82.9	438	71	3	1	437	1	435	1.7e-211	736.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene63310.t1	A0A072UZ59	97.9	437	8	1	1	437	1	436	2.6e-245	857.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049171	MS.gene63310	0.88581	5.90E-72	-1.69E-46
MS.gene049173	MS.gene63310	0.841253	5.32E-58	-1.69E-46
MS.gene049217	MS.gene63310	0.847734	9.59E-60	-1.69E-46
MS.gene049222	MS.gene63310	0.89529	1.10E-75	-1.69E-46
MS.gene049232	MS.gene63310	0.929673	4.96E-93	-1.69E-46
MS.gene049285	MS.gene63310	0.914567	1.65E-84	-1.69E-46
MS.gene049320	MS.gene63310	0.925421	1.88E-90	-1.69E-46
MS.gene049369	MS.gene63310	0.815934	7.17E-52	-1.69E-46
MS.gene04939	MS.gene63310	0.809323	2.00E-50	-1.69E-46
MS.gene049396	MS.gene63310	0.87492	4.63E-68	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene63310.t1	MTR_3g068030	97.941	437	8	1	1	437	1	436	0.0	885
MS.gene63310.t1	MTR_3g068030	97.872	423	8	1	15	437	1	422	0.0	858
MS.gene63310.t1	MTR_5g080450	89.318	440	40	4	1	437	1	436	0.0	813
MS.gene63310.t1	MTR_4g021210	83.105	438	72	2	1	437	1	437	0.0	756
MS.gene63310.t1	MTR_2g105480	45.721	409	198	13	25	420	17	414	9.29e-111	332
MS.gene63310.t1	MTR_2g105480	48.415	347	158	11	25	361	17	352	4.13e-99	300
MS.gene63310.t1	MTR_2g105480	49.660	294	127	11	25	308	17	299	2.08e-79	248

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene63310.t1	AT2G39730	80.137	438	83	2	1	437	1	435	0.0	730
MS.gene63310.t1	AT2G39730	80.137	438	83	2	1	437	1	435	0.0	729
MS.gene63310.t1	AT2G39730	80.137	438	83	2	1	437	1	435	0.0	729
MS.gene63310.t1	AT1G73110	54.636	302	130	6	125	420	31	331	3.38e-114	338
MS.gene63310.t1	AT1G73110	54.636	302	130	6	125	420	128	428	1.09e-112	338

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Find 117 sgRNAs with CRISPR-Local

Find 179 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAGCTTGTGAACTCAA+AGG	0.613555	3.3:-60262073	MS.gene63310:CDS
AAAGCTGAATTAGAAACTGT+TGG	0.560874	3.3:+60264019	None:intergenic
AAATTTACATACCTTGATGT+TGG	0.464290	3.3:+60263540	None:intergenic
AACAGACCGACGGAGACAGA+TGG	0.601295	3.3:-60263895	MS.gene63310:CDS
AACGATCTCGATGCAGGAGC+AGG	0.497933	3.3:-60262587	MS.gene63310:CDS
AACTCACTTGATTCCCATCT+TGG	0.355485	3.3:+60263364	None:intergenic
AACTTTGACAACACTATGGA+TGG	0.466779	3.3:-60263631	MS.gene63310:CDS
AAGATTGTTGACACCTTCCC+TGG	0.404593	3.3:-60262275	MS.gene63310:CDS
AAGCTTGTGAACTCAAAGGA+AGG	0.624377	3.3:-60262069	MS.gene63310:CDS
AAGTGTTGAGAAATCATTAC+CGG	0.455328	3.3:+60262421	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGCTGAATTAGAAACTGT+TGG	+	chr3.3:60262825-60262844	None:intergenic	30.0%
AACTAATCACCCTTCTAATA+TGG	+	chr3.3:60262195-60262214	None:intergenic	30.0%
AATCAAGATGCTATTAAGGA+GGG	-	chr3.3:60264934-60264953	MS.gene63310:CDS	30.0%
AATTGTCTCTACTATCATAG+GGG	-	chr3.3:60263637-60263656	MS.gene63310:CDS	30.0%
AGTAATAGATTTCAAGGAGT+TGG	-	chr3.3:60262570-60262589	MS.gene63310:CDS	30.0%
ATAAGCTCTCTCAAATACTT+AGG	+	chr3.3:60262307-60262326	None:intergenic	30.0%
ATATCAGCTAAGTATCACAT+AGG	+	chr3.3:60262091-60262110	None:intergenic	30.0%
ATATGTCCATAAGCTGTATT+CGG	+	chr3.3:60263730-60263749	None:intergenic	30.0%
ATATTCAAGACCGTTTGAAT+CGG	-	chr3.3:60262259-60262278	MS.gene63310:intron	30.0%
ATGAAATGAGCACTTGAATT+AGG	+	chr3.3:60264031-60264050	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.3	gene	60261897	60264966	60261897	ID=MS.gene63310
chr3.3	mRNA	60261897	60264966	60261897	ID=MS.gene63310.t1;Parent=MS.gene63310
chr3.3	exon	60264925	60264966	60264925	ID=MS.gene63310.t1.exon1;Parent=MS.gene63310.t1
chr3.3	CDS	60264925	60264966	60264925	ID=cds.MS.gene63310.t1;Parent=MS.gene63310.t1
chr3.3	exon	60263746	60264071	60263746	ID=MS.gene63310.t1.exon2;Parent=MS.gene63310.t1
chr3.3	CDS	60263746	60264071	60263746	ID=cds.MS.gene63310.t1;Parent=MS.gene63310.t1
chr3.3	exon	60263552	60263657	60263552	ID=MS.gene63310.t1.exon3;Parent=MS.gene63310.t1
chr3.3	CDS	60263552	60263657	60263552	ID=cds.MS.gene63310.t1;Parent=MS.gene63310.t1
chr3.3	exon	60263371	60263456	60263371	ID=MS.gene63310.t1.exon4;Parent=MS.gene63310.t1
chr3.3	CDS	60263371	60263456	60263371	ID=cds.MS.gene63310.t1;Parent=MS.gene63310.t1
chr3.3	exon	60262264	60262736	60262264	ID=MS.gene63310.t1.exon5;Parent=MS.gene63310.t1
chr3.3	CDS	60262264	60262736	60262264	ID=cds.MS.gene63310.t1;Parent=MS.gene63310.t1
chr3.3	exon	60261897	60262177	60261897	ID=MS.gene63310.t1.exon6;Parent=MS.gene63310.t1
chr3.3	CDS	60261897	60262177	60261897	ID=cds.MS.gene63310.t1;Parent=MS.gene63310.t1

Gene Sequence

>MS.gene63310

ATGGCTGCTTCAGTTTCAACTGTTGGAGCTGTCAAAACTCCAGTATGTTACTTTCATTTGTTTTAATTAAATACTATATAGTATGCATGTTTATATAGTTCACATTCACATAGGTGTGTTTCTCAATAATTAAATGCTCCAAATCATGTGACTTAAATTTTATTACTACTATACATTACTGCAGTTGTATACCTATGTGATACTTAGCTGATATATAGGGATACTTAATAGTTGATATACATGTTTATATAGCACATAATAATGTTTGTGTAATTTAAGAATCCATTTATAGATACCATATTAGAAGGGTGATTAGTTTATCTTACGCTCATACTTTGATATAATTTGATGCATGATATAACATATTCAAGACCGTTTGAATCGGCTTATTTAAGCTTATTTAGTGACCTAAGTATTTGAGAGAGCTTATAGTAGTTTAAGACATATTCGTAGATGTTTTTCAGATTATTTTCATAAGCTTTACAAGAAAGCTTATGAAAACAGCTTATAAGTTGTATAAAAACAGTTTGAATTTAGTTTATTATTCTGATAATAAATAGTTTATACATAAACACTTGTATGATAATCACTTATGCTATAAATGCTCAATTAAACTGTTTATCCAAACAGATCCGTATATAGAAATCATGTAAAGTTAAAAGTGATATATAGGAGTAATAGATTTCAAGGAGTTGGTCTAGTGGATCACGACAAAACTTGTATCTTAAATTTTTGATTTGATACAAGTTCTATTTGATCCACTAGATTTTTACACGATATTTTTTTCGTTATCAAAAAAACAACTTAGAATAGATAAGTAAGTAAAAAGAGGGGGAGGTAATTGTAATTTGTAAGAATTGAACTCTTAATAATGTGAAATGTTGTGACGTTGCAGATGAGCTTGAATGGCTCAGTAGTATCTGGACCAACAGTTTCTAATTCAGCTTTCTTCGGAACAAGCTTGAAGAAGCTTACCGCAAGACTTCCAAACACAAAAGTTTCCTCAGGAAGCTTCAAAGTTTTTGCTGCTAAAGAGATCGATGACAGTAAACAGACCGACGGAGACAGATGGAGGGGTTTGGCCTATGATATTTCAGATGACCAACAAGACATCACAAGAGGAAAGGGTTTGGTTGATTCAGTTTTCCAAGCACCACAAGATGCTGGAACTCATTATGCAGTCATGAGTTCTTATGAGTACATTAGTACTGGACTTAAACAGTGAGTGACTTGCTACACATTTTATTAATATGTATGGTTTGTAAATGAAGTTTCTTTTCATCTAAAACTTGTGATGATGGTGTTTTAGGTACAACTTTGACAACACTATGGATGGATTTTACATTGCTCCTGCTTTTATGGACAAGCTTGTTGTTCACATCACCAAGAATTTCTTGACCCTACCCAACATCAAGGTATGTAAATTTGACTCATGAAGTCTCTATAGACTATGCTATGACTTTAGCAGAATTGGGATGCATATTCAATATTTTCATTTTTGTTTTGATAGGTTCCTCTCATTCTTGGAGTCTGGGGAGGCAAAGGACAAGGAAAATCTTTCCAAGCTGAGCTTGTCTTTGCCAAGATGGGAATCAAGTGAGTTCTTACTTATTTATTACACTAACCAATTCCATGCACAACATGCTTTCTAGTATAAATTACGATTTAAATTCTTAAACCTCATAACTTTGAAATCCTACAAGTGATTACTAAACAAGACCTTATGAGATTTCATGTATAAATTGTCTCTACTATCATAGGGGAAAAACTTTGCAAAAGCTAAGATCAACTTACGACTATAAACTATTTGGAAGAACTTATGAAAATTAGCCGAATACAGCTTATGGACATATCATAAACTATTTTTATAAGTTCTTTCAACCATTACGGACATGTTTCGATTAATTTATTTGAGTTTATCTATTGACATATACACTGGTGAGACTATTTAGGAGAGCTTATGAAAATGAATGATGTCTATAAGTTGTATTTTTCCAATAAGCACTCCAAGATAGCGTATAAAAGCAGTTTATGGCTTATTTGAATTTATTTTATCTTTTGTTATAGAAATAGCTTATACATAAGAACTTATACGATCAATGCTTATGCTGTAAGCTCTTGATAAACATGGCCTAATTCAAGTGCTCATTTCATGAAGCAAGACCAAAGAAGCATGTTACATTATCTGATACCTAACTTGTGTCTATTTAATGTTGAAATTGTGTAACAGCCCCATCATGATGAGTGCTGGAGAGCTTGAAAGTGGAAATGCAGGAGAGCCAGCAAAATTGATCAGACAGAGATACCGTGAAGCCTCTGACATTATCAGGAAAGGAAAGATGTGTTGTCTGTTCATCAACGATCTCGATGCAGGAGCAGGTCGTATGGGTGGAACCACACAATACACTGTCAACAACCAAATGGTGAATGCCACACTCATGAACATTGCTGATAACCCCACCAATGTCCAACTCCCTGGTATGTACAACAAGGAAGACAATGCTCGTGTGCCCATCATTGTCACCGGTAATGATTTCTCAACACTTTATGCTCCTCTCATCCGTGATGGTCGTATGGAGAAGTTCTACTGGGCTCCTACTAGAGAAGATCGTATTGGTGTCTGCATTGGAATTTTCCGCCATGACAATATCGCTAAAGATGACATTGTCAAGATTGTTGACACCTTCCCTGGCCAATCCATCGGTATACCTATCTATCTATCTGTCTATTTGTCTATCCGTCTGTCTGTCTGTTTGTCAGTCCGTCTCATTTATGAGCTATTATTGCAGATTTCTTCGGTGCATTGAGGGCTAGAGTGTACGATGATGAAGTGAGGAAGTGGGTTTCTGGAGTTGGTATTGAAACAATTGGAAAGAAGCTTGTGAACTCAAAGGAAGGACCACCAGTGTTTGAGCAGCCAAAGATGACACTAGAAAAGCTATTGGAGTATGGTAACATGCTTGTCTCAGAACAAGAGAATGTGAAGAGAGTCCAATTGGCAGACAAGTATTTGGAAGGTGCTGCTCTTGGTGATGCTAATCAAGATGCTATTAAGGAGGGAAAATTCTAG

Protein sequence

>MS.gene63310.t1

MAASVSTVGAVKTPMSLNGSVVSGPTVSNSAFFGTSLKKLTARLPNTKVSSGSFKVFAAKEIDDSKQTDGDRWRGLAYDISDDQQDITRGKGLVDSVFQAPQDAGTHYAVMSSYEYISTGLKQYNFDNTMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGVWGGKGQGKSFQAELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREASDIIRKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCIGIFRHDNIAKDDIVKIVDTFPGQSIDFFGALRARVYDDEVRKWVSGVGIETIGKKLVNSKEGPPVFEQPKMTLEKLLEYGNMLVSEQENVKRVQLADKYLEGAALGDANQDAIKEGKF